BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029298
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures
Length = 135
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 81/135 (60%), Gaps = 7/135 (5%)
Query: 60 FLFDHNLVRAMKWELPLMWDYDLEKYARWWANQRKADCKLQHSFPEDNFKLGENIFWGSG 119
+L HN RA P+ WD +L A+ +AN R DC L HS +N G G
Sbjct: 7 YLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGAGENLAKG-------G 59
Query: 120 STWTPRDAVSVWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCDSGDVFM 179
+T R AV +W E Y YATN C G++C HYTQ+VW+N+ R+GC R C++G F+
Sbjct: 60 GDFTGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGWWFI 119
Query: 180 TCNYDPVGNYVGERP 194
+CNYDPVGN++G+RP
Sbjct: 120 SCNYDPVGNWIGQRP 134
>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride
pdb|3Q2U|A Chain A, Structure Of Human Glioma Pathogenesis-Related Protein 1
Reveals Unique Loops And Surface Motifs
Length = 205
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 74 LPLMWDYDLEKYARWWANQ----RKADCKLQHSFPEDNFKLGENIFWGSGSTWTPRDAVS 129
L + WD L + A+ WA+ K H + LGENI+ GS ++ A++
Sbjct: 41 LYMTWDPALAQIAKAWASNCQFSHNTRLKPPHKLHPNFTSLGENIWTGSVPIFSVSSAIT 100
Query: 130 VWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCD--------SGDVFMTC 181
W E + Y + T C+ + CGHYTQ+VW ++ ++GCA C S C
Sbjct: 101 NWYDEIQDYDFKTRICK--KVCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFIC 158
Query: 182 NYDPVGNY 189
NY P GNY
Sbjct: 159 NYGPGGNY 166
>pdb|2DDA|A Chain A, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|B Chain B, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|C Chain C, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|D Chain D, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
Length = 211
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 59/144 (40%), Gaps = 16/144 (11%)
Query: 59 QFLFDHNLVR-----AMKWELPLMWDYDLEKYARWWANQRKADCKLQHSFPED----NFK 109
+ + HN +R + L + W+ + A+ WAN+ C HS P +
Sbjct: 9 EIVDKHNALRRSVKPTARNMLQMKWNSRAAQNAKRWANR----CTFAHSPPNKRTVGKLR 64
Query: 110 LGENIFWGSGS-TWTPRDAVSVWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCA 168
GENIF S W+ V W E K + Y G GHYTQ+VW + IGCA
Sbjct: 65 CGENIFMSSQPFPWS--GVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSYLIGCA 122
Query: 169 RVVCDSGDVFMTCNYDPVGNYVGE 192
C S C Y P GN G
Sbjct: 123 SAKCSSSKYLYVCQYCPAGNIRGS 146
>pdb|2DDB|A Chain A, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|B Chain B, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|C Chain C, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|D Chain D, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|A Chain A, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|B Chain B, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|C Chain C, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|D Chain D, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
Length = 210
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 59/144 (40%), Gaps = 16/144 (11%)
Query: 59 QFLFDHNLVR-----AMKWELPLMWDYDLEKYARWWANQRKADCKLQHSFPE----DNFK 109
+ + HN +R + L + W+ + A+ WA++ C HS P +
Sbjct: 8 EIVDKHNALRRSVKPTARNMLQMKWNSHAAQNAKRWADR----CTFAHSPPNTRTVGKLR 63
Query: 110 LGENIFWGSGS-TWTPRDAVSVWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCA 168
GENIF S W+ V W E K + Y G GHYTQ+VW + IGCA
Sbjct: 64 CGENIFMSSQPFPWS--GVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSHLIGCA 121
Query: 169 RVVCDSGDVFMTCNYDPVGNYVGE 192
C S C Y P GN G
Sbjct: 122 SAKCSSSKYLYVCQYCPAGNIRGS 145
>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
pdb|1XTA|B Chain B, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
Length = 221
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 59/128 (46%), Gaps = 17/128 (13%)
Query: 74 LPLMWDYDLEKYARWWANQRKADCKLQHSFPEDNFKL------GENIFWGSGS-TWTPRD 126
L + W + A WAN C L HS DN ++ GE+I+ S + TWT +
Sbjct: 37 LKMEWYPEAASNAERWANT----CSLNHS--PDNLRVLEGIQCGESIYMSSNARTWT--E 88
Query: 127 AVSVWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCDSG--DVFMTCNYD 184
+ +W E K + Y G GHYTQIVW T R GCA C S F C Y
Sbjct: 89 IIHLWHDEYKNFVYGVGASPPGSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQYC 148
Query: 185 PVGNYVGE 192
P GN+ G+
Sbjct: 149 PSGNFQGK 156
>pdb|1SMB|A Chain A, Crystal Structure Of Golgi-Associated Pr-1 Protein
Length = 154
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 59 QFLFDHNLVRAMKWELPLMWDYDLEKYARWWANQRKADCKLQHSFPEDNFKLGENIFWGS 118
+ L HN R PL +L + A+ ++ + L+HS + GEN+ W S
Sbjct: 12 EVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQXGENLAWAS 71
Query: 119 GSTWTPRDAVSVWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCDSGDVF 178
T ++ W E K Y + G GH+T +VWKNT+++G + G F
Sbjct: 72 -YDQTGKEVADRWYSEIKNYNFQQPGFTSG--TGHFTAMVWKNTKKMGVGKASASDGSSF 128
Query: 179 MTCNYDPVGNYVGE 192
+ Y P GN V E
Sbjct: 129 VVARYFPAGNVVNE 142
>pdb|1XX5|A Chain A, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|B Chain B, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|C Chain C, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|2GIZ|A Chain A, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|2GIZ|B Chain B, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|3MZ8|A Chain A, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
pdb|3MZ8|B Chain B, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
Length = 221
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 59/128 (46%), Gaps = 17/128 (13%)
Query: 74 LPLMWDYDLEKYARWWANQRKADCKLQHSFPEDNFKL------GENIFWGSGS-TWTPRD 126
L + W + A WAN C L HS DN ++ GE+I+ S + TWT +
Sbjct: 37 LKMEWYPEAASNAERWANT----CSLNHS--PDNLRVLEGIQCGESIYMSSNARTWT--E 88
Query: 127 AVSVWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCDSG--DVFMTCNYD 184
+ +W E K + Y G GHYTQIVW T R GCA C S F C Y
Sbjct: 89 IIHLWHDEYKNFVYGVGANPPGSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQYC 148
Query: 185 PVGNYVGE 192
P GN+ G+
Sbjct: 149 PSGNFQGK 156
>pdb|2VZN|A Chain A, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
pdb|2VZN|B Chain B, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
Length = 218
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 63/134 (47%), Gaps = 18/134 (13%)
Query: 76 LMWDYDLEKYARWWANQRKADCKLQHSFPE--DNFKLGENIFWGSGS---TWTPRDAVSV 130
L WD +L A+ WANQ C +H + F +G+NI S S TP + + +
Sbjct: 79 LTWDPELATIAQRWANQ----CTFEHDACRNVERFAVGQNIAATSSSGKNKSTPNEMILL 134
Query: 131 WAGEEKYY-----TYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCDSGDV----FMTC 181
W E K + + + + GHYTQIVW T +IGC R++ D ++ C
Sbjct: 135 WYNEVKDFDNRWISSFPSDDNILMKVGHYTQIVWAKTTKIGCGRIMFKEPDNWTKHYLVC 194
Query: 182 NYDPVGNYVGERPY 195
NY P GN +G Y
Sbjct: 195 NYGPAGNVLGAPIY 208
>pdb|4AIW|A Chain A, Gapr-1 With Bound Inositol Hexakisphosphate
Length = 154
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 59 QFLFDHNLVRAMKWELPLMWDYDLEKYARWWANQRKADCKLQHSFPEDNFKLGENIFWGS 118
+ L HN R PL +L + A+ ++ + L+HS + GEN+ W S
Sbjct: 12 EVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWAS 71
Query: 119 GSTWTPRDAVSVWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCDSGDVF 178
T ++ W E K Y + G GH+T +VWKNT+++G + G F
Sbjct: 72 -YDQTGKEVADRWYSEIKNYNFQQPGFTSG--TGHFTAMVWKNTKKMGVGKASASDGSSF 128
Query: 179 MTCNYDPVGNYVGE 192
+ Y P GN V E
Sbjct: 129 VVARYFPAGNVVNE 142
>pdb|3NT8|A Chain A, Crystal Structure Of Na-Asp-1
pdb|3NT8|B Chain B, Crystal Structure Of Na-Asp-1
Length = 424
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 64/142 (45%), Gaps = 17/142 (11%)
Query: 65 NLVRAMKWELPLMWDYDLEKYARWWANQRKADCKLQHSFPEDNFKLGENIFWGS----GS 120
N +A K L +++D ++E A N+ C QHS ED LGENI+ S
Sbjct: 264 NAPKAAKM-LKMVYDCEVEASAIRHGNK----CVYQHSHGEDRPGLGENIYKTSVLKFDK 318
Query: 121 TWTPRDAVSVWAGEEKYYTYATNTC-------QEGQQCGHYTQIVWKNTRRIGCARVVCD 173
+ A +W E K Y + + Q GHYTQ+ W T ++GCA V C+
Sbjct: 319 NKAAKQASQLWWNELKEYGVGPSNVLTTALWNRPNMQIGHYTQMAWDTTYKLGCAVVFCN 378
Query: 174 SGDVFMTCNYDPVGNYVGERPY 195
F C Y P GNY+G Y
Sbjct: 379 D-FTFGVCQYGPGGNYMGHVIY 399
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 154 YTQIVWKNTRRIGCARVVCDSGDVFMTCNYDPVGNYVGERP 194
++ +V+ T ++GCA VC + + ++C Y+ VG Y+ +P
Sbjct: 149 FSNMVYSETTKLGCAYKVCGT-KLAVSCIYNGVG-YITNQP 187
>pdb|1U53|A Chain A, Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein From The
Nematode Parasite Necator Americanus And A Vaccine
Antigen For Human Hookworm Infection
Length = 196
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 65 NLVRAMKWELPLMWDYDLEKYARWWANQRKADCKLQHSFPEDNFKLGENIFWGSGSTW-- 122
N +A K + + +D ++EK A A Q C +HS P LGENIF S S
Sbjct: 43 NAPKAAKMKT-MAYDCEVEKTAMNNAKQ----CVFKHSQPNQRKGLGENIFMSSDSGMDK 97
Query: 123 --TPRDAVSVWAGEEKYYTYATNTCQEG----QQCGHYTQIVWKNTRRIGCARVVCDSGD 176
A W GE N G + GHYTQ+VW+ T ++GC C S
Sbjct: 98 AKAAEQASKAWFGELAEKGVGQNLKLTGGLFSRGVGHYTQMVWQETVKLGCYVEAC-SNM 156
Query: 177 VFMTCNYDPVGNYVGERPY 195
++ C Y P GN +G+ Y
Sbjct: 157 CYVVCQYGPAGNMMGKDIY 175
>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker
Derived From Snake Venom
Length = 221
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 108 FKLGENIFWGS-GSTWTPRDAVSVWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIG 166
K GENI+ + + WT D + W GE K + Y GHYTQIVW + R G
Sbjct: 71 IKCGENIYMATYPAKWT--DIIHAWHGEYKDFKYGVGAVPSDAVIGHYTQIVWYKSYRAG 128
Query: 167 CARVVCDSG--DVFMTCNYDPVGNYVGE 192
CA C S F C Y P GN +G+
Sbjct: 129 CAAAYCPSSKYSYFYVCQYCPAGNIIGK 156
>pdb|1RC9|A Chain A, Crystal Structure Of Stecrisp, A Member Of Crisp Family
From Trimeresurus Stejnegeri Refined At 1.6 Angstroms
Resolution: Structual Relationship Of The Two Domains
Length = 221
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 106 DNFKLGENIFWGS-GSTWTPRDAVSVWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRR 164
+ K GENI+ WT D + W E K + Y GHYTQIVW + R
Sbjct: 69 EGIKCGENIYMSPYPMKWT--DIIHAWHDEYKDFKYGVGADPPNAVTGHYTQIVWYKSYR 126
Query: 165 IGCARVVCDSG--DVFMTCNYDPVGNYVGE 192
IGCA C S F C Y P GN++G+
Sbjct: 127 IGCAAAYCPSSPYSYFFVCQYCPAGNFIGK 156
>pdb|1QNX|A Chain A, Ves V 5, An Allergen From Vespula Vulgaris Venom
Length = 209
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 15/130 (11%)
Query: 76 LMWDYDLEKYARWWANQRKADCKLQHSFPED--NFKLGENIFWGSGSTWT----PRDAVS 129
L+W+ +L A+ WANQ C+ H D +++G+N+ +GST P V
Sbjct: 82 LVWNDELAYVAQVWANQ----CQYGHDTCRDVAKYQVGQNVAL-TGSTAAKYDDPVKLVK 136
Query: 130 VWAGEEKYYTYATN-TCQEGQQCGHYTQIVWKNTRRIGCARVVCDS---GDVFMTCNYDP 185
+W E K Y + + + GHYTQ+VW NT+ +GC + ++ CNY P
Sbjct: 137 MWEDEVKDYNPKKKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGP 196
Query: 186 VGNYVGERPY 195
GN+ E Y
Sbjct: 197 SGNFKNEELY 206
>pdb|3QZ4|A Chain A, Crystal Structure Of An Endo-1,4-Beta-Xylanase D (Bt_3675)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.74 A
Resolution
pdb|3QZ4|B Chain B, Crystal Structure Of An Endo-1,4-Beta-Xylanase D (Bt_3675)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.74 A
Resolution
Length = 311
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 108 FKLGENIFWGSGSTWTPRDAVSVWAGEEKYYTY--ATNTCQEGQQCG 152
+ G+N+ W +G+ W P G+ KY+ Y A T +G+Q G
Sbjct: 64 LEXGKNVSWANGNAWAPCIEEKKIDGKYKYFFYYSANPTTNKGKQIG 110
>pdb|1W7W|A Chain A, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|B Chain B, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|C Chain C, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|D Chain D, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|E Chain E, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|F Chain F, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization
Length = 182
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 110 LGENIFWGSGSTWTPRDAVSVWAGEEKYYTYATNT 144
+G NI GS T +D + +W E+ ++ +N+
Sbjct: 140 VGRNIIHGSDGPETAKDEIKLWFKPEELVSFTSNS 174
>pdb|3E6U|A Chain A, Crystal Structure Of Human Lancl1
pdb|3E6U|C Chain C, Crystal Structure Of Human Lancl1
pdb|3E6U|B Chain B, Crystal Structure Of Human Lancl1
pdb|3E6U|D Chain D, Crystal Structure Of Human Lancl1
pdb|3E73|A Chain A, Crystal Structure Of Human Lancl1 Complexed With Gsh
pdb|3E73|B Chain B, Crystal Structure Of Human Lancl1 Complexed With Gsh
Length = 411
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 49 LCWGCIGEALQFLFDHNLVRAMKWELPLMWDYDLEKYARWWANQRKADCKLQHSFPEDNF 108
LC G G A FL +NL + MK+ Y K+A W + C+ P+ F
Sbjct: 333 LCHGSAGNAYAFLTLYNLTQDMKYL------YRACKFAEWCLEYGEHGCRT----PDTPF 382
Query: 109 KLGENI 114
L E +
Sbjct: 383 SLFEGM 388
>pdb|3HBR|A Chain A, Crystal Structure Of Oxa-48 Beta-Lactamase
pdb|3HBR|B Chain B, Crystal Structure Of Oxa-48 Beta-Lactamase
pdb|3HBR|C Chain C, Crystal Structure Of Oxa-48 Beta-Lactamase
pdb|3HBR|D Chain D, Crystal Structure Of Oxa-48 Beta-Lactamase
Length = 265
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 63 DHNLVRAMKWELPLMWDYDLEKYARWWANQRKADCKLQHSFPEDNFKLGENI--FWGSG 119
DHNL+ AMK+ + ++ +++AR R + K+ H+F N + N+ FW G
Sbjct: 108 DHNLITAMKYSVVPVY----QEFARQIGEARMS--KMLHAFDYGNEDISGNVDSFWLDG 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,606,687
Number of Sequences: 62578
Number of extensions: 279006
Number of successful extensions: 525
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 490
Number of HSP's gapped (non-prelim): 21
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)