Query 029297
Match_columns 195
No_of_seqs 134 out of 246
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 17:22:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029297.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029297hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r27_A HnRNP L, heterogeneous 98.3 4.7E-07 1.6E-11 67.8 4.5 40 147-188 17-56 (100)
2 2dng_A Eukaryotic translation 98.2 2.5E-06 8.7E-11 60.3 6.2 41 148-189 10-50 (103)
3 1wex_A Hypothetical protein (r 98.2 1.8E-06 6.2E-11 63.5 5.5 40 147-188 11-50 (104)
4 2cq1_A PTB-like protein L; RRM 98.1 5.2E-06 1.8E-10 60.9 6.5 39 148-188 12-50 (101)
5 1wi8_A EIF-4B, eukaryotic tran 98.1 7.4E-06 2.5E-10 57.9 6.3 41 148-189 10-50 (104)
6 2ad9_A Polypyrimidine tract-bi 98.1 5E-06 1.7E-10 63.6 5.3 39 148-188 28-66 (119)
7 1x4d_A Matrin 3; structural ge 98.0 6.6E-06 2.3E-10 60.9 5.0 37 152-188 14-51 (102)
8 2e5i_A Heterogeneous nuclear r 98.0 1.1E-05 3.9E-10 61.8 6.5 49 137-187 9-59 (124)
9 2dnh_A Bruno-like 5, RNA bindi 98.0 1.5E-05 5E-10 56.2 6.5 37 153-189 15-51 (105)
10 2cq3_A RNA-binding protein 9; 98.0 1.8E-05 6E-10 55.7 6.7 40 153-192 15-54 (103)
11 2la6_A RNA-binding protein FUS 98.0 1.9E-05 6.4E-10 55.4 6.8 41 149-189 9-57 (99)
12 2cqi_A Nucleolysin TIAR; RNA r 98.0 9.5E-06 3.3E-10 57.1 5.1 42 153-194 15-56 (103)
13 3lqv_A PRE-mRNA branch site pr 98.0 8.6E-06 2.9E-10 58.4 4.8 40 148-187 3-42 (115)
14 1sjq_A Polypyrimidine tract-bi 98.0 4.3E-06 1.5E-10 62.9 3.3 36 153-188 16-51 (105)
15 2dgs_A DAZ-associated protein 97.9 1.7E-05 5.7E-10 55.5 6.0 36 153-188 10-45 (99)
16 1x4e_A RNA binding motif, sing 97.9 1.5E-05 5E-10 54.2 5.4 38 152-189 4-41 (85)
17 2cpz_A CUG triplet repeat RNA- 97.9 2E-05 6.7E-10 56.7 6.3 37 153-189 25-61 (115)
18 2dgw_A Probable RNA-binding pr 97.9 1.9E-05 6.6E-10 54.4 6.0 35 153-188 10-44 (91)
19 2dgv_A HnRNP M, heterogeneous 97.9 1.2E-05 4.1E-10 55.2 4.7 36 153-188 8-43 (92)
20 2cpj_A Non-POU domain-containi 97.9 2E-05 6.7E-10 55.3 5.9 40 147-188 11-50 (99)
21 2d9p_A Polyadenylate-binding p 97.9 1.9E-05 6.4E-10 55.6 5.6 37 152-188 14-50 (103)
22 2cph_A RNA binding motif prote 97.9 2E-05 7E-10 55.4 5.6 36 153-188 15-50 (107)
23 2dnm_A SRP46 splicing factor; 97.9 1.9E-05 6.6E-10 55.5 5.5 37 153-189 13-49 (103)
24 2dnz_A Probable RNA-binding pr 97.9 2.1E-05 7.2E-10 54.2 5.5 38 152-189 4-41 (95)
25 2cpy_A RNA-binding protein 12; 97.9 2.5E-05 8.7E-10 56.6 6.1 37 152-189 14-52 (114)
26 1why_A Hypothetical protein ri 97.9 2.6E-05 8.9E-10 54.4 5.9 36 153-188 17-52 (97)
27 2cqc_A Arginine/serine-rich sp 97.9 2.3E-05 7.9E-10 53.9 5.5 37 153-189 15-51 (95)
28 2do4_A Squamous cell carcinoma 97.9 3.1E-05 1.1E-09 54.2 6.2 37 153-189 17-53 (100)
29 1wf0_A TDP-43, TAR DNA-binding 97.9 1.5E-05 5E-10 54.8 4.4 35 153-187 5-39 (88)
30 2dgt_A RNA-binding protein 30; 97.8 2.1E-05 7.2E-10 54.4 5.1 35 153-187 10-44 (92)
31 1x4a_A Splicing factor, argini 97.8 5.2E-05 1.8E-09 53.9 7.2 37 152-188 21-57 (109)
32 2e5h_A Zinc finger CCHC-type a 97.8 2.9E-05 1E-09 53.4 5.7 37 153-189 16-52 (94)
33 2err_A Ataxin-2-binding protei 97.8 2.5E-05 8.4E-10 56.4 5.4 41 153-193 29-69 (109)
34 2ytc_A PRE-mRNA-splicing facto 97.8 2.7E-05 9.2E-10 52.7 5.3 36 153-188 12-47 (85)
35 2khc_A Testis-specific RNP-typ 97.8 4.7E-05 1.6E-09 54.7 6.9 37 153-189 40-76 (118)
36 1x4f_A Matrin 3; structural ge 97.8 1.3E-05 4.3E-10 60.7 4.1 39 148-188 22-61 (112)
37 2lxi_A RNA-binding protein 10; 97.8 5.4E-06 1.8E-10 58.5 1.7 37 153-189 1-38 (91)
38 2cq0_A Eukaryotic translation 97.8 4.3E-05 1.5E-09 53.7 6.2 37 153-189 15-51 (103)
39 3s7r_A Heterogeneous nuclear r 97.8 3.8E-05 1.3E-09 52.3 5.5 37 153-189 11-47 (87)
40 2cpf_A RNA binding motif prote 97.8 1.4E-05 4.6E-10 55.7 3.1 37 153-189 5-41 (98)
41 3bs9_A Nucleolysin TIA-1 isofo 97.8 2.3E-05 7.9E-10 53.1 4.2 37 153-189 6-42 (87)
42 2dnq_A RNA-binding protein 4B; 97.8 2.6E-05 8.9E-10 53.8 4.4 34 153-186 8-41 (90)
43 2m2b_A RNA-binding protein 10; 97.8 4.1E-05 1.4E-09 56.7 5.8 37 153-189 23-61 (131)
44 1x4h_A RNA-binding protein 28; 97.8 4.5E-05 1.5E-09 54.0 5.7 37 153-189 15-51 (111)
45 2j76_E EIF-4B, EIF4B, eukaryot 97.8 1.6E-05 5.5E-10 56.3 3.3 39 150-189 16-54 (100)
46 2cpd_A Apobec-1 stimulating pr 97.8 4.7E-05 1.6E-09 53.3 5.7 38 147-186 11-50 (99)
47 2krb_A Eukaryotic translation 97.7 2.7E-05 9.3E-10 52.9 4.2 42 153-194 1-48 (81)
48 3mdf_A Peptidyl-prolyl CIS-tra 97.7 2.8E-05 9.7E-10 52.4 4.2 36 153-188 7-42 (85)
49 1wf1_A RNA-binding protein RAL 97.7 8E-05 2.7E-09 53.2 6.8 33 153-185 27-60 (110)
50 2fc8_A NCL protein; structure 97.7 5.7E-05 1.9E-09 52.8 5.8 34 153-189 15-48 (102)
51 2cqb_A Peptidyl-prolyl CIS-tra 97.7 4.8E-05 1.6E-09 53.2 5.5 36 153-188 12-47 (102)
52 2do0_A HnRNP M, heterogeneous 97.7 6.8E-05 2.3E-09 53.4 6.1 37 153-189 15-51 (114)
53 2cpx_A Hypothetical protein FL 97.7 4.3E-05 1.5E-09 54.6 5.0 40 152-191 24-67 (115)
54 2x1f_A MRNA 3'-END-processing 97.7 3.5E-05 1.2E-09 53.7 4.5 37 153-189 2-38 (96)
55 2dgp_A Bruno-like 4, RNA bindi 97.7 2.3E-05 7.9E-10 55.2 3.6 37 153-189 13-49 (106)
56 2div_A TRNA selenocysteine ass 97.7 3.4E-05 1.2E-09 53.7 4.3 37 153-189 9-46 (99)
57 3tyt_A Heterogeneous nuclear r 97.7 1.1E-05 3.9E-10 64.8 2.1 43 148-192 120-164 (205)
58 3pgw_A U1-A; protein-RNA compl 97.7 3.2E-05 1.1E-09 62.5 4.7 42 146-189 202-243 (282)
59 4f25_A Polyadenylate-binding p 97.7 1.9E-05 6.5E-10 57.5 3.1 39 153-191 5-43 (115)
60 1x4c_A Splicing factor, argini 97.7 5E-05 1.7E-09 54.4 5.2 36 152-187 14-49 (108)
61 1x5u_A Splicing factor 3B subu 97.7 6.3E-05 2.2E-09 52.9 5.6 37 153-189 15-51 (105)
62 2dhg_A TRNA selenocysteine ass 97.7 3.8E-05 1.3E-09 53.9 4.4 37 153-189 9-46 (104)
63 3ex7_B RNA-binding protein 8A; 97.7 4.9E-05 1.7E-09 55.2 5.1 36 153-188 22-57 (126)
64 3ulh_A THO complex subunit 4; 97.7 4.7E-05 1.6E-09 53.7 4.9 37 153-189 29-65 (107)
65 2cpe_A RNA-binding protein EWS 97.7 6.9E-05 2.4E-09 53.5 5.8 36 153-188 15-58 (113)
66 2cq4_A RNA binding motif prote 97.7 5.8E-05 2E-09 54.1 5.4 37 153-189 25-61 (114)
67 2dh8_A DAZ-associated protein 97.7 5.9E-05 2E-09 53.2 5.3 37 153-189 16-52 (105)
68 2jvo_A Nucleolar protein 3; nu 97.7 4.9E-05 1.7E-09 55.2 5.0 34 153-186 31-64 (108)
69 4fxv_A ELAV-like protein 1; RN 97.7 4.9E-05 1.7E-09 54.5 4.9 37 153-189 19-55 (99)
70 2lkz_A RNA-binding protein 5; 97.7 3.4E-05 1.2E-09 55.8 4.0 37 153-189 9-47 (95)
71 1wg1_A KIAA1579 protein, homol 97.7 4.3E-05 1.5E-09 52.8 4.2 33 153-186 5-37 (88)
72 2dgu_A Heterogeneous nuclear r 97.7 3.2E-05 1.1E-09 54.7 3.6 35 153-187 11-45 (103)
73 1x5s_A Cold-inducible RNA-bind 97.6 5.3E-05 1.8E-09 53.0 4.6 37 153-189 12-48 (102)
74 2cqd_A RNA-binding region cont 97.6 6.6E-05 2.3E-09 53.9 5.1 37 153-189 17-53 (116)
75 2dgo_A Cytotoxic granule-assoc 97.6 7.4E-05 2.5E-09 53.5 5.3 37 153-189 15-51 (115)
76 2nlw_A Eukaryotic translation 97.6 8.5E-05 2.9E-09 53.1 5.6 43 152-194 14-62 (105)
77 2cqg_A TDP-43, TAR DNA-binding 97.6 6.5E-05 2.2E-09 52.8 4.9 37 153-189 15-51 (103)
78 2ywk_A Putative RNA-binding pr 97.6 4.7E-05 1.6E-09 52.5 4.0 37 153-189 16-52 (95)
79 1whw_A Hypothetical protein ri 97.6 4.4E-05 1.5E-09 53.1 3.9 37 153-189 8-44 (99)
80 2rs2_A Musashi-1, RNA-binding 97.6 6.2E-05 2.1E-09 54.4 4.7 38 152-189 24-61 (109)
81 2e5j_A Methenyltetrahydrofolat 97.6 8E-05 2.7E-09 52.1 5.1 39 152-191 18-56 (97)
82 1wg5_A Heterogeneous nuclear r 97.6 9.3E-05 3.2E-09 52.8 5.5 36 153-188 15-51 (104)
83 2la4_A Nuclear and cytoplasmic 97.6 7.2E-05 2.5E-09 52.4 4.8 35 153-187 27-61 (101)
84 2cqp_A RNA-binding protein 12; 97.6 6E-05 2.1E-09 52.3 4.4 36 153-188 15-50 (98)
85 1h2v_Z 20 kDa nuclear CAP bind 97.6 7.1E-05 2.4E-09 56.5 5.1 37 153-189 39-75 (156)
86 3d2w_A TAR DNA-binding protein 97.6 5E-05 1.7E-09 53.4 4.0 35 153-187 11-45 (89)
87 1nu4_A U1A RNA binding domain; 97.6 4.3E-05 1.5E-09 52.9 3.6 37 148-186 5-45 (97)
88 2hgm_A HNRPF protein, heteroge 97.6 8.7E-05 3E-09 56.8 5.6 35 153-188 42-78 (126)
89 2kxn_B Transformer-2 protein h 97.6 8.2E-05 2.8E-09 55.8 5.3 38 152-189 45-82 (129)
90 1x5t_A Splicing factor 3B subu 97.6 5.2E-05 1.8E-09 52.3 3.9 36 153-188 5-41 (96)
91 2kvi_A Nuclear polyadenylated 97.6 6E-05 2.1E-09 52.8 4.2 38 147-186 6-44 (96)
92 2ek1_A RNA-binding protein 12; 97.6 3.4E-05 1.2E-09 53.2 2.9 36 153-188 15-50 (95)
93 1wez_A HnRNP H', FTP-3, hetero 97.6 0.00012 4.2E-09 52.7 5.9 36 153-189 15-50 (102)
94 4a8x_A RNA-binding protein wit 97.6 5.9E-05 2E-09 51.0 3.9 37 153-189 4-40 (88)
95 1whx_A Hypothetical protein ri 97.6 4E-05 1.4E-09 55.7 3.2 35 153-187 10-44 (111)
96 1p27_B RNA-binding protein 8A; 97.6 7.5E-05 2.5E-09 52.6 4.4 37 153-189 23-59 (106)
97 3s8s_A Histone-lysine N-methyl 97.6 0.0001 3.5E-09 54.0 5.2 37 153-189 6-42 (110)
98 2dnp_A RNA-binding protein 14; 97.6 4.5E-05 1.5E-09 52.5 3.1 35 153-187 9-43 (90)
99 2e44_A Insulin-like growth fac 97.5 6.2E-05 2.1E-09 52.1 3.6 35 153-187 15-49 (96)
100 2xnq_A Nuclear polyadenylated 97.5 7.2E-05 2.4E-09 53.1 4.0 38 147-186 18-56 (97)
101 1uaw_A Mouse-musashi-1; RNP-ty 97.5 7.1E-05 2.4E-09 49.5 3.7 35 155-189 2-36 (77)
102 1x5o_A RNA binding motif, sing 97.5 0.00039 1.3E-08 49.5 7.9 37 153-189 25-61 (114)
103 1oo0_B CG8781-PA, drosophila Y 97.5 6.7E-05 2.3E-09 53.3 3.8 37 153-189 26-62 (110)
104 2fy1_A RNA-binding motif prote 97.5 0.00011 3.7E-09 53.8 4.9 38 152-189 6-43 (116)
105 2lea_A Serine/arginine-rich sp 97.5 6.7E-05 2.3E-09 56.6 3.8 37 153-189 47-83 (135)
106 1x4b_A Heterogeneous nuclear r 97.5 7.5E-05 2.6E-09 53.7 3.9 37 153-189 27-63 (116)
107 2kt5_A RNA and export factor-b 97.5 0.00012 4.2E-09 53.3 5.1 38 152-189 34-71 (124)
108 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.5 0.00012 4.2E-09 53.4 4.8 36 153-188 63-98 (140)
109 1rk8_A CG8781-PA, CG8781-PA pr 97.5 0.00011 3.8E-09 56.4 4.8 37 153-189 72-108 (165)
110 2db1_A Heterogeneous nuclear r 97.5 0.00013 4.6E-09 53.5 5.0 38 152-189 16-56 (118)
111 1wel_A RNA-binding protein 12; 97.5 0.00019 6.3E-09 52.6 5.7 39 149-187 21-59 (124)
112 3ns6_A Eukaryotic translation 97.5 5.8E-05 2E-09 53.7 2.8 37 153-189 6-48 (100)
113 2dnn_A RNA-binding protein 12; 97.5 0.0001 3.4E-09 54.7 4.1 36 153-189 16-51 (109)
114 2fc9_A NCL protein; structure 97.5 0.00019 6.5E-09 50.2 5.4 33 153-188 15-47 (101)
115 1u6f_A Tcubp1, RNA-binding pro 97.4 0.00013 4.5E-09 53.8 4.5 39 151-189 40-78 (139)
116 3zzy_A Polypyrimidine tract-bi 97.4 0.00014 4.9E-09 56.6 4.8 40 149-188 22-63 (130)
117 2jrs_A RNA-binding protein 39; 97.4 0.0002 6.8E-09 51.8 5.3 36 153-188 26-61 (108)
118 3md1_A Nuclear and cytoplasmic 97.4 0.00019 6.6E-09 48.0 4.8 35 154-188 2-36 (83)
119 3ucg_A Polyadenylate-binding p 97.4 0.00016 5.4E-09 49.1 4.3 37 153-189 6-42 (89)
120 1x4g_A Nucleolysin TIAR; struc 97.4 7.6E-05 2.6E-09 53.2 2.7 36 153-188 25-60 (109)
121 2xs2_A Deleted in azoospermia- 97.4 0.00011 3.9E-09 51.4 3.4 37 153-189 9-45 (102)
122 2dis_A Unnamed protein product 97.4 9.4E-05 3.2E-09 52.3 2.9 34 153-186 8-42 (109)
123 2dgx_A KIAA0430 protein; RRM d 97.4 0.00013 4.4E-09 51.2 3.6 38 153-190 9-50 (96)
124 3p5t_L Cleavage and polyadenyl 97.4 0.00013 4.4E-09 50.5 3.5 36 154-189 2-39 (90)
125 2adc_A Polypyrimidine tract-bi 97.4 7.9E-05 2.7E-09 59.4 2.7 41 147-189 30-71 (229)
126 1p1t_A Cleavage stimulation fa 97.3 0.00012 4.1E-09 51.2 3.2 37 153-189 8-44 (104)
127 1s79_A Lupus LA protein; RRM, 97.3 0.00016 5.6E-09 52.5 4.0 36 153-188 11-46 (103)
128 2dnl_A Cytoplasmic polyadenyla 97.3 0.0002 6.8E-09 51.8 4.4 36 153-189 8-43 (114)
129 2cpi_A CCR4-NOT transcription 97.3 0.00015 5.2E-09 52.3 3.6 37 153-189 15-54 (111)
130 2lmi_A GRSF-1, G-rich sequence 97.3 0.0002 7E-09 51.2 4.3 38 152-189 10-50 (107)
131 1fjc_A Nucleolin RBD2, protein 97.3 0.00014 4.7E-09 50.3 3.0 31 153-186 16-46 (96)
132 2jwn_A Embryonic polyadenylate 97.3 0.00017 5.8E-09 52.2 3.4 36 153-188 36-71 (124)
133 3beg_B Splicing factor, argini 97.3 8.2E-05 2.8E-09 54.3 1.7 35 153-187 16-50 (115)
134 2i2y_A Fusion protein consists 97.3 0.00011 3.7E-09 55.2 2.4 36 153-188 73-108 (150)
135 2hgn_A Heterogeneous nuclear r 97.2 0.00026 9E-09 54.8 4.4 36 153-189 46-81 (139)
136 1iqt_A AUF1, heterogeneous nuc 97.2 0.00014 4.7E-09 48.0 2.4 34 155-188 1-34 (75)
137 2mss_A Protein (musashi1); RNA 97.2 0.00019 6.5E-09 47.5 3.0 34 156-189 2-35 (75)
138 2f3j_A RNA and export factor b 97.2 0.00027 9.3E-09 55.9 4.4 38 152-189 87-124 (177)
139 2hzc_A Splicing factor U2AF 65 97.2 0.00015 5E-09 49.0 2.3 35 153-187 6-51 (87)
140 2cqh_A IGF-II mRNA-binding pro 97.2 0.0002 6.9E-09 49.3 3.0 33 153-185 8-41 (93)
141 1l3k_A Heterogeneous nuclear r 97.2 0.00047 1.6E-08 51.9 5.1 37 153-189 104-140 (196)
142 2hgl_A HNRPF protein, heteroge 97.2 0.00039 1.3E-08 53.5 4.8 37 153-189 44-83 (136)
143 2hvz_A Splicing factor, argini 97.2 0.0002 6.9E-09 50.1 2.6 34 155-188 2-35 (101)
144 2kn4_A Immunoglobulin G-bindin 97.1 0.00033 1.1E-08 52.5 3.9 36 153-188 70-105 (158)
145 2dha_A FLJ20171 protein; RRM d 97.1 0.00024 8.3E-09 53.8 3.2 37 152-188 22-62 (123)
146 3sde_A Paraspeckle component 1 97.1 0.00056 1.9E-08 55.6 5.4 35 153-187 22-56 (261)
147 2e5g_A U6 snRNA-specific termi 97.1 0.00057 2E-08 47.4 4.7 31 153-183 8-38 (94)
148 2qfj_A FBP-interacting repress 97.1 0.00065 2.2E-08 51.9 5.2 37 153-189 125-161 (216)
149 3md3_A Nuclear and cytoplasmic 97.1 0.0011 3.9E-08 48.0 6.2 36 153-188 87-122 (166)
150 2ki2_A SS-DNA binding protein 97.1 0.00012 4.2E-09 50.0 0.7 36 154-189 2-37 (90)
151 1b7f_A Protein (SXL-lethal pro 97.1 0.00094 3.2E-08 48.9 5.5 37 153-189 89-125 (168)
152 1qm9_A Polypyrimidine tract-bi 97.0 0.00038 1.3E-08 53.2 3.5 39 148-188 117-156 (198)
153 3nmr_A Cugbp ELAV-like family 97.0 0.00042 1.4E-08 51.0 3.6 37 153-189 95-131 (175)
154 1sjr_A Polypyrimidine tract-bi 97.0 0.00034 1.2E-08 56.6 3.2 38 153-190 44-83 (164)
155 2g4b_A Splicing factor U2AF 65 97.0 0.00087 3E-08 49.5 5.1 37 153-189 94-130 (172)
156 3pgw_S U1-70K; protein-RNA com 97.0 0.0004 1.4E-08 62.4 3.7 37 152-188 101-137 (437)
157 2voo_A Lupus LA protein; RNA-b 97.0 0.00056 1.9E-08 54.6 4.0 36 153-188 109-144 (193)
158 3n9u_C Cleavage and polyadenyl 97.0 0.00051 1.7E-08 53.4 3.7 36 153-188 55-92 (156)
159 2yh0_A Splicing factor U2AF 65 97.0 0.00098 3.3E-08 50.3 5.1 39 151-189 112-150 (198)
160 2jvr_A Nucleolar protein 3; RN 97.0 0.00036 1.2E-08 52.0 2.6 38 152-189 27-65 (111)
161 2adc_A Polypyrimidine tract-bi 97.0 0.00063 2.2E-08 54.2 4.1 39 148-188 148-187 (229)
162 2lcw_A RNA-binding protein FUS 96.0 0.00013 4.5E-09 52.5 0.0 36 153-188 7-50 (116)
163 1fje_B Nucleolin RBD12, protei 96.9 0.00085 2.9E-08 49.9 4.4 31 153-186 99-129 (175)
164 4f02_A Polyadenylate-binding p 96.9 0.0005 1.7E-08 54.2 3.2 39 153-191 103-141 (213)
165 1fj7_A Nucleolin RBD1, protein 96.9 0.00051 1.7E-08 48.0 2.6 31 152-182 16-46 (101)
166 1fxl_A Paraneoplastic encephal 96.9 0.00099 3.4E-08 48.4 4.2 37 153-189 88-124 (167)
167 3egn_A RNA-binding protein 40; 96.8 0.00044 1.5E-08 51.4 2.1 32 152-183 44-75 (143)
168 1x5p_A Negative elongation fac 96.8 0.0023 7.9E-08 44.5 5.5 32 153-186 15-46 (97)
169 2qfj_A FBP-interacting repress 96.8 0.00089 3E-08 51.2 3.5 37 153-189 28-64 (216)
170 3q2s_C Cleavage and polyadenyl 96.8 0.0012 4E-08 54.1 4.4 37 153-189 68-106 (229)
171 2ghp_A U4/U6 snRNA-associated 96.8 0.00075 2.6E-08 54.7 3.1 39 153-191 41-79 (292)
172 2a3j_A U1 small nuclear ribonu 96.7 0.0014 4.6E-08 49.8 4.3 38 148-187 26-67 (127)
173 2cjk_A Nuclear polyadenylated 96.6 0.001 3.5E-08 48.8 2.8 37 153-189 87-123 (167)
174 2bz2_A Negative elongation fac 96.4 0.0034 1.2E-07 46.6 4.5 33 152-186 38-70 (121)
175 3smz_A Protein raver-1, ribonu 96.4 0.0028 9.6E-08 51.1 4.4 32 153-185 22-53 (284)
176 3smz_A Protein raver-1, ribonu 96.3 0.0053 1.8E-07 49.5 5.5 37 153-189 184-221 (284)
177 2cq2_A Hypothetical protein LO 96.3 0.0014 4.7E-08 49.9 1.9 36 153-188 25-62 (114)
178 3u1l_A PRE-mRNA-splicing facto 96.3 0.003 1E-07 53.5 4.0 36 153-188 134-178 (240)
179 2diu_A KIAA0430 protein; struc 96.2 0.0035 1.2E-07 47.5 3.5 30 147-178 4-38 (96)
180 1owx_A Lupus LA protein, SS-B, 96.1 0.0061 2.1E-07 47.1 4.5 43 146-190 13-56 (121)
181 2ghp_A U4/U6 snRNA-associated 96.0 0.0037 1.3E-07 50.6 3.1 37 153-189 210-247 (292)
182 3sde_A Paraspeckle component 1 95.9 0.0061 2.1E-07 49.5 4.0 36 153-188 96-131 (261)
183 2wbr_A GW182, gawky, LD47780P; 95.2 0.007 2.4E-07 45.0 1.7 35 153-187 7-41 (89)
184 3tht_A Alkylated DNA repair pr 95.0 0.018 6.3E-07 51.0 4.1 36 153-188 18-55 (345)
185 1whv_A Poly(A)-specific ribonu 93.3 0.1 3.5E-06 40.0 4.6 37 149-187 12-48 (100)
186 2dit_A HIV TAT specific factor 92.6 0.26 8.7E-06 35.2 5.7 34 153-186 15-59 (112)
187 2d9o_A DNAJ (HSP40) homolog, s 91.5 0.27 9.3E-06 35.8 4.8 34 153-186 10-50 (100)
188 3ctr_A Poly(A)-specific ribonu 90.3 0.15 5.2E-06 39.1 2.5 33 153-187 6-38 (101)
189 2pe8_A Splicing factor 45; RRM 88.2 0.52 1.8E-05 34.1 4.0 37 152-188 7-48 (105)
190 1uw4_A UPF3X; nonsense mediate 78.3 2.2 7.4E-05 31.4 3.8 36 156-191 4-39 (91)
191 3v4m_A Splicing factor U2AF 65 74.7 3 0.0001 30.0 3.7 37 153-189 5-51 (105)
192 3ue2_A Poly(U)-binding-splicin 74.6 2.7 9.1E-05 31.2 3.5 37 153-189 20-61 (118)
193 1wey_A Calcipressin 1; structu 66.3 5.2 0.00018 30.5 3.5 33 154-186 6-52 (104)
194 2l08_A Regulator of nonsense t 63.1 3.9 0.00014 30.7 2.3 35 155-189 11-45 (97)
195 2dhx_A Poly (ADP-ribose) polym 61.8 5.4 0.00019 30.5 2.9 24 153-176 8-31 (104)
196 1jmt_A Splicing factor U2AF 35 45.0 4.1 0.00014 29.1 -0.2 32 158-189 20-63 (104)
197 2j8a_A Histone-lysine N-methyl 38.8 22 0.00074 28.3 3.0 29 162-190 15-43 (136)
198 2l9w_A U4/U6 snRNA-associated- 31.0 38 0.0013 26.5 3.2 36 153-188 21-61 (117)
199 3s6e_A RNA-binding protein 39; 30.8 91 0.0031 22.7 5.2 37 152-188 6-52 (114)
200 2dnr_A Synaptojanin-1; RRM dom 20.6 66 0.0022 23.7 2.7 39 148-188 4-50 (91)
No 1
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.32 E-value=4.7e-07 Score=67.77 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=36.9
Q ss_pred CCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 147 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 147 ~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
..|| +++|||.|||.++|+++|..||.+|-..++|++++.
T Consensus 17 ~~~p--s~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~ 56 (100)
T 3r27_A 17 KTPA--SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK 56 (100)
T ss_dssp CCCC--CSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT
T ss_pred cCCC--CcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC
Confidence 4567 999999999999999999999999999999999864
No 2
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.21 E-value=2.5e-06 Score=60.26 Aligned_cols=41 Identities=32% Similarity=0.617 Sum_probs=36.1
Q ss_pred CCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 148 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 148 lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
.|+.++++|||.|||.++|+++|..+|.+| |.++|+++..+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~-gi~~v~i~~~~ 50 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDK 50 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTS-CEEEEEEEECS
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhC-CceEEEEeecC
Confidence 344458999999999999999999999999 89999998654
No 3
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.21 E-value=1.8e-06 Score=63.48 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=36.8
Q ss_pred CCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 147 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 147 ~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
..+| +++|||.|||.++|+++|..+|.+|-..++|++++.
T Consensus 11 ~~~p--~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~ 50 (104)
T 1wex_A 11 KVSV--SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF 50 (104)
T ss_dssp CCCC--CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT
T ss_pred cCCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC
Confidence 4566 899999999999999999999999999999999864
No 4
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.13 E-value=5.2e-06 Score=60.88 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=35.9
Q ss_pred CCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 148 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 148 lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
.+| +++|||.|||.++|+++|..+|.+|-..++|+++..
T Consensus 12 ~~p--~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~ 50 (101)
T 2cq1_A 12 GAP--SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG 50 (101)
T ss_dssp SSC--CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT
T ss_pred CCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC
Confidence 345 899999999999999999999999999999999864
No 5
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.08 E-value=7.4e-06 Score=57.95 Aligned_cols=41 Identities=29% Similarity=0.468 Sum_probs=35.3
Q ss_pred CCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 148 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 148 lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
.|..+.++|||.|||.++|+++|..+|.+|. .++|+++..+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~ 50 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREP 50 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCS
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCC
Confidence 3333489999999999999999999999995 9999998654
No 6
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.05 E-value=5e-06 Score=63.56 Aligned_cols=39 Identities=26% Similarity=0.310 Sum_probs=36.1
Q ss_pred CCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 148 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 148 lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
.+| +++|||.|||.++|+++|..+|.+|-..++|+++..
T Consensus 28 ~~p--s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~ 66 (119)
T 2ad9_A 28 GVP--SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG 66 (119)
T ss_dssp SSC--CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG
T ss_pred CCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC
Confidence 445 899999999999999999999999999999999864
No 7
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.00 E-value=6.6e-06 Score=60.91 Aligned_cols=37 Identities=8% Similarity=0.174 Sum_probs=34.8
Q ss_pred CCceEEecCCCC-cccHHHHHhhccCCCCceEEEeeec
Q 029297 152 ASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 152 ~N~ILFVQNLP~-d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
++++|||.|||. ++|+++|..+|.+|-..++|+++..
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~ 51 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK 51 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC
Confidence 489999999999 9999999999999999999999864
No 8
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.00 E-value=1.1e-05 Score=61.85 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=40.4
Q ss_pred ccCCCCCCCCCCCCCCCceE--EecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297 137 AAARPGHETLPLPPDASSTL--YVEGLPADSTKREVAHIFRPFVGYKEVRLVI 187 (195)
Q Consensus 137 ~~~rp~~~~~~lPPd~N~IL--FVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp 187 (195)
-+.|++.+....|| |+|| ||.|||..+|+++|..+|.+|...++|+++.
T Consensus 9 ~i~~~~~~~~~~~p--s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~ 59 (124)
T 2e5i_A 9 RITRPGNTDDPSGG--NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK 59 (124)
T ss_dssp CCCCSCCCCCCCCC--CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred eeeCCCCCCCCCCC--CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 34566554455567 8886 5899999999999999999999999999976
No 9
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.00 E-value=1.5e-05 Score=56.16 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=34.9
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|-..++|+++..+
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 51 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP 51 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence 8899999999999999999999999999999998754
No 10
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=1.8e-05 Score=55.73 Aligned_cols=40 Identities=18% Similarity=0.319 Sum_probs=36.3
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCccC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKL 192 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~ 192 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++..+.+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~ 54 (103)
T 2cq3_A 15 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS 54 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC
Confidence 7899999999999999999999999999999999765443
No 11
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.98 E-value=1.9e-05 Score=55.37 Aligned_cols=41 Identities=24% Similarity=0.369 Sum_probs=36.2
Q ss_pred CCCCCceEEecCCCCcccHHHHHhhccCCCCceE--------EEeeecC
Q 029297 149 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKE--------VRLVIKE 189 (195)
Q Consensus 149 PPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkE--------VRLVp~r 189 (195)
|+..+.+|||.|||.++|+++|..+|++|--.++ |+++..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~ 57 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDR 57 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecC
Confidence 3444899999999999999999999999999998 9998653
No 12
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.96 E-value=9.5e-06 Score=57.10 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=37.3
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCccCCC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLLN 194 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~g 194 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++..+.++.|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g 56 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP 56 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCC
T ss_pred CCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCC
Confidence 789999999999999999999999999999999986554433
No 13
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=97.96 E-value=8.6e-06 Score=58.38 Aligned_cols=40 Identities=30% Similarity=0.572 Sum_probs=36.4
Q ss_pred CCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297 148 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 187 (195)
Q Consensus 148 lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp 187 (195)
+||+++++|||.|||.++|+++|..+|.+|.-.++|+++.
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~ 42 (115)
T 3lqv_A 3 LPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN 42 (115)
T ss_dssp CCTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee
Confidence 4555699999999999999999999999999999999985
No 14
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.95 E-value=4.3e-06 Score=62.92 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=34.5
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+++|||.|||.++|+++|..+|.+|...++|+++..
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~ 51 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG 51 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC
Confidence 889999999999999999999999999999999864
No 15
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.94 E-value=1.7e-05 Score=55.46 Aligned_cols=36 Identities=25% Similarity=0.517 Sum_probs=34.2
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+++|||.|||.++|+++|..+|.+|-..++|+++..
T Consensus 10 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 45 (99)
T 2dgs_A 10 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYD 45 (99)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence 789999999999999999999999999999999864
No 16
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.94 E-value=1.5e-05 Score=54.18 Aligned_cols=38 Identities=21% Similarity=0.525 Sum_probs=35.0
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
++++|||.|||.++|+++|..+|.+|-..++|+++..+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~ 41 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDK 41 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence 38899999999999999999999999999999998653
No 17
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.93 E-value=2e-05 Score=56.65 Aligned_cols=37 Identities=19% Similarity=0.488 Sum_probs=34.7
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|-..++|+++..+
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 61 (115)
T 2cpz_A 25 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDK 61 (115)
T ss_dssp TCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence 7899999999999999999999999999999998754
No 18
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.93 E-value=1.9e-05 Score=54.38 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=33.4
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
.++|||.|||.++|+++|..+|.+| ..++|+++..
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~ 44 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN 44 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC
T ss_pred ccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC
Confidence 7899999999999999999999999 9999999875
No 19
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.91 E-value=1.2e-05 Score=55.21 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=34.1
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++..
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~ 43 (92)
T 2dgv_A 8 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME 43 (92)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc
Confidence 789999999999999999999999999999999864
No 20
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.91 E-value=2e-05 Score=55.27 Aligned_cols=40 Identities=28% Similarity=0.418 Sum_probs=35.8
Q ss_pred CCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 147 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 147 ~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
..++ +++|||.|||.++|+++|..+|.+|...++|+++..
T Consensus 11 ~~~~--~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~ 50 (99)
T 2cpj_A 11 TFTQ--RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD 50 (99)
T ss_dssp CCCC--TTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT
T ss_pred cCCC--CCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC
Confidence 3455 889999999999999999999999999999999853
No 21
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.90 E-value=1.9e-05 Score=55.57 Aligned_cols=37 Identities=19% Similarity=0.408 Sum_probs=34.6
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
.+++|||.|||.++|+++|..+|.+|--.++|+++..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME 50 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC
Confidence 4889999999999999999999999999999999865
No 22
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.88 E-value=2e-05 Score=55.40 Aligned_cols=36 Identities=33% Similarity=0.567 Sum_probs=34.3
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+++|||.|||.++|+++|..+|.+|-..++|+++..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (107)
T 2cph_A 15 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKK 50 (107)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecC
Confidence 889999999999999999999999999999999865
No 23
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.88 E-value=1.9e-05 Score=55.52 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=34.3
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~ 49 (103)
T 2dnm_A 13 MITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREP 49 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCS
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC
Confidence 8999999999999999999999999999999998643
No 24
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=2.1e-05 Score=54.24 Aligned_cols=38 Identities=32% Similarity=0.426 Sum_probs=35.0
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
++++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~ 41 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDS 41 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecC
Confidence 38899999999999999999999999999999998754
No 25
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.87 E-value=2.5e-05 Score=56.61 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=32.2
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCceE--EEeeecC
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKE--VRLVIKE 189 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkE--VRLVp~r 189 (195)
.+++|||.|||.++|+++|..+|.+| |.++ |+|+..+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~-g~v~~~v~i~~d~ 52 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGI-PVDENAVHVLVDN 52 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTS-CCCSTTEEECCCT
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhC-CCcCCeEEEEECC
Confidence 37899999999999999999999999 6654 9998644
No 26
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.87 E-value=2.6e-05 Score=54.45 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=34.0
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++..
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~ 52 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG 52 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC
Confidence 789999999999999999999999999999998864
No 27
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.86 E-value=2.3e-05 Score=53.86 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=34.6
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|.-.++|+++...
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~ 51 (95)
T 2cqc_A 15 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ 51 (95)
T ss_dssp GGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcC
Confidence 8999999999999999999999999999999998643
No 28
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=3.1e-05 Score=54.18 Aligned_cols=37 Identities=32% Similarity=0.557 Sum_probs=34.8
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 53 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR 53 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC
Confidence 7899999999999999999999999999999998755
No 29
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.86 E-value=1.5e-05 Score=54.82 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=33.3
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 187 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp 187 (195)
+++|||.|||.++|+++|..+|++|--.++|+++.
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~ 39 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK 39 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEec
Confidence 78999999999999999999999999999999875
No 30
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.85 E-value=2.1e-05 Score=54.45 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=32.9
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 187 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp 187 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++.
T Consensus 10 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~ 44 (92)
T 2dgt_A 10 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK 44 (92)
T ss_dssp SEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC
Confidence 88999999999999999999999999999999873
No 31
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.84 E-value=5.2e-05 Score=53.92 Aligned_cols=37 Identities=19% Similarity=0.514 Sum_probs=33.8
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
.+++|||.|||.++|+++|..+|.+|-..++|++...
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~ 57 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR 57 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC
Confidence 3789999999999999999999999999999998653
No 32
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=2.9e-05 Score=53.43 Aligned_cols=37 Identities=27% Similarity=0.443 Sum_probs=34.5
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~ 52 (94)
T 2e5h_A 16 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDK 52 (94)
T ss_dssp TTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCC
Confidence 7899999999999999999999999999999998754
No 33
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.83 E-value=2.5e-05 Score=56.42 Aligned_cols=41 Identities=17% Similarity=0.294 Sum_probs=36.7
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCccCC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLL 193 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~~~ 193 (195)
+++|||.|||.++|+++|..+|.+|-..++|+++..+.+..
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~k 69 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 69 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCT
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCc
Confidence 88999999999999999999999999999999987654433
No 34
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.83 E-value=2.7e-05 Score=52.68 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=33.8
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+++|||.|||.++|+++|..+|.+|-..++|+++..
T Consensus 12 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~ 47 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR 47 (85)
T ss_dssp CCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC
Confidence 789999999999999999999999999999999863
No 35
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=97.83 E-value=4.7e-05 Score=54.74 Aligned_cols=37 Identities=24% Similarity=0.480 Sum_probs=34.5
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|-..++|+++..+
T Consensus 40 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 76 (118)
T 2khc_A 40 GCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDK 76 (118)
T ss_dssp SEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC
Confidence 8899999999999999999999999999999998653
No 36
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.83 E-value=1.3e-05 Score=60.73 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=35.5
Q ss_pred CCCCCCceEEecCCCCc-ccHHHHHhhccCCCCceEEEeeec
Q 029297 148 LPPDASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 148 lPPd~N~ILFVQNLP~d-~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
.+| +++|||.|||.+ +|+++|..+|.+|-..++|+|+..
T Consensus 22 ~~p--~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~ 61 (112)
T 1x4f_A 22 QEL--GRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM 61 (112)
T ss_dssp SCC--CCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT
T ss_pred CCC--CCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC
Confidence 445 899999999998 999999999999999999999853
No 37
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.82 E-value=5.4e-06 Score=58.47 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=33.3
Q ss_pred CceEEecCCCCcccHHHHHhhccCCC-CceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFp-GFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|++|- -.++||++..+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~ 38 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNK 38 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecC
Confidence 58999999999999999999999996 68999998644
No 38
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.81 E-value=4.3e-05 Score=53.73 Aligned_cols=37 Identities=24% Similarity=0.508 Sum_probs=34.6
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~ 51 (103)
T 2cq0_A 15 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDK 51 (103)
T ss_dssp SEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecC
Confidence 8999999999999999999999999999999998653
No 39
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=97.79 E-value=3.8e-05 Score=52.31 Aligned_cols=37 Identities=19% Similarity=0.445 Sum_probs=34.5
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|.-.++|+++..+
T Consensus 11 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 47 (87)
T 3s7r_A 11 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDP 47 (87)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecC
Confidence 7899999999999999999999999999999998653
No 40
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.78 E-value=1.4e-05 Score=55.68 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=34.5
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 41 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKK 41 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence 7899999999999999999999999999999998643
No 41
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.77 E-value=2.3e-05 Score=53.06 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=34.6
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+.+|||.|||.++|+++|..+|++|-..++|+++..+
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 42 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDM 42 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC
Confidence 8899999999999999999999999999999998753
No 42
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.77 E-value=2.6e-05 Score=53.76 Aligned_cols=34 Identities=21% Similarity=0.512 Sum_probs=32.7
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLV 186 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~ 41 (90)
T 2dnq_A 8 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDII 41 (90)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE
Confidence 8899999999999999999999999999999987
No 43
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=97.76 E-value=4.1e-05 Score=56.73 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=34.1
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceE--EEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKE--VRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkE--VRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|--.++ ||++..+
T Consensus 23 ~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~ 61 (131)
T 2m2b_A 23 NDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDK 61 (131)
T ss_dssp CCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcC
Confidence 889999999999999999999999998877 9998655
No 44
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.76 E-value=4.5e-05 Score=53.98 Aligned_cols=37 Identities=24% Similarity=0.486 Sum_probs=34.5
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 51 (111)
T 1x4h_A 15 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHP 51 (111)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence 8899999999999999999999999999999998653
No 45
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=97.75 E-value=1.6e-05 Score=56.27 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=32.6
Q ss_pred CCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 150 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 150 Pd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+...++|||.|||.++|+++|..+|.+|- .++|+++..+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~ 54 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREP 54 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecC
Confidence 34489999999999999999999999996 9999998654
No 46
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.75 E-value=4.7e-05 Score=53.32 Aligned_cols=38 Identities=16% Similarity=0.308 Sum_probs=31.5
Q ss_pred CCCCCCCceEEecCCCCcccHHHHHhhccCC--CCceEEEee
Q 029297 147 PLPPDASSTLYVEGLPADSTKREVAHIFRPF--VGYKEVRLV 186 (195)
Q Consensus 147 ~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qF--pGFkEVRLV 186 (195)
..++ +++|||.|||.++|+++|..+|.+| --.++|++.
T Consensus 11 ~~~~--~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~ 50 (99)
T 2cpd_A 11 TMSS--VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI 50 (99)
T ss_dssp CSSC--CCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC
T ss_pred ccCC--cCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe
Confidence 3445 8999999999999999999999999 556666653
No 47
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=97.75 E-value=2.7e-05 Score=52.86 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=34.9
Q ss_pred CceEEecCCCCcc------cHHHHHhhccCCCCceEEEeeecCccCCC
Q 029297 153 SSTLYVEGLPADS------TKREVAHIFRPFVGYKEVRLVIKESKLLN 194 (195)
Q Consensus 153 N~ILFVQNLP~d~------T~~eL~~LF~qFpGFkEVRLVp~r~~~~g 194 (195)
+++|||.|||.++ |+++|..+|.+|...++|+++....+..|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g 48 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKG 48 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeE
Confidence 4689999999999 88999999999999999998843333333
No 48
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.74 E-value=2.8e-05 Score=52.41 Aligned_cols=36 Identities=22% Similarity=0.506 Sum_probs=33.8
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+++|||.|||.++|+++|..+|.+|...++|+++..
T Consensus 7 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~ 42 (85)
T 3mdf_A 7 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD 42 (85)
T ss_dssp SSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEEC
Confidence 889999999999999999999999999999998764
No 49
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.74 E-value=8e-05 Score=53.19 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=31.5
Q ss_pred CceEEecCCCCc-ccHHHHHhhccCCCCceEEEe
Q 029297 153 SSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRL 185 (195)
Q Consensus 153 N~ILFVQNLP~d-~T~~eL~~LF~qFpGFkEVRL 185 (195)
+++|||.|||.+ +|+++|..+|.+|--.++|++
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i 60 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV 60 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE
Confidence 789999999999 999999999999999999887
No 50
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.73 E-value=5.7e-05 Score=52.83 Aligned_cols=34 Identities=32% Similarity=0.519 Sum_probs=30.3
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+ |.+|+++..+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~---~~~~~~~~~~ 48 (102)
T 2fc8_A 15 SKTLFVKGLSEDTTEETLKESFDG---SVRARIVTDR 48 (102)
T ss_dssp CSSEEEECCCTTCCHHHHHHTSTT---CSEEEEEECS
T ss_pred CCEEEEeCCCCccCHHHHHHHhcC---CeEEEEEecC
Confidence 899999999999999999999985 5789988654
No 51
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.73 E-value=4.8e-05 Score=53.21 Aligned_cols=36 Identities=22% Similarity=0.506 Sum_probs=34.0
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++..
T Consensus 12 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~ 47 (102)
T 2cqb_A 12 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD 47 (102)
T ss_dssp CSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEec
Confidence 889999999999999999999999999999999765
No 52
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.72 E-value=6.8e-05 Score=53.42 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=34.5
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~ 51 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK 51 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence 8899999999999999999999999999999998754
No 53
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.71 E-value=4.3e-05 Score=54.56 Aligned_cols=40 Identities=20% Similarity=0.438 Sum_probs=33.1
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCc----eEEEeeecCcc
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGY----KEVRLVIKESK 191 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGF----kEVRLVp~r~~ 191 (195)
++++|||.|||.++|+++|..+|.+|-.. ..++++.++++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~ 67 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMR 67 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccc
Confidence 48999999999999999999999998766 56676644443
No 54
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.71 E-value=3.5e-05 Score=53.69 Aligned_cols=37 Identities=14% Similarity=0.343 Sum_probs=34.5
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|++|-..++|+++..+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 38 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDP 38 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCT
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCC
Confidence 7899999999999999999999999999999998653
No 55
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.71 E-value=2.3e-05 Score=55.20 Aligned_cols=37 Identities=14% Similarity=0.395 Sum_probs=34.6
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|-..++|+++..+
T Consensus 13 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 49 (106)
T 2dgp_A 13 AIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDR 49 (106)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC
Confidence 7899999999999999999999999999999998743
No 56
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.71 E-value=3.4e-05 Score=53.72 Aligned_cols=37 Identities=11% Similarity=0.230 Sum_probs=34.5
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCce-EEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYK-EVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFk-EVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|.-.+ +|+++..+
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~ 46 (99)
T 2div_A 9 AASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNR 46 (99)
T ss_dssp SSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECS
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecC
Confidence 78999999999999999999999999999 99998654
No 57
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.71 E-value=1.1e-05 Score=64.75 Aligned_cols=43 Identities=19% Similarity=0.157 Sum_probs=38.2
Q ss_pred CCCCCCceEEecCCCCcccHHHHHhhccCCCCc--eEEEeeecCccC
Q 029297 148 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGY--KEVRLVIKESKL 192 (195)
Q Consensus 148 lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGF--kEVRLVp~r~~~ 192 (195)
.|| +++|||.|||.++|+++|..+|++|... ++|++++.+.++
T Consensus 120 ~~p--~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~ 164 (205)
T 3tyt_A 120 QHP--SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSER 164 (205)
T ss_dssp CCC--CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSS
T ss_pred CCC--cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCC
Confidence 356 8999999999999999999999999998 999999876443
No 58
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.70 E-value=3.2e-05 Score=62.51 Aligned_cols=42 Identities=33% Similarity=0.648 Sum_probs=37.8
Q ss_pred CCCCCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 146 LPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 146 ~~lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
...++ +++|||.|||.++|+++|..+|.+|...++|++++.+
T Consensus 202 ~~~~~--~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 202 SENPP--NHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243 (282)
T ss_pred cCCCC--CCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC
Confidence 34456 8999999999999999999999999999999999765
No 59
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.70 E-value=1.9e-05 Score=57.51 Aligned_cols=39 Identities=15% Similarity=0.339 Sum_probs=34.9
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCcc
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK 191 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~ 191 (195)
+..|||.|||.++|+++|..+|.+|.-.++|+++..+.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~ 43 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 43 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCC
Confidence 456999999999999999999999999999999876544
No 60
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.70 E-value=5e-05 Score=54.41 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=33.1
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 187 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp 187 (195)
.+..|||.|||.++|+++|..+|.+|--.++|+++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~ 49 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR 49 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEec
Confidence 378999999999999999999999999899998875
No 61
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.69 E-value=6.3e-05 Score=52.85 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=34.5
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 51 (105)
T 1x5u_A 15 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDR 51 (105)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence 8899999999999999999999999999999998654
No 62
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.69 E-value=3.8e-05 Score=53.90 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=34.6
Q ss_pred CceEEecCCCCcccHHHHHhhccC-CCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRP-FVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~q-FpGFkEVRLVp~r 189 (195)
+.+|||.|||.++|+++|..+|.+ |.-.++|+++..+
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~ 46 (104)
T 2dhg_A 9 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ 46 (104)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC
Confidence 789999999999999999999999 9999999998754
No 63
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.69 E-value=4.9e-05 Score=55.20 Aligned_cols=36 Identities=19% Similarity=0.432 Sum_probs=34.0
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++..
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 57 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLD 57 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec
Confidence 789999999999999999999999999999999854
No 64
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.69 E-value=4.7e-05 Score=53.69 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=34.7
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|.-.++|+++..+
T Consensus 29 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 65 (107)
T 3ulh_A 29 GGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR 65 (107)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence 8999999999999999999999999999999998654
No 65
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.69 E-value=6.9e-05 Score=53.47 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=32.6
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCce--------EEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYK--------EVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFk--------EVRLVp~ 188 (195)
+++|||.|||.++|+++|..+|.+|--.+ +|+++..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~ 58 (113)
T 2cpe_A 15 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLD 58 (113)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEe
Confidence 78999999999999999999999997777 5888864
No 66
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.68 E-value=5.8e-05 Score=54.09 Aligned_cols=37 Identities=19% Similarity=0.379 Sum_probs=34.2
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 61 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDR 61 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecC
Confidence 6799999999999999999999999999999998644
No 67
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.68 E-value=5.9e-05 Score=53.18 Aligned_cols=37 Identities=16% Similarity=0.297 Sum_probs=34.7
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
.++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~ 52 (105)
T 2dh8_A 16 IGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDK 52 (105)
T ss_dssp SSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC
Confidence 7899999999999999999999999999999998753
No 68
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.68 E-value=4.9e-05 Score=55.16 Aligned_cols=34 Identities=35% Similarity=0.678 Sum_probs=32.8
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLV 186 (195)
+++|||.|||.++|+++|..+|.+|-..++|+++
T Consensus 31 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~ 64 (108)
T 2jvo_A 31 NTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL 64 (108)
T ss_dssp CSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 8899999999999999999999999999999987
No 69
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.67 E-value=4.9e-05 Score=54.54 Aligned_cols=37 Identities=22% Similarity=0.388 Sum_probs=33.8
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
...|||.|||.++|+++|..+|++|.-.++|+++..+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~ 55 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDK 55 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecC
Confidence 4579999999999999999999999999999998644
No 70
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.67 E-value=3.4e-05 Score=55.78 Aligned_cols=37 Identities=11% Similarity=0.372 Sum_probs=32.8
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCC--ceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVG--YKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpG--FkEVRLVp~r 189 (195)
=++|||.|||.++|+++|..+|++|-. .++||++..+
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~ 47 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDK 47 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCS
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecC
Confidence 578999999999999999999999974 6799998644
No 71
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.66 E-value=4.3e-05 Score=52.77 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=31.3
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLV 186 (195)
+.+|||.|||.++|+++|..+|.+| ..++|++.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~ 37 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD 37 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe
Confidence 6789999999999999999999999 99999985
No 72
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.65 E-value=3.2e-05 Score=54.69 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=32.8
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 187 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp 187 (195)
+++|||.|||.++|+++|..+|.+|-..++|+++.
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~ 45 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK 45 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC
Confidence 78999999999999999999999999999998863
No 73
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.65 E-value=5.3e-05 Score=52.99 Aligned_cols=37 Identities=24% Similarity=0.471 Sum_probs=34.6
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus 12 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~ 48 (102)
T 1x5s_A 12 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR 48 (102)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCC
Confidence 7899999999999999999999999999999998753
No 74
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.64 E-value=6.6e-05 Score=53.95 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=34.6
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 53 (116)
T 2cqd_A 17 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDR 53 (116)
T ss_dssp SSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcC
Confidence 7899999999999999999999999999999998653
No 75
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.64 E-value=7.4e-05 Score=53.45 Aligned_cols=37 Identities=22% Similarity=0.397 Sum_probs=34.7
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 51 (115)
T 2dgo_A 15 HFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDM 51 (115)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence 8999999999999999999999999999999998653
No 76
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=97.63 E-value=8.5e-05 Score=53.10 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=35.8
Q ss_pred CCceEEecCCCCcc------cHHHHHhhccCCCCceEEEeeecCccCCC
Q 029297 152 ASSTLYVEGLPADS------TKREVAHIFRPFVGYKEVRLVIKESKLLN 194 (195)
Q Consensus 152 ~N~ILFVQNLP~d~------T~~eL~~LF~qFpGFkEVRLVp~r~~~~g 194 (195)
.+++|||.|||.++ |+++|..+|.+|.-.++|+++....+..|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G 62 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKG 62 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeee
Confidence 37899999999999 88999999999999999999843333333
No 77
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.63 E-value=6.5e-05 Score=52.78 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=34.4
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|.-.++|+++..+
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 51 (103)
T 2cqg_A 15 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDL 51 (103)
T ss_dssp CCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECS
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecC
Confidence 7889999999999999999999999999999998753
No 78
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.62 E-value=4.7e-05 Score=52.46 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=34.5
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus 16 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~ 52 (95)
T 2ywk_A 16 DRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR 52 (95)
T ss_dssp GGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC
Confidence 8899999999999999999999999999999998753
No 79
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.62 E-value=4.4e-05 Score=53.13 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=34.5
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 44 (99)
T 1whw_A 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDS 44 (99)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC
Confidence 7899999999999999999999999999999998654
No 80
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=97.61 E-value=6.2e-05 Score=54.42 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=33.8
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
.+++|||.|||.++|+++|..+|.+|.-.++|+++..+
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~ 61 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP 61 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECC
Confidence 47899999999999999999999999999999998754
No 81
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=8e-05 Score=52.09 Aligned_cols=39 Identities=21% Similarity=0.414 Sum_probs=32.9
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCcc
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK 191 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~ 191 (195)
.+++|||.|||.++|+++|..+|.+|--.+ ++++..+++
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~ 56 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPR 56 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTT
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCC
Confidence 378999999999999999999999997665 788765433
No 82
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.61 E-value=9.3e-05 Score=52.81 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=32.4
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceE-EEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKE-VRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkE-VRLVp~ 188 (195)
+.+|||.|||.++|+++|..+|.+|...++ |+|+..
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~ 51 (104)
T 1wg5_A 15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD 51 (104)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC
Confidence 789999999999999999999999987777 888754
No 83
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=7.2e-05 Score=52.36 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=33.2
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 187 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp 187 (195)
+++|||.|||.++|+++|..+|.+|-..++|+++.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~ 61 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP 61 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec
Confidence 78999999999999999999999999999999983
No 84
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.61 E-value=6e-05 Score=52.34 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=32.4
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+++|||.|||.++|+++|..+|.+|--.++++++..
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~ 50 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY 50 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEE
Confidence 789999999999999999999999988777877754
No 85
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.60 E-value=7.1e-05 Score=56.53 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=34.8
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus 39 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 75 (156)
T 1h2v_Z 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK 75 (156)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence 8999999999999999999999999999999998654
No 86
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.60 E-value=5e-05 Score=53.40 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=33.2
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 187 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp 187 (195)
.++|||.|||.++|+++|..+|++|--.++|+++.
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~ 45 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK 45 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee
Confidence 67999999999999999999999999999999885
No 87
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.60 E-value=4.3e-05 Score=52.85 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=33.5
Q ss_pred CCCCCCceEEecCCCCcccHHHHH----hhccCCCCceEEEee
Q 029297 148 LPPDASSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLV 186 (195)
Q Consensus 148 lPPd~N~ILFVQNLP~d~T~~eL~----~LF~qFpGFkEVRLV 186 (195)
.+| +++|||.|||.++|+++|. .+|.+|...++|+++
T Consensus 5 ~~~--~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~ 45 (97)
T 1nu4_A 5 TRP--NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS 45 (97)
T ss_dssp -CC--CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC
T ss_pred CCC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE
Confidence 345 8999999999999999999 999999999999887
No 88
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=97.60 E-value=8.7e-05 Score=56.84 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=32.4
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCce--EEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYK--EVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFk--EVRLVp~ 188 (195)
..+|||.|||.+||+++|..+|.+| +.+ +|+++..
T Consensus 42 ~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d 78 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVD 78 (126)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEEC
Confidence 6789999999999999999999999 888 8998854
No 89
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=97.59 E-value=8.2e-05 Score=55.82 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=34.9
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
++++|||.|||.++|+++|..+|.+|.-.++|+++..+
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~ 82 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ 82 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence 38899999999999999999999999999999998643
No 90
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.59 E-value=5.2e-05 Score=52.33 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=33.5
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEE-Eeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEV-RLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEV-RLVp~ 188 (195)
+++|||.|||.++|+++|..+|.+|--.++| +++..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~ 41 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRD 41 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEc
Confidence 7899999999999999999999999989899 88764
No 91
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.59 E-value=6e-05 Score=52.79 Aligned_cols=38 Identities=26% Similarity=0.644 Sum_probs=32.7
Q ss_pred CCCCCCCceEEecCCCC-cccHHHHHhhccCCCCceEEEee
Q 029297 147 PLPPDASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLV 186 (195)
Q Consensus 147 ~lPPd~N~ILFVQNLP~-d~T~~eL~~LF~qFpGFkEVRLV 186 (195)
..+| +++|||.|||. ++|+++|..+|.+|-..++|++.
T Consensus 6 ~~~~--~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~ 44 (96)
T 2kvi_A 6 NIPP--KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK 44 (96)
T ss_dssp ---C--CEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE
T ss_pred cCCC--CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe
Confidence 3456 89999999998 99999999999999999999884
No 92
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.59 E-value=3.4e-05 Score=53.18 Aligned_cols=36 Identities=11% Similarity=0.151 Sum_probs=32.9
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~ 50 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY 50 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEe
Confidence 689999999999999999999999988888888764
No 93
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.58 E-value=0.00012 Score=52.68 Aligned_cols=36 Identities=22% Similarity=0.420 Sum_probs=32.6
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
.++|||.|||.++|+++|..+|.+|- -++|+|+..+
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~ 50 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP 50 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC
Confidence 68999999999999999999999987 6799998654
No 94
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.57 E-value=5.9e-05 Score=50.96 Aligned_cols=37 Identities=16% Similarity=0.333 Sum_probs=34.2
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
.++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 40 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER 40 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCC
Confidence 5789999999999999999999999999999998754
No 95
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.57 E-value=4e-05 Score=55.73 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=33.1
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 187 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp 187 (195)
+++|||.|||.++|+++|..+|.+|-..++|+|++
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 44 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE 44 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC
Confidence 67999999999999999999999999999999875
No 96
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.56 E-value=7.5e-05 Score=52.56 Aligned_cols=37 Identities=19% Similarity=0.424 Sum_probs=34.3
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~ 59 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDR 59 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecC
Confidence 7899999999999999999999999999999998643
No 97
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.56 E-value=0.0001 Score=54.05 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=34.3
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
.++|||.|||.++|+++|..+|.+|--.++|+++-..
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~ 42 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHP 42 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECC
Confidence 7899999999999999999999999999999998543
No 98
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.56 E-value=4.5e-05 Score=52.54 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=32.7
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 187 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp 187 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++.
T Consensus 9 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~ 43 (90)
T 2dnp_A 9 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK 43 (90)
T ss_dssp SCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC
Confidence 78999999999999999999999999899999874
No 99
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=6.2e-05 Score=52.11 Aligned_cols=35 Identities=9% Similarity=0.101 Sum_probs=32.0
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 187 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp 187 (195)
+++|||.|||.++|+++|..+|.+|--.++||.|.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~ 49 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVN 49 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEEC
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEee
Confidence 78999999999999999999999999999997443
No 100
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.53 E-value=7.2e-05 Score=53.07 Aligned_cols=38 Identities=21% Similarity=0.432 Sum_probs=33.4
Q ss_pred CCCCCCCceEEecCCCC-cccHHHHHhhccCCCCceEEEee
Q 029297 147 PLPPDASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLV 186 (195)
Q Consensus 147 ~lPPd~N~ILFVQNLP~-d~T~~eL~~LF~qFpGFkEVRLV 186 (195)
..|+ +++|||.|||. ++|+++|..+|.+|-..++|++.
T Consensus 18 ~~~~--~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~ 56 (97)
T 2xnq_A 18 GSHM--KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK 56 (97)
T ss_dssp -CCT--TCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC
T ss_pred CCCC--CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe
Confidence 3445 89999999998 99999999999999989999883
No 101
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.53 E-value=7.1e-05 Score=49.55 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=32.5
Q ss_pred eEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 155 ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+|||.|||.++|+++|..+|++|...++|+++..+
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~ 36 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP 36 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCC
Confidence 59999999999999999999999999999998754
No 102
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.53 E-value=0.00039 Score=49.55 Aligned_cols=37 Identities=22% Similarity=0.530 Sum_probs=34.6
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+.+|||.|||.++|+++|..+|.+|-..++|+++..+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 61 (114)
T 1x5o_A 25 PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS 61 (114)
T ss_dssp TTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC
Confidence 6789999999999999999999999999999998764
No 103
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.52 E-value=6.7e-05 Score=53.29 Aligned_cols=37 Identities=16% Similarity=0.345 Sum_probs=34.4
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 26 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 62 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDR 62 (110)
T ss_dssp BEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC
Confidence 7899999999999999999999999999999997653
No 104
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.51 E-value=0.00011 Score=53.83 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=35.0
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
..++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 43 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR 43 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC
Confidence 36899999999999999999999999999999998754
No 105
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=97.51 E-value=6.7e-05 Score=56.58 Aligned_cols=37 Identities=14% Similarity=0.251 Sum_probs=34.4
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~ 83 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR 83 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC
Confidence 7899999999999999999999999999999998653
No 106
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.51 E-value=7.5e-05 Score=53.65 Aligned_cols=37 Identities=11% Similarity=0.305 Sum_probs=34.5
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
.++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~ 63 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDP 63 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC
Confidence 6899999999999999999999999999999998753
No 107
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.51 E-value=0.00012 Score=53.27 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=35.2
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
.+++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~ 71 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR 71 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC
Confidence 38899999999999999999999999999999998754
No 108
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.49 E-value=0.00012 Score=53.36 Aligned_cols=36 Identities=22% Similarity=0.506 Sum_probs=34.1
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+++|||.|||.++|+++|..+|.+|...++|+++..
T Consensus 63 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~ 98 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD 98 (140)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCC
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeec
Confidence 789999999999999999999999999999999865
No 109
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=97.48 E-value=0.00011 Score=56.36 Aligned_cols=37 Identities=16% Similarity=0.345 Sum_probs=34.7
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|-..++|+++..+
T Consensus 72 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~ 108 (165)
T 1rk8_A 72 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDR 108 (165)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecC
Confidence 8899999999999999999999999999999998653
No 110
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.48 E-value=0.00013 Score=53.48 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=33.5
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCC---ceEEEeeecC
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVG---YKEVRLVIKE 189 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpG---FkEVRLVp~r 189 (195)
...+|||.|||.++|+++|..+|.+|-- .++|+|+..+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~ 56 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR 56 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECC
Confidence 4789999999999999999999999865 7999998643
No 111
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.48 E-value=0.00019 Score=52.58 Aligned_cols=39 Identities=21% Similarity=0.464 Sum_probs=32.4
Q ss_pred CCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297 149 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 187 (195)
Q Consensus 149 PPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp 187 (195)
|+....+|||.|||.++|+++|..+|.+|--.+++.++.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~ 59 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIA 59 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence 344478999999999999999999999998777755554
No 112
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=97.47 E-value=5.8e-05 Score=53.67 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=34.4
Q ss_pred CceEEecCCCC------cccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPA------DSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~------d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||. ++|+++|..+|.+|--.++|+++..+
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~ 48 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDE 48 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEET
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcC
Confidence 78999999999 99999999999999999999998654
No 113
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.46 E-value=0.0001 Score=54.65 Aligned_cols=36 Identities=19% Similarity=0.365 Sum_probs=33.0
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
..+|||.|||.++|+++|..+|.+| +-++|+|+..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~ 51 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH 51 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC
Confidence 5799999999999999999999999 89999998543
No 114
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.46 E-value=0.00019 Score=50.20 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=29.2
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+++|||.|||.++|+++|..+|.+| -+|+++..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~---g~v~~~~~ 47 (101)
T 2fc9_A 15 SKTLVLSNLSYSATEETLQEVFEKA---TFIKVPQN 47 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHHCSSC---SEEECCBC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC---CEEEEEEC
Confidence 8999999999999999999999985 57777654
No 115
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.43 E-value=0.00013 Score=53.76 Aligned_cols=39 Identities=18% Similarity=0.366 Sum_probs=35.4
Q ss_pred CCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 151 d~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+..++|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~ 78 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDR 78 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence 347899999999999999999999999999999998654
No 116
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.43 E-value=0.00014 Score=56.60 Aligned_cols=40 Identities=25% Similarity=0.165 Sum_probs=34.1
Q ss_pred CCCCCceEE--ecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 149 PPDASSTLY--VEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 149 PPd~N~ILF--VQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
++.+|+||+ |.||+..+|+++|..||++|...++|+++..
T Consensus 22 ~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~ 63 (130)
T 3zzy_A 22 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK 63 (130)
T ss_dssp ---CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE
T ss_pred cCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC
Confidence 333488887 9999999999999999999999999999864
No 117
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.43 E-value=0.0002 Score=51.78 Aligned_cols=36 Identities=28% Similarity=0.477 Sum_probs=34.0
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+++|||.|||.++|+++|..+|.+|.-.++|+++..
T Consensus 26 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 61 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMD 61 (108)
T ss_dssp CEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEc
Confidence 789999999999999999999999999999999865
No 118
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.42 E-value=0.00019 Score=48.05 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=32.6
Q ss_pred ceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 154 ~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
.+|||.|||.++|+++|..+|.+|.-.++|+++..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~ 36 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD 36 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEc
Confidence 47999999999999999999999999999999865
No 119
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=97.41 E-value=0.00016 Score=49.09 Aligned_cols=37 Identities=16% Similarity=0.288 Sum_probs=33.9
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|.-.++|+++..+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 42 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDK 42 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecC
Confidence 5789999999999999999999999999999998653
No 120
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.40 E-value=7.6e-05 Score=53.23 Aligned_cols=36 Identities=25% Similarity=0.476 Sum_probs=33.9
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+++|||.|||.++|+++|..+|.+|-..++|+++..
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 60 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE 60 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC
Confidence 789999999999999999999999999999999864
No 121
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=97.37 E-value=0.00011 Score=51.41 Aligned_cols=37 Identities=22% Similarity=0.487 Sum_probs=34.6
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|++|...++|+++..+
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 45 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR 45 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC
Confidence 6899999999999999999999999999999998754
No 122
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.37 E-value=9.4e-05 Score=52.28 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=32.1
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCC-ceEEEee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVG-YKEVRLV 186 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpG-FkEVRLV 186 (195)
+++|||.|||.++|+++|..+|.+|-. .++|+++
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~ 42 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVY 42 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEE
Confidence 789999999999999999999999965 9999988
No 123
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.37 E-value=0.00013 Score=51.21 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=34.7
Q ss_pred CceEEecCCCCcccHHHHH----hhccCCCCceEEEeeecCc
Q 029297 153 SSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVIKES 190 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~----~LF~qFpGFkEVRLVp~r~ 190 (195)
++.|||.|||.++|+++|. .+|.+|--.++|+++..+.
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~ 50 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTD 50 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCC
Confidence 7899999999999999999 9999999999999986543
No 124
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.36 E-value=0.00013 Score=50.51 Aligned_cols=36 Identities=14% Similarity=0.236 Sum_probs=31.9
Q ss_pred ceEEecCCCCcccHHHHHhhccCCC--CceEEEeeecC
Q 029297 154 STLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKE 189 (195)
Q Consensus 154 ~ILFVQNLP~d~T~~eL~~LF~qFp--GFkEVRLVp~r 189 (195)
.+|||.|||.++|+++|..+|.+|. ..++|+++..+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~ 39 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENR 39 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecC
Confidence 4699999999999999999999998 89999998754
No 125
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.36 E-value=7.9e-05 Score=59.43 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=36.7
Q ss_pred CCCCCCCceEEecCCCC-cccHHHHHhhccCCCCceEEEeeecC
Q 029297 147 PLPPDASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 147 ~lPPd~N~ILFVQNLP~-d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
..++ +++|||.|||. ++|+++|..+|.+|-..++|+++..+
T Consensus 30 ~~~~--~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~ 71 (229)
T 2adc_A 30 AGAG--NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK 71 (229)
T ss_dssp GCCC--CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT
T ss_pred CCCC--CCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC
Confidence 3455 89999999999 99999999999999999999998754
No 126
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.35 E-value=0.00012 Score=51.17 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=34.3
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~ 44 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDR 44 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEET
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCC
Confidence 6899999999999999999999999999999998653
No 127
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.35 E-value=0.00016 Score=52.50 Aligned_cols=36 Identities=14% Similarity=0.350 Sum_probs=33.9
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+++|||.|||.++|+++|..+|.+|--..+|+|+..
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d 46 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT 46 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEEC
Confidence 689999999999999999999999999999999864
No 128
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.33 E-value=0.0002 Score=51.83 Aligned_cols=36 Identities=33% Similarity=0.477 Sum_probs=31.5
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
++.|||.|||.++|+++|..+|.+|--.+ ++++..+
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~ 43 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKA 43 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSS
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecC
Confidence 67899999999999999999999997776 7777543
No 129
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.32 E-value=0.00015 Score=52.25 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=34.5
Q ss_pred CceEEecCCCCcccHHHHH---hhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVA---HIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~---~LF~qFpGFkEVRLVp~r 189 (195)
.++|||.|||.++|+++|. .+|.+|--.++|+++..+
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~ 54 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNST 54 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCC
Confidence 7899999999999999999 999999999999998654
No 130
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=97.32 E-value=0.0002 Score=51.24 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=33.1
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCC---ceEEEeeecC
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVG---YKEVRLVIKE 189 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpG---FkEVRLVp~r 189 (195)
...+|||.|||.++|+++|..+|.+|-- .++|+++..+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~ 50 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR 50 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECC
Confidence 4789999999999999999999999644 7899998643
No 131
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.29 E-value=0.00014 Score=50.31 Aligned_cols=31 Identities=32% Similarity=0.480 Sum_probs=28.2
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLV 186 (195)
+++|||.|||.++|+++|..+|.+| -+|++|
T Consensus 16 ~~~l~V~nL~~~~t~~~l~~~F~~~---g~v~~~ 46 (96)
T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFEDA---LEIRLV 46 (96)
T ss_dssp GGEEEEESCCSSCCHHHHHHHHCSE---EEECCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC---CcEEEe
Confidence 7899999999999999999999985 677777
No 132
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=97.28 E-value=0.00017 Score=52.19 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=33.9
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+++|||.|||.++|+++|..+|.+|...++|+++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 71 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCD 71 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec
Confidence 689999999999999999999999999999999864
No 133
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.28 E-value=8.2e-05 Score=54.27 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=31.7
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 187 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp 187 (195)
++.|||.|||.++|+++|..+|.+|--.++|+++.
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~ 50 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR 50 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEec
Confidence 68899999999999999999999998889998864
No 134
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.27 E-value=0.00011 Score=55.15 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=34.0
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+++|||.|||.++|+++|..+|.+|...++|+++..
T Consensus 73 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 108 (150)
T 2i2y_A 73 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN 108 (150)
T ss_dssp SCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC
Confidence 789999999999999999999999999999999864
No 135
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.24 E-value=0.00026 Score=54.75 Aligned_cols=36 Identities=22% Similarity=0.425 Sum_probs=32.5
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
.++|||.|||.++|+++|..+|.+|- -++|+++..+
T Consensus 46 ~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~ 81 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP 81 (139)
T ss_dssp CCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC
Confidence 67999999999999999999999997 7899998543
No 136
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=97.23 E-value=0.00014 Score=48.04 Aligned_cols=34 Identities=21% Similarity=0.486 Sum_probs=31.4
Q ss_pred eEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 155 ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+|||.|||.++|+++|..+|++|.-.++|+++..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 34 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 34 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCS
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec
Confidence 4899999999999999999999999999998764
No 137
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=97.23 E-value=0.00019 Score=47.51 Aligned_cols=34 Identities=26% Similarity=0.551 Sum_probs=31.6
Q ss_pred EEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 156 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 156 LFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
|||.|||.++|+++|..+|++|.-.++|+++..+
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 35 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDK 35 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCS
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecC
Confidence 8999999999999999999999999999988654
No 138
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.23 E-value=0.00027 Score=55.86 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=35.1
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
.+.+|||.|||.++|+++|..+|.+|--.++|+++..+
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~ 124 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR 124 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence 48999999999999999999999999999999998754
No 139
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.20 E-value=0.00015 Score=49.04 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=30.0
Q ss_pred CceEEecCCCCcccHHHHHhhccCC----C-------CceEEEeee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPF----V-------GYKEVRLVI 187 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qF----p-------GFkEVRLVp 187 (195)
+++|||.|||.++|+++|..+|++| - -.++|++..
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~ 51 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ 51 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC
Confidence 7899999999999999999999998 3 366677653
No 140
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.20 E-value=0.0002 Score=49.35 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=28.7
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCC-ceEEEe
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVG-YKEVRL 185 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpG-FkEVRL 185 (195)
++.|||.|||.++|+++|..+|.+|-. .+.+.+
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~ 41 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL 41 (93)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE
Confidence 789999999999999999999999987 444444
No 141
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=97.18 E-value=0.00047 Score=51.94 Aligned_cols=37 Identities=11% Similarity=0.383 Sum_probs=34.6
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|...++|+++..+
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 140 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC
Confidence 6899999999999999999999999999999998754
No 142
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=97.18 E-value=0.00039 Score=53.47 Aligned_cols=37 Identities=14% Similarity=0.221 Sum_probs=33.0
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCC---ceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVG---YKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpG---FkEVRLVp~r 189 (195)
..+|||.|||.++|+++|..+|.+|-- .++|+++..+
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~ 83 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTR 83 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECC
Confidence 679999999999999999999999966 7899998543
No 143
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.15 E-value=0.0002 Score=50.06 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=32.0
Q ss_pred eEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 155 ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+|||.|||.++|+++|..+|.+|.-.++|+++..
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 35 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN 35 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC
Confidence 6999999999999999999999999999999865
No 144
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.15 E-value=0.00033 Score=52.52 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=34.1
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+.+|||.|||.++|+++|..+|.+|.-.++|+++..
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~ 105 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD 105 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeec
Confidence 789999999999999999999999999999999865
No 145
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.15 E-value=0.00024 Score=53.82 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=32.6
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCC----ceEEEeeec
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVG----YKEVRLVIK 188 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpG----FkEVRLVp~ 188 (195)
...+|||.|||.+||+++|..+|.+|-. .++|+|+..
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d 62 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY 62 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC
Confidence 3789999999999999999999999964 478999864
No 146
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.13 E-value=0.00056 Score=55.62 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=33.0
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 187 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp 187 (195)
+++|||.|||.++|+++|..+|.+|.-.++|+++.
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~ 56 (261)
T 3sde_A 22 RCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR 56 (261)
T ss_dssp GGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC
Confidence 78999999999999999999999999999999864
No 147
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.12 E-value=0.00057 Score=47.41 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=29.0
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEE
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEV 183 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEV 183 (195)
.+.|||.|||.++|+++|..+|.+|--.++|
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v 38 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV 38 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE
Confidence 6799999999999999999999999888877
No 148
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.09 E-value=0.00065 Score=51.94 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=34.6
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|...++|+++...
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~ 161 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDP 161 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECT
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecC
Confidence 6899999999999999999999999999999998753
No 149
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.0011 Score=48.05 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=34.2
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+++|||.|||.++|+++|..+|++|...++|+++..
T Consensus 87 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~ 122 (166)
T 3md3_A 87 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD 122 (166)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEEC
T ss_pred CceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEec
Confidence 789999999999999999999999999999999865
No 150
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=97.06 E-value=0.00012 Score=50.05 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=33.0
Q ss_pred ceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 154 ~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+.|||.|||.++|+++|..+|++|-..++|+++..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 37 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDR 37 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcC
Confidence 479999999999999999999999999999998653
No 151
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.05 E-value=0.00094 Score=48.92 Aligned_cols=37 Identities=22% Similarity=0.417 Sum_probs=34.6
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|++|...++|+++..+
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~ 125 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDK 125 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECT
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcC
Confidence 7899999999999999999999999999999998754
No 152
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.05 E-value=0.00038 Score=53.18 Aligned_cols=39 Identities=23% Similarity=0.432 Sum_probs=34.7
Q ss_pred CCCCCCceEEecCCCCcccHHHHHhhccCCC-CceEEEeeec
Q 029297 148 LPPDASSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIK 188 (195)
Q Consensus 148 lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFp-GFkEVRLVp~ 188 (195)
.|| +++|||.|||.++|+++|..+|.+|- -.++|++++.
T Consensus 117 ~~~--~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 117 FPP--SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCC--CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred CCC--ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 456 89999999999999999999999995 5689999874
No 153
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.04 E-value=0.00042 Score=50.97 Aligned_cols=37 Identities=16% Similarity=0.368 Sum_probs=34.5
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
++.|||.|||.++|+++|..+|++|...++|+++..+
T Consensus 95 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~ 131 (175)
T 3nmr_A 95 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP 131 (175)
T ss_dssp GSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred CCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC
Confidence 7899999999999999999999999999999998753
No 154
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.03 E-value=0.00034 Score=56.61 Aligned_cols=38 Identities=24% Similarity=0.208 Sum_probs=33.4
Q ss_pred Cce--EEecCCCCcccHHHHHhhccCCCCceEEEeeecCc
Q 029297 153 SST--LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKES 190 (195)
Q Consensus 153 N~I--LFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 190 (195)
+++ |||.|||..+|+++|..+|++|--.++|+++.+++
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~ 83 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN 83 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSS
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCC
Confidence 554 67999999999999999999999999999986553
No 155
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.01 E-value=0.00087 Score=49.45 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=34.5
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
.++|||.|||.++|+++|..+|++|...++|+++...
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~ 130 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS 130 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECT
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecC
Confidence 7899999999999999999999999999999998763
No 156
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=96.99 E-value=0.0004 Score=62.41 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=34.4
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
++++|||.|||.+||+++|..+|.+|.-.++|+|+..
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d 137 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYS 137 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeecc
Confidence 3789999999999999999999999999999999854
No 157
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=96.98 E-value=0.00056 Score=54.60 Aligned_cols=36 Identities=14% Similarity=0.350 Sum_probs=33.7
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+++|||.|||.++|+++|..+|.+|...++||++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~ 144 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT 144 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEEC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEEC
Confidence 589999999999999999999999999999999864
No 158
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=96.98 E-value=0.00051 Score=53.37 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=32.9
Q ss_pred CceEEecCCCCcccHHHHHhhccCCC--CceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFp--GFkEVRLVp~ 188 (195)
...|||.|||.++|+++|..+|.+|- -.++|+++..
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d 92 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAEN 92 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEec
Confidence 57999999999999999999999998 8999999865
No 159
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=96.97 E-value=0.00098 Score=50.27 Aligned_cols=39 Identities=26% Similarity=0.460 Sum_probs=35.5
Q ss_pred CCCceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 151 d~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
..+++|||.|||.++|+++|..+|.+|...++|+++...
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~ 150 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS 150 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecC
Confidence 348899999999999999999999999999999998653
No 160
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=96.97 E-value=0.00036 Score=52.01 Aligned_cols=38 Identities=8% Similarity=0.129 Sum_probs=32.1
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCC-CceEEEeeecC
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKE 189 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFp-GFkEVRLVp~r 189 (195)
.+..|||.|||.++|+++|..+|++|- -.+.|+++..+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~ 65 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD 65 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC
Confidence 377999999999999999999999996 57777776433
No 161
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=96.95 E-value=0.00063 Score=54.15 Aligned_cols=39 Identities=23% Similarity=0.432 Sum_probs=34.3
Q ss_pred CCCCCCceEEecCCCCcccHHHHHhhccCCC-CceEEEeeec
Q 029297 148 LPPDASSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIK 188 (195)
Q Consensus 148 lPPd~N~ILFVQNLP~d~T~~eL~~LF~qFp-GFkEVRLVp~ 188 (195)
.+| +++|||.|||.++|+++|..+|.+|- -.++|++++.
T Consensus 148 ~~~--~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~ 187 (229)
T 2adc_A 148 FPP--SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 187 (229)
T ss_dssp CCS--CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS
T ss_pred CCC--CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC
Confidence 455 89999999999999999999999995 5688999873
No 162
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=95.99 E-value=0.00013 Score=52.51 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=32.6
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceE--------EEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKE--------VRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkE--------VRLVp~ 188 (195)
+++|||.|||.++|+++|..+|.+|--.++ |+++..
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~ 50 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTD 50 (116)
Confidence 789999999999999999999999988887 787754
No 163
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=96.93 E-value=0.00085 Score=49.95 Aligned_cols=31 Identities=32% Similarity=0.482 Sum_probs=28.7
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLV 186 (195)
+++|||.|||.++|+++|..+|++ |.+|++|
T Consensus 99 ~~~l~v~nlp~~~t~~~l~~~F~~---~g~v~~~ 129 (175)
T 1fje_B 99 ARTLLAKNLSFNITEDELKEVFED---ALEIRLV 129 (175)
T ss_dssp GGEEEEESCCSSCCHHHHHHHCTT---CSEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh---cCeEEEe
Confidence 789999999999999999999998 4688888
No 164
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=96.92 E-value=0.0005 Score=54.19 Aligned_cols=39 Identities=13% Similarity=0.312 Sum_probs=35.1
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCcc
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK 191 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~ 191 (195)
.+.|||.|||.++|+++|..+|++|...++|+++..+.+
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~ 141 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 141 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCC
Confidence 568999999999999999999999999999999865443
No 165
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.87 E-value=0.00051 Score=47.98 Aligned_cols=31 Identities=10% Similarity=0.237 Sum_probs=26.8
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCceE
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKE 182 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkE 182 (195)
.+.+|||.|||.++|+++|..+|.+|-..++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~ 46 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND 46 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce
Confidence 3789999999999999999999998754444
No 166
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=96.86 E-value=0.00099 Score=48.43 Aligned_cols=37 Identities=27% Similarity=0.614 Sum_probs=34.4
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
++.|||.|||.++|+++|..+|++|...++|+++..+
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~ 124 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 124 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecC
Confidence 6789999999999999999999999999999998654
No 167
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=96.82 E-value=0.00044 Score=51.43 Aligned_cols=32 Identities=19% Similarity=0.490 Sum_probs=28.9
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCceEE
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEV 183 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEV 183 (195)
++++|||.|||.++|+++|..+|.+|...++|
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~ 75 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSE 75 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccc
Confidence 38999999999999999999999999877663
No 168
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.79 E-value=0.0023 Score=44.53 Aligned_cols=32 Identities=31% Similarity=0.430 Sum_probs=29.9
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLV 186 (195)
+++|||.|| ++|+++|..+|.+|--.++|++.
T Consensus 15 ~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~ 46 (97)
T 1x5p_A 15 GNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD 46 (97)
T ss_dssp CSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE
T ss_pred CCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec
Confidence 889999997 89999999999999999999985
No 169
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=96.77 E-value=0.00089 Score=51.17 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=33.7
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.++|+++|..+|.+|--.++|+++...
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~ 64 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDS 64 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecC
Confidence 7899999999999999999999999989999998643
No 170
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=96.77 E-value=0.0012 Score=54.14 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=33.2
Q ss_pred CceEEecCCCCcccHHHHHhhccCCC--CceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFp--GFkEVRLVp~r 189 (195)
...|||.|||.++|+++|..+|.+|- -.++|+|+..+
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~ 106 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENR 106 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECT
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecC
Confidence 56799999999999999999999998 89999998653
No 171
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=96.75 E-value=0.00075 Score=54.72 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=34.9
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecCcc
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK 191 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~ 191 (195)
+.+|||.|||.++|+++|..+|.+|.-.++|+++.....
T Consensus 41 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~ 79 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK 79 (292)
T ss_dssp -CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC
Confidence 889999999999999999999999999999999985433
No 172
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=96.74 E-value=0.0014 Score=49.81 Aligned_cols=38 Identities=8% Similarity=0.183 Sum_probs=32.4
Q ss_pred CCCCCCceEEecCCCCcccHHHHH----hhccCCCCceEEEeee
Q 029297 148 LPPDASSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVI 187 (195)
Q Consensus 148 lPPd~N~ILFVQNLP~d~T~~eL~----~LF~qFpGFkEVRLVp 187 (195)
.+| +++|||.|||.++|+++|. .+|++|--..+|++..
T Consensus 26 ~~p--~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~ 67 (127)
T 2a3j_A 26 TEP--SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL 67 (127)
T ss_dssp CSC--CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC
T ss_pred CCC--CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc
Confidence 455 8999999999999998765 7999999899998753
No 173
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=96.62 E-value=0.001 Score=48.83 Aligned_cols=37 Identities=16% Similarity=0.440 Sum_probs=34.3
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
++.|||.|||.++|+++|..+|++|...++|+++..+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 123 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK 123 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC
Confidence 7799999999999999999999999999999998653
No 174
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=96.42 E-value=0.0034 Score=46.57 Aligned_cols=33 Identities=30% Similarity=0.413 Sum_probs=30.5
Q ss_pred CCceEEecCCCCcccHHHHHhhccCCCCceEEEee
Q 029297 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186 (195)
Q Consensus 152 ~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLV 186 (195)
.+++|||.|| ++|+++|..+|.+|--.++|+++
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~ 70 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD 70 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe
Confidence 4889999997 69999999999999999999986
No 175
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=96.42 E-value=0.0028 Score=51.11 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=29.9
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEe
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRL 185 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRL 185 (195)
+++|||.|||.++|+++|..+|.+|. .++|++
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~ 53 (284)
T 3smz_A 22 RRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV 53 (284)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE
Confidence 78999999999999999999999995 888887
No 176
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=96.33 E-value=0.0053 Score=49.50 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=33.9
Q ss_pred CceEEecCCCCc-ccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d-~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.+ +|+++|..+|.+|...++|+++..+
T Consensus 184 ~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~ 221 (284)
T 3smz_A 184 SRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ 221 (284)
T ss_dssp CSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS
T ss_pred ccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC
Confidence 789999999999 5999999999999999999988753
No 177
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.31 E-value=0.0014 Score=49.89 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=32.6
Q ss_pred CceEEe--cCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYV--EGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFV--QNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
++.||| -||+.++|+++|..+|.+|--.++|++++.
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~ 62 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN 62 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC
Confidence 889999 669999999999999999998899988753
No 178
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.27 E-value=0.003 Score=53.52 Aligned_cols=36 Identities=22% Similarity=0.413 Sum_probs=33.8
Q ss_pred CceEEecCCCCcc---------cHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADS---------TKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~---------T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+++|||.|||.++ |+++|..+|.+|--.++|+++..
T Consensus 134 ~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~ 178 (240)
T 3u1l_A 134 NKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES 178 (240)
T ss_dssp CCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG
T ss_pred CceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC
Confidence 8999999999998 89999999999999999999864
No 179
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.19 E-value=0.0035 Score=47.46 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=25.3
Q ss_pred CCCCCCCce-EEecCCCCcccHHH----HHhhccCCC
Q 029297 147 PLPPDASST-LYVEGLPADSTKRE----VAHIFRPFV 178 (195)
Q Consensus 147 ~lPPd~N~I-LFVQNLP~d~T~~e----L~~LF~qFp 178 (195)
..|| |++ |||.|||.++++++ |..||.+|-
T Consensus 4 ~~~p--~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yG 38 (96)
T 2diu_A 4 GSSG--CHTLLYVYNLPANKDGKSVSNRLRRLSDNCG 38 (96)
T ss_dssp SCCC--SSEEEEEESCCTTSCHHHHHHHHHHHHHTTT
T ss_pred CCCC--cceEEEEeCCCCcCCHHHHHHHHHHHHHHcC
Confidence 3567 888 77999999999887 568999995
No 180
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.08 E-value=0.0061 Score=47.11 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=37.2
Q ss_pred CCCCCCCCceEEecCCCCc-ccHHHHHhhccCCCCceEEEeeecCc
Q 029297 146 LPLPPDASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKES 190 (195)
Q Consensus 146 ~~lPPd~N~ILFVQNLP~d-~T~~eL~~LF~qFpGFkEVRLVp~r~ 190 (195)
..+|+ +-||+|.||+.+ ||+++|..+|++|.-.+.|.++....
T Consensus 13 ~~~~~--G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~ 56 (121)
T 1owx_A 13 LEEKI--GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK 56 (121)
T ss_dssp CSCCC--CCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS
T ss_pred ccccC--CeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC
Confidence 45778 999999999999 99999999999998888887776543
No 181
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=96.00 E-value=0.0037 Score=50.59 Aligned_cols=37 Identities=8% Similarity=0.240 Sum_probs=34.5
Q ss_pred CceEEecCCCCc-ccHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP~d-~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|||.|||.+ +|+++|..+|.+|...+.|+++...
T Consensus 210 ~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~ 247 (292)
T 2ghp_A 210 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQ 247 (292)
T ss_dssp TTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCC
T ss_pred CceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecC
Confidence 789999999999 9999999999999999999998743
No 182
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=95.92 E-value=0.0061 Score=49.48 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=33.9
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+++|||.|||.++|+++|..+|.+|.-.++|+++..
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 131 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD 131 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC
Confidence 678999999999999999999999999999999865
No 183
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=95.16 E-value=0.007 Score=45.00 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=32.6
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 187 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp 187 (195)
+.-|||.||+..+|+++|..||.+|--.++++++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~ 41 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL 41 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC
Confidence 55689999999999999999999999999999976
No 184
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=94.98 E-value=0.018 Score=51.04 Aligned_cols=36 Identities=8% Similarity=0.108 Sum_probs=32.5
Q ss_pred CceEEecC--CCCcccHHHHHhhccCCCCceEEEeeec
Q 029297 153 SSTLYVEG--LPADSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQN--LP~d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
+++|||-| |+.++|+++|..+|.+|---++|++.+.
T Consensus 18 s~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~ 55 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN 55 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC
Confidence 89999999 5789999999999999988899998763
No 185
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=93.32 E-value=0.1 Score=40.03 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=30.9
Q ss_pred CCCCCceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297 149 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 187 (195)
Q Consensus 149 PPd~N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp 187 (195)
-|...|+|+| +.|.++...+|..||++|- -..|+.|.
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~Wid 48 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWID 48 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEE
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEc
Confidence 3456899999 9999999999999999996 45566664
No 186
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.60 E-value=0.26 Score=35.25 Aligned_cols=34 Identities=12% Similarity=0.267 Sum_probs=28.1
Q ss_pred CceEEecCC--CCcc---------cHHHHHhhccCCCCceEEEee
Q 029297 153 SSTLYVEGL--PADS---------TKREVAHIFRPFVGYKEVRLV 186 (195)
Q Consensus 153 N~ILFVQNL--P~d~---------T~~eL~~LF~qFpGFkEVRLV 186 (195)
+++|+|.|| |.++ ++++|..+|.+|--.++|.+.
T Consensus 15 s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~ 59 (112)
T 2dit_A 15 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF 59 (112)
T ss_dssp CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE
T ss_pred ceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe
Confidence 899999999 4332 368999999999999999653
No 187
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.48 E-value=0.27 Score=35.80 Aligned_cols=34 Identities=9% Similarity=0.074 Sum_probs=27.5
Q ss_pred CceEEecCCC-------CcccHHHHHhhccCCCCceEEEee
Q 029297 153 SSTLYVEGLP-------ADSTKREVAHIFRPFVGYKEVRLV 186 (195)
Q Consensus 153 N~ILFVQNLP-------~d~T~~eL~~LF~qFpGFkEVRLV 186 (195)
.+.|.|.-.. .++|+++|..+|.+|-..++|+++
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~ 50 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS 50 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc
Confidence 3455555544 568999999999999999999998
No 188
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=90.25 E-value=0.15 Score=39.08 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=29.1
Q ss_pred CceEEecCCCCcccHHHHHhhccCCCCceEEEeee
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 187 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp 187 (195)
.|+|+| +.|.++...+|..||++|- -..|+.|.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~Wid 38 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWID 38 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEE
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEc
Confidence 689999 9999999999999999995 56677765
No 189
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=88.16 E-value=0.52 Score=34.15 Aligned_cols=37 Identities=3% Similarity=0.044 Sum_probs=30.9
Q ss_pred CCceEEecCCCC-----cccHHHHHhhccCCCCceEEEeeec
Q 029297 152 ASSTLYVEGLPA-----DSTKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 152 ~N~ILFVQNLP~-----d~T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
++++|+|.||.. +-++++|..+|++|---++|+++..
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~ 48 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEI 48 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecC
Confidence 389999999973 3378999999999999999998754
No 190
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=78.26 E-value=2.2 Score=31.41 Aligned_cols=36 Identities=14% Similarity=0.300 Sum_probs=32.0
Q ss_pred EEecCCCCcccHHHHHhhccCCCCceEEEeeecCcc
Q 029297 156 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK 191 (195)
Q Consensus 156 LFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r~~ 191 (195)
|.|.+||+..|++++.+.+...+-+.-.+.|++...
T Consensus 4 vVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s 39 (91)
T 1uw4_A 4 VVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTS 39 (91)
T ss_dssp EEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCS
T ss_pred EEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccC
Confidence 679999999999999999999988888889888743
No 191
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=74.72 E-value=3 Score=29.96 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=30.3
Q ss_pred CceEEecCC--CCccc--------HHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGL--PADST--------KREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNL--P~d~T--------~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
+++|+|.|+ |.+.. +++|...|++|---++|+++..+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~ 51 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPV 51 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCB
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccC
Confidence 899999998 55543 46899999999999999987544
No 192
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=74.65 E-value=2.7 Score=31.24 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=30.5
Q ss_pred CceEEecCCC--Ccc---cHHHHHhhccCCCCceEEEeeecC
Q 029297 153 SSTLYVEGLP--ADS---TKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 153 N~ILFVQNLP--~d~---T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
++||+|.|+- .++ .+++|...|.+|---++|+++..+
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~ 61 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEK 61 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecC
Confidence 8999999994 332 467899999999999999988654
No 193
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.31 E-value=5.2 Score=30.46 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=24.3
Q ss_pred ceEEecCCCCcc-c----HHHHHhhccCCC---------CceEEEee
Q 029297 154 STLYVEGLPADS-T----KREVAHIFRPFV---------GYKEVRLV 186 (195)
Q Consensus 154 ~ILFVQNLP~d~-T----~~eL~~LF~qFp---------GFkEVRLV 186 (195)
++|+|.||+.++ + +++++.||++|. -|+.||+.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~ 52 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRIN 52 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEE
Confidence 479999999877 2 367889988754 56666654
No 194
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=63.07 E-value=3.9 Score=30.70 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=28.2
Q ss_pred eEEecCCCCcccHHHHHhhccCCCCceEEEeeecC
Q 029297 155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 189 (195)
Q Consensus 155 ILFVQNLP~d~T~~eL~~LF~qFpGFkEVRLVp~r 189 (195)
=|.|..||+..|++++.+.+...+...-.+.|++.
T Consensus 11 KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~ 45 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAAD 45 (97)
T ss_dssp CEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCC
T ss_pred eEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCc
Confidence 38899999999999999999887765555566654
No 195
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.81 E-value=5.4 Score=30.51 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=22.0
Q ss_pred CceEEecCCCCcccHHHHHhhccC
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRP 176 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~q 176 (195)
-+.+.|+|||+++.++.|+..|..
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn 31 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFEN 31 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHC
T ss_pred ccEEEEECCCCCCChhHheEEEeC
Confidence 578999999999999999999974
No 196
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=45.02 E-value=4.1 Score=29.11 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=25.6
Q ss_pred ecCCCCcccHHHHHhhc------------cCCCCceEEEeeecC
Q 029297 158 VEGLPADSTKREVAHIF------------RPFVGYKEVRLVIKE 189 (195)
Q Consensus 158 VQNLP~d~T~~eL~~LF------------~qFpGFkEVRLVp~r 189 (195)
+.|||.++|+++|...| ++|---++|+++..+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~ 63 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL 63 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC
Confidence 56788888888888777 999999999998644
No 197
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=38.78 E-value=22 Score=28.30 Aligned_cols=29 Identities=3% Similarity=0.117 Sum_probs=26.0
Q ss_pred CCcccHHHHHhhccCCCCceEEEeeecCc
Q 029297 162 PADSTKREVAHIFRPFVGYKEVRLVIKES 190 (195)
Q Consensus 162 P~d~T~~eL~~LF~qFpGFkEVRLVp~r~ 190 (195)
|..+|+.+|..+|.+|---++|+++--+-
T Consensus 15 ~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~ 43 (136)
T 2j8a_A 15 TTNIQDISIKNYFKKYGEISHFEAFNDPN 43 (136)
T ss_dssp CCCCCHHHHHHHHHTTSCCSEEEEEECTT
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 89999999999999999999999986543
No 198
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=31.02 E-value=38 Score=26.52 Aligned_cols=36 Identities=8% Similarity=0.132 Sum_probs=32.6
Q ss_pred CceEEecCCCCcccHHHHHhhccCC-----CCceEEEeeec
Q 029297 153 SSTLYVEGLPADSTKREVAHIFRPF-----VGYKEVRLVIK 188 (195)
Q Consensus 153 N~ILFVQNLP~d~T~~eL~~LF~qF-----pGFkEVRLVp~ 188 (195)
-++|-|=|||+.+++..+..|...+ ..|+.|=|||.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD 61 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD 61 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC
Confidence 5789999999999999999999988 88999999874
No 199
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=30.78 E-value=91 Score=22.69 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=28.0
Q ss_pred CCceEEecCCCCcc----------cHHHHHhhccCCCCceEEEeeec
Q 029297 152 ASSTLYVEGLPADS----------TKREVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 152 ~N~ILFVQNLP~d~----------T~~eL~~LF~qFpGFkEVRLVp~ 188 (195)
++++|.|.|+=..- .+++|...|.+|---++|++...
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~ 52 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN 52 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC
Confidence 47899999984321 23578999999999999987543
No 200
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.56 E-value=66 Score=23.67 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=24.6
Q ss_pred CCCCCCceEEecCCCC----cc-cH---HHHHhhccCCCCceEEEeeec
Q 029297 148 LPPDASSTLYVEGLPA----DS-TK---REVAHIFRPFVGYKEVRLVIK 188 (195)
Q Consensus 148 lPPd~N~ILFVQNLP~----d~-T~---~eL~~LF~qFpGFkEVRLVp~ 188 (195)
-|||++ ++|+-.|. ++ .+ .+|...|.+|---..||++-.
T Consensus 4 GPpd~t--v~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d 50 (91)
T 2dnr_A 4 GSSGGT--VLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED 50 (91)
T ss_dssp CCSSCE--EEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred CCCCCe--EEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC
Confidence 467555 55555542 22 22 568888999887788887754
Done!