BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029299
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UK7|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dj-1d
pdb|3UK7|B Chain B, Crystal Structure Of Arabidopsis Thaliana Dj-1d
pdb|3UK7|C Chain C, Crystal Structure Of Arabidopsis Thaliana Dj-1d
Length = 396
Score = 286 bits (732), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 136/184 (73%), Positives = 155/184 (84%)
Query: 2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK 61
VPFQAL AFG++V CPGKK+GD CPTAVH GHQTY E+RGHNF LNATFDE+D +K
Sbjct: 30 VPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSK 89
Query: 62 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYP 121
YDGLVIPGGRAPEYLA+ SV++LV++FS SGK IASI HGQLILAAAD V GRKCTAY
Sbjct: 90 YDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASIXHGQLILAAADTVNGRKCTAYA 149
Query: 122 PVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRIL 181
V P L+AAGA W+EP T CVVDG++IT ATYEGHPEFI+LF+KALGG ITG++KRIL
Sbjct: 150 TVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYEGHPEFIQLFVKALGGKITGANKRIL 209
Query: 182 FLCG 185
FLCG
Sbjct: 210 FLCG 213
Score = 211 bits (536), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 97/169 (57%), Positives = 122/169 (72%)
Query: 2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK 61
VPFQ+L A G VDA CP KK+GD CPTA+H G QTYSE GH FAL FD++ +
Sbjct: 223 VPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSS 282
Query: 62 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYP 121
YD LVIPGGRAPEYLA+N+ V+++V++F NS K +ASI HGQ ILAAA V+KGRKCTAYP
Sbjct: 283 YDALVIPGGRAPEYLALNEHVLNIVKEFXNSEKPVASIXHGQQILAAAGVLKGRKCTAYP 342
Query: 122 PVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALG 170
VK ++ G +W+EP+ + C DGN++TGA + GHPEF+ LG
Sbjct: 343 AVKLNVVLGGGTWLEPDPIDRCFTDGNLVTGAAWPGHPEFVSQLXALLG 391
>pdb|1G2I|A Chain A, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
pdb|1G2I|B Chain B, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
pdb|1G2I|C Chain C, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
Length = 166
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 17/153 (11%)
Query: 26 VCPTAVHQSTGHQTY---------SETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYL 76
+ P + GH+ Y + G++ ++ TFD+++P ++D LV+PGGRAPE +
Sbjct: 17 IYPYHRLKEEGHEVYIASFERGTITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAPERV 76
Query: 77 AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIE 136
+N+ + + RK + GK +ASICHG IL +A V++GRK T+YP +K I AG W++
Sbjct: 77 RLNEKAVSIARKXFSEGKPVASICHGPQILISAGVLRGRKGTSYPGIKDDXINAGVEWVD 136
Query: 137 PETMAACVVDGNIITGAT----YEGHPEFIRLF 165
E VVDGN ++ Y EF++L
Sbjct: 137 AE----VVVDGNWVSSRVPADLYAWXREFVKLL 165
>pdb|3L18|A Chain A, Ton1285, An Intracellular Protease From Thermococcus
Onnurineus Na1
pdb|3L18|B Chain B, Ton1285, An Intracellular Protease From Thermococcus
Onnurineus Na1
Length = 168
Score = 103 bits (256), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 88/153 (57%), Gaps = 17/153 (11%)
Query: 26 VCPTAVHQSTGHQTY--SETRG-----HNFALNA--TFDEIDPTKYDGLVIPGGRAPEYL 76
+ P + GH+ Y S RG H +++N TF+E+DP ++D LV+PGG+APE +
Sbjct: 19 IYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIV 78
Query: 77 AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIE 136
+N+ + + R+ K +ASICHG IL +A V+KGR+ T+ ++ +I AGA WI+
Sbjct: 79 RLNEKAVMITRRMFEDDKPVASICHGPQILISAKVLKGRRGTSTITIRDDVINAGAEWID 138
Query: 137 PETMAACVVDGNIIT----GATYEGHPEFIRLF 165
E VVDGN ++ G Y EF++L
Sbjct: 139 AE----VVVDGNWVSSRHPGDLYAWMREFVKLL 167
>pdb|1OI4|A Chain A, Crystal Structure Of Yhbo From Escherichia Coli
pdb|1OI4|B Chain B, Crystal Structure Of Yhbo From Escherichia Coli
Length = 193
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 77/126 (61%), Gaps = 11/126 (8%)
Query: 50 LNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109
++ + DE+ P ++D L++PGG +P+YL ++ + R F NSGK + +ICHG +L +A
Sbjct: 75 IDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 134
Query: 110 DVVKGRKCTAYPPVKPVLI---AAGASWIEPETMAACVVDGN-IITGATYEGHPEFIRLF 165
DV++GRK TA VKP++I AGA + + E VVD + ++T T + P F R
Sbjct: 135 DVIRGRKLTA---VKPIIIDVKNAGAEFYDQE----VVVDKDQLVTSRTPDDLPAFNREA 187
Query: 166 LKALGG 171
L+ LG
Sbjct: 188 LRLLGA 193
>pdb|2VRN|A Chain A, The Structure Of The Stress Response Protein Dr1199 From
Deinococcus Radiodurans: A Member Of The Dj-1
Superfamily
pdb|2VRN|B Chain B, The Structure Of The Stress Response Protein Dr1199 From
Deinococcus Radiodurans: A Member Of The Dj-1
Superfamily
Length = 190
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 46 HNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 104
+ ++ E+ + YDGL++PGG P+ L + + + VR ++GK IA+I HG
Sbjct: 60 EKYRVDHVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAIXHGPW 119
Query: 105 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEF 161
L+ + +G K T++ +K L AGA W++ E CV D ++T + P F
Sbjct: 120 SLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEE----CVTDKGVVTSRKPDDLPAF 172
>pdb|3FSE|A Chain A, Crystal Structure Of A Two-Domain Protein Containing
Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496)
From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution
pdb|3FSE|B Chain B, Crystal Structure Of A Two-Domain Protein Containing
Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496)
From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution
Length = 365
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 34 STGHQTYSETRGH-NFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNS 92
S ++ Y RG + + T E +++D +VIPGG AP+ N + + V++
Sbjct: 45 SRXNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGXAPDKXRRNPNTVRFVQEAXEQ 104
Query: 93 GKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT 151
GK +A++ HG +L D+++G++ T + + AGA +++ A VVDGN+IT
Sbjct: 105 GKLVAAVXHGPQVLIEGDLLRGKQATGFIAISKDXXNAGADYLDE----ALVVDGNLIT 159
>pdb|4E08|A Chain A, Crystal Structure Of Drosophila Melanogaster Dj-1beta
pdb|4E08|B Chain B, Crystal Structure Of Drosophila Melanogaster Dj-1beta
Length = 190
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 11/112 (9%)
Query: 51 NATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVI--DLVRKFSNSGKTIASICHGQLILAA 108
+ + ++ K+D +V+PGG AM +S + DL+R + G IA+IC +LA
Sbjct: 57 DTSLAQVASDKFDVVVLPGGLGGSN-AMGESSLVGDLLRSQESGGGLIAAICAAPTVLAK 115
Query: 109 ADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYE 156
V G+ T+YP +KP L+ S+++ +T+ V DGN+IT G YE
Sbjct: 116 HGVASGKSLTSYPSMKPQLV-NNYSYVDDKTV---VKDGNLITSRGPGTAYE 163
>pdb|3NOR|A Chain A, Crystal Structure Of T102s Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 48 FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 107
L AT D D + IPGG L + + +R+ + + + S+C G L+L
Sbjct: 52 LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVCSGSLVLG 111
Query: 108 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 152
AA +++G++ T + +L GA + V DGN++TG
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152
>pdb|3NOV|A Chain A, Crystal Structure Of D17e Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 47 NFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 106
L AT D D + IPGG L + + +R+ + + + S+C G L+L
Sbjct: 51 GLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVCTGSLVL 110
Query: 107 AAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 152
AA +++G++ T + +L GA + V DGN++TG
Sbjct: 111 GAAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152
>pdb|3NOO|A Chain A, Crystal Structure Of C101a Isocyanide Hydratase From
Pseudomonas Fluorescens
pdb|3NOO|B Chain B, Crystal Structure Of C101a Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 48 FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 107
L AT D D + IPGG L + + +R+ + + + S+ G L+L
Sbjct: 52 LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVATGSLVLG 111
Query: 108 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 152
AA +++G++ T + +L GA + V DGN++TG
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152
>pdb|3NOQ|A Chain A, Crystal Structure Of C101s Isocyanide Hydratase From
Pseudomonas Fluorescens
pdb|3NOQ|B Chain B, Crystal Structure Of C101s Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 48 FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 107
L AT D D + IPGG L + + +R+ + + + S+ G L+L
Sbjct: 52 LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLG 111
Query: 108 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 152
AA +++G++ T + +L GA + V DGN++TG
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152
>pdb|3NON|A Chain A, Crystal Structure Of Isocyanide Hydratase From Pseudomonas
Fluorescens
pdb|3NON|B Chain B, Crystal Structure Of Isocyanide Hydratase From Pseudomonas
Fluorescens
Length = 231
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 48 FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 107
L AT D D + IPGG L + + +R+ + + + S+ G L+L
Sbjct: 52 LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVXTGSLVLG 111
Query: 108 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 152
AA +++G++ T + +L GA + V DGN++TG
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152
>pdb|2AB0|A Chain A, Crystal Structure Of E. Coli Protein Yajl (Thij)
pdb|2AB0|B Chain B, Crystal Structure Of E. Coli Protein Yajl (Thij)
Length = 205
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 22 KSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGG-RAPEYLAMND 80
+ G TA S G+ + +RG +A E+ +YD +V+PGG + E +
Sbjct: 27 RGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDST 86
Query: 81 SVIDLVRKFSNSGKTIASICHG-QLILAAADVVKGRKCTAYPPVK 124
+++ V++F SG+ +A+IC +L D+ T +P +K
Sbjct: 87 LLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLK 131
>pdb|3MGK|A Chain A, Crystal Structure Of Probable ProteaseAMIDASE FROM
Clostridium Acetobutylicum Atcc 824
pdb|3MGK|B Chain B, Crystal Structure Of Probable ProteaseAMIDASE FROM
Clostridium Acetobutylicum Atcc 824
Length = 211
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 65 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVK 124
L +PGG +D+ I+ + K I S+C G +L+ A ++ G++ T
Sbjct: 69 LFVPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLSKAGILNGKRATTNKRSF 128
Query: 125 PVLIAAGAS--WIEPETMAACVVDGNIITGA 153
+ W++ A V DGNI T +
Sbjct: 129 KWVTEQNEDVLWVKE---ARWVKDGNIYTSS 156
>pdb|3EWN|A Chain A, Crystal Structure Of A ThijPFPI FAMILY PROTEIN FROM
PSEUDOMONAS Syringae
Length = 253
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 65 LVIPGGRAPEYLAMNDS-VIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPV 123
L PGG A +D+ + K I S+C G LIL AA ++KG K T++
Sbjct: 88 LFAPGGTDGTLAAASDAETLAFXADRGARAKYITSVCSGSLILGAAGLLKGYKATSHWSC 147
Query: 124 KPVLIAAGASWIEPETMAACVVDGNIITGA 153
+ L GA T A V D N ITGA
Sbjct: 148 RDALAGFGAI----PTEARVVRDRNRITGA 173
>pdb|2FEX|A Chain A, The Crystal Structure Of Dj-1 Superfamily Protein Atu0886
From Agrobacterium Tumefaciens
pdb|2FEX|B Chain B, The Crystal Structure Of Dj-1 Superfamily Protein Atu0886
From Agrobacterium Tumefaciens
pdb|2FEX|C Chain C, The Crystal Structure Of Dj-1 Superfamily Protein Atu0886
From Agrobacterium Tumefaciens
Length = 188
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 31 VHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFS 90
VH + + G + ++D +DP D LVIPGG + E D + LV++F
Sbjct: 33 VHATPDGXPVTSXGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAAD-LGGLVKRFR 91
Query: 91 NSGKTIASIC 100
+ + +A IC
Sbjct: 92 DRDRLVAGIC 101
>pdb|3BHN|A Chain A, Crystal Structure Of A Dj-1PFPI-Like Protein (Shew_2856)
From Shewanella Loihica Pv-4 At 1.76 A Resolution
Length = 236
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 77 AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIE 136
A+ D K S + I SIC G +L ++KG+K T P K VL G +
Sbjct: 96 ALQDENFXSALKLDPSRQLIGSICAGSFVLHELGLLKGKKLTTNPDAKAVLQGXGGDVQD 155
Query: 137 PETMAACVVDGNIIT 151
V++GNI T
Sbjct: 156 ----LPLVIEGNIAT 166
>pdb|3OT1|A Chain A, Crystal Structure Of Vc2308 Protein
Length = 208
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 43 TRGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICH 101
+RG T + +D L +PGG + A + +++ L+ FS GK +A+IC
Sbjct: 53 SRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICA 112
Query: 102 G-QLILAAADVVKGRKCTAYP 121
L+ A G + T +P
Sbjct: 113 TPALVFAKQQKFVGARXTCHP 133
>pdb|2NV2|B Chain B, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|D Chain D, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|F Chain F, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|H Chain H, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|J Chain J, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|L Chain L, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|N Chain N, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|P Chain P, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|R Chain R, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|T Chain T, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|V Chain V, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|X Chain X, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
Length = 204
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TKYDGLVIPGGRAPEYLAMNDS--VIDLVRKFSNSGKTIASICHGQLILA 107
+ DGL++PGG + + D+ ++ +R+F+ GK + C G +ILA
Sbjct: 37 NEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILA 86
>pdb|2NV0|A Chain A, Structure Of The Glutaminase Subunit Pdx2 (Yaae) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV0|B Chain B, Structure Of The Glutaminase Subunit Pdx2 (Yaae) Of Plp
Synthase From Bacillus Subtilis
Length = 196
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 60 TKYDGLVIPGGRAPEYLAMNDS--VIDLVRKFSNSGKTIASICHGQLILA 107
+ DGL++PGG + + D+ ++ +R+F+ GK + C G +ILA
Sbjct: 37 NEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILA 86
>pdb|1R9G|A Chain A, Three-Dimensional Structure Of Yaae From Bacillus Subtilis
pdb|1R9G|B Chain B, Three-Dimensional Structure Of Yaae From Bacillus Subtilis
Length = 216
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 60 TKYDGLVIPGGRAPEYLAMNDS--VIDLVRKFSNSGKTIASICHGQLILA 107
+ DGL++PGG + + D+ + +R+F+ GK C G +ILA
Sbjct: 57 NEVDGLILPGGESTTXRRLIDTYQFXEPLREFAAQGKPXFGTCAGLIILA 106
>pdb|2YKK|A Chain A, Structure Of A Paenibacillus Polymyxa Xyloglucanase From
Glycoside Hydrolase Family 44
pdb|3ZQ9|A Chain A, Structure Of A Paenibacillus Polymyxa Xyloglucanase From
Glycoside Hydrolase Family 44
Length = 524
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 99 ICHGQL---ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATY 155
+ HGQ I D K RK P+ P + E MAA + GN +TG +
Sbjct: 1 VVHGQTAKTITIKVDTFKDRK-----PISPYIYGTNQDLAGDENMAARRLGGNRMTGYNW 55
Query: 156 EGH 158
E +
Sbjct: 56 ENN 58
>pdb|2YIH|A Chain A, Structure Of A Paenibacillus Polymyxa Xyloglucanase From
Gh Family 44 With Xyloglucan
pdb|2YJQ|A Chain A, Structure Of A Paenibacillus Polymyxa Xyloglucanase From
Glycoside Hydrolase Family 44
pdb|2YJQ|B Chain B, Structure Of A Paenibacillus Polymyxa Xyloglucanase From
Glycoside Hydrolase Family 44
Length = 524
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 99 ICHGQL---ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATY 155
+ HGQ I D K RK P+ P + E MAA + GN +TG +
Sbjct: 1 VVHGQTAKTITIKVDTFKDRK-----PISPYIYGTNQDLAGDENMAARRLGGNRMTGYNW 55
Query: 156 EGH 158
E +
Sbjct: 56 ENN 58
>pdb|3CNE|A Chain A, Crystal Structure Of The Putative Protease I From
Bacteroides Thetaiotaomicron
pdb|3CNE|B Chain B, Crystal Structure Of The Putative Protease I From
Bacteroides Thetaiotaomicron
pdb|3CNE|C Chain C, Crystal Structure Of The Putative Protease I From
Bacteroides Thetaiotaomicron
pdb|3CNE|D Chain D, Crystal Structure Of The Putative Protease I From
Bacteroides Thetaiotaomicron
Length = 175
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 61 KYDGLVIPGGRA----PEYLAM--NDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKG 114
++D LV G A +Y N + ++++ F GK C G + KG
Sbjct: 66 EFDALVFSCGDAVPVFQQYANQPYNVDLXEVIKTFGEKGKXXIGHCAGAXXFDFTGITKG 125
Query: 115 RKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT 151
+K +P KP + A+ + E +DGN T
Sbjct: 126 KKVAVHPLAKPAIQNGIATDEKSE------IDGNFFT 156
>pdb|1GPW|B Chain B, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|D Chain D, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|F Chain F, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1K9V|F Chain F, Structural Evidence For Ammonia Tunelling Across The
(Beta- Alpha)8-Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|B Chain B, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|D Chain D, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|F Chain F, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
Length = 201
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 62 YDGLVIPG----GRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG-QLILAAADVVKGRK 116
YD L IPG G L ND +ID VRK + + +C G QL+ ++ G K
Sbjct: 43 YDLLFIPGVGHFGEGMRRLREND-LIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVK 101
>pdb|1KXJ|A Chain A, The Crystal Structure Of Glutamine Amidotransferase From
Thermotoga Maritima
pdb|1KXJ|B Chain B, The Crystal Structure Of Glutamine Amidotransferase From
Thermotoga Maritima
Length = 205
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 62 YDGLVIPG----GRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG-QLILAAADVVKGRK 116
YD L IPG G L ND +ID VRK + + +C G QL+ ++ G K
Sbjct: 45 YDLLFIPGVGHFGEGMRRLREND-LIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVK 103
>pdb|2WJZ|B Chain B, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
pdb|2WJZ|D Chain D, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
pdb|2WJZ|F Chain F, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
Length = 201
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 62 YDGLVIPG----GRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG-QLILAAADVVKGRK 116
YD L IPG G L ND +ID VRK + + +C G QL+ ++ G K
Sbjct: 43 YDLLFIPGVGHFGEGMRRLREND-LIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVK 101
>pdb|3N7T|A Chain A, Crystal Structure Of A Macrophage Binding Protein From
Cocci Immitis
Length = 247
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 69/207 (33%), Gaps = 35/207 (16%)
Query: 3 PFQALLAFGVSVDAACP----GKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATF---D 55
PF L A G VD A G + + + +SE +N
Sbjct: 40 PFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFMEKMNKQVFKAG 99
Query: 56 EIDPTKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAA------ 108
++ P Y + + GG Y + ++ + G I ++CHG +L
Sbjct: 100 DLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGIHDENG 159
Query: 109 ADVVKGRKCTAYPPVKPVLI-------------------AAGASWIEPETMAA--CVVDG 147
V+K + T + ++I A A ++ PE C VDG
Sbjct: 160 DSVIKDKTVTGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFCKVDG 219
Query: 148 NIITGATYEGHPEFIRLFLKALGGTIT 174
I+TGA + R +K G +
Sbjct: 220 RIVTGANPQSATNTARDTIKVYEGIVN 246
>pdb|1VHJ|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
pdb|1VHJ|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
pdb|1VHJ|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
pdb|1VHJ|D Chain D, Crystal Structure Of Purine Nucleoside Phosphorylase
pdb|1VHJ|E Chain E, Crystal Structure Of Purine Nucleoside Phosphorylase
pdb|1VHJ|F Chain F, Crystal Structure Of Purine Nucleoside Phosphorylase
pdb|1VHW|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase With
Adenosine
pdb|1VHW|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase With
Adenosine
pdb|1VHW|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase With
Adenosine
pdb|1VHW|D Chain D, Crystal Structure Of Purine Nucleoside Phosphorylase With
Adenosine
pdb|1VHW|E Chain E, Crystal Structure Of Purine Nucleoside Phosphorylase With
Adenosine
pdb|1VHW|F Chain F, Crystal Structure Of Purine Nucleoside Phosphorylase With
Adenosine
Length = 253
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK 61
V +A +GV AA G K+ +C + H TG QT SE R + TF+E+
Sbjct: 181 VEMEAAGIYGV---AAEYGAKALAICTVSDHIKTGEQTTSEERQN------TFNEMIEIA 231
Query: 62 YDGLVI 67
D ++I
Sbjct: 232 LDSVLI 237
>pdb|3OF3|A Chain A, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|B Chain B, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|C Chain C, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|D Chain D, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|E Chain E, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|F Chain F, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|G Chain G, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|H Chain H, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|I Chain I, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|J Chain J, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|K Chain K, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
pdb|3OF3|L Chain L, Crystal Structure Of Pnp With An Inhibitor Dadme_immh From
Vibrio Cholerae
Length = 241
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK 61
V +A +GV AA G K+ +C + H TG QT SE R + TF+E+
Sbjct: 179 VEMEAAGIYGV---AAEYGAKALAICTVSDHIKTGEQTTSEERQN------TFNEMIEIA 229
Query: 62 YDGLVI 67
D ++I
Sbjct: 230 LDSVLI 235
>pdb|2VJH|B Chain B, The Structure Of Phycoerythrin From Gloeobacter Violaceus
pdb|2VJH|D Chain D, The Structure Of Phycoerythrin From Gloeobacter Violaceus
Length = 177
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 16/76 (21%)
Query: 75 YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASW 134
Y+A + +D V +++ I S D V G C P LI+AG
Sbjct: 30 YIANGNKRLDAVNAITSNASCIVS-----------DAVSGMICE-----NPGLISAGGXC 73
Query: 135 IEPETMAACVVDGNII 150
MAAC+ DG I+
Sbjct: 74 YTNRRMAACLRDGEIV 89
>pdb|3L3B|A Chain A, Crystal Structure Of Isoprenoid Biosynthesis Protein With
Amidotransferase-Like Domain From Ehrlichia Chaffeensis
At 1.90a Resolution
pdb|3L3B|B Chain B, Crystal Structure Of Isoprenoid Biosynthesis Protein With
Amidotransferase-Like Domain From Ehrlichia Chaffeensis
At 1.90a Resolution
Length = 242
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 19 PGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFD--EIDPTKYDGLVIPGGR--APE 74
P K V +S G A + +D +I ++D LVIPGG A
Sbjct: 63 PNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQIRVEEFDMLVIPGGYGVAKN 122
Query: 75 YLAM------NDSVI----DLVRKFSNSGKTIASIC 100
+ + ND ++ + VR+F N+ K I ++C
Sbjct: 123 FSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVC 158
>pdb|1Q7R|A Chain A, X-Ray Crystallographic Analysis Of A Predicted
Amidotransferase From B. Stearothermophilus At 1.9 A
Resolution
Length = 219
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 63 DGLVIPGGRAPEYLAMNDS--VIDLVRKFSNSGKTIASICHGQLILA 107
DGLV+PGG + + D + + +++F+ +GK C G ++LA
Sbjct: 62 DGLVLPGGESTTXRRLIDRYGLXEPLKQFAAAGKPXFGTCAGLILLA 108
>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
pdb|8LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 330
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 101 HGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPET 139
HG L L A +V G+ + K V+I AGA E E+
Sbjct: 68 HGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGES 106
>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 329
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 101 HGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPET 139
HG L L A +V G+ + K V+I AGA E E+
Sbjct: 67 HGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGES 105
>pdb|1B8D|B Chain B, Crystal Structure Of A Phycourobilin-Containing
Phycoerythrin
pdb|1B8D|L Chain L, Crystal Structure Of A Phycourobilin-Containing
Phycoerythrin
Length = 177
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 109 ADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNII 150
+D V G C P LIA G MAAC+ DG II
Sbjct: 53 SDAVSGMICE-----NPGLIAPGGXCYTNRRMAACLRDGEII 89
>pdb|3LDH|A Chain A, A Comparison Of The Structures Of Apo Dogfish M4 Lactate
Dehydrogenase And Its Ternary Complexes
Length = 330
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 101 HGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPET 139
HG L L A +V G+ + K V+I AGA E E+
Sbjct: 68 HGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGES 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,209,421
Number of Sequences: 62578
Number of extensions: 254327
Number of successful extensions: 556
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 524
Number of HSP's gapped (non-prelim): 41
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)