Query 029298
Match_columns 195
No_of_seqs 194 out of 1284
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 10:39:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029298.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029298hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05381 SCP_PR-1_like SCP_PR-1 100.0 4E-41 8.6E-46 243.3 15.8 134 58-195 2-136 (136)
2 cd05384 SCP_PRY1_like SCP_PRY1 100.0 2.1E-37 4.6E-42 221.9 14.2 127 56-191 2-129 (129)
3 cd05382 SCP_GAPR-1_like SCP_GA 100.0 1.8E-37 4E-42 222.9 11.7 129 56-189 2-132 (132)
4 cd05385 SCP_GLIPR-1_like SCP_G 100.0 6E-35 1.3E-39 213.0 13.4 125 56-186 2-144 (144)
5 smart00198 SCP SCP / Tpx-1 / A 100.0 9.6E-35 2.1E-39 211.7 12.9 124 56-186 2-144 (144)
6 cd00168 SCP SCP: SCP-like extr 100.0 2.6E-34 5.6E-39 203.9 13.4 120 58-184 2-122 (122)
7 cd05383 SCP_CRISP SCP_CRISP: S 100.0 2.9E-34 6.4E-39 207.9 13.5 126 56-186 2-138 (138)
8 cd05559 SCP_HrTT-1 SCP_HrTT-1: 100.0 4.4E-34 9.6E-39 206.5 12.5 124 57-184 1-136 (136)
9 cd05380 SCP_euk SCP_euk: SCP-l 100.0 1.3E-32 2.8E-37 200.0 10.6 123 58-184 2-144 (144)
10 KOG3017 Defense-related protei 100.0 5E-33 1.1E-37 216.9 8.8 138 54-195 39-198 (225)
11 TIGR02909 spore_YkwD uncharact 99.9 1.9E-23 4.1E-28 149.2 12.3 111 55-184 3-126 (127)
12 PF00188 CAP: Cysteine-rich se 99.9 9.7E-23 2.1E-27 142.0 9.1 116 61-183 1-124 (124)
13 cd05379 SCP_bacterial SCP_bact 99.8 2.1E-18 4.5E-23 121.5 10.5 107 58-183 2-121 (122)
14 COG2340 Uncharacterized protei 99.6 6.8E-15 1.5E-19 113.2 10.0 106 51-174 75-193 (207)
15 PF11054 Surface_antigen: Spor 86.9 8.4 0.00018 30.3 8.9 133 57-195 35-218 (254)
16 PF12273 RCR: Chitin synthesis 59.4 13 0.00027 26.3 3.2 25 59-83 17-41 (130)
17 PF10913 DUF2706: Protein of u 41.8 37 0.00081 19.9 2.6 11 8-18 8-18 (60)
18 PRK03814 oxaloacetate decarbox 40.5 78 0.0017 20.7 4.4 18 54-71 66-83 (85)
19 KOG4439 RNA polymerase II tran 36.9 44 0.00094 30.9 3.5 47 49-95 777-845 (901)
20 cd02164 PPAT_CoAS phosphopante 30.5 53 0.0011 23.6 2.6 23 55-77 97-119 (143)
21 PF04277 OAD_gamma: Oxaloaceta 27.6 1E+02 0.0022 19.3 3.4 16 55-70 64-79 (79)
22 PF07167 PhaC_N: Poly-beta-hyd 26.9 79 0.0017 23.7 3.0 40 80-119 82-121 (172)
23 PF03295 Pox_TAA1: Poxvirus tr 25.5 68 0.0015 19.5 2.0 18 57-74 26-43 (63)
24 PRK10781 rcsF outer membrane l 24.6 1.3E+02 0.0029 21.4 3.7 10 84-93 90-99 (133)
25 COG3412 Uncharacterized protei 23.6 97 0.0021 21.9 2.8 30 77-106 9-38 (129)
26 PF10880 DUF2673: Protein of u 22.8 48 0.001 19.8 1.0 18 8-25 4-21 (65)
27 PF05984 Cytomega_UL20A: Cytom 22.1 82 0.0018 20.5 2.0 18 1-18 1-18 (100)
28 KOG0286 G-protein beta subunit 21.3 61 0.0013 26.6 1.6 34 156-190 79-112 (343)
29 COG1019 Predicted nucleotidylt 21.3 64 0.0014 23.7 1.6 19 59-77 104-122 (158)
30 PF13983 YsaB: YsaB-like lipop 20.5 66 0.0014 20.1 1.3 12 178-189 60-71 (77)
31 PLN02388 phosphopantetheine ad 20.3 94 0.002 23.3 2.4 22 56-77 118-139 (177)
No 1
>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=4e-41 Score=243.32 Aligned_cols=134 Identities=57% Similarity=1.162 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHhhhcCCcCCCCCCCCCccceEEEEeeCCCCChhhhHHHHHhhhcc
Q 029298 58 LQFLFDHNLVRAMKWELPLMWDYDLEKYARWWANQRKADCKLQHSFPEDNFKLGENIFWGSGSTWTPRDAVSVWAGEEKY 137 (195)
Q Consensus 58 ~~iL~~hN~~R~~~~~~~L~wd~~La~~A~~~a~~~~~~c~~~h~~~~~~~~~GeN~~~~~~~~~~~~~~v~~W~~e~~~ 137 (195)
++||+.||++|+.++|++|+||++|++.||.||++|+..|...|+.. .+|||++++.....++.++|+.|++|...
T Consensus 2 ~~il~~hN~~R~~~~~~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~----~~GeNi~~~~~~~~~~~~~v~~W~~e~~~ 77 (136)
T cd05381 2 QDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRRGDCALVHSNG----PYGENLFWGSGGNWSAADAVASWVSEKKY 77 (136)
T ss_pred hHHHHHHHHHHHhcCCCcceECHHHHHHHHHHHHHhcCCCCcccCCC----CCCceEEEecCCCCCHHHHHHHHHhcccc
Confidence 58999999999999999999999999999999998888899888754 37999998766555789999999999999
Q ss_pred CCCCCCCCCCCCccchHHHHHHHhcCeEeEEEEEeCC-CCEEEEEEccCCCCCCCCCCC
Q 029298 138 YTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCDS-GDVFMTCNYDPVGNYVGERPY 195 (195)
Q Consensus 138 ~~~~~~~~~~~~~~~~ftqmiw~~t~~vGCa~~~c~~-~~~~~vC~Y~p~gn~~g~~~Y 195 (195)
|++..+.+..+..++|||||||+++++||||++.|.+ +++++||+|+|+||+.|++||
T Consensus 78 y~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~vvC~Y~p~gn~~g~~~Y 136 (136)
T cd05381 78 YDYDSNTCAAGKMCGHYTQVVWRNTTRVGCARVTCDNGGGVFIICNYDPPGNYIGQRPY 136 (136)
T ss_pred CCCCCCCcCCCccchHHHHHHHHhcCEeceEEEEeCCCCcEEEEEEeeCCCCCCCCCCC
Confidence 9998887777788999999999999999999999976 567999999999999999998
No 2
>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.
Probab=100.00 E-value=2.1e-37 Score=221.91 Aligned_cols=127 Identities=36% Similarity=0.625 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHhhhcCCcCCCCCCCCCccceEEEEeeCCCCChhhhHHHHHhhh
Q 029298 56 EALQFLFDHNLVRAMKWELPLMWDYDLEKYARWWANQRKADCKLQHSFPEDNFKLGENIFWGSGSTWTPRDAVSVWAGEE 135 (195)
Q Consensus 56 ~~~~iL~~hN~~R~~~~~~~L~wd~~La~~A~~~a~~~~~~c~~~h~~~~~~~~~GeN~~~~~~~~~~~~~~v~~W~~e~ 135 (195)
+++.||+.||.+|+.+|+++|+||++|+..||.||++++..|.+.|+.. .+|||++.+.. +++.+|+.|++|.
T Consensus 2 ~~~~iL~~hN~~R~~~g~~~L~w~~~La~~A~~~a~~c~~~~~~~~~~~----~~geNi~~~~~---~~~~~v~~W~~e~ 74 (129)
T cd05384 2 FASSILDAHNSKRALHGVQPLTWNNTLAEYAQDYANSYDCSGNLAHSGG----PYGENLAAGYP---SGTSAVDAWYDEI 74 (129)
T ss_pred HHHHHHHHHHHHHHHcCCCcCccCHHHHHHHHHHHHHhccCCceecCCC----CCCcEEEEecC---CHHHHHHHHHhhh
Confidence 6889999999999999999999999999999999997766666888764 38999997653 6889999999999
Q ss_pred ccCCCCCCCCCCCCccchHHHHHHHhcCeEeEEEEEeCC-CCEEEEEEccCCCCCCC
Q 029298 136 KYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCDS-GDVFMTCNYDPVGNYVG 191 (195)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~ftqmiw~~t~~vGCa~~~c~~-~~~~~vC~Y~p~gn~~g 191 (195)
..|++..+.+ +..++|||||||+++++||||++.|.+ ..+++||+|+|+||+.|
T Consensus 75 ~~y~~~~~~~--~~~~~h~tqmvw~~t~~vGCa~~~c~~~~~~~~vC~Y~p~Gn~~g 129 (129)
T cd05384 75 EDYDYSNPGF--SEATGHFTQLVWKSTTQVGCAYKDCGGAWGWYIVCEYDPAGNVIG 129 (129)
T ss_pred hhCCCCCCCC--CCcccchhhhhhhccceeeeEEEEeCCCCeEEEEEEEECCCCCCc
Confidence 9999877543 467899999999999999999999976 35789999999999876
No 3
>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.
Probab=100.00 E-value=1.8e-37 Score=222.90 Aligned_cols=129 Identities=35% Similarity=0.560 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHhhhcCCcCCCCCCCCCccceEEEEeeC--CCCChhhhHHHHHh
Q 029298 56 EALQFLFDHNLVRAMKWELPLMWDYDLEKYARWWANQRKADCKLQHSFPEDNFKLGENIFWGSG--STWTPRDAVSVWAG 133 (195)
Q Consensus 56 ~~~~iL~~hN~~R~~~~~~~L~wd~~La~~A~~~a~~~~~~c~~~h~~~~~~~~~GeN~~~~~~--~~~~~~~~v~~W~~ 133 (195)
+++.||+.||++|+++||++|+||++|+..||.||++++..+.+.|+.+. .+|||++++.. ....++.+|+.|++
T Consensus 2 ~~~~iL~~hN~~R~~~g~~~L~wd~~La~~A~~~a~~c~~~~~~~h~~~~---~~GeN~~~~~~~~~~~~~~~~v~~W~~ 78 (132)
T cd05382 2 FQKECLDAHNEYRALHGAPPLKLDKELAKEAQKWAEKLASSGKLQHSSPS---GYGENLAYASGSGPDLTGEEAVDSWYN 78 (132)
T ss_pred HHHHHHHHHHHHHHHcCCCcCeeCHHHHHHHHHHHHHhhhcCceeCCCCC---CCCceeEEecCCCCCCCHHHHHHHHHh
Confidence 68899999999999999999999999999999999977777778887754 58999998764 34578999999999
Q ss_pred hhccCCCCCCCCCCCCccchHHHHHHHhcCeEeEEEEEeCCCCEEEEEEccCCCCC
Q 029298 134 EEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCDSGDVFMTCNYDPVGNY 189 (195)
Q Consensus 134 e~~~~~~~~~~~~~~~~~~~ftqmiw~~t~~vGCa~~~c~~~~~~~vC~Y~p~gn~ 189 (195)
|...|++..+. .+..++||+||||+++++||||++.|.++.+++||+|+|+||+
T Consensus 79 e~~~y~~~~~~--~~~~~gh~tqmvw~~t~~vGCa~~~~~~~~~~~vC~Y~p~Gn~ 132 (132)
T cd05382 79 EIKKYDFNKPG--FSSKTGHFTQVVWKSSTELGVGVAKSKKGCVYVVARYRPAGNV 132 (132)
T ss_pred ccccCCCCCCC--CCCCCCCeEEeEecCCCceeeEEEEcCCCCEEEEEEEeCCCCC
Confidence 99999987543 3467899999999999999999999987788999999999996
No 4
>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=6e-35 Score=212.99 Aligned_cols=125 Identities=37% Similarity=0.743 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHhhC-----CCCCCCchHHHHHHHHHHHHHhhhcCCcCCCCCCCC--------CccceEEEEeeCCCC
Q 029298 56 EALQFLFDHNLVRAMK-----WELPLMWDYDLEKYARWWANQRKADCKLQHSFPEDN--------FKLGENIFWGSGSTW 122 (195)
Q Consensus 56 ~~~~iL~~hN~~R~~~-----~~~~L~wd~~La~~A~~~a~~~~~~c~~~h~~~~~~--------~~~GeN~~~~~~~~~ 122 (195)
++++||+.||++|+.+ +|++|+||++|++.||.||+ +|.+.|+.+... ..+||||+.......
T Consensus 2 f~~~~L~~HN~~R~~~~p~a~~m~~l~Wd~~La~~Aq~~a~----~C~~~~~~~~~~~~~~~~~~~~~GeNi~~~~~~~~ 77 (144)
T cd05385 2 FIDECVRIHNELRSKVSPPAANMRYMTWDAALAKTARAWAK----KCKFKHNIYLGKRYKCHPKFTSVGENIWLGSIYIF 77 (144)
T ss_pred HHHHHHHHHHHHHhhCCCCcccCcccccCHHHHHHHHHHHh----cCCCCCCchhhcccccccccCcccceeeecccCCC
Confidence 6789999999999998 68899999999999999999 999998765321 248999987765556
Q ss_pred ChhhhHHHHHhhhccCCCCCCCCCCCCccchHHHHHHHhcCeEeEEEEEeCCCC-----EEEEEEccCC
Q 029298 123 TPRDAVSVWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCDSGD-----VFMTCNYDPV 186 (195)
Q Consensus 123 ~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~ftqmiw~~t~~vGCa~~~c~~~~-----~~~vC~Y~p~ 186 (195)
.+.++|+.||+|..+|+|..+.+. ..++|||||||+++++||||++.|.+++ .++||+|+|+
T Consensus 78 ~~~~av~~W~~e~~~y~~~~~~~~--~~~ghftqmvw~~t~~vGCa~~~c~~~~~~~~~~~vVC~Y~p~ 144 (144)
T cd05385 78 SPKNAVTSWYNEGKFYDFDTNSCS--RVCGHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFVCNYAPA 144 (144)
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCC--CcccCHHHHHHhhccccceEEEECCCCCCccccEEEEEeCCCC
Confidence 788999999999999998876654 5789999999999999999999998643 5899999994
No 5
>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.
Probab=100.00 E-value=9.6e-35 Score=211.69 Aligned_cols=124 Identities=39% Similarity=0.763 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHhhCC-----------CCCCCchHHHHHHHHHHHHHhhhcCCcCCCCCCCCCccceEEEEeeC----C
Q 029298 56 EALQFLFDHNLVRAMKW-----------ELPLMWDYDLEKYARWWANQRKADCKLQHSFPEDNFKLGENIFWGSG----S 120 (195)
Q Consensus 56 ~~~~iL~~hN~~R~~~~-----------~~~L~wd~~La~~A~~~a~~~~~~c~~~h~~~~~~~~~GeN~~~~~~----~ 120 (195)
.++.||+.||.+|+.++ |++|+||++|+..|+.||+ +|...|+.+. .+|||+++... .
T Consensus 2 ~~~~iL~~HN~~R~~~a~G~~~~p~a~~m~~l~Wd~~La~~A~~~a~----~C~~~~~~~~---~~GeNi~~~~~~~~~~ 74 (144)
T smart00198 2 QQQEILDAHNKLRSQVAKGLLANPAASNMLKLTWDCELASSAQNWAN----QCPFGHSTPR---GYGENLAWWSSSTDLP 74 (144)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHHHH----hCCCcCCCcC---CcCcceEEecccCccc
Confidence 57899999999999988 9999999999999999999 9999988754 58999997654 2
Q ss_pred CCChhhhHHHHHhhhccCCCCCCCCCC-CCccchHHHHHHHhcCeEeEEEEEeCCCC---EEEEEEccCC
Q 029298 121 TWTPRDAVSVWAGEEKYYTYATNTCQE-GQQCGHYTQIVWKNTRRIGCARVVCDSGD---VFMTCNYDPV 186 (195)
Q Consensus 121 ~~~~~~~v~~W~~e~~~~~~~~~~~~~-~~~~~~ftqmiw~~t~~vGCa~~~c~~~~---~~~vC~Y~p~ 186 (195)
...+..+|+.||+|...|++..+.+.. +..++|||||||+++++||||++.|.++. +++||+|+|+
T Consensus 75 ~~~~~~av~~W~~e~~~y~~~~~~~~~~~~~~~hftqmvw~~s~~vGCa~~~c~~~~~~~~~~vC~Y~P~ 144 (144)
T smart00198 75 ITYASAAVQLWYDEFQDYGYSSNTCKDTNGKIGHYTQVVWAKTYKVGCGVSNCPDGTKKKTVVVCNYDPP 144 (144)
T ss_pred chhHHHHHHHHHHHHHHcCCCCCccccCccchhHHHHHHHHhcCCcceEEEECCCCCcceEEEEEecCCC
Confidence 345788999999999999999887665 67899999999999999999999998775 5999999995
No 6
>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as
Probab=100.00 E-value=2.6e-34 Score=203.89 Aligned_cols=120 Identities=38% Similarity=0.626 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhhC-CCCCCCchHHHHHHHHHHHHHhhhcCCcCCCCCCCCCccceEEEEeeCCCCChhhhHHHHHhhhc
Q 029298 58 LQFLFDHNLVRAMK-WELPLMWDYDLEKYARWWANQRKADCKLQHSFPEDNFKLGENIFWGSGSTWTPRDAVSVWAGEEK 136 (195)
Q Consensus 58 ~~iL~~hN~~R~~~-~~~~L~wd~~La~~A~~~a~~~~~~c~~~h~~~~~~~~~GeN~~~~~~~~~~~~~~v~~W~~e~~ 136 (195)
++||+.||.+|+.+ +|+||+||++|+..|+.||+ +|.+.|+.+..+..+|||++.+..+ .+++.+|+.|++|..
T Consensus 2 ~~il~~hN~~R~~~a~~~~L~wd~~La~~A~~~a~----~c~~~h~~~~~~~~~geNi~~~~~~-~~~~~~v~~W~~e~~ 76 (122)
T cd00168 2 QEVVRLHNSYRAKVNGMLPMSWDAELAKTAQNYAN----RCIFKHSGEDGRGFVGENLAAGSYD-MTGPAAVQAWYNEIK 76 (122)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHHh----hccccCCCcccCCCCCceeEEecCC-CCHHHHHHHHHHHHH
Confidence 48999999999999 99999999999999999999 9999999887767799999987654 578999999999999
Q ss_pred cCCCCCCCCCCCCccchHHHHHHHhcCeEeEEEEEeCCCCEEEEEEcc
Q 029298 137 YYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCDSGDVFMTCNYD 184 (195)
Q Consensus 137 ~~~~~~~~~~~~~~~~~ftqmiw~~t~~vGCa~~~c~~~~~~~vC~Y~ 184 (195)
.|+|..+ ..+..++||+||||+++++||||++.|.+++.++||+|+
T Consensus 77 ~y~~~~~--~~~~~~~h~~qmvw~~s~~vGca~~~~~~~~~~~vC~Y~ 122 (122)
T cd00168 77 NYNFGQP--GFSSGTGHYTQVVWKNTTKIGCGVAFCGSNSYYVVCNYG 122 (122)
T ss_pred hCCCCCC--CCCCCccchhhhhcccCCeeeeEEEEcCCCCEEEEEeCc
Confidence 9998744 334668999999999999999999999877889999995
No 7
>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t
Probab=100.00 E-value=2.9e-34 Score=207.90 Aligned_cols=126 Identities=33% Similarity=0.612 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHhhCC-----CCCCCchHHHHHHHHHHHHHhhhcCCcCCCCCCC----CCccceEEEEeeCCCCChhh
Q 029298 56 EALQFLFDHNLVRAMKW-----ELPLMWDYDLEKYARWWANQRKADCKLQHSFPED----NFKLGENIFWGSGSTWTPRD 126 (195)
Q Consensus 56 ~~~~iL~~hN~~R~~~~-----~~~L~wd~~La~~A~~~a~~~~~~c~~~h~~~~~----~~~~GeN~~~~~~~~~~~~~ 126 (195)
.++.||+.||.+|+.+. |++|+||++||..||.||+ +|.+.|+.+.. ...+|||++.... ..+.++
T Consensus 2 ~~~~il~~HN~~R~~~~p~a~~M~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~~~~~GeNl~~~~~-~~~~~~ 76 (138)
T cd05383 2 VQKEIVDLHNELRRSVNPTASNMLKMEWNEEAAQNAKKWAN----TCNLTHSPPNGRTIGGITCGENIFMSSY-PRSWSD 76 (138)
T ss_pred HHHHHHHHHHHHhccCCCCcccCcccEeCHHHHHHHHHHHh----cCCCcCCchhhcccCCCCcceeeeccCC-CCCHHH
Confidence 57899999999999864 5579999999999999999 99998986532 1258999997643 346789
Q ss_pred hHHHHHhhhccCCCCCCCCCCCCccchHHHHHHHhcCeEeEEEEEeCCC--CEEEEEEccCC
Q 029298 127 AVSVWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCDSG--DVFMTCNYDPV 186 (195)
Q Consensus 127 ~v~~W~~e~~~~~~~~~~~~~~~~~~~ftqmiw~~t~~vGCa~~~c~~~--~~~~vC~Y~p~ 186 (195)
+|+.||+|..+|++..+.+..+..++|||||||+++++||||++.|.++ ++++||+|+|+
T Consensus 77 av~~W~~e~~~y~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~vC~Y~P~ 138 (138)
T cd05383 77 VIQAWYDEYKDFKYGVGATPPGAVVGHYTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYCPA 138 (138)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCchhhHHHHHHHhccccceEEEECCCCCcCEEEEEecCCC
Confidence 9999999999999998777677889999999999999999999999874 57999999995
No 8
>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=4.4e-34 Score=206.48 Aligned_cols=124 Identities=35% Similarity=0.730 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHhhCC-----CCCCCchHHHHHHHHHHHHHhhhcCCcCCCCCCCCCccceEEEEeeCCCCChhhhHHHH
Q 029298 57 ALQFLFDHNLVRAMKW-----ELPLMWDYDLEKYARWWANQRKADCKLQHSFPEDNFKLGENIFWGSGSTWTPRDAVSVW 131 (195)
Q Consensus 57 ~~~iL~~hN~~R~~~~-----~~~L~wd~~La~~A~~~a~~~~~~c~~~h~~~~~~~~~GeN~~~~~~~~~~~~~~v~~W 131 (195)
|+.||+.||++|+.++ |.+|+||++|+..||.||+ +|.+.|+...+...+|||++...+....+.++|+.|
T Consensus 1 r~~il~~HN~~R~~~~p~a~~m~~L~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~v~~W 76 (136)
T cd05559 1 RLNLVDLHNQYRSQVSPPAANMLKMTWDEELAALAEAYAR----KCIWDHNPDRGHLRVGENLFISTGPPFDATKAVEDW 76 (136)
T ss_pred CcHHHHHHHHHHhhCCCccccCcccccCHHHHHHHHHHHH----hccccCCCcccCCCceeeeeecCCCCCCHHHHHHHH
Confidence 3589999999999874 5579999999999999999 999999876655568999998766556789999999
Q ss_pred HhhhccCCCCCCCCCCCCccchHHHHHHHhcCeEeEEEEEeCCC-------CEEEEEEcc
Q 029298 132 AGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCDSG-------DVFMTCNYD 184 (195)
Q Consensus 132 ~~e~~~~~~~~~~~~~~~~~~~ftqmiw~~t~~vGCa~~~c~~~-------~~~~vC~Y~ 184 (195)
++|...|++..+.+..+..++|||||||+++++||||++.|.++ .+++||+|+
T Consensus 77 ~~e~~~y~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~~~~~vC~Y~ 136 (136)
T cd05559 77 NNEKLDYNYNTNTCAPNKMCGHYTQVVWANTFKIGCGSYFCETLEVLRWENATLLVCNYG 136 (136)
T ss_pred HHHHHhcCCCCCCCCCCCcccchHHHHHhccCccceEEEECCCCCCCCcccCEEEEecCC
Confidence 99999999998888777889999999999999999999999642 368999995
No 9
>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=1.3e-32 Score=199.95 Aligned_cols=123 Identities=33% Similarity=0.586 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHhhC------------CCCCCCchHHHHHHHHHHHHHhhhcCCcCCCCCCCCCccceEEEEeeCCC----
Q 029298 58 LQFLFDHNLVRAMK------------WELPLMWDYDLEKYARWWANQRKADCKLQHSFPEDNFKLGENIFWGSGST---- 121 (195)
Q Consensus 58 ~~iL~~hN~~R~~~------------~~~~L~wd~~La~~A~~~a~~~~~~c~~~h~~~~~~~~~GeN~~~~~~~~---- 121 (195)
+.||+.||.+|+.+ +|++|.||++|++.|+.||+ +|.+.|+.+..+..+|||++......
T Consensus 2 ~~il~~HN~~R~~~a~g~~~~~p~a~~m~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~GeNl~~~~~~~~~~~ 77 (144)
T cd05380 2 QAILDAHNELRSKVAKGTYSLLPPASNMPKLKWDDELAALAQNWAK----TCVFEHSPCRNTGGVGQNLAAGSSTGSTVE 77 (144)
T ss_pred cHHHHHHHHHHHHhhcCCCCCCCchhcCCcceeCHHHHHHHHHHHh----cCCCcCCcccCCCCCCcEEEEeccCCCCHH
Confidence 58999999999998 89999999999999999999 99999987765556899999876542
Q ss_pred CChhhhHHHHHhhhccCCCCCC-CCCCCCccchHHHHHHHhcCeEeEEEEEeCC---CCEEEEEEcc
Q 029298 122 WTPRDAVSVWAGEEKYYTYATN-TCQEGQQCGHYTQIVWKNTRRIGCARVVCDS---GDVFMTCNYD 184 (195)
Q Consensus 122 ~~~~~~v~~W~~e~~~~~~~~~-~~~~~~~~~~ftqmiw~~t~~vGCa~~~c~~---~~~~~vC~Y~ 184 (195)
..+.++|+.|++|...|++... .+..+..++||+||||+++++||||++.|.. ...++||+|+
T Consensus 78 ~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~~~~~~~~~~~~vC~Y~ 144 (144)
T cd05380 78 ELAEDAVNAWYNELKDYGFGSNPTNNFNSGIGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS 144 (144)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCcccccccchhHHHHHHHHhcCccceEEEEeecCCceEEEEEecCC
Confidence 3578899999999999998876 4455678999999999999999999999975 4579999995
No 10
>KOG3017 consensus Defense-related protein containing SCP domain [Function unknown]
Probab=100.00 E-value=5e-33 Score=216.92 Aligned_cols=138 Identities=38% Similarity=0.711 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHHHHhhCC-----CCCCCchHHHHHHHHHHHHHhhhcCCcCCCCCCC--CCccceEEEEeeCCC-----
Q 029298 54 IGEALQFLFDHNLVRAMKW-----ELPLMWDYDLEKYARWWANQRKADCKLQHSFPED--NFKLGENIFWGSGST----- 121 (195)
Q Consensus 54 ~~~~~~iL~~hN~~R~~~~-----~~~L~wd~~La~~A~~~a~~~~~~c~~~h~~~~~--~~~~GeN~~~~~~~~----- 121 (195)
..++++|++.||.+|..++ |++|+||++||..||.||+ +|.+.|..... ...+|||++++.+..
T Consensus 39 ~~~~~~~~~~hn~~r~~~~~~as~m~~m~Wd~~La~~Aq~~a~----~c~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~~ 114 (225)
T KOG3017|consen 39 NNLRSEILNGHNVARGAVGPPASNMMKLKWDDELAALAQNWAN----TCPFGHDKCVHTSFGPYGENLAWGWSSNPPLSL 114 (225)
T ss_pred HHHHHHHHhhhHHhcCccCCchHhCccccCCHHHHHHHHHHHh----hCCcccCccccccCCCCcccceeeccCCCCccc
Confidence 3588999999999999998 9999999999999999999 99998886543 235799999877642
Q ss_pred -CChhhhHHHHHhhhccCCCCCCCCCC---CCccchHHHHHHHhcCeEeEEEEEeCCC-----CEEEEEEccCCCCCCC-
Q 029298 122 -WTPRDAVSVWAGEEKYYTYATNTCQE---GQQCGHYTQIVWKNTRRIGCARVVCDSG-----DVFMTCNYDPVGNYVG- 191 (195)
Q Consensus 122 -~~~~~~v~~W~~e~~~~~~~~~~~~~---~~~~~~ftqmiw~~t~~vGCa~~~c~~~-----~~~~vC~Y~p~gn~~g- 191 (195)
.....+++.|+.|...|++..+.+.. +..+||||||||+++++||||++.|.++ .+++||+|+|+||..+
T Consensus 115 ~~~~~~a~~~w~~e~~~~~~~~~~~~~~~~~~~~gHyTQ~vw~~s~~vGCgv~~c~~~~~~~~~~~~vC~Y~p~g~~~~~ 194 (225)
T KOG3017|consen 115 DTSGALAVEAWESEFQEYDWSSNTCSSADFGEGIGHYTQMVWAKSTKVGCGVVRCGNGSNGYNTVAVVCNYDPPGNNING 194 (225)
T ss_pred cccHHHHHHHHHHHHHHccCcccccCcccCCCcceEEEEEEEeCCceeceeeccCCCCCCCcceEEEEEEeecCCCCcCC
Confidence 34677999999999999999999875 7889999999999999999999999987 4699999999955544
Q ss_pred CCCC
Q 029298 192 ERPY 195 (195)
Q Consensus 192 ~~~Y 195 (195)
+.+|
T Consensus 195 ~~~y 198 (225)
T KOG3017|consen 195 EIPY 198 (225)
T ss_pred CCcC
Confidence 6766
No 11
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=99.91 E-value=1.9e-23 Score=149.15 Aligned_cols=111 Identities=27% Similarity=0.299 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHhhhcCCcCCCCCCCC-------------CccceEEEEeeCCC
Q 029298 55 GEALQFLFDHNLVRAMKWELPLMWDYDLEKYARWWANQRKADCKLQHSFPEDN-------------FKLGENIFWGSGST 121 (195)
Q Consensus 55 ~~~~~iL~~hN~~R~~~~~~~L~wd~~La~~A~~~a~~~~~~c~~~h~~~~~~-------------~~~GeN~~~~~~~~ 121 (195)
++++++|+.||++|+++|++||+||+.|++.|+.||++|+..+.++|..+.+. ..+||||+.+..
T Consensus 3 ~~e~~~l~~iN~~R~~~Gl~pL~~~~~L~~~A~~hA~~ma~~~~~~H~~~~~~~~~~r~~~~g~~~~~~gENi~~g~~-- 80 (127)
T TIGR02909 3 AEEKRVVELVNAERAKNGLKPLKADPELSKVARLKSEDMRDKNYFSHTSPTYGSPFDMMKKFGISYRMAGENIAYGNS-- 80 (127)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHHhCCcccccCCCCCCHHHHHHHcCCCcccceeeeeccCC--
Confidence 47889999999999999999999999999999999999999999999876532 135999997654
Q ss_pred CChhhhHHHHHhhhccCCCCCCCCCCCCccchHHHHHHHhcCeEeEEEEEeCCCCEEEEEEcc
Q 029298 122 WTPRDAVSVWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCDSGDVFMTCNYD 184 (195)
Q Consensus 122 ~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~ftqmiw~~t~~vGCa~~~c~~~~~~~vC~Y~ 184 (195)
+++.+|+.|+++ .+|+++|+|.+.++||||++.+.++++|+|-.|.
T Consensus 81 -~~~~~v~~W~~S----------------~gH~~nil~~~~~~~Gvg~~~~~~g~~y~~q~F~ 126 (127)
T TIGR02909 81 -TVEAVHNAWMNS----------------PGHRANILNPNYTEIGVGYVEGGSGGIYWTQMFI 126 (127)
T ss_pred -CHHHHHHHHHcC----------------HhHHHHHcCCCcCeEeEEEEeCCCCCeEEEEEec
Confidence 688999999854 3899999999999999999999888888888774
No 12
>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....
Probab=99.88 E-value=9.7e-23 Score=141.96 Aligned_cols=116 Identities=35% Similarity=0.506 Sum_probs=84.1
Q ss_pred HHHHHHHH-hhCCCCCCCchHHHHHHHHHHHHHhhhcCCcCCCCCCCCCccceEEEEeeCCCCChhh---hHHHHHhhhc
Q 029298 61 LFDHNLVR-AMKWELPLMWDYDLEKYARWWANQRKADCKLQHSFPEDNFKLGENIFWGSGSTWTPRD---AVSVWAGEEK 136 (195)
Q Consensus 61 L~~hN~~R-~~~~~~~L~wd~~La~~A~~~a~~~~~~c~~~h~~~~~~~~~GeN~~~~~~~~~~~~~---~v~~W~~e~~ 136 (195)
|+.||++| +..++++|+||++|++.|+.+|+ .|...+... ...|+++............ .++.|+.+..
T Consensus 1 L~~~N~~R~~~~~~~~L~~d~~L~~~A~~~a~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (124)
T PF00188_consen 1 LDLHNEYRSAANGLPPLKWDPELAKAAQAHAK----YCANSNSLS---HDSGENGSQSSRFGSYSDAQVTAVENWYSESK 73 (124)
T ss_dssp HHHHHHHHHBSSTBB--EE-HHHHHHHHHHHT----TTCSSEETT---EESEEEEEEESSTTSHHHHHHHHHHHHHGGGG
T ss_pred CHHHHHHHHHhCCCCCCeeCHHHHHHHHHhhH----Hhhhhcccc---cccCCCCccccccccccchhhHHHHHHHhccc
Confidence 78999999 88888899999999999999999 665522111 1358888866543221111 1899999999
Q ss_pred cCCCCC--CCCCCCCccchHHHHHHHhcCeEeEEEEEeCCCC--EEEEEEc
Q 029298 137 YYTYAT--NTCQEGQQCGHYTQIVWKNTRRIGCARVVCDSGD--VFMTCNY 183 (195)
Q Consensus 137 ~~~~~~--~~~~~~~~~~~ftqmiw~~t~~vGCa~~~c~~~~--~~~vC~Y 183 (195)
.+.... ........++||+||+|.++++||||++.|.+++ +++||.|
T Consensus 74 ~~~~~~~~~~~~~~~~~~h~~~ll~~~~~~iGca~~~~~~~~~~~~~vc~y 124 (124)
T PF00188_consen 74 NYNFQNQSIFNSWMNSPGHFTNLLWPNTTRIGCAVANCPNGKNNYYWVCNY 124 (124)
T ss_dssp GEETTCSTEESSTTSTCHHHHHHT-TT--EEEEEEEEETTSSSEEEEEEEE
T ss_pred ccccccchhhhccCCchhhhhhhhcCCCCEEEEEEEEeCCCCeeEEEEEEC
Confidence 888762 2223456789999999999999999999999877 8999998
No 13
>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.
Probab=99.78 E-value=2.1e-18 Score=121.49 Aligned_cols=107 Identities=26% Similarity=0.326 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHhhhcCCcCCCCCCCCC-------------ccceEEEEeeCCCCCh
Q 029298 58 LQFLFDHNLVRAMKWELPLMWDYDLEKYARWWANQRKADCKLQHSFPEDNF-------------KLGENIFWGSGSTWTP 124 (195)
Q Consensus 58 ~~iL~~hN~~R~~~~~~~L~wd~~La~~A~~~a~~~~~~c~~~h~~~~~~~-------------~~GeN~~~~~~~~~~~ 124 (195)
+.+++.+|.+|..+|++||+||.+|+..|+.||++|+....+.|....+.. .+|||++.+.. ++
T Consensus 2 ~~~~~~iN~~R~~~gl~pl~~~~~l~~~A~~~a~~~~~~~~~~h~~~~~~~~~~~~~~~g~~~~~~~eni~~~~~---~~ 78 (122)
T cd05379 2 QEALELINAYRAQNGLPPLTWDPALAAAAQAHARDMAANGYFSHTGPDGSSPFDRARAAGYPYSSAGENIAYGYS---TA 78 (122)
T ss_pred hHHHHHHHHHHHHcCCCCCccChHHHHHHHHHHHHHHhcCccCCcCCCCCCHHHHHHHcCCCcCccchhhcccCC---CH
Confidence 478999999999999999999999999999999999988889998766531 13999987654 68
Q ss_pred hhhHHHHHhhhccCCCCCCCCCCCCccchHHHHHHHhcCeEeEEEEEeCCCCEEEEEEc
Q 029298 125 RDAVSVWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCDSGDVFMTCNY 183 (195)
Q Consensus 125 ~~~v~~W~~e~~~~~~~~~~~~~~~~~~~ftqmiw~~t~~vGCa~~~c~~~~~~~vC~Y 183 (195)
.++++.|+++ .+|+.+|+|...+++|||+..+.++.+|+|..|
T Consensus 79 ~~~~~~w~~~----------------~~H~~~ll~~~~~~~Gvg~~~~~~~~~y~~~~f 121 (122)
T cd05379 79 EAAVDGWMNS----------------PGHRANILNPDYTEVGVGVAYGGDGGYYWVQVF 121 (122)
T ss_pred HHHHHHHhCC----------------HhHHHHHcCCCcceeeEEEEeCCCCCeEEEEec
Confidence 9999999855 379999999999999999999987888888876
No 14
>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown]
Probab=99.60 E-value=6.8e-15 Score=113.24 Aligned_cols=106 Identities=26% Similarity=0.306 Sum_probs=90.4
Q ss_pred cCChHHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHhhhcCCcCCCCCCCC------------C-ccceEEEEe
Q 029298 51 WGCIGEALQFLFDHNLVRAMKWELPLMWDYDLEKYARWWANQRKADCKLQHSFPEDN------------F-KLGENIFWG 117 (195)
Q Consensus 51 ~~~~~~~~~iL~~hN~~R~~~~~~~L~wd~~La~~A~~~a~~~~~~c~~~h~~~~~~------------~-~~GeN~~~~ 117 (195)
....++...+++.+|++|..+++++|.||.+|+..|+.|+++|+....++|..+.+. . .+||||+.+
T Consensus 75 ~~~~~~~~~~~~~~N~~R~~~~l~~L~~n~~L~~~A~~~a~~m~~~g~~sH~~~~g~~~~~r~~~~g~~~~~agENIa~g 154 (207)
T COG2340 75 STLAQFEKAVVAETNQERAKHGLPPLAWNATLAKAARNHARDMAKNGYFSHTSPTGETPADRLKKYGISGATAGENIAYG 154 (207)
T ss_pred cccchhHHHHHHHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHcCCccccCCCCCCHHHHHHhCCcccccccceeecC
Confidence 335578889999999999999999999999999999999999999999999987432 1 379999988
Q ss_pred eCCCCChhhhHHHHHhhhccCCCCCCCCCCCCccchHHHHHHHhcCeEeEEEEEeCC
Q 029298 118 SGSTWTPRDAVSVWAGEEKYYTYATNTCQEGQQCGHYTQIVWKNTRRIGCARVVCDS 174 (195)
Q Consensus 118 ~~~~~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~ftqmiw~~t~~vGCa~~~c~~ 174 (195)
+.+ .++.+|+.|++.. ||-.+|+..+.+.+|.|+..-.+
T Consensus 155 ~~~--~~~~~v~~Wl~S~----------------gH~~nll~~~~~~~Gv~~~~~~~ 193 (207)
T COG2340 155 SND--PPEAAVDGWLNSP----------------GHRKNLLNPAYTEIGVGVAYDAS 193 (207)
T ss_pred CCC--chHHHHHHhcCCh----------------hhhhhccCcchhheeEEEEecCC
Confidence 653 2279999998544 79999999999999999997543
No 15
>PF11054 Surface_antigen: Sporozoite TA4 surface antigen; InterPro: IPR021288 This family of proteins is a Eukaryotic family of surface antigens. One of the better characterised members of the family is the sporulated TA4 antigen. The TA4 gene encodes a single polypeptide of 25 kDa which contains a 17 and a 8kDa polypeptide [].
Probab=86.92 E-value=8.4 Score=30.31 Aligned_cols=133 Identities=17% Similarity=0.250 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCC-----------c-hHHHHHHHHHHHHHhhhcCCcCCCCC-C--------CCCccceEEE
Q 029298 57 ALQFLFDHNLVRAMKWELPLM-----------W-DYDLEKYARWWANQRKADCKLQHSFP-E--------DNFKLGENIF 115 (195)
Q Consensus 57 ~~~iL~~hN~~R~~~~~~~L~-----------w-d~~La~~A~~~a~~~~~~c~~~h~~~-~--------~~~~~GeN~~ 115 (195)
.-++|+.+|..|...|++... . +++| .....|.+ -|..-.... . ..+.-| +.+
T Consensus 35 ~~~CL~E~NaaReAAGL~~F~~A~~~~~~Lp~~~~~e~-~~~t~W~~----iC~~l~pt~~~~~~~~~~~~pf~~G-TyA 108 (254)
T PF11054_consen 35 SVECLSEMNAAREAAGLANFTEATSDDQKLPEPGSEEL-TDDTLWKK----ICEHLIPTQAEPAAEASKLNPFKDG-TYA 108 (254)
T ss_pred chhHHHHHHHHHHhcCchhhHhhcCCcccCCCCCchhc-cchhhHHH----HHHHhcCCCCcchhhccccCcCCCC-ceE
Confidence 349999999999998864211 1 2333 33345555 454322110 0 011112 222
Q ss_pred E--eeCCCCChhhhHHHHHhhhccCCCCCCCCC------CCCccchHHHHHHHhcCe-EeEEEEEeCCC-----------
Q 029298 116 W--GSGSTWTPRDAVSVWAGEEKYYTYATNTCQ------EGQQCGHYTQIVWKNTRR-IGCARVVCDSG----------- 175 (195)
Q Consensus 116 ~--~~~~~~~~~~~v~~W~~e~~~~~~~~~~~~------~~~~~~~ftqmiw~~t~~-vGCa~~~c~~~----------- 175 (195)
. ..+...+..+.|+.|-...++++--.++.. ++.+--.|.-|-+.+..- .-|.+..|...
T Consensus 109 f~~lt~~~~dCk~aVdYWKaafknF~glPPs~~~~~~lYndqdnVSFVALYNPs~~atAdC~vvTCt~tt~~~~~~~~~~ 188 (254)
T PF11054_consen 109 FKSLTDEKPDCKEAVDYWKAAFKNFTGLPPSKTAANKLYNDQDNVSFVALYNPSSSATADCRVVTCTQTTSNTAGGSRLQ 188 (254)
T ss_pred eeeccCCCCChHHHHHHHHHHHhhcCCCCCChhhccccccCCcceeEEEEeCCCCCCcceeEEEeCCCCCccCCCccccc
Confidence 2 223456799999999988888875433322 122122444444444443 46888888631
Q ss_pred ---------CEEEEEEccCCCC-CCCCCCC
Q 029298 176 ---------DVFMTCNYDPVGN-YVGERPY 195 (195)
Q Consensus 176 ---------~~~~vC~Y~p~gn-~~g~~~Y 195 (195)
++-++|.-.|..- ..|..|+
T Consensus 189 ~d~~~~~~~gyAliCkT~P~Al~~~~saPF 218 (254)
T PF11054_consen 189 GDSDSESKTGYALICKTMPAALASDGSAPF 218 (254)
T ss_pred CCCcccccceEEEEEecCchhhcCCCCCCC
Confidence 2478999888654 4555553
No 16
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=59.40 E-value=13 Score=26.29 Aligned_cols=25 Identities=16% Similarity=0.103 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhCCCCCCCchHHHH
Q 029298 59 QFLFDHNLVRAMKWELPLMWDYDLE 83 (195)
Q Consensus 59 ~iL~~hN~~R~~~~~~~L~wd~~La 83 (195)
.+.-.||+-|.+.|+.++.-..-|+
T Consensus 17 ~~~~~~~rRR~r~G~~P~~gt~w~~ 41 (130)
T PF12273_consen 17 FLFYCHNRRRRRRGLQPIYGTRWMA 41 (130)
T ss_pred HHHHHHHHHHhhcCCCCcCCceecC
Confidence 4556789999998988877554444
No 17
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=41.83 E-value=37 Score=19.90 Aligned_cols=11 Identities=27% Similarity=0.319 Sum_probs=4.2
Q ss_pred hhhhhhhhhhe
Q 029298 8 LCKIIVLFIIT 18 (195)
Q Consensus 8 l~~~~~~~~~~ 18 (195)
+++++.+..+.
T Consensus 8 ~lv~imlaqll 18 (60)
T PF10913_consen 8 LLVLIMLAQLL 18 (60)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 18
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=40.48 E-value=78 Score=20.69 Aligned_cols=18 Identities=17% Similarity=-0.108 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHhhC
Q 029298 54 IGEALQFLFDHNLVRAMK 71 (195)
Q Consensus 54 ~~~~~~iL~~hN~~R~~~ 71 (195)
.+....|-..+..+|+++
T Consensus 66 ~~~vAAI~AAV~q~R~~~ 83 (85)
T PRK03814 66 PQVVAAISAAVHQHRASK 83 (85)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 345567778888888764
No 19
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=36.87 E-value=44 Score=30.85 Aligned_cols=47 Identities=13% Similarity=0.010 Sum_probs=36.2
Q ss_pred cccCChHHHHHHHHHHHHHHhhC------------C----------CCCCCchHHHHHHHHHHHHHhhh
Q 029298 49 LCWGCIGEALQFLFDHNLVRAMK------------W----------ELPLMWDYDLEKYARWWANQRKA 95 (195)
Q Consensus 49 ~~~~~~~~~~~iL~~hN~~R~~~------------~----------~~~L~wd~~La~~A~~~a~~~~~ 95 (195)
++.....+|+++++.+|.-+... | |-.|.||..|++.|+...-+|..
T Consensus 777 ~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQ 845 (901)
T KOG4439|consen 777 TGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQ 845 (901)
T ss_pred cCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcc
Confidence 34455678999999999988731 1 34689999999999988876653
No 20
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=30.55 E-value=53 Score=23.62 Aligned_cols=23 Identities=22% Similarity=0.008 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCC
Q 029298 55 GEALQFLFDHNLVRAMKWELPLM 77 (195)
Q Consensus 55 ~~~~~iL~~hN~~R~~~~~~~L~ 77 (195)
.+...--..+|+.|.+.|++||.
T Consensus 97 ~ET~~~~~~iN~~R~~~gl~pl~ 119 (143)
T cd02164 97 PETYPGALKINRKREENGLSPLE 119 (143)
T ss_pred HHHhhhHHHHHHHHHHCCCCcee
Confidence 35566778999999999999874
No 21
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=27.57 E-value=1e+02 Score=19.31 Aligned_cols=16 Identities=6% Similarity=-0.193 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhh
Q 029298 55 GEALQFLFDHNLVRAM 70 (195)
Q Consensus 55 ~~~~~iL~~hN~~R~~ 70 (195)
+....|....-.+|++
T Consensus 64 ~~vAaI~AAi~~~~~~ 79 (79)
T PF04277_consen 64 ELVAAIAAAIAAYRRQ 79 (79)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 3445566666666653
No 22
>PF07167 PhaC_N: Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus; InterPro: IPR010941 This entry represents the central domain of the bacterial poly-beta-hydroxybutyrate polymerase (PhaC). Polyhydroxyalkanoic acids (PHAs) are carbon and energy reserve polymers produced in some bacteria when carbon sources are plentiful and another nutrient, such as nitrogen, phosphate, oxygen, or sulphur, becomes limiting. PHAs composed of monomeric units ranging from 3 to 14 carbons exist in nature. When the carbon source is exhausted, PHA is utilised by the bacterium. PhaC links D-(-)-3-hydroxybutyrl-CoA to an existing PHA molecule by the formation of an ester bond [].; GO: 0016746 transferase activity, transferring acyl groups, 0042619 poly-hydroxybutyrate biosynthetic process
Probab=26.87 E-value=79 Score=23.66 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhhcCCcCCCCCCCCCccceEEEEeeC
Q 029298 80 YDLEKYARWWANQRKADCKLQHSFPEDNFKLGENIFWGSG 119 (195)
Q Consensus 80 ~~La~~A~~~a~~~~~~c~~~h~~~~~~~~~GeN~~~~~~ 119 (195)
..|.+-.+.+.++|.+.-..........+.+|||++...+
T Consensus 82 ~sL~~G~~nl~~Dl~~~~~~~~~~d~~aF~vG~nvA~TpG 121 (172)
T PF07167_consen 82 ESLVRGLRNLLEDLERGGGKPSQTDESAFEVGENVATTPG 121 (172)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCchhhhccccccCCCc
Confidence 3456666677776654433322333345678999996544
No 23
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=25.46 E-value=68 Score=19.51 Aligned_cols=18 Identities=11% Similarity=-0.106 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhhCCCC
Q 029298 57 ALQFLFDHNLVRAMKWEL 74 (195)
Q Consensus 57 ~~~iL~~hN~~R~~~~~~ 74 (195)
-+++++.+|.+|..-|.+
T Consensus 26 Pe~Vi~iIN~lR~keGvY 43 (63)
T PF03295_consen 26 PEEVINIINELRNKEGVY 43 (63)
T ss_pred HHHHHHHHHHhhhccCce
Confidence 458999999999987753
No 24
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=24.63 E-value=1.3e+02 Score=21.42 Aligned_cols=10 Identities=20% Similarity=-0.001 Sum_probs=4.2
Q ss_pred HHHHHHHHHh
Q 029298 84 KYARWWANQR 93 (195)
Q Consensus 84 ~~A~~~a~~~ 93 (195)
..++..|.+|
T Consensus 90 ~~~r~kAa~~ 99 (133)
T PRK10781 90 KRMQINASKM 99 (133)
T ss_pred HHHHHHHHHc
Confidence 3444444444
No 25
>COG3412 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.61 E-value=97 Score=21.93 Aligned_cols=30 Identities=10% Similarity=-0.022 Sum_probs=24.1
Q ss_pred CchHHHHHHHHHHHHHhhhcCCcCCCCCCC
Q 029298 77 MWDYDLEKYARWWANQRKADCKLQHSFPED 106 (195)
Q Consensus 77 ~wd~~La~~A~~~a~~~~~~c~~~h~~~~~ 106 (195)
.=+.+|++-....+++|+.+|...+.+..+
T Consensus 9 SHS~~lAeGv~~li~em~~dv~i~~~gGtd 38 (129)
T COG3412 9 SHSKELAEGVAELIREMAGDVPITYAGGTD 38 (129)
T ss_pred eCCHHHHHHHHHHHHHHhCCCceEEecCCC
Confidence 346789999999999999999887765443
No 26
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=22.81 E-value=48 Score=19.77 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=8.2
Q ss_pred hhhhhhhhhheecccccc
Q 029298 8 LCKIIVLFIITTNTLLVT 25 (195)
Q Consensus 8 l~~~~~~~~~~~~~~~~~ 25 (195)
|+.+++++++++.+++.+
T Consensus 4 llkillilafa~pvfass 21 (65)
T PF10880_consen 4 LLKILLILAFASPVFASS 21 (65)
T ss_pred HHHHHHHHHHhhhHhhhc
Confidence 344444444544444444
No 27
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=22.08 E-value=82 Score=20.52 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=10.5
Q ss_pred Ccccchhhhhhhhhhhhe
Q 029298 1 MKPQLQSLCKIIVLFIIT 18 (195)
Q Consensus 1 m~~~~~~l~~~~~~~~~~ 18 (195)
|.+.+..|.++.+.++++
T Consensus 1 MaRRlwiLslLAVtLtVA 18 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVA 18 (100)
T ss_pred CchhhHHHHHHHHHHHHH
Confidence 676666566665555443
No 28
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=21.35 E-value=61 Score=26.56 Aligned_cols=34 Identities=32% Similarity=0.627 Sum_probs=21.5
Q ss_pred HHHHHhcCeEeEEEEEeCCCCEEEEEEccCCCCCC
Q 029298 156 QIVWKNTRRIGCARVVCDSGDVFMTCNYDPVGNYV 190 (195)
Q Consensus 156 qmiw~~t~~vGCa~~~c~~~~~~~vC~Y~p~gn~~ 190 (195)
-|||+..|.-=-....= .-.+++.|.|+|.||..
T Consensus 79 lIvWDs~TtnK~haipl-~s~WVMtCA~sPSg~~V 112 (343)
T KOG0286|consen 79 LIVWDSFTTNKVHAIPL-PSSWVMTCAYSPSGNFV 112 (343)
T ss_pred EEEEEcccccceeEEec-CceeEEEEEECCCCCeE
Confidence 47777766533332221 12579999999999863
No 29
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=21.29 E-value=64 Score=23.66 Aligned_cols=19 Identities=21% Similarity=0.078 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhhCCCCCCC
Q 029298 59 QFLFDHNLVRAMKWELPLM 77 (195)
Q Consensus 59 ~iL~~hN~~R~~~~~~~L~ 77 (195)
.-=..+|+.|.+.|++||.
T Consensus 104 ~~Al~IN~~R~~~Gl~pL~ 122 (158)
T COG1019 104 PGALKINEIREKRGLPPLE 122 (158)
T ss_pred hhHHHHHHHHHHCCCCCeE
Confidence 4446799999999999975
No 30
>PF13983 YsaB: YsaB-like lipoprotein
Probab=20.52 E-value=66 Score=20.14 Aligned_cols=12 Identities=25% Similarity=0.789 Sum_probs=9.6
Q ss_pred EEEEEccCCCCC
Q 029298 178 FMTCNYDPVGNY 189 (195)
Q Consensus 178 ~~vC~Y~p~gn~ 189 (195)
-+||-|+|.|-.
T Consensus 60 ~FvCSFD~dGqF 71 (77)
T PF13983_consen 60 GFVCSFDADGQF 71 (77)
T ss_pred ceEEeECCCCcE
Confidence 689999997643
No 31
>PLN02388 phosphopantetheine adenylyltransferase
Probab=20.29 E-value=94 Score=23.34 Aligned_cols=22 Identities=27% Similarity=0.005 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCC
Q 029298 56 EALQFLFDHNLVRAMKWELPLM 77 (195)
Q Consensus 56 ~~~~iL~~hN~~R~~~~~~~L~ 77 (195)
+...--..+|++|.+.|++||.
T Consensus 118 ET~~g~~~IN~~R~e~Gl~pL~ 139 (177)
T PLN02388 118 ETLPGGLSVNKKRAERGLSQLK 139 (177)
T ss_pred hHhhhHHHHHHHHHHCCCCCeE
Confidence 4456678899999999998864
Done!