Query 029299
Match_columns 195
No_of_seqs 164 out of 1239
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 10:40:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029299.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029299hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03169 GATase1_PfpI_1 Type 1 100.0 2E-32 4.4E-37 211.3 17.0 164 2-169 17-180 (180)
2 TIGR01382 PfpI intracellular p 100.0 5E-32 1.1E-36 206.2 16.2 150 2-170 17-166 (166)
3 cd03135 GATase1_DJ-1 Type 1 gl 100.0 1.6E-31 3.4E-36 202.5 15.5 147 2-169 16-163 (163)
4 cd03134 GATase1_PfpI_like A ty 100.0 5.1E-31 1.1E-35 200.5 15.1 146 2-167 17-164 (165)
5 cd03147 GATase1_Ydr533c_like T 100.0 3E-31 6.6E-36 211.9 13.4 169 1-169 28-231 (231)
6 cd03139 GATase1_PfpI_2 Type 1 100.0 4.4E-31 9.5E-36 203.8 12.0 160 2-182 16-182 (183)
7 TIGR01383 not_thiJ DJ-1 family 100.0 1.4E-30 3.1E-35 200.4 14.2 153 2-174 17-172 (179)
8 cd03137 GATase1_AraC_1 AraC tr 100.0 1.2E-30 2.7E-35 202.1 13.2 155 2-176 16-179 (187)
9 cd03141 GATase1_Hsp31_like Typ 100.0 1E-30 2.3E-35 208.0 12.8 169 1-169 26-221 (221)
10 cd03148 GATase1_EcHsp31_like T 100.0 4.3E-30 9.2E-35 205.4 13.6 167 1-169 29-231 (232)
11 KOG2764 Putative transcription 100.0 9.1E-30 2E-34 197.4 14.8 156 1-175 22-179 (247)
12 PRK04155 chaperone protein Hch 100.0 5.3E-30 1.2E-34 210.1 13.9 170 1-172 80-284 (287)
13 cd03136 GATase1_AraC_ArgR_like 100.0 6.7E-30 1.5E-34 197.9 13.2 158 2-182 16-184 (185)
14 cd03140 GATase1_PfpI_3 Type 1 100.0 1.3E-29 2.8E-34 194.0 12.4 149 2-171 16-168 (170)
15 PF13278 DUF4066: Putative ami 100.0 4.9E-29 1.1E-33 189.9 14.8 146 2-167 13-166 (166)
16 cd03138 GATase1_AraC_2 AraC tr 100.0 3.7E-29 8E-34 195.2 13.9 146 10-176 36-187 (195)
17 PF01965 DJ-1_PfpI: DJ-1/PfpI 100.0 5.4E-29 1.2E-33 186.3 11.1 141 13-170 1-147 (147)
18 PRK11574 oxidative-stress-resi 100.0 9.6E-28 2.1E-32 187.5 14.5 171 1-190 19-195 (196)
19 COG4977 Transcriptional regula 99.9 2.8E-27 6.1E-32 195.9 13.0 139 39-182 56-197 (328)
20 COG0693 ThiJ Putative intracel 99.9 1.8E-26 4E-31 179.1 16.2 159 1-173 19-186 (188)
21 PRK09393 ftrA transcriptional 99.9 6.4E-27 1.4E-31 195.8 14.4 161 2-183 27-197 (322)
22 cd03133 GATase1_ES1 Type 1 glu 99.9 4.6E-25 9.9E-30 173.8 15.8 158 1-165 20-202 (213)
23 PRK11780 isoprenoid biosynthes 99.9 5.3E-25 1.2E-29 174.3 14.0 149 1-156 23-193 (217)
24 cd03132 GATase1_catalase Type 99.8 1.1E-18 2.4E-23 129.6 11.7 95 2-112 19-114 (142)
25 PRK11249 katE hydroperoxidase 99.5 1.4E-13 3E-18 124.9 9.9 96 2-113 615-711 (752)
26 cd01740 GATase1_FGAR_AT Type 1 99.3 1.3E-11 2.9E-16 99.3 9.3 114 4-153 16-136 (238)
27 COG3155 ElbB Uncharacterized p 99.2 6.4E-11 1.4E-15 88.0 9.1 155 3-167 25-200 (217)
28 PRK03619 phosphoribosylformylg 99.1 5.5E-10 1.2E-14 88.8 9.7 57 59-115 39-101 (219)
29 PRK01175 phosphoribosylformylg 99.1 4.5E-10 9.7E-15 91.4 8.2 83 3-115 20-111 (261)
30 TIGR01737 FGAM_synth_I phospho 98.9 8E-09 1.7E-13 82.6 9.7 56 60-115 39-100 (227)
31 COG0047 PurL Phosphoribosylfor 98.9 4.8E-09 1E-13 82.4 6.9 54 61-114 43-102 (231)
32 cd03130 GATase1_CobB Type 1 gl 98.8 2.8E-08 6.1E-13 77.8 8.5 73 4-110 17-92 (198)
33 TIGR03800 PLP_synth_Pdx2 pyrid 98.7 2.6E-08 5.7E-13 77.2 6.7 50 60-109 35-86 (184)
34 PRK13526 glutamine amidotransf 98.7 2.7E-08 5.8E-13 76.4 5.7 54 60-114 38-97 (179)
35 PF13507 GATase_5: CobB/CobQ-l 98.6 4E-08 8.7E-13 79.9 5.0 57 59-115 44-112 (259)
36 cd01653 GATase1 Type 1 glutami 98.6 3.3E-07 7.2E-12 62.7 8.6 76 2-106 16-92 (115)
37 PRK13525 glutamine amidotransf 98.5 4.5E-07 9.7E-12 70.6 7.2 50 60-109 37-88 (189)
38 PRK13527 glutamine amidotransf 98.4 5.9E-07 1.3E-11 70.4 6.4 50 60-109 42-93 (200)
39 cd01750 GATase1_CobQ Type 1 gl 98.4 9.3E-07 2E-11 69.0 7.4 51 60-110 36-89 (194)
40 cd03128 GAT_1 Type 1 glutamine 98.4 2E-06 4.4E-11 56.2 7.6 74 3-105 17-91 (92)
41 PRK13143 hisH imidazole glycer 98.3 1.3E-06 2.8E-11 68.5 6.5 50 60-109 37-87 (200)
42 PRK01077 cobyrinic acid a,c-di 98.3 2.4E-06 5.3E-11 74.9 8.7 51 59-109 285-338 (451)
43 cd01744 GATase1_CPSase Small c 98.3 1.9E-06 4.1E-11 66.3 7.1 48 60-109 38-85 (178)
44 cd01748 GATase1_IGP_Synthase T 98.2 3.1E-06 6.7E-11 66.2 6.6 50 60-109 35-87 (198)
45 cd01749 GATase1_PB Glutamine A 98.2 3.3E-06 7.2E-11 65.3 6.4 50 60-109 34-85 (183)
46 PRK13141 hisH imidazole glycer 98.2 3.8E-06 8.2E-11 66.0 5.7 50 60-109 36-88 (205)
47 PRK07053 glutamine amidotransf 98.2 1.2E-05 2.7E-10 64.5 8.6 50 60-109 46-99 (234)
48 PLN02832 glutamine amidotransf 98.1 6.3E-06 1.4E-10 66.5 6.1 50 60-109 37-88 (248)
49 PRK06895 putative anthranilate 98.0 1.6E-05 3.5E-10 61.8 7.1 47 60-109 42-88 (190)
50 PF07685 GATase_3: CobB/CobQ-l 98.0 8.5E-06 1.9E-10 61.5 5.4 52 59-110 5-59 (158)
51 TIGR00888 guaA_Nterm GMP synth 98.0 1.5E-05 3.3E-10 61.7 6.2 46 61-109 41-86 (188)
52 TIGR01857 FGAM-synthase phosph 98.0 1.5E-05 3.3E-10 76.7 7.3 57 59-115 1029-1096(1239)
53 TIGR00379 cobB cobyrinic acid 98.0 2.8E-05 6.1E-10 68.2 8.1 65 45-109 270-337 (449)
54 PLN03206 phosphoribosylformylg 97.9 3.7E-05 8.1E-10 74.6 8.7 58 59-116 1080-1149(1307)
55 CHL00188 hisH imidazole glycer 97.9 1.9E-05 4.2E-10 62.4 5.7 56 60-116 38-106 (210)
56 COG1797 CobB Cobyrinic acid a, 97.9 2.8E-05 6E-10 66.9 6.7 73 4-109 264-339 (451)
57 PRK06490 glutamine amidotransf 97.9 5.9E-05 1.3E-09 60.8 8.2 50 60-109 51-102 (239)
58 PRK08250 glutamine amidotransf 97.9 2.8E-05 6E-10 62.5 6.2 50 60-109 44-100 (235)
59 cd01742 GATase1_GMP_Synthase T 97.9 5.1E-05 1.1E-09 58.2 7.4 48 59-109 39-86 (181)
60 cd01741 GATase1_1 Subgroup of 97.9 2.4E-05 5.2E-10 60.5 5.2 51 59-109 44-97 (188)
61 TIGR01735 FGAM_synt phosphorib 97.9 4.3E-05 9.2E-10 74.5 7.9 58 58-115 1097-1167(1310)
62 PRK08007 para-aminobenzoate sy 97.9 3.2E-05 6.9E-10 60.0 5.7 47 60-109 42-88 (187)
63 PRK12564 carbamoyl phosphate s 97.8 5E-05 1.1E-09 64.7 6.8 48 60-109 217-264 (360)
64 PRK05297 phosphoribosylformylg 97.8 9.9E-05 2.1E-09 72.0 8.7 56 59-114 1078-1146(1290)
65 TIGR01855 IMP_synth_hisH imida 97.8 7.5E-05 1.6E-09 58.3 6.5 49 60-109 35-87 (196)
66 PRK13896 cobyrinic acid a,c-di 97.8 9.5E-05 2.1E-09 64.4 7.6 50 59-109 272-324 (433)
67 PF01174 SNO: SNO glutamine am 97.8 1.9E-05 4.1E-10 60.8 2.9 60 60-119 32-100 (188)
68 PRK06774 para-aminobenzoate sy 97.8 5.6E-05 1.2E-09 58.7 5.6 47 60-109 42-88 (191)
69 PRK07765 para-aminobenzoate sy 97.7 7.4E-05 1.6E-09 59.2 6.1 48 60-109 45-92 (214)
70 cd01745 GATase1_2 Subgroup of 97.7 7.3E-05 1.6E-09 58.1 5.9 50 60-109 52-116 (189)
71 PRK00784 cobyric acid synthase 97.7 0.0001 2.2E-09 65.3 7.5 64 44-109 275-341 (488)
72 TIGR00566 trpG_papA glutamine 97.7 8.6E-05 1.9E-09 57.6 6.0 47 60-109 42-88 (188)
73 COG0311 PDX2 Predicted glutami 97.7 3.8E-05 8.2E-10 58.7 3.4 49 60-108 37-87 (194)
74 PRK05670 anthranilate synthase 97.7 0.00012 2.7E-09 56.7 6.1 46 61-109 43-88 (189)
75 PHA03366 FGAM-synthase; Provis 97.6 0.00019 4.1E-09 70.1 8.4 55 59-113 1070-1137(1304)
76 PRK05665 amidotransferase; Pro 97.6 9.6E-05 2.1E-09 59.6 5.4 51 59-109 55-107 (240)
77 PRK09065 glutamine amidotransf 97.6 9E-05 1.9E-09 59.7 4.9 51 59-109 52-104 (237)
78 PLN02617 imidazole glycerol ph 97.6 0.00025 5.5E-09 63.4 7.8 50 60-109 43-95 (538)
79 PRK13181 hisH imidazole glycer 97.6 0.00011 2.3E-09 57.6 4.9 50 60-109 36-88 (199)
80 PRK13170 hisH imidazole glycer 97.6 0.00016 3.4E-09 56.5 5.8 47 60-109 37-86 (196)
81 PRK05637 anthranilate synthase 97.6 0.0002 4.2E-09 56.6 6.1 47 60-109 43-89 (208)
82 PF00117 GATase: Glutamine ami 97.6 0.00015 3.2E-09 56.1 5.3 49 59-109 40-88 (192)
83 PRK13152 hisH imidazole glycer 97.6 0.00034 7.4E-09 54.8 7.4 50 60-109 36-89 (201)
84 COG0518 GuaA GMP synthase - Gl 97.5 0.00024 5.1E-09 55.7 5.9 57 53-109 37-95 (198)
85 TIGR01368 CPSaseIIsmall carbam 97.5 0.00024 5.1E-09 60.5 6.4 46 61-109 214-259 (358)
86 CHL00197 carA carbamoyl-phosph 97.5 0.00035 7.6E-09 59.9 7.2 48 60-109 232-279 (382)
87 CHL00101 trpG anthranilate syn 97.5 0.00021 4.6E-09 55.5 5.4 47 60-109 42-88 (190)
88 PRK12838 carbamoyl phosphate s 97.5 0.00026 5.7E-09 60.2 6.3 47 60-109 207-253 (354)
89 cd01743 GATase1_Anthranilate_S 97.5 0.0004 8.7E-09 53.5 6.9 47 60-109 41-87 (184)
90 TIGR01739 tegu_FGAM_synt herpe 97.4 0.00047 1E-08 67.0 8.1 56 59-114 971-1039(1202)
91 PRK07649 para-aminobenzoate/an 97.4 0.00031 6.7E-09 54.9 5.7 47 60-109 42-88 (195)
92 PRK13146 hisH imidazole glycer 97.4 0.00032 6.8E-09 55.4 5.7 51 60-110 40-94 (209)
93 COG0118 HisH Glutamine amidotr 97.4 0.00019 4.1E-09 55.8 4.3 50 60-109 38-90 (204)
94 PRK08857 para-aminobenzoate sy 97.4 0.00038 8.3E-09 54.2 6.1 46 61-109 43-88 (193)
95 PRK13142 hisH imidazole glycer 97.4 0.00035 7.7E-09 54.4 5.5 48 60-109 36-86 (192)
96 PRK00758 GMP synthase subunit 97.4 0.00033 7.1E-09 54.0 5.2 44 60-109 39-83 (184)
97 PLN02335 anthranilate synthase 97.3 0.00054 1.2E-08 54.6 5.9 47 60-109 61-107 (222)
98 PRK14004 hisH imidazole glycer 97.3 0.00032 7E-09 55.4 4.4 49 60-109 36-88 (210)
99 cd03144 GATase1_ScBLP_like Typ 97.2 0.00037 8E-09 49.7 3.2 45 60-106 43-90 (114)
100 PRK07567 glutamine amidotransf 97.1 0.00066 1.4E-08 54.8 4.7 51 59-109 49-109 (242)
101 PLN02771 carbamoyl-phosphate s 97.1 0.0014 3.1E-08 56.6 6.8 47 60-109 280-326 (415)
102 PRK13566 anthranilate synthase 97.1 0.0013 2.7E-08 61.0 6.8 47 60-109 568-614 (720)
103 cd01746 GATase1_CTP_Synthase T 97.1 0.0012 2.6E-08 53.1 5.6 48 59-109 53-100 (235)
104 COG0512 PabA Anthranilate/para 97.0 0.002 4.4E-08 49.8 6.2 58 59-119 43-109 (191)
105 PLN02347 GMP synthetase 97.0 0.0018 4E-08 58.0 6.8 50 60-109 52-102 (536)
106 TIGR01815 TrpE-clade3 anthrani 97.0 0.0021 4.5E-08 59.5 7.2 47 60-109 558-604 (717)
107 TIGR00313 cobQ cobyric acid sy 97.0 0.0013 2.9E-08 58.1 5.5 50 59-108 282-334 (475)
108 PRK05282 (alpha)-aspartyl dipe 96.8 0.0021 4.5E-08 51.6 5.0 52 59-110 77-130 (233)
109 PRK11366 puuD gamma-glutamyl-g 96.8 0.0022 4.8E-08 52.1 4.7 71 39-109 34-123 (254)
110 PRK14607 bifunctional glutamin 96.7 0.0035 7.5E-08 56.3 5.9 47 60-109 43-89 (534)
111 cd03146 GAT1_Peptidase_E Type 96.7 0.0017 3.6E-08 51.4 3.5 50 59-109 78-130 (212)
112 PRK06186 hypothetical protein; 96.7 0.0028 6E-08 50.7 4.6 44 59-105 51-94 (229)
113 COG0505 CarA Carbamoylphosphat 96.6 0.0065 1.4E-07 51.2 6.1 57 51-109 210-266 (368)
114 PRK05380 pyrG CTP synthetase; 96.5 0.0046 1E-07 55.0 5.3 47 59-108 341-387 (533)
115 PRK00074 guaA GMP synthase; Re 96.3 0.0085 1.8E-07 53.6 5.6 46 61-109 46-91 (511)
116 PRK06278 cobyrinic acid a,c-di 96.2 0.0049 1.1E-07 54.5 3.8 45 60-109 35-81 (476)
117 PRK09522 bifunctional glutamin 96.2 0.0093 2E-07 53.5 5.4 46 60-109 47-93 (531)
118 COG2071 Predicted glutamine am 96.1 0.01 2.3E-07 47.5 4.9 67 42-109 37-123 (243)
119 KOG3210 Imidazoleglycerol-phos 96.1 0.0052 1.1E-07 46.5 3.0 50 60-109 55-107 (226)
120 PLN02327 CTP synthase 95.9 0.015 3.3E-07 52.0 5.4 47 59-108 360-406 (557)
121 TIGR00337 PyrG CTP synthase. C 95.9 0.014 3.1E-07 51.9 5.2 46 60-108 342-387 (525)
122 cd01747 GATase1_Glutamyl_Hydro 95.5 0.026 5.7E-07 46.4 5.2 50 60-109 53-108 (273)
123 KOG2764 Putative transcription 95.2 0.015 3.3E-07 46.2 2.5 55 17-71 193-247 (247)
124 PF07722 Peptidase_C26: Peptid 95.2 0.029 6.4E-07 44.5 4.2 50 60-109 57-122 (217)
125 KOG0370 Multifunctional pyrimi 95.2 0.06 1.3E-06 50.8 6.6 48 60-109 209-256 (1435)
126 PF09825 BPL_N: Biotin-protein 95.1 0.035 7.5E-07 47.5 4.7 49 60-108 48-97 (367)
127 TIGR01823 PabB-fungal aminodeo 94.7 0.055 1.2E-06 50.6 5.3 47 60-109 52-102 (742)
128 COG0504 PyrG CTP synthase (UTP 94.7 0.069 1.5E-06 47.0 5.5 42 62-106 344-385 (533)
129 PRK05368 homoserine O-succinyl 94.7 0.067 1.5E-06 44.6 5.2 56 54-109 92-151 (302)
130 PLN02889 oxo-acid-lyase/anthra 94.6 0.066 1.4E-06 50.9 5.6 48 60-109 130-178 (918)
131 cd03145 GAT1_cyanophycinase Ty 94.6 0.12 2.5E-06 41.1 6.2 51 59-109 81-133 (217)
132 cd03129 GAT1_Peptidase_E_like 94.4 0.057 1.2E-06 42.4 4.0 51 59-109 78-130 (210)
133 COG3442 Predicted glutamine am 94.4 0.054 1.2E-06 42.9 3.7 50 60-109 51-103 (250)
134 PF03575 Peptidase_S51: Peptid 94.1 0.036 7.9E-07 41.4 2.2 50 60-109 34-85 (154)
135 KOG0623 Glutamine amidotransfe 93.6 0.16 3.5E-06 42.8 5.3 50 60-109 38-90 (541)
136 KOG3179 Predicted glutamine sy 93.2 0.11 2.5E-06 40.6 3.6 52 58-109 56-109 (245)
137 KOG2387 CTP synthase (UTP-ammo 92.5 0.25 5.4E-06 43.1 5.0 44 60-106 362-405 (585)
138 cd03131 GATase1_HTS Type 1 glu 92.0 0.15 3.1E-06 39.2 2.8 56 53-108 54-113 (175)
139 TIGR02069 cyanophycinase cyano 91.5 0.3 6.6E-06 39.6 4.3 50 59-108 80-131 (250)
140 COG3340 PepE Peptidase E [Amin 91.3 0.19 4.2E-06 39.7 2.9 51 60-110 83-135 (224)
141 COG4635 HemG Flavodoxin [Energ 91.1 0.4 8.8E-06 36.2 4.2 46 57-104 43-90 (175)
142 cd03143 A4_beta-galactosidase_ 90.8 1.5 3.2E-05 32.4 7.2 34 60-98 52-85 (154)
143 COG1492 CobQ Cobyric acid synt 89.8 0.85 1.8E-05 40.4 5.8 50 60-109 289-341 (486)
144 PF08532 Glyco_hydro_42M: Beta 89.6 1.1 2.4E-05 35.1 5.9 59 4-103 36-95 (207)
145 KOG1907 Phosphoribosylformylgl 87.2 1.3 2.9E-05 42.0 5.5 56 57-112 1099-1166(1320)
146 COG4285 Uncharacterized conser 78.0 2.8 6.1E-05 33.3 3.3 45 61-105 49-94 (253)
147 KOG1224 Para-aminobenzoate (PA 76.8 4.9 0.00011 36.2 4.8 46 60-108 63-110 (767)
148 COG4126 Hydantoin racemase [Am 75.6 20 0.00043 28.6 7.5 85 60-160 68-159 (230)
149 COG1058 CinA Predicted nucleot 70.1 3.7 8E-05 33.5 2.4 35 60-94 59-108 (255)
150 cd03142 GATase1_ThuA Type 1 gl 68.7 21 0.00045 28.4 6.3 43 59-103 56-98 (215)
151 COG4242 CphB Cyanophycinase an 67.0 9.3 0.0002 31.1 4.0 50 59-108 104-155 (293)
152 PRK04761 ppnK inorganic polyph 63.1 13 0.00028 30.1 4.2 39 58-104 22-60 (246)
153 COG4090 Uncharacterized protei 61.8 29 0.00063 25.4 5.3 49 60-111 84-133 (154)
154 KOG0026 Anthranilate synthase, 59.9 28 0.00061 26.6 5.2 65 56-123 58-132 (223)
155 PF12724 Flavodoxin_5: Flavodo 57.4 12 0.00027 27.2 3.0 44 58-103 40-85 (143)
156 PF12682 Flavodoxin_4: Flavodo 57.2 4.3 9.2E-05 30.4 0.5 42 58-101 70-111 (156)
157 PF12641 Flavodoxin_3: Flavodo 55.9 14 0.00031 27.8 3.1 39 59-101 37-75 (160)
158 PF06283 ThuA: Trehalose utili 55.6 36 0.00079 26.5 5.6 42 59-103 50-91 (217)
159 PF13380 CoA_binding_2: CoA bi 55.3 58 0.0013 22.9 6.1 69 4-102 20-88 (116)
160 PF04204 HTS: Homoserine O-suc 55.0 12 0.00026 31.2 2.8 53 53-105 90-146 (298)
161 PRK11104 hemG protoporphyrinog 54.5 20 0.00044 27.2 3.9 42 59-102 44-87 (177)
162 KOG1622 GMP synthase [Nucleoti 53.9 7.4 0.00016 34.3 1.4 52 51-109 49-104 (552)
163 PRK06242 flavodoxin; Provision 50.8 23 0.00051 25.6 3.6 44 59-104 41-85 (150)
164 PF01058 Oxidored_q6: NADH ubi 50.0 21 0.00046 25.7 3.2 41 60-104 44-84 (131)
165 cd05014 SIS_Kpsf KpsF-like pro 49.4 51 0.0011 23.0 5.1 39 60-103 46-84 (128)
166 PF09897 DUF2124: Uncharacteri 48.1 13 0.00029 27.6 1.8 48 61-111 80-128 (147)
167 PRK09271 flavodoxin; Provision 47.6 86 0.0019 23.2 6.3 43 60-102 50-94 (160)
168 TIGR01754 flav_RNR ribonucleot 46.9 32 0.0007 24.8 3.8 42 59-102 48-90 (140)
169 PRK02645 ppnK inorganic polyph 46.7 80 0.0017 26.3 6.5 37 60-104 56-93 (305)
170 COG1105 FruK Fructose-1-phosph 46.6 59 0.0013 27.3 5.6 48 59-108 127-174 (310)
171 PRK00561 ppnK inorganic polyph 46.5 29 0.00064 28.3 3.8 36 60-103 32-67 (259)
172 PRK05568 flavodoxin; Provision 46.5 73 0.0016 22.7 5.6 43 59-101 46-90 (142)
173 PRK06934 flavodoxin; Provision 46.2 17 0.00037 29.0 2.3 42 58-101 126-167 (221)
174 PRK06719 precorrin-2 dehydroge 46.0 1.1E+02 0.0024 22.7 6.6 69 5-97 30-98 (157)
175 PF09822 ABC_transp_aux: ABC-t 46.0 58 0.0013 26.3 5.5 72 59-137 195-267 (271)
176 PRK14817 NADH dehydrogenase su 45.4 40 0.00086 26.0 4.1 40 58-101 72-111 (181)
177 TIGR01001 metA homoserine O-su 44.9 16 0.00036 30.4 2.1 53 53-105 91-147 (300)
178 TIGR01753 flav_short flavodoxi 44.7 70 0.0015 22.5 5.3 43 60-103 44-90 (140)
179 PF09558 DUF2375: Protein of u 42.9 15 0.00032 23.5 1.2 19 86-104 39-57 (71)
180 COG2871 NqrF Na+-transporting 41.6 92 0.002 26.2 5.9 88 12-107 228-317 (410)
181 PRK14820 NADH dehydrogenase su 41.4 47 0.001 25.6 4.0 40 58-101 70-109 (180)
182 PF13241 NAD_binding_7: Putati 41.3 1E+02 0.0022 20.9 5.5 65 5-97 24-89 (103)
183 PRK06411 NADH dehydrogenase su 41.1 48 0.001 25.6 4.0 40 58-101 71-110 (183)
184 PRK06975 bifunctional uroporph 37.4 97 0.0021 28.9 6.1 47 60-112 54-101 (656)
185 PRK14077 pnk inorganic polypho 35.1 53 0.0011 27.2 3.7 37 60-104 63-99 (287)
186 PRK05569 flavodoxin; Provision 34.7 1E+02 0.0022 22.0 4.8 43 59-102 46-92 (141)
187 TIGR01957 nuoB_fam NADH-quinon 34.5 86 0.0019 23.3 4.3 40 58-101 54-93 (145)
188 COG4007 Predicted dehydrogenas 33.5 42 0.00092 27.7 2.7 85 5-105 38-122 (340)
189 PRK01911 ppnK inorganic polyph 33.2 60 0.0013 27.0 3.7 37 60-104 63-99 (292)
190 cd05008 SIS_GlmS_GlmD_1 SIS (S 33.1 1.2E+02 0.0026 20.9 4.9 38 60-102 45-82 (126)
191 cd00587 HCP_like The HCP famil 32.5 1.4E+02 0.0031 24.4 5.6 50 63-114 96-145 (258)
192 TIGR03127 RuMP_HxlB 6-phospho 32.0 2.1E+02 0.0046 21.2 6.4 38 59-101 70-107 (179)
193 PRK03372 ppnK inorganic polyph 32.0 63 0.0014 27.1 3.6 37 60-104 71-107 (306)
194 PRK02231 ppnK inorganic polyph 31.8 65 0.0014 26.5 3.6 36 60-103 41-76 (272)
195 cd04795 SIS SIS domain. SIS (S 31.7 1.3E+02 0.0029 18.9 4.6 35 61-100 47-81 (87)
196 PRK07116 flavodoxin; Provision 31.2 45 0.00097 24.7 2.5 41 59-101 74-114 (160)
197 TIGR02922 conserved hypothetic 31.1 29 0.00063 21.8 1.1 17 88-104 39-55 (67)
198 TIGR00441 gmhA phosphoheptose 30.0 1.5E+02 0.0032 21.8 5.1 37 60-101 78-114 (154)
199 PRK14814 NADH dehydrogenase su 29.9 93 0.002 24.2 4.0 40 58-101 70-109 (186)
200 cd00885 cinA Competence-damage 29.5 86 0.0019 23.7 3.8 34 60-93 57-105 (170)
201 PF03698 UPF0180: Uncharacteri 29.5 1.1E+02 0.0024 20.3 3.7 11 60-70 34-44 (80)
202 PRK02649 ppnK inorganic polyph 29.4 72 0.0016 26.7 3.6 37 61-105 68-104 (305)
203 PRK03673 hypothetical protein; 29.4 73 0.0016 27.8 3.7 33 60-92 59-106 (396)
204 PRK14815 NADH dehydrogenase su 29.4 1E+02 0.0022 23.9 4.1 40 58-101 70-109 (183)
205 COG2242 CobL Precorrin-6B meth 29.0 1.5E+02 0.0032 23.1 5.0 36 60-101 101-136 (187)
206 TIGR03294 FrhG coenzyme F420 h 28.5 1.1E+02 0.0024 24.3 4.4 38 60-101 49-86 (228)
207 PF12500 TRSP: TRSP domain C t 28.5 1.7E+02 0.0036 22.0 5.0 22 5-26 77-98 (155)
208 PRK04885 ppnK inorganic polyph 28.3 91 0.002 25.5 3.9 37 60-104 34-72 (265)
209 PRK03708 ppnK inorganic polyph 27.6 77 0.0017 26.1 3.4 36 60-104 56-91 (277)
210 PRK03378 ppnK inorganic polyph 27.4 91 0.002 25.9 3.8 36 60-103 62-97 (292)
211 PRK04539 ppnK inorganic polyph 27.4 88 0.0019 26.0 3.8 35 61-103 68-102 (296)
212 PRK02155 ppnK NAD(+)/NADH kina 27.3 85 0.0018 26.0 3.7 37 60-104 62-98 (291)
213 PRK06718 precorrin-2 dehydroge 26.9 3E+02 0.0064 21.3 6.5 71 5-96 27-97 (202)
214 PF13580 SIS_2: SIS domain; PD 26.9 1.3E+02 0.0028 21.6 4.2 36 59-99 101-136 (138)
215 TIGR02336 1,3-beta-galactosyl- 26.6 1.8E+02 0.0039 27.3 5.8 45 59-103 498-546 (719)
216 PRK05562 precorrin-2 dehydroge 26.5 2.5E+02 0.0054 22.4 6.0 74 5-99 42-116 (223)
217 PRK05708 2-dehydropantoate 2-r 26.5 1E+02 0.0022 25.5 4.0 40 60-104 69-108 (305)
218 PF04024 PspC: PspC domain; I 25.9 45 0.00097 20.8 1.4 13 92-104 9-21 (61)
219 PRK14816 NADH dehydrogenase su 25.9 1.4E+02 0.0029 23.2 4.2 40 58-101 78-117 (182)
220 COG0493 GltD NADPH-dependent g 25.7 1.8E+02 0.0039 25.9 5.6 67 5-72 140-219 (457)
221 cd05017 SIS_PGI_PMI_1 The memb 25.5 2.3E+02 0.005 19.5 5.2 38 60-102 42-79 (119)
222 PRK03094 hypothetical protein; 25.4 1.5E+02 0.0032 19.7 3.8 14 5-18 15-28 (80)
223 PF01513 NAD_kinase: ATP-NAD k 25.2 60 0.0013 26.6 2.4 37 59-103 74-110 (285)
224 cd05710 SIS_1 A subgroup of th 25.2 2.1E+02 0.0045 19.9 4.9 38 60-102 46-83 (120)
225 TIGR00685 T6PP trehalose-phosp 25.1 79 0.0017 25.1 3.0 44 61-104 9-52 (244)
226 COG0061 nadF NAD kinase [Coenz 25.0 1.1E+02 0.0024 25.1 3.9 38 59-104 53-90 (281)
227 PRK03670 competence damage-ind 24.9 1.1E+02 0.0023 25.0 3.7 32 61-92 60-106 (252)
228 COG1941 FrhG Coenzyme F420-red 24.7 1.6E+02 0.0034 23.9 4.5 36 60-101 50-85 (247)
229 PLN02929 NADH kinase 24.5 1E+02 0.0022 25.8 3.6 35 60-103 63-97 (301)
230 PF10034 Dpy19: Q-cell neurobl 24.2 37 0.00081 31.5 1.1 45 78-125 504-548 (642)
231 PRK13055 putative lipid kinase 24.1 47 0.001 27.9 1.6 16 5-20 27-42 (334)
232 PF07090 DUF1355: Protein of u 23.6 1.7E+02 0.0037 22.4 4.5 41 59-100 65-108 (177)
233 PRK14652 UDP-N-acetylenolpyruv 23.2 2.5E+02 0.0055 23.3 5.8 73 78-167 44-116 (302)
234 PRK13903 murB UDP-N-acetylenol 23.1 4.1E+02 0.0089 22.9 7.1 72 78-168 41-114 (363)
235 PRK00549 competence damage-ind 23.1 1.2E+02 0.0026 26.5 4.0 33 60-92 58-105 (414)
236 PF00710 Asparaginase: Asparag 23.0 1.7E+02 0.0038 24.4 4.8 35 61-99 224-259 (313)
237 cd02071 MM_CoA_mut_B12_BD meth 22.6 52 0.0011 23.2 1.4 16 5-20 21-36 (122)
238 cd02067 B12-binding B12 bindin 22.1 69 0.0015 22.2 1.9 16 5-20 21-36 (119)
239 PRK00414 gmhA phosphoheptose i 22.1 1.8E+02 0.0039 22.3 4.4 38 60-102 110-147 (192)
240 PRK13937 phosphoheptose isomer 21.3 2E+02 0.0043 21.9 4.5 37 60-101 105-141 (188)
241 PRK01231 ppnK inorganic polyph 21.0 1.3E+02 0.0027 25.1 3.5 37 60-104 61-97 (295)
242 cd05006 SIS_GmhA Phosphoheptos 20.8 2.1E+02 0.0046 21.3 4.5 38 60-102 100-137 (177)
243 TIGR00745 apbA_panE 2-dehydrop 20.7 1.4E+02 0.0031 23.9 3.8 39 60-103 58-96 (293)
244 PRK06703 flavodoxin; Provision 20.7 1.3E+02 0.0028 21.8 3.2 44 59-102 46-91 (151)
245 PLN02204 diacylglycerol kinase 20.6 62 0.0014 29.8 1.7 15 59-73 216-230 (601)
246 PF02310 B12-binding: B12 bind 20.6 30 0.00064 23.9 -0.3 16 5-20 22-37 (121)
247 CHL00023 ndhK NADH dehydrogena 20.6 2E+02 0.0044 23.0 4.3 40 58-101 68-107 (225)
248 PRK05752 uroporphyrinogen-III 20.3 4.2E+02 0.0092 21.0 6.4 46 60-111 54-102 (255)
No 1
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=2e-32 Score=211.30 Aligned_cols=164 Identities=54% Similarity=0.969 Sum_probs=137.8
Q ss_pred chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccChH
Q 029299 2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDS 81 (195)
Q Consensus 2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~~ 81 (195)
.|+++|+++|++|+++|+.+++.++.........+.+.+.+..|..+.++.+++++...+||+|+||||+++..+..++.
T Consensus 17 ~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liv~GG~~~~~~~~~~~ 96 (180)
T cd03169 17 VPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDALVIPGGRAPEYLRLDEK 96 (180)
T ss_pred HHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEEEEcCCCChhhhccCHH
Confidence 69999999999999999998754332221111122234556679999999999987767899999999987665556789
Q ss_pred HHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCCHHHH
Q 029299 82 VIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEF 161 (195)
Q Consensus 82 l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~~ 161 (195)
+.+||+++++++|+|++||+|+++|+++|||+|+++|+||...+.+++.+..+.+. .+++|||+|||+|+.++.+|
T Consensus 97 ~~~~l~~~~~~~k~i~~ic~G~~~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~----~~v~D~~iiT~~~~~~~~~f 172 (180)
T cd03169 97 VLAIVRHFAEANKPVAAICHGPQILAAAGVLKGRRCTAYPACKPEVELAGGTVVDD----GVVVDGNLVTAQAWPDHPAF 172 (180)
T ss_pred HHHHHHHHHHcCCEEEEECcHHHHHHHcCccCCCEEecccchHHHHHHCCCEEeec----cEEEECCEEEecCCchHHHH
Confidence 99999999999999999999999999999999999999999999999876666554 38999999999999999999
Q ss_pred HHHHHHHH
Q 029299 162 IRLFLKAL 169 (195)
Q Consensus 162 ~l~li~~l 169 (195)
+..+++.|
T Consensus 173 ~~~~~~~l 180 (180)
T cd03169 173 LREFLKLL 180 (180)
T ss_pred HHHHHHhC
Confidence 99999864
No 2
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=100.00 E-value=5e-32 Score=206.23 Aligned_cols=150 Identities=43% Similarity=0.753 Sum_probs=135.6
Q ss_pred chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccChH
Q 029299 2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDS 81 (195)
Q Consensus 2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~~ 81 (195)
.|++.|+++|++++++|+.++ +++++.|.++.++.++++++..+||+||||||.++..+..++.
T Consensus 17 ~~~~~l~~ag~~v~~vs~~~~----------------~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~~~~~~~~~ 80 (166)
T TIGR01382 17 YPLDRLREAGHEVDTVSKEAG----------------TTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNK 80 (166)
T ss_pred HHHHHHHHCCCEEEEEecCCC----------------ceeccCCceeeccCChhhCCHHHCcEEEECCCCCHHHhccCHH
Confidence 589999999999999998764 4677889999999999887666899999999987665667889
Q ss_pred HHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCCHHHH
Q 029299 82 VIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEF 161 (195)
Q Consensus 82 l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~~ 161 (195)
+.+||+++++++++++++|+|+++||++|||+|+++|+||...+.+++.+..+.+.+ .+++|||+|||+|+.++.+|
T Consensus 81 l~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~---~~v~dg~iiT~~~~~~~~~f 157 (166)
T TIGR01382 81 AVRLVREFVEKGKPVAAICHGPQLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIE---VVVVDGNLVTSRVPDDLPAF 157 (166)
T ss_pred HHHHHHHHHHcCCEEEEEChHHHHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCC---CEEEECCEEEeCCcccHHHH
Confidence 999999999999999999999999999999999999999999999998888887743 49999999999999999999
Q ss_pred HHHHHHHHc
Q 029299 162 IRLFLKALG 170 (195)
Q Consensus 162 ~l~li~~l~ 170 (195)
+..+++.++
T Consensus 158 a~~~~~~l~ 166 (166)
T TIGR01382 158 NREFLKLLG 166 (166)
T ss_pred HHHHHHHhC
Confidence 999999874
No 3
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=99.98 E-value=1.6e-31 Score=202.48 Aligned_cols=147 Identities=35% Similarity=0.588 Sum_probs=128.8
Q ss_pred chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCC-ChhhhccCh
Q 029299 2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGR-APEYLAMND 80 (195)
Q Consensus 2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~-~~~~l~~~~ 80 (195)
.|++.|+.+||+++++|+++++ .+.++.|..+.++.++++.+..+||+||||||. ++..+..++
T Consensus 16 ~~~~~~~~a~~~v~~vs~~~~~---------------~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~~ 80 (163)
T cd03135 16 TPVDVLRRAGIEVTTASLEKKL---------------AVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNE 80 (163)
T ss_pred HHHHHHHHCCCEEEEEEcCCCc---------------eEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhCH
Confidence 5899999999999999998764 233578999999999998777899999999998 565566799
Q ss_pred HHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCCHHH
Q 029299 81 SVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPE 160 (195)
Q Consensus 81 ~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~ 160 (195)
.+++||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+ .+..+.+. .+++|||++||+|+.++++
T Consensus 81 ~l~~~l~~~~~~~~~i~~ic~g~~~La~aglL~g~~~T~~~~~~~~~--~~~~~~~~----~~v~dg~l~T~~g~~s~~d 154 (163)
T cd03135 81 KLIKLLKEFNAKGKLIAAICAAPAVLAKAGLLKGKKATCYPGFEDKL--GGANYVDE----PVVVDGNIITSRGPGTAFE 154 (163)
T ss_pred HHHHHHHHHHHcCCEEEEEchhHHHHHHcCCcCCCeEEECchHHHhc--CCCeEecC----CEEEECCEEEcCCcccHHH
Confidence 99999999999999999999999999999999999999998876655 34555554 3999999999999999999
Q ss_pred HHHHHHHHH
Q 029299 161 FIRLFLKAL 169 (195)
Q Consensus 161 ~~l~li~~l 169 (195)
|++++|+++
T Consensus 155 ~al~li~~l 163 (163)
T cd03135 155 FALKIVEAL 163 (163)
T ss_pred HHHHHHHhC
Confidence 999999864
No 4
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=99.97 E-value=5.1e-31 Score=200.49 Aligned_cols=146 Identities=40% Similarity=0.717 Sum_probs=132.1
Q ss_pred chhHHHHhCCCeEEEeCCC-CCCCCCCCccccCCCCccccccccCc-ceeeccCCCCCCCCCcCEEEEcCCCChhhhccC
Q 029299 2 VPFQALLAFGVSVDAACPG-KKSGDVCPTAVHQSTGHQTYSETRGH-NFALNATFDEIDPTKYDGLVIPGGRAPEYLAMN 79 (195)
Q Consensus 2 ~p~~~l~~~G~~v~~~s~~-~~~~~~~~~~~~~~~~~~~v~~~~g~-~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~ 79 (195)
.|++.|+++|++++++|++ ++ +++++.|. .+.++..+++....+||+|+||||+++..+..+
T Consensus 17 ~~~~~l~~a~~~v~~vs~~~~~----------------~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~~~~~~~ 80 (165)
T cd03134 17 YPLYRLREAGAEVVVAGPEAGG----------------EIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNPDKLRRD 80 (165)
T ss_pred HHHHHHHHCCCEEEEEccCCCc----------------ccccCcCceeecCCCChHHCCHHHCCEEEECCCCChhhhccC
Confidence 4788999999999999998 54 47778899 999999998876668999999999876656678
Q ss_pred hHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCCHH
Q 029299 80 DSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHP 159 (195)
Q Consensus 80 ~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~ 159 (195)
+.+.+||+++++++|+|+++|+|+++|+++|+|+|+++|+||...+.+++.+..+.+.. +++|||+|||+|+.++.
T Consensus 81 ~~~~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~----~v~dg~iiT~~~~~~~~ 156 (165)
T cd03134 81 PDAVAFVRAFAEAGKPVAAICHGPWVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEE----VVVDGNLITSRNPDDLP 156 (165)
T ss_pred HHHHHHHHHHHHcCCeEEEEchHHHHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCC----EEEECCEEEecCcchHH
Confidence 99999999999999999999999999999999999999999999999998877777654 89999999999999999
Q ss_pred HHHHHHHH
Q 029299 160 EFIRLFLK 167 (195)
Q Consensus 160 ~~~l~li~ 167 (195)
+|++.+++
T Consensus 157 ~f~~~~~~ 164 (165)
T cd03134 157 AFNRAILK 164 (165)
T ss_pred HHHHHHHh
Confidence 99999986
No 5
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=99.97 E-value=3e-31 Score=211.91 Aligned_cols=169 Identities=23% Similarity=0.351 Sum_probs=134.4
Q ss_pred CchhHHHHhCCCeEEEeCCCCCC-CCCCCccccCCCC-cccc----ccccCcceeeccCCCCCCCCCcCEEEEcCCCCh-
Q 029299 1 MVPFQALLAFGVSVDAACPGKKS-GDVCPTAVHQSTG-HQTY----SETRGHNFALNATFDEIDPTKYDGLVIPGGRAP- 73 (195)
Q Consensus 1 ~~p~~~l~~~G~~v~~~s~~~~~-~~~~~~~~~~~~~-~~~v----~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~- 73 (195)
++||++|+++|++|+++||.+++ .++.+........ ...+ ..+.+.++..+.++++++..+||+||||||+++
T Consensus 28 ~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~iPGG~g~~ 107 (231)
T cd03147 28 LHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFFVAGGHGTL 107 (231)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEEECCCCchh
Confidence 47999999999999999998752 3322211110000 0112 234566788899999999899999999999875
Q ss_pred hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC-------CCCCCceEecCCCc-------------------hHHH
Q 029299 74 EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-------DVVKGRKCTAYPPV-------------------KPVL 127 (195)
Q Consensus 74 ~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a-------GlL~g~~~T~~~~~-------------------~~~l 127 (195)
.++..++.+.++|+++++++|+|++||||+.+|+.+ ++++||++|+|+.. .+.+
T Consensus 108 ~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~~~~~~e~~l 187 (231)
T cd03147 108 FDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKRNLESIEDIA 187 (231)
T ss_pred hhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhcccCCccHHHHH
Confidence 458899999999999999999999999999999987 99999999999864 3456
Q ss_pred HHCCCeeecCC-C-cceEEEcCCeEeCCCCCCHHHHHHHHHHHH
Q 029299 128 IAAGASWIEPE-T-MAACVVDGNIITGATYEGHPEFIRLFLKAL 169 (195)
Q Consensus 128 ~~~g~~~~~~~-~-~~~~v~Dg~iiT~~g~~~~~~~~l~li~~l 169 (195)
++.|+.|...+ . ...+++|||+||++++.++.+|++.+++.|
T Consensus 188 ~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l 231 (231)
T cd03147 188 ERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL 231 (231)
T ss_pred HHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence 66788888643 1 235899999999999999999999999864
No 6
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.97 E-value=4.4e-31 Score=203.83 Aligned_cols=160 Identities=24% Similarity=0.330 Sum_probs=138.6
Q ss_pred chhHHHHhCC-----CeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhh
Q 029299 2 VPFQALLAFG-----VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYL 76 (195)
Q Consensus 2 ~p~~~l~~~G-----~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l 76 (195)
.|+++|++++ ++|+++|++++ ++++++|..+.++..+++. .+||+||||||.++..+
T Consensus 16 ~~~d~~~~a~~~~~~~~v~~vs~~~~----------------~v~~~~g~~i~~d~~~~~~--~~~D~lvipgg~~~~~~ 77 (183)
T cd03139 16 GPYEVFGRAPRLAAPFEVFLVSETGG----------------PVSSRSGLTVLPDTSFADP--PDLDVLLVPGGGGTRAL 77 (183)
T ss_pred eHHHHHHHhhccCCCEEEEEEECCCC----------------ceEeCCCCEEcCCcccccC--CCCCEEEECCCcchhhh
Confidence 5789999998 99999999875 4788999999999998864 58999999999877656
Q ss_pred ccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCC
Q 029299 77 AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYE 156 (195)
Q Consensus 77 ~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~ 156 (195)
..++.+.+||+++++++|+|+++|+|+++|+++|+|+|+++|+||...+.+++.+..+... ..++.||+++||+|+.
T Consensus 78 ~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~---~~~v~dg~i~T~~g~~ 154 (183)
T cd03139 78 VNDPALLDFIRRQAARAKYVTSVCTGALLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVD---ARWVVDGNIWTSGGVS 154 (183)
T ss_pred ccCHHHHHHHHHhcccCCEEEEEchHHHHHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCC---CEEEecCCEEEcCcHH
Confidence 7899999999999999999999999999999999999999999999999998865444221 3599999999999999
Q ss_pred CHHHHHHHHHHHHcCcc-ccc-ccceee
Q 029299 157 GHPEFIRLFLKALGGTI-TGS-DKRILF 182 (195)
Q Consensus 157 ~~~~~~l~li~~l~~~~-a~~-~~~~~~ 182 (195)
++.+|++++|+++.++. +.+ ++.++|
T Consensus 155 a~~~~~l~ii~~~~g~~~a~~~a~~~~~ 182 (183)
T cd03139 155 AGIDMALALVARLFGEELAQAVALLIEY 182 (183)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHhcc
Confidence 99999999999887775 555 555543
No 7
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=99.97 E-value=1.4e-30 Score=200.37 Aligned_cols=153 Identities=29% Similarity=0.484 Sum_probs=130.9
Q ss_pred chhHHHHhCCCeEEE--eCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCC-hhhhcc
Q 029299 2 VPFQALLAFGVSVDA--ACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAM 78 (195)
Q Consensus 2 ~p~~~l~~~G~~v~~--~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~-~~~l~~ 78 (195)
.|++.|+++|+++++ +|++++ ++++++.|.++.++.++++++..+||+||||||.. ...+..
T Consensus 17 ~~~~~l~~a~~~~~~~~~s~~g~---------------~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~~ 81 (179)
T TIGR01383 17 ITVDVLRRAGIKVTVAIVGLNGK---------------LPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLRN 81 (179)
T ss_pred HHHHHHHHCCCEEEEEEeccCCC---------------cceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHhh
Confidence 589999999988886 999764 14778999999999999887667999999999964 444567
Q ss_pred ChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCCH
Q 029299 79 NDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGH 158 (195)
Q Consensus 79 ~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~ 158 (195)
++.+.+||+++++++++|+++|+|+++||++|+|+|+++|+||...+.+.+. .+... ..+++||+++||+|+.++
T Consensus 82 ~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aGlL~g~~~T~~~~~~~~~~~~--~~~~~---~~~v~dg~i~T~~g~~a~ 156 (179)
T TIGR01383 82 SKLLLNILKKQESKGKLVAAICAAPAVLLAAGVLLGKKATCYPGFKEKLLNG--NYSVN---EAVVVDGNIITSRGPGTA 156 (179)
T ss_pred CHHHHHHHHHHHHCCCEEEEEChhHHHHHhcCCCCCCcEEECccHHHhccCC--ceeCC---CCEEEeCCEEECCChhhH
Confidence 8999999999999999999999999999999999999999999877765442 33222 248999999999999999
Q ss_pred HHHHHHHHHHHcCccc
Q 029299 159 PEFIRLFLKALGGTIT 174 (195)
Q Consensus 159 ~~~~l~li~~l~~~~a 174 (195)
++|++++|+++.++..
T Consensus 157 ~d~~l~li~~~~g~~~ 172 (179)
T TIGR01383 157 IEFALALVELLCGKEK 172 (179)
T ss_pred HHHHHHHHHHhcCHHH
Confidence 9999999999887753
No 8
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.97 E-value=1.2e-30 Score=202.14 Aligned_cols=155 Identities=20% Similarity=0.316 Sum_probs=134.9
Q ss_pred chhHHHHhCC-------CeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChh
Q 029299 2 VPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPE 74 (195)
Q Consensus 2 ~p~~~l~~~G-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~ 74 (195)
.|+++|+.++ +++.++|++++ ++++++|.++.+|..+++ ..+||+||||||.+..
T Consensus 16 ~~~d~l~~a~~~~~~~~~~v~~vs~~~~----------------~v~~~~g~~v~~d~~~~~--~~~~D~liipGg~~~~ 77 (187)
T cd03137 16 GPAEVFGEANRALGPPAYELRVCSPEGG----------------PVRSSSGLSLVADAGLDA--LAAADTVIVPGGPDVD 77 (187)
T ss_pred HHHHHHHHHHhhcCCCCeEEEEEeCCCC----------------ceeecCCcEEEcCcCccc--cCCCCEEEECCCcccc
Confidence 4889999987 99999999875 477899999999998874 4689999999998766
Q ss_pred hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHC-CCeeecCCCcceEEEcCCeEeCC
Q 029299 75 YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAA-GASWIEPETMAACVVDGNIITGA 153 (195)
Q Consensus 75 ~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~-g~~~~~~~~~~~~v~Dg~iiT~~ 153 (195)
....++.+.+||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.++++ +...+..+ ..++.||+++||+
T Consensus 78 ~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~--~~~v~dg~i~Ta~ 155 (187)
T cd03137 78 GRPPPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPD--VLYVDDGNVWTSA 155 (187)
T ss_pred cccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHccCcCCCceeehHhhHHHHHHHCCCCEEecC--CEEEecCCEEEcc
Confidence 56689999999999999999999999999999999999999999999999999884 54444332 1488999999999
Q ss_pred CCCCHHHHHHHHHHHHcCcc-ccc
Q 029299 154 TYEGHPEFIRLFLKALGGTI-TGS 176 (195)
Q Consensus 154 g~~~~~~~~l~li~~l~~~~-a~~ 176 (195)
|+.++++|++++|+++.++. +.+
T Consensus 156 g~~~~~d~~l~li~~~~g~~~a~~ 179 (187)
T cd03137 156 GVTAGIDLCLHLVREDLGAAVANR 179 (187)
T ss_pred cHHHHHHHHHHHHHHHhCHHHHHH
Confidence 99999999999999877765 444
No 9
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=99.97 E-value=1e-30 Score=207.98 Aligned_cols=169 Identities=28% Similarity=0.514 Sum_probs=133.9
Q ss_pred CchhHHHHhCCCeEEEeCCCCCCCCCCCccccC--CCCcccc--ccccCcceeeccCCCCCCCCCcCEEEEcCCCCh-hh
Q 029299 1 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQ--STGHQTY--SETRGHNFALNATFDEIDPTKYDGLVIPGGRAP-EY 75 (195)
Q Consensus 1 ~~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~--~~~~~~v--~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~~ 75 (195)
+.||++|+++|++|+++||.+++.....++... ....... ..+.+.++.++.++++++..+||+|+||||+++ ..
T Consensus 26 ~~p~~~l~~aG~~V~~as~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~ipGG~~~~~~ 105 (221)
T cd03141 26 AHPYDVFTEAGYEVDFASPKGGKVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIFIPGGHGPMFD 105 (221)
T ss_pred HHHHHHHHHCCCeEEEECCCCCCCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEEECCCcccccc
Confidence 369999999999999999988652211111110 0000000 124567889999999998889999999999875 34
Q ss_pred hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCC------CCCCceEecCCCch---------------HHHHHCCCee
Q 029299 76 LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------VVKGRKCTAYPPVK---------------PVLIAAGASW 134 (195)
Q Consensus 76 l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aG------lL~g~~~T~~~~~~---------------~~l~~~g~~~ 134 (195)
+..++.+.+||+++++++|+|++||+|+++|+++| +|+||++|+||... +.+++.|+.|
T Consensus 106 l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 185 (221)
T cd03141 106 LPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLEDELKELGANY 185 (221)
T ss_pred cccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCHHHHHHHcCCEe
Confidence 67899999999999999999999999999999999 79999999998754 3467778888
Q ss_pred ecCCC-cceEEEcCCeEeCCCCCCHHHHHHHHHHHH
Q 029299 135 IEPET-MAACVVDGNIITGATYEGHPEFIRLFLKAL 169 (195)
Q Consensus 135 ~~~~~-~~~~v~Dg~iiT~~g~~~~~~~~l~li~~l 169 (195)
.+..+ +..+|+|+|+||++|+.++.+|++++|+.|
T Consensus 186 ~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l 221 (221)
T cd03141 186 VKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL 221 (221)
T ss_pred ecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence 87431 235999999999999999999999999864
No 10
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=99.97 E-value=4.3e-30 Score=205.44 Aligned_cols=167 Identities=17% Similarity=0.271 Sum_probs=132.3
Q ss_pred CchhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccc---cccCcceeeccCCCCC------CCCCcCEEEEcCCC
Q 029299 1 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYS---ETRGHNFALNATFDEI------DPTKYDGLVIPGGR 71 (195)
Q Consensus 1 ~~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~---~~~g~~i~~~~~~~~~------~~~~~D~livpGG~ 71 (195)
++||++|+++|++|+++||.|++.....++.... .+.+. ...+.++..+.+++++ +..+||+||+|||+
T Consensus 29 ~~p~~~l~~aG~~V~~aS~~g~~~~~d~~s~~~~--~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYDav~iPGG~ 106 (232)
T cd03148 29 LLPLYHLHAAGFDFDVATLSGLPVKFEYWAMPHE--DEAVMPFFEKHKSKLRNPKKLADVVASLNADDSEYAAVFIPGGH 106 (232)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCcCccCccccccc--cHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhhceEEEECCCC
Confidence 3799999999999999999876422222222110 00111 1345567778888876 45799999999998
Q ss_pred Ch-hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCC------CCCceEecCCCchH-------------------
Q 029299 72 AP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADV------VKGRKCTAYPPVKP------------------- 125 (195)
Q Consensus 72 ~~-~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGl------L~g~~~T~~~~~~~------------------- 125 (195)
++ .++..++.+.++++++++++|+|++||||++.|..+++ ++||++|+|+..++
T Consensus 107 g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~~~~~~~~pf~le 186 (232)
T cd03148 107 GALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAARHGGGKNPLEGYSVCVFPDSLDEGANIEIGYMPGHLTWLVG 186 (232)
T ss_pred CChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhccCCCCCeeeCCcEEecCCCHHHHhhhhccccccCcccccHH
Confidence 86 45889999999999999999999999999999999998 99999999877644
Q ss_pred -HHHHCCCeeecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHH
Q 029299 126 -VLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKAL 169 (195)
Q Consensus 126 -~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~~~l~li~~l 169 (195)
.+++.|+.|...+-...+|+||++||++++.|+..++..+++.+
T Consensus 187 ~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~ 231 (232)
T cd03148 187 EELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEM 231 (232)
T ss_pred HHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHh
Confidence 45566888887732247999999999999999999999999865
No 11
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=99.97 E-value=9.1e-30 Score=197.45 Aligned_cols=156 Identities=37% Similarity=0.594 Sum_probs=140.3
Q ss_pred CchhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCC-CChhhhccC
Q 029299 1 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGG-RAPEYLAMN 79 (195)
Q Consensus 1 ~~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG-~~~~~l~~~ 79 (195)
++|.+.|+|.|.+|++++++++. ++.++.|.++.+|..+.|.....||++||||| .|+..|.++
T Consensus 22 ivp~dVLrr~Gi~Vt~ag~~~~~---------------~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~~~ 86 (247)
T KOG2764|consen 22 IVPIDVLRRGGIDVTVAGPNKKE---------------GVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLSEC 86 (247)
T ss_pred EEeHHHHHhcCceEEEecCCCCc---------------ccccccceEecccccchhhccccccEEEecCCchhhhhhhhc
Confidence 46899999999999999998763 56778888899999888776689999999999 788889999
Q ss_pred hHHHHHHHHHHhCCCeEEEecHHHH-HHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCCH
Q 029299 80 DSVIDLVRKFSNSGKTIASICHGQL-ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGH 158 (195)
Q Consensus 80 ~~l~~~l~~~~~~~k~i~aic~G~~-lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~ 158 (195)
+.+.+++++|.+.|++|++||+|+. +|+.-|++.|+++|+|+...+.+.+-+..|++.. ++.|||++|++|+..+
T Consensus 87 ~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~----vv~dG~liTSrGpgT~ 162 (247)
T KOG2764|consen 87 EKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPR----VVKDGNLITSRGPGTA 162 (247)
T ss_pred HHHHHHHHHHHhcCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCC----eEEeCcEEeccCCCch
Confidence 9999999999999999999999994 5566677779999999999999999888888876 9999999999999999
Q ss_pred HHHHHHHHHHHcCcccc
Q 029299 159 PEFIRLFLKALGGTITG 175 (195)
Q Consensus 159 ~~~~l~li~~l~~~~a~ 175 (195)
.+|++.|+|+|.+++..
T Consensus 163 ~eFal~lvEqL~GKeka 179 (247)
T KOG2764|consen 163 FEFALKLVEQLGGKEKA 179 (247)
T ss_pred HHHHHHHHHHhcCchhh
Confidence 99999999999998743
No 12
>PRK04155 chaperone protein HchA; Provisional
Probab=99.97 E-value=5.3e-30 Score=210.09 Aligned_cols=170 Identities=18% Similarity=0.262 Sum_probs=132.0
Q ss_pred CchhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCcccccc---ccCcceeeccCCCCC----C--CCCcCEEEEcCCC
Q 029299 1 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSE---TRGHNFALNATFDEI----D--PTKYDGLVIPGGR 71 (195)
Q Consensus 1 ~~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~---~~g~~i~~~~~~~~~----~--~~~~D~livpGG~ 71 (195)
++||++|+++|++|+++|+.|++.....|+.+.. .+.++. ..+.++..+..++++ . ..+||+||||||+
T Consensus 80 ~~P~~~L~~AG~eVdiAS~~G~~~~~d~~s~~~~--d~~v~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~ 157 (287)
T PRK04155 80 LLPMYHLHKAGFEFDVATLSGNPVKFEYWAMPHE--DEAVMGFYEKYKSKFKQPKKLADVVANLLAPDSDYAAVFIPGGH 157 (287)
T ss_pred HHHHHHHHHCCCEEEEEecCCCcccccccccccc--chhHHHHHHHhhhhccCceeHHHhhhhhcCCcccccEEEECCCC
Confidence 4799999999999999999886643333332110 011111 223344444444333 3 5799999999999
Q ss_pred Ch-hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCC------CCCCceEecCCCc-------------------hH
Q 029299 72 AP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------VVKGRKCTAYPPV-------------------KP 125 (195)
Q Consensus 72 ~~-~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aG------lL~g~~~T~~~~~-------------------~~ 125 (195)
++ ..+..++.+.++|+++++++|+|++||||+++|..++ +++||++|+|+.. .+
T Consensus 158 g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a~~~~g~~ll~GkkvT~fp~~~e~~~~~~~~~~~~~~~~~e~ 237 (287)
T PRK04155 158 GALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAAGVDHGDNPLNGYSICAFPDALDKQTPEIGYMPGHLTWLFGE 237 (287)
T ss_pred chHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcCCcCCCcccCCCEEeeCCCHHHhhccccccccccccchHHH
Confidence 85 5588999999999999999999999999999999999 9999999998865 45
Q ss_pred HHHHCCCeeecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHcCc
Q 029299 126 VLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGT 172 (195)
Q Consensus 126 ~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~~~l~li~~l~~~ 172 (195)
.|++.|+.|++.+....+++|||+||++|+.++.+|++.+++.|..+
T Consensus 238 ~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll~~ 284 (287)
T PRK04155 238 ELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELLAA 284 (287)
T ss_pred HHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHHHH
Confidence 67778999998632235999999999999999999999999977544
No 13
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=99.97 E-value=6.7e-30 Score=197.87 Aligned_cols=158 Identities=17% Similarity=0.229 Sum_probs=134.5
Q ss_pred chhHHHHhCC-------CeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChh
Q 029299 2 VPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPE 74 (195)
Q Consensus 2 ~p~~~l~~~G-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~ 74 (195)
.|++.|..++ |+|+++|++++ ++++++|.++.++..+.+. .+||+||||||.+..
T Consensus 16 ~~~dv~~~a~~~~~~~~~~v~~vs~~~~----------------~v~~~~g~~i~~d~~~~~~--~~~D~liipgg~~~~ 77 (185)
T cd03136 16 SAIEPLRAANRLAGRELYRWRVLSLDGA----------------PVTSSNGLRVAPDAALEDA--PPLDYLFVVGGLGAR 77 (185)
T ss_pred HHHHHHHHHHHhcCCcceEEEEEcCCCC----------------eeecCCCcEEeCCcccccc--CCCCEEEEeCCCCcc
Confidence 4778887664 89999999865 4778899999999988754 689999999998766
Q ss_pred hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHC-C-CeeecCCCcceEEEcCCeEeC
Q 029299 75 YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAA-G-ASWIEPETMAACVVDGNIITG 152 (195)
Q Consensus 75 ~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~-g-~~~~~~~~~~~~v~Dg~iiT~ 152 (195)
+..++.+++||++++++++.|+++|+|+++|+++|+|+|+++|+||...+.+++. + ..+.+. .++.||+++||
T Consensus 78 -~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~----~~v~dg~i~Ta 152 (185)
T cd03136 78 -RAVTPALLAWLRRAARRGVALGGIDTGAFLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRD----LFEIDGDRLTC 152 (185)
T ss_pred -ccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHccccCCCeeEECcccHHHHHHHCCCCccccC----eEEEcCCEEEe
Confidence 6789999999999999999999999999999999999999999999999999874 3 444333 48999999999
Q ss_pred CCCCCHHHHHHHHHHHHcCcc-ccc-ccceee
Q 029299 153 ATYEGHPEFIRLFLKALGGTI-TGS-DKRILF 182 (195)
Q Consensus 153 ~g~~~~~~~~l~li~~l~~~~-a~~-~~~~~~ 182 (195)
+|+.++++|++++|+++.++. +.+ ++.++|
T Consensus 153 ~g~~~~~d~~l~ii~~~~g~~~a~~va~~~~~ 184 (185)
T cd03136 153 AGGTAALDLMLELIARDHGAALAARVAEQFLH 184 (185)
T ss_pred ccHHHHHHHHHHHHHHHhCHHHHHHHHHHHcc
Confidence 999999999999999888876 444 444443
No 14
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.96 E-value=1.3e-29 Score=193.98 Aligned_cols=149 Identities=28% Similarity=0.422 Sum_probs=125.4
Q ss_pred chhHHHHhC-CCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccCh
Q 029299 2 VPFQALLAF-GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND 80 (195)
Q Consensus 2 ~p~~~l~~~-G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~ 80 (195)
.|+++|+++ ++++++++++++ ++++++|..+.++.++++.+..+||+||||||..... ..++
T Consensus 16 ~~~~~l~~~~~~~~~~~s~~~~----------------~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~~~~-~~~~ 78 (170)
T cd03140 16 YLAALLNSYEGFEVRTVSPTGE----------------PVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDSWDN-PEAP 78 (170)
T ss_pred HHHHHhcccCCcEEEEEeCCCC----------------eeEecCCeEEccccchhHCCHhHccEEEEcCCccccc-CCcH
Confidence 689999997 899999999875 4788999999999999987657899999999976543 3678
Q ss_pred HHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCC-chHHHHHC--CCeeecCCCcceEEEcCCeEeCCCCCC
Q 029299 81 SVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPP-VKPVLIAA--GASWIEPETMAACVVDGNIITGATYEG 157 (195)
Q Consensus 81 ~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~-~~~~l~~~--g~~~~~~~~~~~~v~Dg~iiT~~g~~~ 157 (195)
.+.+||+++++++++|+++|+|+++||++|+|+|+++|+||. ..+.++++ +..+.... .+++|||+|||+| .+
T Consensus 79 ~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~---~~v~dg~iiT~~g-~a 154 (170)
T cd03140 79 DLAGLVRQALKQGKPVAAICGATLALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEP---QAVSDGNLITANG-TA 154 (170)
T ss_pred HHHHHHHHHHHcCCEEEEEChHHHHHHHCCCcCCCcccCChHHHHHHhccccCcccccccC---cEEEcCCEEECCC-cC
Confidence 999999999999999999999999999999999999999985 44555442 43333332 4999999999987 56
Q ss_pred HHHHHHHHHHHHcC
Q 029299 158 HPEFIRLFLKALGG 171 (195)
Q Consensus 158 ~~~~~l~li~~l~~ 171 (195)
+.+|++++|+.++.
T Consensus 155 ~~d~al~~i~~l~~ 168 (170)
T cd03140 155 PVEFAAEILRALDV 168 (170)
T ss_pred HHHHHHHHHHHcCC
Confidence 89999999998753
No 15
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=99.96 E-value=4.9e-29 Score=189.87 Aligned_cols=146 Identities=25% Similarity=0.401 Sum_probs=124.3
Q ss_pred chhHHHHhCC-------CeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChh
Q 029299 2 VPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPE 74 (195)
Q Consensus 2 ~p~~~l~~~G-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~ 74 (195)
.|++.|+.++ |++.+++++++ ++.+++|..+.++..+++ ..++|+||||||....
T Consensus 13 ~~~d~l~~a~~~~~~~~~~~~~vs~~~~----------------~v~~s~g~~i~~~~~~~~--~~~~D~lvvpg~~~~~ 74 (166)
T PF13278_consen 13 GPLDVLRAANRLSGEPLFEVRLVSPTGG----------------PVTSSSGLRIQPDGSLDD--APDFDILVVPGGPGFD 74 (166)
T ss_dssp HHHHHHTTCTHHCTTTTEEEEEEESSSC----------------EEEBTTSEEEEESEETCC--CSCCSEEEEE-STTHH
T ss_pred HHHHHHHhchhhcCCCCeEEEEEecCCC----------------eeeecCCeEEEeccChhh--cccCCEEEeCCCCCch
Confidence 4678888888 99999999875 588899999999999998 4799999999999844
Q ss_pred hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHC-CCeeecCCCcceEEEcCCeEeCC
Q 029299 75 YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAA-GASWIEPETMAACVVDGNIITGA 153 (195)
Q Consensus 75 ~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~-g~~~~~~~~~~~~v~Dg~iiT~~ 153 (195)
....++.+++||+++++++++|+++|+|+++||++|+|+|+++|+||...+.++++ +...+..+ ..++.|||++||+
T Consensus 75 ~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~--~~~v~dg~i~Ta~ 152 (166)
T PF13278_consen 75 AAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSD--QLFVDDGNIITAG 152 (166)
T ss_dssp HHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TS--SSEEEETTEEEES
T ss_pred hcccCHHHHHHhhhhhccceEEeeeehHHHHHhhhhccCcccccchHHHHHHHHHhCCCccccCC--CEEEECCCeEEec
Confidence 45678999999999999999999999999999999999999999999999999986 55544322 2599999999999
Q ss_pred CCCCHHHHHHHHHH
Q 029299 154 TYEGHPEFIRLFLK 167 (195)
Q Consensus 154 g~~~~~~~~l~li~ 167 (195)
|+.+++|+++++||
T Consensus 153 g~~~~~dl~l~li~ 166 (166)
T PF13278_consen 153 GPTAAIDLALYLIE 166 (166)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999996
No 16
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.96 E-value=3.7e-29 Score=195.15 Aligned_cols=146 Identities=22% Similarity=0.283 Sum_probs=126.5
Q ss_pred CCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCCh-h--hhccChHHHHHH
Q 029299 10 FGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP-E--YLAMNDSVIDLV 86 (195)
Q Consensus 10 ~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~--~l~~~~~l~~~l 86 (195)
.+|+|+++|++++ ++.+++|.++.+|.++++. ++||+||||||.+. . .+..++.+++||
T Consensus 36 ~~~~v~~vs~~~~----------------~v~s~~g~~i~~d~~~~~~--~~~D~liIpgg~~~~~~~~~~~~~~l~~~l 97 (195)
T cd03138 36 PPFEVRLVSLDGG----------------PVLLAGGILILPDATLADV--PAPDLVIVPGLGGDPDELLLADNPALIAWL 97 (195)
T ss_pred CCeEEEEEcCCCC----------------eeecCCCceeccccccccc--CCCCEEEECCCcCCchhhhhhccHHHHHHH
Confidence 5799999999875 4778899999999988764 68999999998764 3 466789999999
Q ss_pred HHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHC-C-CeeecCCCcceEEEcCCeEeCCCCCCHHHHHHH
Q 029299 87 RKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAA-G-ASWIEPETMAACVVDGNIITGATYEGHPEFIRL 164 (195)
Q Consensus 87 ~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~-g-~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~~~l~ 164 (195)
+++++++++|++||+|+++|+++|+|+|+++|+||...+.+++. + ..+.+.. .++.||+++||+|+.++++|+++
T Consensus 98 ~~~~~~~~~i~aic~G~~~La~agll~g~~~t~~~~~~~~~~~~~p~~~~~~~~---~~v~dg~~~T~~g~~~~~d~al~ 174 (195)
T cd03138 98 RRQHANGATVAAACTGVFLLAEAGLLDGRRATTHWWLAPQFRRRFPKVRLDPDR---VVVTDGNLITAGGAMAWADLALH 174 (195)
T ss_pred HHHHHcCCEEEEecHHHHHHHHccCcCCCeeeehHhhHHHHHHHCCCceeccCc---EEEeCCCEEEcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999874 3 3444323 58999999999999999999999
Q ss_pred HHHHHcCcc-ccc
Q 029299 165 FLKALGGTI-TGS 176 (195)
Q Consensus 165 li~~l~~~~-a~~ 176 (195)
+|+++.++. +++
T Consensus 175 li~~~~G~~~a~~ 187 (195)
T cd03138 175 LIERLAGPELAQL 187 (195)
T ss_pred HHHHHhCHHHHHH
Confidence 999877765 555
No 17
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=99.96 E-value=5.4e-29 Score=186.34 Aligned_cols=141 Identities=39% Similarity=0.724 Sum_probs=124.0
Q ss_pred eEEEeCCCCCCCCCCCccccCCCCccccccccC---cceeeccCCCCCCCCCcCEEEEcCCCC-hhhhccC-hHHHHHHH
Q 029299 13 SVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG---HNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMN-DSVIDLVR 87 (195)
Q Consensus 13 ~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g---~~i~~~~~~~~~~~~~~D~livpGG~~-~~~l~~~-~~l~~~l~ 87 (195)
+|+++++..+ +.++++.| .++.++.++++++..+||+||||||++ +..+..+ +.+.++|+
T Consensus 1 ~V~~vs~~~~---------------~~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~ 65 (147)
T PF01965_consen 1 KVDVVSPGDG---------------KEVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLK 65 (147)
T ss_dssp EEEEEESSSS---------------SEEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHH
T ss_pred CEEEEECCCC---------------CeEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHH
Confidence 5788888654 26888888 999999999999988999999999998 5667645 99999999
Q ss_pred HHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcC-CeEeCCCCCCHHHHHHHHH
Q 029299 88 KFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDG-NIITGATYEGHPEFIRLFL 166 (195)
Q Consensus 88 ~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg-~iiT~~g~~~~~~~~l~li 166 (195)
++++++|+|++||+|+.+|+++|+|+|+++|+|+...+.++..|..|.+... .+++|+ |+||++|+.++.+|++.++
T Consensus 66 ~~~~~~k~iaaIC~g~~~L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~--~~vvD~~nlIT~~~~~~~~~fa~~iv 143 (147)
T PF01965_consen 66 EFYEAGKPIAAICHGPAVLAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDD--PVVVDGGNLITGRGPGSAIEFALAIV 143 (147)
T ss_dssp HHHHTT-EEEEETTCHHHHHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSS--SEEEETTTEEEESSGGGHHHHHHHHH
T ss_pred HHHHcCCeEEecCCCcchhhccCccCCceeecCccHHHHHHHCCCEEEecCC--CeEEECCeEEECCChhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999988889999998431 388999 9999999999999999999
Q ss_pred HHHc
Q 029299 167 KALG 170 (195)
Q Consensus 167 ~~l~ 170 (195)
+.|+
T Consensus 144 e~L~ 147 (147)
T PF01965_consen 144 EALG 147 (147)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9874
No 18
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=99.95 E-value=9.6e-28 Score=187.51 Aligned_cols=171 Identities=21% Similarity=0.384 Sum_probs=137.5
Q ss_pred CchhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCC-hhhhccC
Q 029299 1 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMN 79 (195)
Q Consensus 1 ~~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~-~~~l~~~ 79 (195)
+.|+++|+++|++|+++|+.++. ..+++++.|..+.++.++++++..+||+|+||||.+ ...+..+
T Consensus 19 ~~p~~~l~~ag~~v~~~s~~~~~-------------~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~~~~~~ 85 (196)
T PRK11574 19 VTTIDLLVRGGIKVTTASVASDG-------------NLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAECFRDS 85 (196)
T ss_pred hHHHHHHHHCCCeEEEEEccCCC-------------CceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhhhhhhC
Confidence 36999999999999999986421 025888999999999999887667899999999974 4445678
Q ss_pred hHHHHHHHHHHhCCCeEEEecHHHHH-HHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcC--CeEeCCCCC
Q 029299 80 DSVIDLVRKFSNSGKTIASICHGQLI-LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDG--NIITGATYE 156 (195)
Q Consensus 80 ~~l~~~l~~~~~~~k~i~aic~G~~l-La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg--~iiT~~g~~ 156 (195)
+.+.+||+++++++++|++||+|+++ |+.+|+++|+++|.++...+.+. ...+.+. .+++|+ |+|||+|+.
T Consensus 86 ~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~~p--~~~~~~~----~~v~d~~~~iiT~~G~~ 159 (196)
T PRK11574 86 PLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDKIP--AEQWQDK----RVVWDARVNLLTSQGPG 159 (196)
T ss_pred HHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHhcc--cCcccCC----CEEEeCCccEEeCCCcc
Confidence 88999999999999999999999985 66799999999998877654332 2344433 367775 999999999
Q ss_pred CHHHHHHHHHHHHcCcc-ccc-ccceeeeccCcccc
Q 029299 157 GHPEFIRLFLKALGGTI-TGS-DKRILFLCGVSFCF 190 (195)
Q Consensus 157 ~~~~~~l~li~~l~~~~-a~~-~~~~~~~~~~~~~~ 190 (195)
+++||++++|+++.+.. +.+ ++.+++..++--||
T Consensus 160 a~~dlal~li~~~~G~~~a~~va~~~~~~~~~~~~~ 195 (196)
T PRK11574 160 TAIDFALKIIDLLVGREKAHEVASQLVMAAGIYNYY 195 (196)
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHhhhccCccccccc
Confidence 99999999999888875 555 66777776665554
No 19
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=99.95 E-value=2.8e-27 Score=195.87 Aligned_cols=139 Identities=18% Similarity=0.300 Sum_probs=120.1
Q ss_pred ccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEe
Q 029299 39 TYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCT 118 (195)
Q Consensus 39 ~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T 118 (195)
+|.+++|+.|.+|..++.. ..+|+++++||.++......+++.+|||+.+++|..+++||+|+++||++|||+|+++|
T Consensus 56 ~V~ss~G~~i~~d~~~~~~--~~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~aGLLdGrrat 133 (328)
T COG4977 56 PVRSSSGLSIAPDGGLEAA--PPIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEAGLLDGRRAT 133 (328)
T ss_pred CcccCCCceEecCCccccc--CcceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHhcccCCCCee
Confidence 5889999999999999986 45999999999887655445889999999999999999999999999999999999999
Q ss_pred cCCCchHHHHH-CCCeeecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHcCc-cccc-ccceee
Q 029299 119 AYPPVKPVLIA-AGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGT-ITGS-DKRILF 182 (195)
Q Consensus 119 ~~~~~~~~l~~-~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~~~~l~li~~l~~~-~a~~-~~~~~~ 182 (195)
+||...+.|++ +|.+.... ..|++||+++||+|+.+++||+++||++..+. .+.+ ++.+++
T Consensus 134 tHW~~~~~f~e~FP~v~~~~---~lfviDg~~~T~aG~~a~iDl~L~lI~~~~G~~~a~~va~~lv~ 197 (328)
T COG4977 134 THWEHAEDFQERFPDVRVTD---RLFVIDGDRITCAGGTAAIDLMLALIRRDFGAALANRVARQLVV 197 (328)
T ss_pred eccccHHHHHHhCCCCCCCC---ceEEecCCEEEcCCchHHHHHHHHHHHHHhCHHHHHHHHHHhhh
Confidence 99999999988 57665333 37999999999999999999999999866655 5666 544444
No 20
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=99.95 E-value=1.8e-26 Score=179.11 Aligned_cols=159 Identities=42% Similarity=0.736 Sum_probs=136.7
Q ss_pred CchhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCcccccccc-CcceeeccCCCCCCCCCcCEEEEcCC-CChhhhcc
Q 029299 1 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR-GHNFALNATFDEIDPTKYDGLVIPGG-RAPEYLAM 78 (195)
Q Consensus 1 ~~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~-g~~i~~~~~~~~~~~~~~D~livpGG-~~~~~l~~ 78 (195)
+.||+.|+++|++++++++.++- +.+.++. +..+.++..+++++..+||+|++||| +++..+..
T Consensus 19 ~~p~~~l~~ag~~v~~~~~~~~~--------------~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~~~~ 84 (188)
T COG0693 19 IVPYDVLRRAGFEVDVASPEGKG--------------KSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEYLRP 84 (188)
T ss_pred hHHHHHHHHCCCeEEEEecCCCc--------------ceeecccCcceEecccccccCCHhHCCEEEECCCccchhhccC
Confidence 47999999999999999998641 1233344 46677778888887789999999999 88877767
Q ss_pred ChHHHHHHHHHHhCCCeEEEecHHHHHHHhCC-CCCCceEecCCCchHHHHH----CCCeeecCCC-cceEEEcCC-eEe
Q 029299 79 NDSVIDLVRKFSNSGKTIASICHGQLILAAAD-VVKGRKCTAYPPVKPVLIA----AGASWIEPET-MAACVVDGN-IIT 151 (195)
Q Consensus 79 ~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aG-lL~g~~~T~~~~~~~~l~~----~g~~~~~~~~-~~~~v~Dg~-iiT 151 (195)
++.++++++++++++|+|++||+|+++|+.+| +++|+++|+++...+.+.. .|+.|++... ...++.||+ ++|
T Consensus 85 ~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd~~~~~~~vv~dg~~lvt 164 (188)
T COG0693 85 DPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGNALVT 164 (188)
T ss_pred cHHHHHHHHHHHHcCCEEEEEChhHHHHhccccccCCceEeecCchHHHHHhHHHhcCceEeccccCcCCEEEECCeEEE
Confidence 79999999999999999999999999999999 9999999999999888877 6899999831 124999999 999
Q ss_pred CCCCCCHHHHHHHHHHHHcCcc
Q 029299 152 GATYEGHPEFIRLFLKALGGTI 173 (195)
Q Consensus 152 ~~g~~~~~~~~l~li~~l~~~~ 173 (195)
+.++.++..++..+++.+....
T Consensus 165 ~~~p~~~~~~~~~~~~~l~~~~ 186 (188)
T COG0693 165 GRNPASAPAFALELLKALGGAE 186 (188)
T ss_pred cCCcccHHHHHHHHHHHHhccc
Confidence 9999999999999999887653
No 21
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=99.95 E-value=6.4e-27 Score=195.77 Aligned_cols=161 Identities=20% Similarity=0.308 Sum_probs=133.1
Q ss_pred chhHHHHhC-------CCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChh
Q 029299 2 VPFQALLAF-------GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPE 74 (195)
Q Consensus 2 ~p~~~l~~~-------G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~ 74 (195)
.|++.|..+ .|+|+++|++++ +|++++|..+.+|..+++. ++||+||||||.+..
T Consensus 27 ~~~dvl~~a~~~~~~~~~~v~~vs~~~~----------------~v~ss~g~~i~~d~~~~~~--~~~D~livpGg~~~~ 88 (322)
T PRK09393 27 CAVEIFGLPRPELGVDWYRFAVAAVEPG----------------PLRAAGGITVVADGGLELL--DRADTIVIPGWRGPD 88 (322)
T ss_pred HHHHHHHHHHhhcCCCceEEEEEECCCC----------------ceEeCCCcEEeCCCCcccc--CCCCEEEECCCCccc
Confidence 356666432 268999999765 4888999999999999864 689999999997654
Q ss_pred hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHH-CCCeeecCCCcceEEEcCCeEeCC
Q 029299 75 YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWIEPETMAACVVDGNIITGA 153 (195)
Q Consensus 75 ~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~-~g~~~~~~~~~~~~v~Dg~iiT~~ 153 (195)
. ..++.+.+||+++++++++|++||+|+++||++|||+|+++|+||...+.+++ +|...+..+ ..++.|||++||+
T Consensus 89 ~-~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~Tth~~~~~~~~~~~p~~~~~~~--~~~v~~g~iiT~~ 165 (322)
T PRK09393 89 A-PVPEPLLEALRAAHARGARLCSICSGVFVLAAAGLLDGRRATTHWRYAERLQARYPAIRVDPD--VLYVDEGQILTSA 165 (322)
T ss_pred c-cCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhccCCCCCeeeecHhhHHHHHHHCCCCEEeCC--ceEEecCCEEecc
Confidence 3 45889999999999999999999999999999999999999999999999987 465555443 2588999999999
Q ss_pred CCCCHHHHHHHHHHHHcCcc-ccc-ccceeee
Q 029299 154 TYEGHPEFIRLFLKALGGTI-TGS-DKRILFL 183 (195)
Q Consensus 154 g~~~~~~~~l~li~~l~~~~-a~~-~~~~~~~ 183 (195)
|+.+++++++++|++..+.. +.. +..+++.
T Consensus 166 G~~a~~d~~l~li~~~~g~~~a~~va~~ll~~ 197 (322)
T PRK09393 166 GSAAGIDLCLHLVRRDFGSEAANRVARRLVVP 197 (322)
T ss_pred cHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcC
Confidence 99999999999999877765 444 4455543
No 22
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=99.93 E-value=4.6e-25 Score=173.83 Aligned_cols=158 Identities=24% Similarity=0.351 Sum_probs=118.8
Q ss_pred CchhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeec-------cCCCCCCCCCcCEEEEcCCCCh
Q 029299 1 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALN-------ATFDEIDPTKYDGLVIPGGRAP 73 (195)
Q Consensus 1 ~~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~-------~~~~~~~~~~~D~livpGG~~~ 73 (195)
++||++|+++|++|+++||.+++..... ...+ ..+..+.+..+..+ .++++++..+||+||+|||+++
T Consensus 20 ~~p~~~L~raG~~V~~aS~~gg~~~~d~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~ 94 (213)
T cd03133 20 VLTLLALDRAGAEVQCFAPDIEQMHVVN----HLTG-EAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGA 94 (213)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCccCccc----cccc-cccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCch
Confidence 4799999999999999999775422110 1111 12334445555444 6788888889999999999864
Q ss_pred -hhh----------ccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCC--CchHHHHHCCCeeecCCCc
Q 029299 74 -EYL----------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYP--PVKPVLIAAGASWIEPETM 140 (195)
Q Consensus 74 -~~l----------~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~--~~~~~l~~~g~~~~~~~~~ 140 (195)
..+ ..++.++++++++++++|+|++||+|+++|++++. +||++|+|+ ...+.+++.|+.|.+.+.+
T Consensus 95 ~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~-kGr~vT~~~~~~~~~~l~~aGa~~~d~~~~ 173 (213)
T cd03133 95 AKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG-EGVEVTIGNDAGTAAAIEKMGAEHVNCPVE 173 (213)
T ss_pred hhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc-cCCeEEccCCHHHHHHHHHCCCEEEeCCCC
Confidence 333 24789999999999999999999999999999766 999999999 7888899999999875322
Q ss_pred ceEEEc--CCeEeCCCC---CCHHHHHHHH
Q 029299 141 AACVVD--GNIITGATY---EGHPEFIRLF 165 (195)
Q Consensus 141 ~~~v~D--g~iiT~~g~---~~~~~~~l~l 165 (195)
.+++| ||+|||+.. .+..+.++.+
T Consensus 174 -~vvvd~dg~lITs~~~~~~~~~~~~~~~~ 202 (213)
T cd03133 174 -EIVVDEKNKVVTTPAYMLADSIHEIADGI 202 (213)
T ss_pred -eEEEECCCCEEeCccccCCCCHHHHHHhH
Confidence 25555 789999985 3445555544
No 23
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=99.93 E-value=5.3e-25 Score=174.26 Aligned_cols=149 Identities=26% Similarity=0.346 Sum_probs=113.8
Q ss_pred CchhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeec-------cCCCCCCCCCcCEEEEcCCCCh
Q 029299 1 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALN-------ATFDEIDPTKYDGLVIPGGRAP 73 (195)
Q Consensus 1 ~~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~-------~~~~~~~~~~~D~livpGG~~~ 73 (195)
++||++|+++|++|+++||.+++..... +..+ ..+.+..+..+..+ .++++++..+||+||+|||+++
T Consensus 23 ~~P~~~L~~aG~~V~~aSp~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~dyDalviPGG~g~ 97 (217)
T PRK11780 23 VLTLLALDRAGAEAVCFAPDIPQLHVIN----HLTG-EEMGETRNVLVESARIARGEIKDLAEADAEDFDALIVPGGFGA 97 (217)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCcccccc----Cccc-cccccccceeeehhhhhccCCCchhHCChhhCCEEEECCCCch
Confidence 4799999999999999999875321100 1111 12333334434332 6788888889999999999874
Q ss_pred -hh----------hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecC--CCchHHHHHCCCeeecCCCc
Q 029299 74 -EY----------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY--PPVKPVLIAAGASWIEPETM 140 (195)
Q Consensus 74 -~~----------l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~--~~~~~~l~~~g~~~~~~~~~ 140 (195)
.+ +..++.+.+++++|+++||+|++||+|+++|+.+.. +||++|++ +.....+++.|+.|++.+.
T Consensus 98 ~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~~-~gr~~T~~~~~~~~~~~~~aGa~~vd~~~- 175 (217)
T PRK11780 98 AKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKILG-AGVKLTIGNDEDTAAAIEKMGGEHVDCPV- 175 (217)
T ss_pred hhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHhc-cCcEEEecCChhhHHHHHHCCCEEEcCCC-
Confidence 22 345899999999999999999999999999998632 89999999 8889999999999998743
Q ss_pred ceEEEc--CCeEeCCCCC
Q 029299 141 AACVVD--GNIITGATYE 156 (195)
Q Consensus 141 ~~~v~D--g~iiT~~g~~ 156 (195)
..+|+| +|+||+....
T Consensus 176 ~~vvvD~~~~lvt~~~~~ 193 (217)
T PRK11780 176 DDIVVDEENKVVTTPAYM 193 (217)
T ss_pred CeEEEECCCCEEeCCccc
Confidence 236777 7899999743
No 24
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=99.79 E-value=1.1e-18 Score=129.56 Aligned_cols=95 Identities=24% Similarity=0.378 Sum_probs=85.1
Q ss_pred chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCCh-hhhccCh
Q 029299 2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP-EYLAMND 80 (195)
Q Consensus 2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~~l~~~~ 80 (195)
.|++.|+.+|++++++|++++ +++++.|.++.++.++++.+..+||+|+||||.+. ..+..++
T Consensus 19 ~~~~~~~~a~~~v~vvs~~~~----------------~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~~~ 82 (142)
T cd03132 19 ALKAALKAAGANVKVVAPTLG----------------GVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAPSG 82 (142)
T ss_pred HHHHHHHHCCCEEEEEecCcC----------------ceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHccCh
Confidence 589999999999999999875 47788999999999999876668999999999865 3346789
Q ss_pred HHHHHHHHHHhCCCeEEEecHHHHHHHhCCCC
Q 029299 81 SVIDLVRKFSNSGKTIASICHGQLILAAADVV 112 (195)
Q Consensus 81 ~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL 112 (195)
.+.+||+++++++|+|+++|+|+++|+++|+|
T Consensus 83 ~l~~~l~~~~~~~~~I~aic~G~~~La~aGll 114 (142)
T cd03132 83 RALHFVTEAFKHGKPIGAVGEGSDLLEAAGIP 114 (142)
T ss_pred HHHHHHHHHHhcCCeEEEcCchHHHHHHcCCC
Confidence 99999999999999999999999999999986
No 25
>PRK11249 katE hydroperoxidase II; Provisional
Probab=99.48 E-value=1.4e-13 Score=124.86 Aligned_cols=96 Identities=23% Similarity=0.263 Sum_probs=86.8
Q ss_pred chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCC-ChhhhccCh
Q 029299 2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGR-APEYLAMND 80 (195)
Q Consensus 2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~-~~~~l~~~~ 80 (195)
.|++.|.++|++|+++++.++ +|+++.|..+.++.++++++...||+|+||||. ++..+..++
T Consensus 615 ~~~daL~~AGa~V~VVSp~~G----------------~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~~d~ 678 (752)
T PRK11249 615 AILKALKAKGVHAKLLYPRMG----------------EVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLADNG 678 (752)
T ss_pred HHHHHHHHCCCEEEEEECCCC----------------eEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHhhCH
Confidence 478999999999999999875 477889999999999999876789999999996 566677899
Q ss_pred HHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCC
Q 029299 81 SVIDLVRKFSNSGKTIASICHGQLILAAADVVK 113 (195)
Q Consensus 81 ~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~ 113 (195)
.+++||+++++++|+|+++|+|+.+|+++||.+
T Consensus 679 ~al~fL~eaykHgK~IAAiCaG~~LLaaAGL~~ 711 (752)
T PRK11249 679 DARYYLLEAYKHLKPIALAGDARKLKAALKLPD 711 (752)
T ss_pred HHHHHHHHHHHcCCEEEEeCccHHHHHhcCCCC
Confidence 999999999999999999999999999999854
No 26
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.30 E-value=1.3e-11 Score=99.26 Aligned_cols=114 Identities=20% Similarity=0.336 Sum_probs=77.3
Q ss_pred hHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCCh-hhhc-----
Q 029299 4 FQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP-EYLA----- 77 (195)
Q Consensus 4 ~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~~l~----- 77 (195)
++.|+++|+++.+++.... +. . ..+..+||+||+|||... +.+.
T Consensus 16 ~~al~~aG~~v~~v~~~~~-----------------~~----------~---~~~l~~~d~liipGG~~~~d~l~~~~~~ 65 (238)
T cd01740 16 AYAFELAGFEAEDVWHNDL-----------------LA----------G---RKDLDDYDGVVLPGGFSYGDYLRAGAIA 65 (238)
T ss_pred HHHHHHcCCCEEEEeccCC-----------------cc----------c---cCCHhhCCEEEECCCCCccccccccccc
Confidence 5678889999998876421 00 0 112367999999999642 2221
Q ss_pred cChH-HHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCC
Q 029299 78 MNDS-VIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 153 (195)
Q Consensus 78 ~~~~-l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~ 153 (195)
.... +.++|+++.++++++++||+|.++|+++|+|.|+. +.++......+..+ .|++. .++.+++++|+.
T Consensus 66 ~~~~~~~~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~-~~~~~~~~~~~~~~-~~v~~----~v~~~~si~t~~ 136 (238)
T cd01740 66 AASPLLMEEVKEFAERGGLVLGICNGFQILVELGLLPGAL-IRNKGLKFICRWQN-RFVTL----RVENNDSPFTKG 136 (238)
T ss_pred ccChhHHHHHHHHHhCCCeEEEECcHHHHHHHcCCCcccc-ccCCCCceeccccC-ceEEE----EEcCCCCceecC
Confidence 1223 88999999999999999999999999999999976 55554332221111 23333 256677888876
No 27
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.23 E-value=6.4e-11 Score=88.02 Aligned_cols=155 Identities=17% Similarity=0.226 Sum_probs=106.5
Q ss_pred hhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCc------cccccccCcceeeccCCCCCCCCCcCEEEEcCCCCh-hh
Q 029299 3 PFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGH------QTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP-EY 75 (195)
Q Consensus 3 p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~------~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~~ 75 (195)
.+..+.+.|.++.++.|+..+.+.. ++.++. +...++..+.----.+++..++++||+||+|||+|+ ++
T Consensus 25 tllai~r~GA~~~cFAP~~~Q~hVi----NHlTGE~m~EtRNVLvEsARIaRG~i~~l~~a~~e~~DALivPGGFGAAKN 100 (217)
T COG3155 25 TLLAISRSGAQAVCFAPDKQQVHVI----NHLTGEAMPETRNVLVESARIARGEIRPLAQADAEELDALIVPGGFGAAKN 100 (217)
T ss_pred HHHHHHhcCceeEEecCCchhhhhh----hhccccccchhhhHHHHHHHHhhccccchhhcCHHhcceeeccCccchhhh
Confidence 4678899999999999998664432 222221 111222222222334566667789999999999985 33
Q ss_pred h----------ccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC-CCCCCceEec--CCCchHHHHHCCCeeecCCCcce
Q 029299 76 L----------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-DVVKGRKCTA--YPPVKPVLIAAGASWIEPETMAA 142 (195)
Q Consensus 76 l----------~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a-GlL~g~~~T~--~~~~~~~l~~~g~~~~~~~~~~~ 142 (195)
+ .-++++..+.+.+++.|||++-+|.++.+|.+- | .+.+.|. .....+.+++.|+.++..+++..
T Consensus 101 LsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g--~~~~~TIGnD~dTa~a~~~mG~eHv~cPvd~i 178 (217)
T COG3155 101 LSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFG--FPLRLTIGNDIDTAEALEEMGAEHVPCPVDDI 178 (217)
T ss_pred hHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcC--CceeEEecCCccHHHHHHHhCcccCCCCccce
Confidence 2 246899999999999999999999999999874 3 2345554 56678889999999999886544
Q ss_pred EEE-cCCeEeCCCCCCHHHHHHHHHH
Q 029299 143 CVV-DGNIITGATYEGHPEFIRLFLK 167 (195)
Q Consensus 143 ~v~-Dg~iiT~~g~~~~~~~~l~li~ 167 (195)
++. +++++|+. +.-++..+-+
T Consensus 179 V~D~~~KvvtTP----AYMLA~~Iae 200 (217)
T COG3155 179 VVDEDNKVVTTP----AYMLAQNIAE 200 (217)
T ss_pred eecCCCceecCh----HHHHHHHHHH
Confidence 443 36788864 3334444444
No 28
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.11 E-value=5.5e-10 Score=88.82 Aligned_cols=57 Identities=30% Similarity=0.564 Sum_probs=48.4
Q ss_pred CCCcCEEEEcCCCChh------hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCc
Q 029299 59 PTKYDGLVIPGGRAPE------YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR 115 (195)
Q Consensus 59 ~~~~D~livpGG~~~~------~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~ 115 (195)
.++||+|+||||.... .....+.+.+||++++++++++++||+|+++|+++|||+|+
T Consensus 39 l~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~ 101 (219)
T PRK03619 39 LDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGA 101 (219)
T ss_pred CCCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCe
Confidence 3579999999996531 12345778999999999999999999999999999999985
No 29
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.08 E-value=4.5e-10 Score=91.42 Aligned_cols=83 Identities=24% Similarity=0.430 Sum_probs=59.9
Q ss_pred hhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCCh-hhhccC--
Q 029299 3 PFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP-EYLAMN-- 79 (195)
Q Consensus 3 p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~-~~l~~~-- 79 (195)
+++.|+++|+++++++.... .+. ..+.++||+|+||||.+. +.+...
T Consensus 20 ~~~Al~~aG~~v~~v~~~~~---------------------------~~~---~~~l~~~DgLvipGGfs~gD~l~~g~~ 69 (261)
T PRK01175 20 TVKAFRRLGVEPEYVHINDL---------------------------AAE---RKSVSDYDCLVIPGGFSAGDYIRAGAI 69 (261)
T ss_pred HHHHHHHCCCcEEEEeeccc---------------------------ccc---ccchhhCCEEEECCCCCcccccccchh
Confidence 46778888888888876410 000 012367999999999643 222111
Q ss_pred ------hHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCc
Q 029299 80 ------DSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR 115 (195)
Q Consensus 80 ------~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~ 115 (195)
+.+.+.|+++.+++|++.+||+|.++|+++|+|.|.
T Consensus 70 ~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLpg~ 111 (261)
T PRK01175 70 FAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLPGF 111 (261)
T ss_pred hHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCCCC
Confidence 234588999999999999999999999999999983
No 30
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=98.93 E-value=8e-09 Score=82.61 Aligned_cols=56 Identities=34% Similarity=0.697 Sum_probs=47.0
Q ss_pred CCcCEEEEcCCCCh-h-----hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCc
Q 029299 60 TKYDGLVIPGGRAP-E-----YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR 115 (195)
Q Consensus 60 ~~~D~livpGG~~~-~-----~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~ 115 (195)
+++|+||+|||... + .+.....+.++|+++.+++++|.+||+|.++|+++|+|.|.
T Consensus 39 ~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~ 100 (227)
T TIGR01737 39 PDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGA 100 (227)
T ss_pred CCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCc
Confidence 57999999999642 1 12235668899999999999999999999999999999884
No 31
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=98.89 E-value=4.8e-09 Score=82.38 Aligned_cols=54 Identities=41% Similarity=0.732 Sum_probs=46.7
Q ss_pred CcCEEEEcCCCChhh-h-----ccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCC
Q 029299 61 KYDGLVIPGGRAPEY-L-----AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKG 114 (195)
Q Consensus 61 ~~D~livpGG~~~~~-l-----~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g 114 (195)
+||+|++|||+..-+ + ..-..+.+-+++++++|+++.+||+|-++|.++|||.|
T Consensus 43 ~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPG 102 (231)
T COG0047 43 DFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILSEAGLLPG 102 (231)
T ss_pred CccEEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHHHcCcCCc
Confidence 799999999975422 2 23367889999999999999999999999999999999
No 32
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.79 E-value=2.8e-08 Score=77.83 Aligned_cols=73 Identities=32% Similarity=0.452 Sum_probs=57.9
Q ss_pred hHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCCh---hhhccCh
Q 029299 4 FQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP---EYLAMND 80 (195)
Q Consensus 4 ~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~---~~l~~~~ 80 (195)
++.|+++|++|.++++..+ ++ ..++|+||+|||... ..+..+.
T Consensus 17 ~~~l~~~G~~v~~~s~~~~--------------------------------~~--l~~~D~lilPGG~~~~~~~~L~~~~ 62 (198)
T cd03130 17 LELLEAAGAELVPFSPLKD--------------------------------EE--LPDADGLYLGGGYPELFAEELSANQ 62 (198)
T ss_pred HHHHHHCCCEEEEECCCCC--------------------------------CC--CCCCCEEEECCCchHHHHHHHHhhH
Confidence 4678889999999887421 01 234999999998642 4565667
Q ss_pred HHHHHHHHHHhCCCeEEEecHHHHHHHhCC
Q 029299 81 SVIDLVRKFSNSGKTIASICHGQLILAAAD 110 (195)
Q Consensus 81 ~l~~~l~~~~~~~k~i~aic~G~~lLa~aG 110 (195)
.+.+.|+++.++|++|.+||.|.++|++..
T Consensus 63 ~~~~~i~~~~~~g~pilgICgG~qlL~~~~ 92 (198)
T cd03130 63 SMRESIRAFAESGGPIYAECGGLMYLGESL 92 (198)
T ss_pred HHHHHHHHHHHcCCCEEEEcccHHHHHHHh
Confidence 899999999999999999999999999864
No 33
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=98.74 E-value=2.6e-08 Score=77.16 Aligned_cols=50 Identities=32% Similarity=0.590 Sum_probs=42.6
Q ss_pred CCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
++||+||||||.+.. .+..+..+.+.|+++.++++++.+||.|..+|++.
T Consensus 35 ~~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~ 86 (184)
T TIGR03800 35 DEIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKE 86 (184)
T ss_pred ccCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHHHHHHhh
Confidence 479999999997542 34455678899999999999999999999999988
No 34
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.71 E-value=2.7e-08 Score=76.36 Aligned_cols=54 Identities=28% Similarity=0.537 Sum_probs=44.3
Q ss_pred CCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHh----CCCCCC
Q 029299 60 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA----ADVVKG 114 (195)
Q Consensus 60 ~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~----aGlL~g 114 (195)
.+||.||+|||.+.. .+..+..+.+.|+++.+ +|++++||.|+.+|++ .|++++
T Consensus 38 ~~~D~LILPGG~~t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~~s~~Lg~idg 97 (179)
T PRK13526 38 DSIDRLVIPGGESTTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAGSIILSKGEGYLNLLDL 97 (179)
T ss_pred hCCCEEEECCChHHHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHccCCCCCCccE
Confidence 579999999997654 45566779999999885 7899999999999999 355554
No 35
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.63 E-value=4e-08 Score=79.88 Aligned_cols=57 Identities=35% Similarity=0.648 Sum_probs=43.9
Q ss_pred CCCcCEEEEcCCCChh-----------hhccChHHHHHHHHHHhC-CCeEEEecHHHHHHHhCCCCCCc
Q 029299 59 PTKYDGLVIPGGRAPE-----------YLAMNDSVIDLVRKFSNS-GKTIASICHGQLILAAADVVKGR 115 (195)
Q Consensus 59 ~~~~D~livpGG~~~~-----------~l~~~~~l~~~l~~~~~~-~k~i~aic~G~~lLa~aGlL~g~ 115 (195)
..+||+|++|||++.. .+..++.+.+.|++|.++ ++++.+||+|.++|.++|||.+.
T Consensus 44 l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~~ 112 (259)
T PF13507_consen 44 LDDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILVELGLLPGG 112 (259)
T ss_dssp GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHCCCCCSTT-
T ss_pred hhhCcEEEECCccCccccchHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHHHhCcCCCc
Confidence 4689999999997531 123356778999999999 99999999999999999999984
No 36
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.61 E-value=3.3e-07 Score=62.73 Aligned_cols=76 Identities=34% Similarity=0.664 Sum_probs=60.6
Q ss_pred chhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhh-hccCh
Q 029299 2 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEY-LAMND 80 (195)
Q Consensus 2 ~p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~-l~~~~ 80 (195)
.+++.|+++++++++++..+.+ ... .....+||+|++|||..... ...+.
T Consensus 16 ~~~~~l~~~~~~~~~~~~~~~~----------------~~~-------------~~~~~~~d~lii~g~~~~~~~~~~~~ 66 (115)
T cd01653 16 SPLDALREAGAEVDVVSPDGGP----------------VES-------------DVDLDDYDGLILPGGPGTPDDLARDE 66 (115)
T ss_pred HHHHHHHHCCCeEEEEcCCCCc----------------eec-------------cCChhccCEEEECCCCCchhhhccCH
Confidence 3678899999999999998643 111 12246899999999876432 22478
Q ss_pred HHHHHHHHHHhCCCeEEEecHHHHHH
Q 029299 81 SVIDLVRKFSNSGKTIASICHGQLIL 106 (195)
Q Consensus 81 ~l~~~l~~~~~~~k~i~aic~G~~lL 106 (195)
.++++++++.+++++++++|.|++++
T Consensus 67 ~~~~~i~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 67 ALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred HHHHHHHHHHHcCCEEEEECchhHhH
Confidence 99999999999999999999999998
No 37
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.49 E-value=4.5e-07 Score=70.56 Aligned_cols=50 Identities=30% Similarity=0.627 Sum_probs=41.7
Q ss_pred CCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
++||+||+|||.... .+..+..+.++|+++.++++|+.+||.|.++|+.+
T Consensus 37 ~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~ 88 (189)
T PRK13525 37 DEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKE 88 (189)
T ss_pred ccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence 579999999997532 23345567899999999999999999999999984
No 38
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.42 E-value=5.9e-07 Score=70.39 Aligned_cols=50 Identities=28% Similarity=0.584 Sum_probs=42.2
Q ss_pred CCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.+||+||+|||++.. .+..+..+.++|+++.++++|+.+||.|.++|+++
T Consensus 42 ~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~ 93 (200)
T PRK13527 42 PDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKE 93 (200)
T ss_pred ccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence 579999999997532 23345568999999999999999999999999987
No 39
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.42 E-value=9.3e-07 Score=69.03 Aligned_cols=51 Identities=20% Similarity=0.466 Sum_probs=41.7
Q ss_pred CCcCEEEEcCCCCh-hhhcc--ChHHHHHHHHHHhCCCeEEEecHHHHHHHhCC
Q 029299 60 TKYDGLVIPGGRAP-EYLAM--NDSVIDLVRKFSNSGKTIASICHGQLILAAAD 110 (195)
Q Consensus 60 ~~~D~livpGG~~~-~~l~~--~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aG 110 (195)
.++|+||+|||... ..+.. +..+.+.|+++.++++||.+||.|.++|++.-
T Consensus 36 ~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~ 89 (194)
T cd01750 36 GDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI 89 (194)
T ss_pred CCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhc
Confidence 57899999999743 22222 45688999999999999999999999999874
No 40
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.40 E-value=2e-06 Score=56.21 Aligned_cols=74 Identities=32% Similarity=0.669 Sum_probs=57.0
Q ss_pred hhHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhh-hccChH
Q 029299 3 PFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEY-LAMNDS 81 (195)
Q Consensus 3 p~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~-l~~~~~ 81 (195)
+++.+++.+++++++++...+.. . .....++|+||+|||..... ...+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~----------------~-------------~~~~~~~~~lii~g~~~~~~~~~~~~~ 67 (92)
T cd03128 17 PLDALREAGAEVDVVSPDGGPVE----------------S-------------DVDLDDYDGLILPGGPGTPDDLAWDEA 67 (92)
T ss_pred HHHHHHhCCCEEEEEeCCCCccc----------------c-------------cCCcccCCEEEECCCCcchhhhccCHH
Confidence 56788889999999998754200 0 12346899999999976432 224689
Q ss_pred HHHHHHHHHhCCCeEEEecHHHHH
Q 029299 82 VIDLVRKFSNSGKTIASICHGQLI 105 (195)
Q Consensus 82 l~~~l~~~~~~~k~i~aic~G~~l 105 (195)
+.++++++.+++++++++|.|+++
T Consensus 68 ~~~~~~~~~~~~~~i~~~~~g~~~ 91 (92)
T cd03128 68 LLALLREAAAAGKPVLGICLGAQL 91 (92)
T ss_pred HHHHHHHHHHcCCEEEEEeccccc
Confidence 999999999999999999999875
No 41
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.34 E-value=1.3e-06 Score=68.52 Aligned_cols=50 Identities=28% Similarity=0.432 Sum_probs=41.1
Q ss_pred CCcCEEEEcCCCCh-hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~-~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.+||+|++|||... ..+...+.+.++|+++.++++|+.+||.|.++|+++
T Consensus 37 ~~~d~iii~G~~~~~~~~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~ 87 (200)
T PRK13143 37 LDADGIVLPGVGAFGAAMENLSPLRDVILEAARSGKPFLGICLGMQLLFES 87 (200)
T ss_pred ccCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence 47999999996433 223445678899999999999999999999999985
No 42
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.33 E-value=2.4e-06 Score=74.88 Aligned_cols=51 Identities=31% Similarity=0.464 Sum_probs=44.3
Q ss_pred CCCcCEEEEcCCCC---hhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 59 PTKYDGLVIPGGRA---PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 59 ~~~~D~livpGG~~---~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.+++|+|++|||.. ...+..+..+.+.|+++.++|++|.++|.|.++|++.
T Consensus 285 l~~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~ 338 (451)
T PRK01077 285 LPDCDGLYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGES 338 (451)
T ss_pred CCCCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence 45899999999963 3446677889999999999999999999999999886
No 43
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=98.33 E-value=1.9e-06 Score=66.30 Aligned_cols=48 Identities=33% Similarity=0.488 Sum_probs=40.4
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.+||+||++||++.. .+.....++++++.++++|+.+||.|.++|+.+
T Consensus 38 ~~~dgiil~GG~~~~--~~~~~~~~~~~~~~~~~~PvlGIC~G~Q~l~~~ 85 (178)
T cd01744 38 LDPDGIFLSNGPGDP--ALLDEAIKTVRKLLGKKIPIFGICLGHQLLALA 85 (178)
T ss_pred cCCCEEEECCCCCCh--hHhHHHHHHHHHHHhCCCCEEEECHHHHHHHHH
Confidence 479999999997532 124678889999999999999999999999985
No 44
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=98.24 E-value=3.1e-06 Score=66.16 Aligned_cols=50 Identities=26% Similarity=0.363 Sum_probs=40.0
Q ss_pred CCcCEEEEcCCCChhh---hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~---l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.+||+||+||+..+.. ......+.++|+++.++++||.+||.|.++|+++
T Consensus 35 ~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~ 87 (198)
T cd01748 35 LSADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLGMQLLFES 87 (198)
T ss_pred ccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHHhccc
Confidence 4699999998644321 1233457899999999999999999999999997
No 45
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=98.22 E-value=3.3e-06 Score=65.28 Aligned_cols=50 Identities=34% Similarity=0.673 Sum_probs=41.2
Q ss_pred CCcCEEEEcCCCCh--hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~--~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++|.||+|||... .....+..+.++|+++.++++|+.++|.|..+|+++
T Consensus 34 ~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~qlL~~~ 85 (183)
T cd01749 34 EGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLILLAKE 85 (183)
T ss_pred ccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence 57999999998642 223345567899999999999999999999999986
No 46
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.16 E-value=3.8e-06 Score=66.03 Aligned_cols=50 Identities=24% Similarity=0.456 Sum_probs=39.4
Q ss_pred CCcCEEEEcCCCCh-hhh--ccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAP-EYL--AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~-~~l--~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.+||.|||||+... ..+ ...+.+.++|+++.++++|+.+||.|.++|++.
T Consensus 36 ~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~ 88 (205)
T PRK13141 36 LAADGVILPGVGAFPDAMANLRERGLDEVIKEAVASGKPLLGICLGMQLLFES 88 (205)
T ss_pred ccCCEEEECCCCchHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHHhhhc
Confidence 47999999996432 211 123357899999999999999999999999986
No 47
>PRK07053 glutamine amidotransferase; Provisional
Probab=98.15 E-value=1.2e-05 Score=64.52 Aligned_cols=50 Identities=28% Similarity=0.329 Sum_probs=40.9
Q ss_pred CCcCEEEEcCCCC-hhh---hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRA-PEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~-~~~---l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.+||+|||+||+. +.+ ......+.++|+++.+.++|+.+||.|..+|+++
T Consensus 46 ~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a 99 (234)
T PRK07053 46 LEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARA 99 (234)
T ss_pred cCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence 4799999999863 321 1233578899999999999999999999999987
No 48
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=98.12 E-value=6.3e-06 Score=66.55 Aligned_cols=50 Identities=34% Similarity=0.629 Sum_probs=41.5
Q ss_pred CCcCEEEEcCCCCh--hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~--~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++|.||+|||... ..+.....+.+.|+++.++|+|+.++|.|..+|++.
T Consensus 37 ~~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~ 88 (248)
T PLN02832 37 EGVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAGLIFLAER 88 (248)
T ss_pred ccCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence 57899999998753 334444468899999999999999999999999876
No 49
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=98.05 E-value=1.6e-05 Score=61.77 Aligned_cols=47 Identities=15% Similarity=0.340 Sum_probs=38.4
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.+||.|||.||++... ..+.+.++|++ +++++|+.+||-|.++|+.+
T Consensus 42 ~~~d~iIi~gGp~~~~--~~~~~~~~i~~-~~~~~PiLGIClG~Qlla~~ 88 (190)
T PRK06895 42 ENFSHILISPGPDVPR--AYPQLFAMLER-YHQHKSILGVCLGHQTLCEF 88 (190)
T ss_pred ccCCEEEECCCCCChH--HhhHHHHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence 4689999999887432 24567888986 78899999999999999987
No 50
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=98.05 E-value=8.5e-06 Score=61.53 Aligned_cols=52 Identities=27% Similarity=0.473 Sum_probs=44.9
Q ss_pred CCCcCEEEEcCCCCh---hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCC
Q 029299 59 PTKYDGLVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 110 (195)
Q Consensus 59 ~~~~D~livpGG~~~---~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aG 110 (195)
++++|+|++|||+-. ..+..+..+.+.|+++.++|++|.++|.|-++|.+.=
T Consensus 5 ~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i 59 (158)
T PF07685_consen 5 PPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESI 59 (158)
T ss_pred CCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHH
Confidence 578999999999742 3356678899999999999999999999999998864
No 51
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=98.01 E-value=1.5e-05 Score=61.74 Aligned_cols=46 Identities=22% Similarity=0.455 Sum_probs=37.3
Q ss_pred CcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 61 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 61 ~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
++|.||+|||.+... +.....++++..++++|+.+||.|..+|+.+
T Consensus 41 ~~~glii~Gg~~~~~---~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~ 86 (188)
T TIGR00888 41 NPKGIILSGGPSSVY---AENAPRADEKIFELGVPVLGICYGMQLMAKQ 86 (188)
T ss_pred CCCEEEECCCCCCcC---cCCchHHHHHHHhCCCCEEEECHHHHHHHHh
Confidence 467999999976432 2234678899999999999999999999986
No 52
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=98.00 E-value=1.5e-05 Score=76.69 Aligned_cols=57 Identities=23% Similarity=0.288 Sum_probs=48.5
Q ss_pred CCCcCEEEEcCCCChh-----------hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCc
Q 029299 59 PTKYDGLVIPGGRAPE-----------YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR 115 (195)
Q Consensus 59 ~~~~D~livpGG~~~~-----------~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~ 115 (195)
..+|++|++|||++.. ....++.+.+-+++|+++++++.+||+|-++|.+.|||.+.
T Consensus 1029 l~~~~~l~~pGGFSyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~ 1096 (1239)
T TIGR01857 1029 IDKSQILMLPGGFSAGDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYG 1096 (1239)
T ss_pred cccCcEEEEcCccCcccccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCc
Confidence 4689999999997531 23456789999999999999999999999999999999864
No 53
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.98 E-value=2.8e-05 Score=68.18 Aligned_cols=65 Identities=22% Similarity=0.395 Sum_probs=49.0
Q ss_pred CcceeeccCCCCCCCCCcCEEEEcCCCC---hhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 45 GHNFALNATFDEIDPTKYDGLVIPGGRA---PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 45 g~~i~~~~~~~~~~~~~~D~livpGG~~---~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
|..+..-.++.+-+.+++|+|++|||.. ...+..+..+.+.|+++.++|++|.++|.|.++|++.
T Consensus 270 g~~~~~~~~~~d~~l~~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~ 337 (449)
T TIGR00379 270 AAELVPFSPLEDTELPDVDAVYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQS 337 (449)
T ss_pred CCEEEEECCccCCCCCCCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence 4444443333222335899999999974 2335567789999999999999999999999999886
No 54
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.94 E-value=3.7e-05 Score=74.59 Aligned_cols=58 Identities=19% Similarity=0.406 Sum_probs=48.7
Q ss_pred CCCcCEEEEcCCCCh-----------hhhccChHHHHHHHHHH-hCCCeEEEecHHHHHHHhCCCCCCce
Q 029299 59 PTKYDGLVIPGGRAP-----------EYLAMNDSVIDLVRKFS-NSGKTIASICHGQLILAAADVVKGRK 116 (195)
Q Consensus 59 ~~~~D~livpGG~~~-----------~~l~~~~~l~~~l~~~~-~~~k~i~aic~G~~lLa~aGlL~g~~ 116 (195)
..+|+.|++|||++. ..+..++.+.+.+++|+ +.++++.+||+|.++|.+.||+.|..
T Consensus 1080 L~~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~lgllPg~~ 1149 (1307)
T PLN03206 1080 LDDFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGPQ 1149 (1307)
T ss_pred ccceeEEEEcCcCCCccccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHcCCCCCCc
Confidence 578999999999742 12456788999999999 55999999999999999999998753
No 55
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=97.94 E-value=1.9e-05 Score=62.42 Aligned_cols=56 Identities=25% Similarity=0.474 Sum_probs=42.0
Q ss_pred CCcCEEEEcCCCChh----hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC---------CCCCCce
Q 029299 60 TKYDGLVIPGGRAPE----YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA---------DVVKGRK 116 (195)
Q Consensus 60 ~~~D~livpGG~~~~----~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a---------GlL~g~~ 116 (195)
.++|.||+||+..+. .+ ....+.+.|+++.++++|+.+||.|..+|++. |+++|+-
T Consensus 38 ~~~d~iIlPG~g~~~~~~~~l-~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v 106 (210)
T CHL00188 38 AQVHALVLPGVGSFDLAMKKL-EKKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQV 106 (210)
T ss_pred hhCCEEEECCCCchHHHHHHH-HHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCcCCccceeEEE
Confidence 468999999953321 22 23346678888999999999999999999985 5677654
No 56
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=97.92 E-value=2.8e-05 Score=66.92 Aligned_cols=73 Identities=26% Similarity=0.450 Sum_probs=60.2
Q ss_pred hHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCC---hhhhccCh
Q 029299 4 FQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRA---PEYLAMND 80 (195)
Q Consensus 4 ~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~---~~~l~~~~ 80 (195)
++.|++.|+++.++||-.+. ++ +++.|+|++|||+- +..|..+.
T Consensus 264 l~~Lr~~GAelv~FSPL~D~--------------------------------~l-P~~~D~vYlgGGYPElfA~~L~~n~ 310 (451)
T COG1797 264 LELLREAGAELVFFSPLADE--------------------------------EL-PPDVDAVYLGGGYPELFAEELSANE 310 (451)
T ss_pred HHHHHHCCCEEEEeCCcCCC--------------------------------CC-CCCCCEEEeCCCChHHHHHHHhhCH
Confidence 46788899999999985321 11 23589999999973 45688899
Q ss_pred HHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 81 SVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 81 ~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.+.+.|+++++.|++|.+-|.|-+.|.+.
T Consensus 311 ~~~~~i~~~~~~G~piyaECGGlMYL~~~ 339 (451)
T COG1797 311 SMRRAIKAFAAAGKPIYAECGGLMYLGES 339 (451)
T ss_pred HHHHHHHHHHHcCCceEEecccceeehhh
Confidence 99999999999999999999999999886
No 57
>PRK06490 glutamine amidotransferase; Provisional
Probab=97.91 E-value=5.9e-05 Score=60.82 Aligned_cols=50 Identities=26% Similarity=0.290 Sum_probs=40.5
Q ss_pred CCcCEEEEcCCCCh-hh-hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAP-EY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~-~~-l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.+||.+||.||+.. .+ ......+.+||+++.++++|+.+||-|..+|+.+
T Consensus 51 ~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~a 102 (239)
T PRK06490 51 EDHAGAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGICLGAQMLARH 102 (239)
T ss_pred cccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence 57999999998753 11 1123457899999999999999999999999987
No 58
>PRK08250 glutamine amidotransferase; Provisional
Probab=97.91 E-value=2.8e-05 Score=62.54 Aligned_cols=50 Identities=20% Similarity=0.404 Sum_probs=40.5
Q ss_pred CCcCEEEEcCCCCh-hh-hccC-----hHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAP-EY-LAMN-----DSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~-~~-l~~~-----~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.+||+|||.||+.. .. .... ....++|+++.++++|+.+||.|..+|+.+
T Consensus 44 ~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a 100 (235)
T PRK08250 44 DGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEA 100 (235)
T ss_pred cccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence 57999999999643 21 1122 366899999999999999999999999987
No 59
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=97.90 E-value=5.1e-05 Score=58.22 Aligned_cols=48 Identities=21% Similarity=0.385 Sum_probs=34.1
Q ss_pred CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
..+||.||+|||.+.......+. +.++..+.++|+.+||.|.++|+.+
T Consensus 39 ~~~~dgvIl~Gg~~~~~~~~~~~---~~~~~~~~~~PilGIC~G~Qll~~~ 86 (181)
T cd01742 39 LKNPKGIILSGGPSSVYEEDAPR---VDPEIFELGVPVLGICYGMQLIAKA 86 (181)
T ss_pred ccCCCEEEECCCcccccccccch---hhHHHHhcCCCEEEEcHHHHHHHHh
Confidence 35799999999975322111223 3344555699999999999999985
No 60
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=97.87 E-value=2.4e-05 Score=60.46 Aligned_cols=51 Identities=35% Similarity=0.561 Sum_probs=41.8
Q ss_pred CCCcCEEEEcCCCChh---hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 59 PTKYDGLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 59 ~~~~D~livpGG~~~~---~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
..+||+||++||.... .....+.+.++|+++.++++++.+||.|..+|+.+
T Consensus 44 ~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~ 97 (188)
T cd01741 44 LDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARA 97 (188)
T ss_pred cccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence 4689999999997532 12223678999999999999999999999999886
No 61
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=97.87 E-value=4.3e-05 Score=74.46 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=48.9
Q ss_pred CCCCcCEEEEcCCCCh-----------hhhccChHHHHHHHHHH-hCCCeEEEecHHHHHHH-hCCCCCCc
Q 029299 58 DPTKYDGLVIPGGRAP-----------EYLAMNDSVIDLVRKFS-NSGKTIASICHGQLILA-AADVVKGR 115 (195)
Q Consensus 58 ~~~~~D~livpGG~~~-----------~~l~~~~~l~~~l~~~~-~~~k~i~aic~G~~lLa-~aGlL~g~ 115 (195)
+.++|++|++|||+.. ..+..++.+.+.+++|+ ++++++.+||+|.++|. +.||+.|.
T Consensus 1097 ~l~~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~ 1167 (1310)
T TIGR01735 1097 HLDEFRGLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGT 1167 (1310)
T ss_pred chhheeEEEEcCCCCCccchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCC
Confidence 4578999999999632 12456788999999999 88999999999999999 99999874
No 62
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=97.86 E-value=3.2e-05 Score=60.04 Aligned_cols=47 Identities=23% Similarity=0.336 Sum_probs=36.4
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.+||.||+-||++... +.....++++. .++++|+.+||-|.++|+.+
T Consensus 42 ~~~d~iils~GPg~p~--~~~~~~~~~~~-~~~~~PiLGIClG~Q~la~a 88 (187)
T PRK08007 42 LKPQKIVISPGPCTPD--EAGISLDVIRH-YAGRLPILGVCLGHQAMAQA 88 (187)
T ss_pred cCCCEEEEcCCCCChH--HCCccHHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence 3689999999987432 23345666766 57889999999999999986
No 63
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=97.83 E-value=5e-05 Score=64.69 Aligned_cols=48 Identities=27% Similarity=0.444 Sum_probs=40.0
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++|.||++||++-.. ..+...++++++.++++|+.+||.|.++|+.+
T Consensus 217 ~~~DGIvLSgGPgdp~--~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a 264 (360)
T PRK12564 217 LNPDGVFLSNGPGDPA--ALDYAIEMIRELLEKKIPIFGICLGHQLLALA 264 (360)
T ss_pred cCCCEEEEeCCCCChH--HHHHHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence 3699999999986321 23677899999999999999999999999876
No 64
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.78 E-value=9.9e-05 Score=72.04 Aligned_cols=56 Identities=20% Similarity=0.401 Sum_probs=46.6
Q ss_pred CCCcCEEEEcCCCCh-----------hhhccChHHHHHHHHHH-hCCCeEEEecHHHHHHHhCC-CCCC
Q 029299 59 PTKYDGLVIPGGRAP-----------EYLAMNDSVIDLVRKFS-NSGKTIASICHGQLILAAAD-VVKG 114 (195)
Q Consensus 59 ~~~~D~livpGG~~~-----------~~l~~~~~l~~~l~~~~-~~~k~i~aic~G~~lLa~aG-lL~g 114 (195)
..+|++|++|||++. ..+..++.+.+.+++|+ ++++++.+||+|.++|.+.| ++.+
T Consensus 1078 l~~~~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~lg~l~p~ 1146 (1290)
T PRK05297 1078 LEDFKGLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNLKEIIPG 1146 (1290)
T ss_pred hhhCcEEEECCccCCcccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHhCCccCC
Confidence 578999999999642 12346788999999977 78999999999999999997 7765
No 65
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=97.78 E-value=7.5e-05 Score=58.33 Aligned_cols=49 Identities=29% Similarity=0.335 Sum_probs=35.9
Q ss_pred CCcCEEEEcCCCChh----hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPE----YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~----~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
+++|.||+||+.... .+.... ...+++++.+.++|+.+||.|.++|+++
T Consensus 35 ~~~d~lii~G~~~~~~~~~~l~~~~-~~~l~~~~~~~~~pvlGiC~G~Qll~~~ 87 (196)
T TIGR01855 35 ELADKLILPGVGAFGAAMARLRENG-LDLFVELVVRLGKPVLGICLGMQLLFER 87 (196)
T ss_pred ccCCEEEECCCCCHHHHHHHHHHcC-cHHHHHHHHhCCCCEEEECHHHHHhhhc
Confidence 469999999853321 122222 3455588889999999999999999998
No 66
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.77 E-value=9.5e-05 Score=64.45 Aligned_cols=50 Identities=26% Similarity=0.466 Sum_probs=40.6
Q ss_pred CCCcCEEEEcCCCC---hhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 59 PTKYDGLVIPGGRA---PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 59 ~~~~D~livpGG~~---~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.+++|+|++|||+- ...+..+... +.|+++.++|++|.++|.|-++|++.
T Consensus 272 lp~~D~l~lpGG~~e~~~~~L~~n~~~-~~i~~~~~~G~pi~aeCGG~q~L~~~ 324 (433)
T PRK13896 272 LPDCDGVYLPGGYPELHADALADSPAL-DELADRAADGLPVLGECGGLMALAES 324 (433)
T ss_pred CCCCCEEEeCCCchhhHHHHHHhCCcH-HHHHHHHHCCCcEEEEehHHHHhhcc
Confidence 34789999999973 2335445445 89999999999999999999999985
No 67
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=97.76 E-value=1.9e-05 Score=60.78 Aligned_cols=60 Identities=30% Similarity=0.512 Sum_probs=43.0
Q ss_pred CCcCEEEEcCCCCh--hhhccChHHHHHHHHHHhCC-CeEEEecHHHHHHHhC------CCCCCceEec
Q 029299 60 TKYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAAA------DVVKGRKCTA 119 (195)
Q Consensus 60 ~~~D~livpGG~~~--~~l~~~~~l~~~l~~~~~~~-k~i~aic~G~~lLa~a------GlL~g~~~T~ 119 (195)
.+.|.||+|||... ..+.....+.+-|+++.+.| +||.+.|.|..+||+. ..|....+|+
T Consensus 32 ~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~v~~~~q~~Lg~ldi~V 100 (188)
T PF01174_consen 32 EGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAKEVEGQGQPLLGLLDITV 100 (188)
T ss_dssp TT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEEEECSSCCTSS--EEEEE
T ss_pred ccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhhhhhhcccccccceeEEE
Confidence 46899999999764 33556678999999999998 9999999999999984 2344445554
No 68
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=97.76 E-value=5.6e-05 Score=58.73 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=35.4
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++|.||+-||++... +......+++. +++++||.+||.|.++|+.+
T Consensus 42 ~~~~~iilsgGP~~~~--~~~~~~~~i~~-~~~~~PiLGIC~G~Qlla~~ 88 (191)
T PRK06774 42 LAPSHLVISPGPCTPN--EAGISLAVIRH-FADKLPILGVCLGHQALGQA 88 (191)
T ss_pred cCCCeEEEcCCCCChH--hCCCchHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence 3689999999986322 22334566654 57899999999999999987
No 69
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=97.74 E-value=7.4e-05 Score=59.23 Aligned_cols=48 Identities=23% Similarity=0.542 Sum_probs=40.0
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.+||+|||.||++... +.....++++++.++++||.+||.|.++|+.+
T Consensus 45 ~~~dgliisGGp~~~~--~~~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a 92 (214)
T PRK07765 45 AQFDGVLLSPGPGTPE--RAGASIDMVRACAAAGTPLLGVCLGHQAIGVA 92 (214)
T ss_pred cCCCEEEECCCCCChh--hcchHHHHHHHHHhCCCCEEEEccCHHHHHHH
Confidence 4699999999986321 23456799999999999999999999999986
No 70
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=97.73 E-value=7.3e-05 Score=58.06 Aligned_cols=50 Identities=30% Similarity=0.480 Sum_probs=38.7
Q ss_pred CCcCEEEEcCCCChhh---------------hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEY---------------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~---------------l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
..+|.||+|||..... ...+....++|+++.+.++||.+||.|.++|+.+
T Consensus 52 ~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~ 116 (189)
T cd01745 52 ELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKPILGICRGMQLLNVA 116 (189)
T ss_pred hhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCCEEEEcchHHHHHHH
Confidence 4699999999974211 0112245789999999999999999999999876
No 71
>PRK00784 cobyric acid synthase; Provisional
Probab=97.73 E-value=0.0001 Score=65.33 Aligned_cols=64 Identities=16% Similarity=0.282 Sum_probs=48.2
Q ss_pred cCcceeeccCCCCCCCCCcCEEEEcCCCCh---hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 44 RGHNFALNATFDEIDPTKYDGLVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 44 ~g~~i~~~~~~~~~~~~~~D~livpGG~~~---~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.|..+..-.+.+++ +++|.|++|||... ..+..+..+.+.|+++.++|+++.++|.|.++|++.
T Consensus 275 ~g~~v~~~s~~~~l--~~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~ 341 (488)
T PRK00784 275 PGVDVRYVRPGEPL--PDADLVILPGSKNTIADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRR 341 (488)
T ss_pred CCCeEEEECCcccc--ccCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhh
Confidence 45555544444443 58999999999742 123355668899999999999999999999999884
No 72
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=97.72 E-value=8.6e-05 Score=57.63 Aligned_cols=47 Identities=19% Similarity=0.264 Sum_probs=36.7
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++|.||+-||++... +.....++++++ ++++||.+||.|.++|+.+
T Consensus 42 ~~~d~iilsgGpg~p~--~~~~~~~~i~~~-~~~~PvLGIC~G~Qll~~~ 88 (188)
T TIGR00566 42 LLPLLIVISPGPCTPN--EAGISLEAIRHF-AGKLPILGVCLGHQAMGQA 88 (188)
T ss_pred cCCCEEEEcCCCCChh--hcchhHHHHHHh-ccCCCEEEECHHHHHHHHH
Confidence 3589999999986432 223347888887 6799999999999999986
No 73
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=97.68 E-value=3.8e-05 Score=58.75 Aligned_cols=49 Identities=31% Similarity=0.611 Sum_probs=42.7
Q ss_pred CCcCEEEEcCCCCh--hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHh
Q 029299 60 TKYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 108 (195)
Q Consensus 60 ~~~D~livpGG~~~--~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~ 108 (195)
++.|+||||||.+. ..+.....+.+-|+++..+|+|+.+.|.|..+||+
T Consensus 37 ~~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLak 87 (194)
T COG0311 37 EGVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAK 87 (194)
T ss_pred ccCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEechhhhhhhh
Confidence 57899999999874 33556677899999999999999999999999997
No 74
>PRK05670 anthranilate synthase component II; Provisional
Probab=97.66 E-value=0.00012 Score=56.73 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=35.2
Q ss_pred CcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 61 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 61 ~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
++|.||+.||++... +.....++|++ ..+++|+.+||.|.++|+.+
T Consensus 43 ~~dglIlsgGpg~~~--d~~~~~~~l~~-~~~~~PvLGIClG~Qlla~a 88 (189)
T PRK05670 43 NPDAIVLSPGPGTPA--EAGISLELIRE-FAGKVPILGVCLGHQAIGEA 88 (189)
T ss_pred CCCEEEEcCCCCChH--HcchHHHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence 489999988886422 22345677776 46789999999999999986
No 75
>PHA03366 FGAM-synthase; Provisional
Probab=97.65 E-value=0.00019 Score=70.12 Aligned_cols=55 Identities=27% Similarity=0.301 Sum_probs=47.0
Q ss_pred CCCcCEEEEcCCCCh-----------hhhccChHHHHHHHHHH-hCCCeEEEecH-HHHHHHhCCCCC
Q 029299 59 PTKYDGLVIPGGRAP-----------EYLAMNDSVIDLVRKFS-NSGKTIASICH-GQLILAAADVVK 113 (195)
Q Consensus 59 ~~~~D~livpGG~~~-----------~~l~~~~~l~~~l~~~~-~~~k~i~aic~-G~~lLa~aGlL~ 113 (195)
.++|+.|++|||++. ..+..++.+.+.+++|+ ++++.+.+||+ |.++|++.|++.
T Consensus 1070 l~~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~lgll~ 1137 (1304)
T PHA03366 1070 LDEFSGLVIGGSSGAEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILFALKAVG 1137 (1304)
T ss_pred cccceEEEEcCCCCCcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHcCCcc
Confidence 578999999999753 22457889999999999 45999999999 999999999994
No 76
>PRK05665 amidotransferase; Provisional
Probab=97.64 E-value=9.6e-05 Score=59.62 Aligned_cols=51 Identities=20% Similarity=0.389 Sum_probs=41.7
Q ss_pred CCCcCEEEEcCCCC-hh-hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 59 PTKYDGLVIPGGRA-PE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 59 ~~~~D~livpGG~~-~~-~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
..+||++||.||+. +. .......+.+||++.+++++++.+||-|..+||.+
T Consensus 55 ~~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~A 107 (240)
T PRK05665 55 DEKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALL 107 (240)
T ss_pred cccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHH
Confidence 35799999999964 32 12233678999999999999999999999999987
No 77
>PRK09065 glutamine amidotransferase; Provisional
Probab=97.61 E-value=9e-05 Score=59.66 Aligned_cols=51 Identities=29% Similarity=0.554 Sum_probs=41.4
Q ss_pred CCCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 59 PTKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 59 ~~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
..+||+|||.||+... .......+.++|+++.++++||.+||-|..+|+.+
T Consensus 52 ~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a 104 (237)
T PRK09065 52 PDDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHA 104 (237)
T ss_pred hhhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHH
Confidence 3579999999997531 12223567999999999999999999999999987
No 78
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.59 E-value=0.00025 Score=63.41 Aligned_cols=50 Identities=22% Similarity=0.387 Sum_probs=39.3
Q ss_pred CCcCEEEEcCCCChhh---hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~---l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++|.||+||+..... ......+.+.|+++.+.++|+.+||.|.++|+++
T Consensus 43 ~~~D~lIlpG~gs~~~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~ 95 (538)
T PLN02617 43 LNADRLIFPGVGAFGSAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFES 95 (538)
T ss_pred ccCCEEEECCCCCHHHHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence 5799999999654321 1223347888999999999999999999999974
No 79
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.59 E-value=0.00011 Score=57.55 Aligned_cols=50 Identities=16% Similarity=0.285 Sum_probs=38.8
Q ss_pred CCcCEEEEcCCCChhh---hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~---l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++|.||+||+..... ......+.++|+++.+.++|+.+||.|..+|+.+
T Consensus 36 ~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~ 88 (199)
T PRK13181 36 AGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQLLFES 88 (199)
T ss_pred ccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhh
Confidence 4689999999643211 1122346788999999999999999999999997
No 80
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.58 E-value=0.00016 Score=56.55 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=31.8
Q ss_pred CCcCEEEEcCCCCh-hh--hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAP-EY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~-~~--l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++|.||+||.-.+ .. ......+.+.|++ .++||.+||.|..+|+++
T Consensus 37 ~~~d~iIlPG~G~~~~~~~~l~~~~l~~~i~~---~~~PilGIClG~Qll~~~ 86 (196)
T PRK13170 37 LAADKLFLPGVGTAQAAMDQLRERELIDLIKA---CTQPVLGICLGMQLLGER 86 (196)
T ss_pred CCCCEEEECCCCchHHHHHHHHHcChHHHHHH---cCCCEEEECHHHHHHhhh
Confidence 46899999994332 11 1112234555554 489999999999999987
No 81
>PRK05637 anthranilate synthase component II; Provisional
Probab=97.57 E-value=0.0002 Score=56.60 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=34.7
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
..||.||+-||++... +.....+++++.. .++||.+||.|.++|+.+
T Consensus 43 ~~~~~iIlsgGPg~~~--d~~~~~~li~~~~-~~~PiLGIClG~Qlla~a 89 (208)
T PRK05637 43 ANPDLICLSPGPGHPR--DAGNMMALIDRTL-GQIPLLGICLGFQALLEH 89 (208)
T ss_pred cCCCEEEEeCCCCCHH--HhhHHHHHHHHHh-CCCCEEEEcHHHHHHHHH
Confidence 4689999988887432 1223456665543 589999999999999987
No 82
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=97.56 E-value=0.00015 Score=56.08 Aligned_cols=49 Identities=37% Similarity=0.660 Sum_probs=42.0
Q ss_pred CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
..+||.+||+||++... +.....++++++.++++|+.+||.|.++|+.+
T Consensus 40 ~~~~d~iii~Gg~~~~~--d~~~~~~~i~~~~~~~~PilGIC~G~Q~la~~ 88 (192)
T PF00117_consen 40 LDDYDGIIISGGPGSPY--DIEGLIELIREARERKIPILGICLGHQILAHA 88 (192)
T ss_dssp TTTSSEEEEECESSSTT--SHHHHHHHHHHHHHTTSEEEEETHHHHHHHHH
T ss_pred hcCCCEEEECCcCCccc--cccccccccccccccceEEEEEeehhhhhHHh
Confidence 36899999999987532 25778899999999999999999999999986
No 83
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.56 E-value=0.00034 Score=54.82 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=35.4
Q ss_pred CCcCEEEEcCCCChhh---hccChHHHHHHHHH-HhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEY---LAMNDSVIDLVRKF-SNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~---l~~~~~l~~~l~~~-~~~~k~i~aic~G~~lLa~a 109 (195)
.++|.||+||+..+.. ......+...|+++ .++++|+.+||.|.++|+.+
T Consensus 36 ~~~d~lilPG~g~~~~~~~~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~ 89 (201)
T PRK13152 36 QKADKLLLPGVGSFKEAMKNLKELGFIEALKEQVLVQKKPILGICLGMQLFLER 89 (201)
T ss_pred cCCCEEEECCCCchHHHHHHHHHcCcHHHHHHHHHhCCCcEEEECHhHHHHhhc
Confidence 4689999999765321 11111244555554 58899999999999999987
No 84
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=97.52 E-value=0.00024 Score=55.69 Aligned_cols=57 Identities=30% Similarity=0.468 Sum_probs=44.6
Q ss_pred CCCCCCCCCcCEEEEcCCCChhhhcc--ChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 53 TFDEIDPTKYDGLVIPGGRAPEYLAM--NDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 53 ~~~~~~~~~~D~livpGG~~~~~l~~--~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
+.......++|++||.||+..-+... .+...++|++....+++|.+||.|.++||.+
T Consensus 37 ~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~ 95 (198)
T COG0518 37 DAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKA 95 (198)
T ss_pred CcccccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHH
Confidence 34444445679999999984322223 6789999999999999999999999999986
No 85
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=97.52 E-value=0.00024 Score=60.54 Aligned_cols=46 Identities=28% Similarity=0.472 Sum_probs=37.7
Q ss_pred CcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 61 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 61 ~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.+|.||+.||++-.. ......++++++.+ ++|+.+||.|.++|+.+
T Consensus 214 ~pDGIiLSgGPgdp~--~~~~~i~~i~~~~~-~~PILGIClG~QlLa~a 259 (358)
T TIGR01368 214 NPDGIFLSNGPGDPA--AVEPAIETIRKLLE-KIPIFGICLGHQLLALA 259 (358)
T ss_pred CCCEEEECCCCCCHH--HHHHHHHHHHHHHc-CCCEEEECHHHHHHHHH
Confidence 469999999986421 24567788888887 99999999999999976
No 86
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=97.50 E-value=0.00035 Score=59.93 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=38.3
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++|.||+.||+|-.. ......+.++++.+.++|+.+||.|..+|+.+
T Consensus 232 ~~~dgIilSgGPg~p~--~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a 279 (382)
T CHL00197 232 YQPDGILLSNGPGDPS--AIHYGIKTVKKLLKYNIPIFGICMGHQILSLA 279 (382)
T ss_pred cCCCEEEEcCCCCChh--HHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHH
Confidence 4789999999987432 23456677788877789999999999999976
No 87
>CHL00101 trpG anthranilate synthase component 2
Probab=97.49 E-value=0.00021 Score=55.52 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=34.9
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++|+|||-||++... +.. +...+.+..++++|+.+||-|.++|+.+
T Consensus 42 ~~~dgiiisgGpg~~~--~~~-~~~~i~~~~~~~~PiLGIClG~Qlla~~ 88 (190)
T CHL00101 42 LNIRHIIISPGPGHPR--DSG-ISLDVISSYAPYIPILGVCLGHQSIGYL 88 (190)
T ss_pred CCCCEEEECCCCCChH--HCc-chHHHHHHhcCCCcEEEEchhHHHHHHH
Confidence 4689999999987432 122 2333445577899999999999999986
No 88
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=97.49 E-value=0.00026 Score=60.16 Aligned_cols=47 Identities=26% Similarity=0.408 Sum_probs=37.8
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++|.||++||++... +.....++++++.++ +|+.+||.|.++|+.+
T Consensus 207 ~~~DGIiLsgGPgdp~--~~~~~~~~i~~~~~~-~PvlGIClG~QlLa~a 253 (354)
T PRK12838 207 LNPDGIVLSNGPGDPK--ELQPYLPEIKKLISS-YPILGICLGHQLIALA 253 (354)
T ss_pred cCCCEEEEcCCCCChH--HhHHHHHHHHHHhcC-CCEEEECHHHHHHHHH
Confidence 4689999999986321 234567888888877 9999999999999976
No 89
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=97.49 E-value=0.0004 Score=53.52 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=35.3
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++|+||+.||.+... ++. ....+++...+++|+.+||.|..+|+.+
T Consensus 41 ~~~dgvil~gG~~~~~--~~~-~~~~i~~~~~~~~PvlGIC~G~Qlla~~ 87 (184)
T cd01743 41 LNPDAIVISPGPGHPE--DAG-ISLEIIRALAGKVPILGVCLGHQAIAEA 87 (184)
T ss_pred cCCCEEEECCCCCCcc--cch-hHHHHHHHHhcCCCEEEECHhHHHHHHH
Confidence 5699999988776421 122 4555666667889999999999999986
No 90
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=97.44 E-value=0.00047 Score=67.02 Aligned_cols=56 Identities=20% Similarity=0.260 Sum_probs=46.8
Q ss_pred CCCcCEEEEcCCCCh-----------hhhccChHHHHHHHHHH-hCCCeEEEecH-HHHHHHhCCCCCC
Q 029299 59 PTKYDGLVIPGGRAP-----------EYLAMNDSVIDLVRKFS-NSGKTIASICH-GQLILAAADVVKG 114 (195)
Q Consensus 59 ~~~~D~livpGG~~~-----------~~l~~~~~l~~~l~~~~-~~~k~i~aic~-G~~lLa~aGlL~g 114 (195)
.++|+.|++|||++. ..+..++.+.+.+++|+ +.++.+.+||+ |.++|.+.|++..
T Consensus 971 l~~f~glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~lg~l~~ 1039 (1202)
T TIGR01739 971 LDTFSGLIIGGASGTLDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLALNIVGY 1039 (1202)
T ss_pred hhheEEEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHHcCCCcC
Confidence 358999999999652 22456889999999999 55999999999 9999999999853
No 91
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=97.44 E-value=0.00031 Score=54.90 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=35.1
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++|+||+-||++... +.......++. +++++|+.+||-|.++|+.+
T Consensus 42 ~~~d~iIlsgGP~~p~--~~~~~~~~i~~-~~~~~PvLGIClG~Qlla~~ 88 (195)
T PRK07649 42 MKPDFLMISPGPCSPN--EAGISMEVIRY-FAGKIPIFGVCLGHQSIAQV 88 (195)
T ss_pred CCCCEEEECCCCCChH--hCCCchHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence 4689999999986422 12335566664 45789999999999999986
No 92
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.43 E-value=0.00032 Score=55.42 Aligned_cols=51 Identities=22% Similarity=0.271 Sum_probs=36.0
Q ss_pred CCcCEEEEcCCCChh----hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCC
Q 029299 60 TKYDGLVIPGGRAPE----YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 110 (195)
Q Consensus 60 ~~~D~livpGG~~~~----~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aG 110 (195)
+++|.|||||+.... .+........+++...+.++|+.+||.|..+|++++
T Consensus 40 ~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~ 94 (209)
T PRK13146 40 AAADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFERG 94 (209)
T ss_pred cCCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhcc
Confidence 689999999974321 122222233445555678999999999999999984
No 93
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=97.43 E-value=0.00019 Score=55.83 Aligned_cols=50 Identities=28% Similarity=0.454 Sum_probs=40.2
Q ss_pred CCcCEEEEcC-CCC--hhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPG-GRA--PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpG-G~~--~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
...|.||+|| |.- +........+.+.|++....+||+.+||-|.++|.+.
T Consensus 38 ~~AD~liLPGVGaf~~am~~L~~~gl~~~i~~~~~~~kP~LGIClGMQlLfe~ 90 (204)
T COG0118 38 LKADKLILPGVGAFGAAMANLRERGLIEAIKEAVESGKPFLGICLGMQLLFER 90 (204)
T ss_pred hhCCEEEecCCCCHHHHHHHHHhcchHHHHHHHHhcCCCEEEEeHhHHhhhhc
Confidence 5799999999 432 2222344589999999999999999999999999876
No 94
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=97.43 E-value=0.00038 Score=54.19 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=34.8
Q ss_pred CcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 61 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 61 ~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
++|.+++-||++-.. ++.....+++. .++++|+.|||.|.++|+.+
T Consensus 43 ~~~~iilsgGp~~~~--~~~~~~~~i~~-~~~~~PiLGIClG~Qlia~a 88 (193)
T PRK08857 43 NPTHLVISPGPCTPN--EAGISLQAIEH-FAGKLPILGVCLGHQAIAQV 88 (193)
T ss_pred CCCEEEEeCCCCChH--HCcchHHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence 579999988875321 23334567765 57899999999999999986
No 95
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.40 E-value=0.00035 Score=54.43 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=35.6
Q ss_pred CCcCEEEEcCCCChh---hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~---~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++|.||+||+-.+. .......+.+.|++ +.++|+.+||.|.++|++.
T Consensus 36 ~~~D~lIlPG~g~~~~~~~~L~~~gl~~~i~~--~~g~PvlGIClGmQlL~~~ 86 (192)
T PRK13142 36 DQAETIILPGVGHFKDAMSEIKRLNLNAILAK--NTDKKMIGICLGMQLMYEH 86 (192)
T ss_pred ccCCEEEECCCCCHHHHHHHHHHCCcHHHHHH--hCCCeEEEECHHHHHHhhh
Confidence 468999999984421 11223346778877 5699999999999999876
No 96
>PRK00758 GMP synthase subunit A; Validated
Probab=97.38 E-value=0.00033 Score=54.03 Aligned_cols=44 Identities=27% Similarity=0.556 Sum_probs=33.5
Q ss_pred CCc-CEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKY-DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~-D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++ |+||++||+... ....+.++|+ +.++|+.+||.|.++|+.+
T Consensus 39 ~~~~dgivi~Gg~~~~---~~~~~~~~l~---~~~~PilGIC~G~Q~L~~a 83 (184)
T PRK00758 39 KAFEDGLILSGGPDIE---RAGNCPEYLK---ELDVPILGICLGHQLIAKA 83 (184)
T ss_pred hhcCCEEEECCCCChh---hccccHHHHH---hCCCCEEEEeHHHHHHHHh
Confidence 346 999999997432 2234556666 4589999999999999987
No 97
>PLN02335 anthranilate synthase
Probab=97.32 E-value=0.00054 Score=54.62 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=34.0
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++|+|||-||++... +.....+++++ ...++|+.+||.|..+|+.+
T Consensus 61 ~~~d~iVisgGPg~p~--d~~~~~~~~~~-~~~~~PiLGIClG~QlLa~a 107 (222)
T PLN02335 61 KNPRGVLISPGPGTPQ--DSGISLQTVLE-LGPLVPLFGVCMGLQCIGEA 107 (222)
T ss_pred cCCCEEEEcCCCCChh--hccchHHHHHH-hCCCCCEEEecHHHHHHHHH
Confidence 3589999999987432 12233555554 45679999999999999975
No 98
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.31 E-value=0.00032 Score=55.45 Aligned_cols=49 Identities=29% Similarity=0.434 Sum_probs=39.7
Q ss_pred CCcCEEEEcCCCCh----hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAP----EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~----~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++|.||+||+... ..+ ....+...|+++.++++|+.+||.|..+|+++
T Consensus 36 ~~~d~iIlPG~g~~~~~~~~l-~~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~ 88 (210)
T PRK14004 36 ENSKALILPGDGHFDKAMENL-NSTGLRSTIDKHVESGKPLFGICIGFQILFES 88 (210)
T ss_pred ccCCEEEECCCCchHHHHHHH-HHcCcHHHHHHHHHcCCCEEEECHhHHHHHHh
Confidence 47899999998532 223 23458899999999999999999999999985
No 99
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.18 E-value=0.00037 Score=49.72 Aligned_cols=45 Identities=29% Similarity=0.484 Sum_probs=35.2
Q ss_pred CCcCEEEEcCCCCh---hhhccChHHHHHHHHHHhCCCeEEEecHHHHHH
Q 029299 60 TKYDGLVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 106 (195)
Q Consensus 60 ~~~D~livpGG~~~---~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lL 106 (195)
.++|.||+|||... ..+ .... .+.|+++.++++++.+||.|+.+.
T Consensus 43 ~~ad~lVlPGGa~~~~~~~L-~~~g-~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 43 SKTALLVVPGGADLPYCRAL-NGKG-NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred hCCCEEEECCCChHHHHHHH-HhhC-cHHHHHHHHCCCcEEEEecCccce
Confidence 47999999997542 223 2333 888999999999999999999865
No 100
>PRK07567 glutamine amidotransferase; Provisional
Probab=97.15 E-value=0.00066 Score=54.83 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=36.4
Q ss_pred CCCcCEEEEcCCCChh-hh--ccCh-------HHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 59 PTKYDGLVIPGGRAPE-YL--AMND-------SVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 59 ~~~~D~livpGG~~~~-~l--~~~~-------~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++||+|||.||.... +. ...+ .+.++++...++++||.+||.|.++|+.+
T Consensus 49 ~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a 109 (242)
T PRK07567 49 LDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHH 109 (242)
T ss_pred HhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHH
Confidence 4679999999997432 11 0122 23345555568999999999999999987
No 101
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=97.12 E-value=0.0014 Score=56.60 Aligned_cols=47 Identities=21% Similarity=0.387 Sum_probs=37.1
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++|.||+-||+|-.. ..+...+.+++.. .++||.+||.|.++|+.+
T Consensus 280 ~~pDGIiLSnGPGDP~--~~~~~ie~ik~l~-~~iPIlGICLGhQlLa~A 326 (415)
T PLN02771 280 MKPDGVLFSNGPGDPS--AVPYAVETVKELL-GKVPVFGICMGHQLLGQA 326 (415)
T ss_pred cCCCEEEEcCCCCChh--HhhHHHHHHHHHH-hCCCEEEEcHHHHHHHHh
Confidence 4699999999986332 3455677777766 478999999999999986
No 102
>PRK13566 anthranilate synthase; Provisional
Probab=97.12 E-value=0.0013 Score=60.98 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=39.1
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++|.||+.||++... +..+.++|++..++++||.+||.|.++|+.+
T Consensus 568 ~~~DgVVLsgGpgsp~---d~~~~~lI~~a~~~~iPILGIClG~QlLa~a 614 (720)
T PRK13566 568 VNPDLVVLSPGPGRPS---DFDCKATIDAALARNLPIFGVCLGLQAIVEA 614 (720)
T ss_pred cCCCEEEECCCCCChh---hCCcHHHHHHHHHCCCcEEEEehhHHHHHHH
Confidence 5789999988876421 2346899999999999999999999999987
No 103
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=97.07 E-value=0.0012 Score=53.06 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=39.2
Q ss_pred CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
..++|.||++||++... ......+++...++++|+.+||.|.++|+.+
T Consensus 53 l~~~dgivl~GG~~~~~---~~~~~~~i~~~~~~~~PvlGIClG~Q~l~~~ 100 (235)
T cd01746 53 LKGADGILVPGGFGIRG---VEGKILAIKYARENNIPFLGICLGMQLAVIE 100 (235)
T ss_pred hccCCEEEECCCCCCcc---hhhHHHHHHHHHHCCceEEEEEhHHHHHHHH
Confidence 35799999999986543 3456778999999999999999999988654
No 104
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.03 E-value=0.002 Score=49.81 Aligned_cols=58 Identities=24% Similarity=0.433 Sum_probs=44.9
Q ss_pred CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC---------CCCCCceEec
Q 029299 59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA---------DVVKGRKCTA 119 (195)
Q Consensus 59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a---------GlL~g~~~T~ 119 (195)
..++|.|+|-.|+|... +.....+.|+++ .+.+||.+||-|-+.++++ -...||.-..
T Consensus 43 ~~~pd~iviSPGPG~P~--d~G~~~~~i~~~-~~~~PiLGVCLGHQai~~~fGg~V~~a~~~~HGK~s~i 109 (191)
T COG0512 43 ALKPDAIVISPGPGTPK--DAGISLELIRRF-AGRIPILGVCLGHQAIAEAFGGKVVRAKEPMHGKTSII 109 (191)
T ss_pred hcCCCEEEEcCCCCChH--HcchHHHHHHHh-cCCCCEEEECccHHHHHHHhCCEEEecCCCcCCeeeee
Confidence 35689999988887543 456688889988 7789999999999999987 2566665433
No 105
>PLN02347 GMP synthetase
Probab=97.02 E-value=0.0018 Score=57.99 Aligned_cols=50 Identities=14% Similarity=0.252 Sum_probs=34.7
Q ss_pred CCcCEEEEcCCCChhhhccChHHH-HHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVI-DLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~-~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++|+||++||++.......+.+. .+++...+.++||.|||.|.++|+.+
T Consensus 52 ~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~a 102 (536)
T PLN02347 52 LNPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQK 102 (536)
T ss_pred CCCCEEEECCCCCcccccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHH
Confidence 368999999997643222233222 33344446789999999999999986
No 106
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=97.01 E-value=0.0021 Score=59.50 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=38.8
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++|.|||-||++... +....++|++..++++|+.+||.|.++|+++
T Consensus 558 ~~~DgLILsgGPGsp~---d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a 604 (717)
T TIGR01815 558 RRPDLVVLSPGPGRPA---DFDVAGTIDAALARGLPVFGVCLGLQGMVEA 604 (717)
T ss_pred cCCCEEEEcCCCCCch---hcccHHHHHHHHHCCCCEEEECHHHHHHhhh
Confidence 4699999988876421 2345788999999999999999999999987
No 107
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=96.98 E-value=0.0013 Score=58.12 Aligned_cols=50 Identities=24% Similarity=0.503 Sum_probs=41.4
Q ss_pred CCCcCEEEEcCCCChh---hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHh
Q 029299 59 PTKYDGLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 108 (195)
Q Consensus 59 ~~~~D~livpGG~~~~---~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~ 108 (195)
.+++|+|++|||.... .+..+..+.+.|+++.++|++|.++|.|-++|.+
T Consensus 282 l~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~ 334 (475)
T TIGR00313 282 LTGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGYQMLGK 334 (475)
T ss_pred cccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhh
Confidence 4588999999997431 2334556889999999999999999999999998
No 108
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=96.84 E-value=0.0021 Score=51.64 Aligned_cols=52 Identities=10% Similarity=0.174 Sum_probs=41.8
Q ss_pred CCCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCC
Q 029299 59 PTKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 110 (195)
Q Consensus 59 ~~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aG 110 (195)
..+.|+|+|+||.... .......+.+.|++++++|+++++.|.|+.+++...
T Consensus 77 l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i 130 (233)
T PRK05282 77 IENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPTI 130 (233)
T ss_pred HhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhccc
Confidence 3678999999997542 233455688899999999999999999999987753
No 109
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=96.75 E-value=0.0022 Score=52.14 Aligned_cols=71 Identities=23% Similarity=0.307 Sum_probs=47.1
Q ss_pred ccccccCcceeeccCCCC---C--CCCCcCEEEEcCCC-Chh--hh-----------ccChHHHHHHHHHHhCCCeEEEe
Q 029299 39 TYSETRGHNFALNATFDE---I--DPTKYDGLVIPGGR-APE--YL-----------AMNDSVIDLVRKFSNSGKTIASI 99 (195)
Q Consensus 39 ~v~~~~g~~i~~~~~~~~---~--~~~~~D~livpGG~-~~~--~l-----------~~~~~l~~~l~~~~~~~k~i~ai 99 (195)
.+...+|..+.......+ . -.+.+|.||++||. ... .+ ..+....++|+.+.++++||.+|
T Consensus 34 ~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGI 113 (254)
T PRK11366 34 AIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAI 113 (254)
T ss_pred HHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEE
Confidence 344456665554432221 1 02459999999984 321 01 11234679999999999999999
Q ss_pred cHHHHHHHhC
Q 029299 100 CHGQLILAAA 109 (195)
Q Consensus 100 c~G~~lLa~a 109 (195)
|-|.++|+.+
T Consensus 114 CrG~Qllnva 123 (254)
T PRK11366 114 CRGLQELVVA 123 (254)
T ss_pred CHhHHHHHHH
Confidence 9999999876
No 110
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=96.70 E-value=0.0035 Score=56.32 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=35.9
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++|+||+.||++... ++....++++. ..+++||.+||.|.++|+.+
T Consensus 43 ~~~d~vIlsgGP~~p~--~~~~~~~li~~-~~~~~PvLGIClG~QlLa~a 89 (534)
T PRK14607 43 LNPSHIVISPGPGRPE--EAGISVEVIRH-FSGKVPILGVCLGHQAIGYA 89 (534)
T ss_pred cCCCEEEECCCCCChh--hCCccHHHHHH-hhcCCCEEEEcHHHHHHHHH
Confidence 4689999999987422 22334567776 46789999999999999986
No 111
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=96.69 E-value=0.0017 Score=51.38 Aligned_cols=50 Identities=10% Similarity=0.077 Sum_probs=40.3
Q ss_pred CCCcCEEEEcCCCCh---hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 59 PTKYDGLVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 59 ~~~~D~livpGG~~~---~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
..++|+|++|||.-. ..+ ....+.+.|++.+++|++++++|.|+.++.+.
T Consensus 78 l~~ad~I~l~GG~~~~~~~~l-~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 78 LLEADVIYVGGGNTFNLLAQW-REHGLDAILKAALERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred HhcCCEEEECCchHHHHHHHH-HHcCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence 368999999998532 223 33468888999999999999999999999884
No 112
>PRK06186 hypothetical protein; Validated
Probab=96.67 E-value=0.0028 Score=50.69 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=37.2
Q ss_pred CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHH
Q 029299 59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 105 (195)
Q Consensus 59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~l 105 (195)
..++|.|+||||+|.+ .-+--+..++.+.++++|+.+||-|.++
T Consensus 51 l~~~dgilvpgGfg~r---g~~Gki~ai~~Are~~iP~LGIClGmQ~ 94 (229)
T PRK06186 51 LAGFDGIWCVPGSPYR---NDDGALTAIRFARENGIPFLGTCGGFQH 94 (229)
T ss_pred HhhCCeeEeCCCCCcc---cHhHHHHHHHHHHHcCCCeEeechhhHH
Confidence 4678999999998854 3445678899999999999999999995
No 113
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=96.55 E-value=0.0065 Score=51.20 Aligned_cols=57 Identities=26% Similarity=0.417 Sum_probs=45.1
Q ss_pred ccCCCCCCCCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 51 NATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 51 ~~~~~~~~~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
+.+.+++-.-++|.||+--|+|-. ..-+..++.+++.....+|+.+||.|-++||.|
T Consensus 210 ~t~~eeIl~~~pDGiflSNGPGDP--~~~~~~i~~ik~l~~~~iPifGICLGHQllalA 266 (368)
T COG0505 210 DTSAEEILALNPDGIFLSNGPGDP--APLDYAIETIKELLGTKIPIFGICLGHQLLALA 266 (368)
T ss_pred CCCHHHHHhhCCCEEEEeCCCCCh--hHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHh
Confidence 334444333579999999888743 245678999999999999999999999999987
No 114
>PRK05380 pyrG CTP synthetase; Validated
Probab=96.51 E-value=0.0046 Score=55.04 Aligned_cols=47 Identities=21% Similarity=0.342 Sum_probs=39.0
Q ss_pred CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHh
Q 029299 59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 108 (195)
Q Consensus 59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~ 108 (195)
...+|.|++|||+|... .+....+++.+.++++|+.+||.|.++++-
T Consensus 341 L~~~DGIIlpGGfG~~~---~~g~i~~i~~a~e~~iPiLGIClGmQll~v 387 (533)
T PRK05380 341 LKGVDGILVPGGFGERG---IEGKILAIRYARENNIPFLGICLGMQLAVI 387 (533)
T ss_pred hhcCCEEEecCCCCccc---cccHHHHHHHHHHCCCcEEEEchHHHHHHH
Confidence 45799999999987643 334678889999999999999999998764
No 115
>PRK00074 guaA GMP synthase; Reviewed
Probab=96.26 E-value=0.0085 Score=53.55 Aligned_cols=46 Identities=22% Similarity=0.389 Sum_probs=32.8
Q ss_pred CcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 61 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 61 ~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
++|+||++||+....-...+.+ .+...+.++||.|||.|.++|+.+
T Consensus 46 ~~dgIIlsGGp~sv~~~~~p~~---~~~i~~~~~PvLGIC~G~QlLa~~ 91 (511)
T PRK00074 46 NPKGIILSGGPASVYEEGAPRA---DPEIFELGVPVLGICYGMQLMAHQ 91 (511)
T ss_pred CCCEEEECCCCcccccCCCccc---cHHHHhCCCCEEEECHHHHHHHHH
Confidence 5699999999753211122223 344566899999999999999986
No 116
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=96.22 E-value=0.0049 Score=54.48 Aligned_cols=45 Identities=36% Similarity=0.597 Sum_probs=33.7
Q ss_pred CCcCEEEEcCCCCh--hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~--~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++|+||+|||.-. ..+ ...+.+.|+++ |+||.+||.|.++|++.
T Consensus 35 ~~~D~lILPGG~~~~~~~l--~~~l~~~i~~~---g~pvlGICgG~QmLg~~ 81 (476)
T PRK06278 35 KDLDGLIIPGGSLVESGSL--TDELKKEILNF---DGYIIGICSGFQILSEK 81 (476)
T ss_pred ccCCEEEECCCchhhcchH--HHHHHHHHHHc---CCeEEEEcHHHHhcccc
Confidence 57999999998421 112 23455666655 99999999999999987
No 117
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=96.18 E-value=0.0093 Score=53.53 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=32.7
Q ss_pred CCcCEEEEcCCCChh-hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~-~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.++|.||+-||++.. +....+ ++.+....++||.+||.|.++|+.+
T Consensus 47 ~~~~~IIlSpGPg~p~d~~~~~----~i~~~~~~~iPILGIClG~QlLa~a 93 (531)
T PRK09522 47 MSNPVLMLSPGPGVPSEAGCMP----ELLTRLRGKLPIIGICLGHQAIVEA 93 (531)
T ss_pred cCcCEEEEcCCCCChhhCCCCH----HHHHHHhcCCCEEEEcHHHHHHHHh
Confidence 357899999998743 222222 2333345689999999999999987
No 118
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=96.13 E-value=0.01 Score=47.47 Aligned_cols=67 Identities=25% Similarity=0.416 Sum_probs=47.7
Q ss_pred cccCcceeeccCCCCC-----CCCCcCEEEEcCCCC--hh-------------hhccChHHHHHHHHHHhCCCeEEEecH
Q 029299 42 ETRGHNFALNATFDEI-----DPTKYDGLVIPGGRA--PE-------------YLAMNDSVIDLVRKFSNSGKTIASICH 101 (195)
Q Consensus 42 ~~~g~~i~~~~~~~~~-----~~~~~D~livpGG~~--~~-------------~l~~~~~l~~~l~~~~~~~k~i~aic~ 101 (195)
..+|..+..+ .+.+- -.+..|.|+++||.. +. +..+|.--+.+||++.++++||.+||-
T Consensus 37 ~aGg~pillP-~~~d~~~~~~~l~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICR 115 (243)
T COG2071 37 KAGGIPILLP-ALEDPEDARQYLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICR 115 (243)
T ss_pred HcCCceEEec-CCCCHHHHHHHHhhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEcc
Confidence 3567776655 33221 135689999999932 21 122455678999999999999999999
Q ss_pred HHHHHHhC
Q 029299 102 GQLILAAA 109 (195)
Q Consensus 102 G~~lLa~a 109 (195)
|.++|.-+
T Consensus 116 G~QllNVa 123 (243)
T COG2071 116 GLQLLNVA 123 (243)
T ss_pred chHHHHHH
Confidence 99998764
No 119
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=96.13 E-value=0.0052 Score=46.53 Aligned_cols=50 Identities=26% Similarity=0.494 Sum_probs=39.9
Q ss_pred CCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCC-CeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~-k~i~aic~G~~lLa~a 109 (195)
.+.|+||||||.... .+.+-..|..-|-++..++ +++.+.|.|..+|.+.
T Consensus 55 aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~q 107 (226)
T KOG3210|consen 55 AQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQ 107 (226)
T ss_pred hhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhhh
Confidence 578999999997642 2344455888888988887 9999999999988764
No 120
>PLN02327 CTP synthase
Probab=95.91 E-value=0.015 Score=52.02 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=36.7
Q ss_pred CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHh
Q 029299 59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 108 (195)
Q Consensus 59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~ 108 (195)
..++|.|++|||+|.... ......++.+.++++|+.+||.|.++++-
T Consensus 360 L~~~DGIvvpGGfG~~~~---~G~i~ai~~are~~iP~LGIClGmQl~vi 406 (557)
T PLN02327 360 LKGADGILVPGGFGDRGV---EGKILAAKYARENKVPYLGICLGMQIAVI 406 (557)
T ss_pred hccCCEEEeCCCCCCccc---ccHHHHHHHHHHcCCCEEEEcHHHHHHHH
Confidence 467999999999875432 23456677788899999999999998754
No 121
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=95.89 E-value=0.014 Score=51.90 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=36.6
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHh
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 108 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~ 108 (195)
.++|.|++|||+|... .......++.+.+++.|+.+||.|.++++.
T Consensus 342 ~~~dGIiLpGG~G~~~---~~g~i~ai~~a~e~~iP~LGIClG~Qll~i 387 (525)
T TIGR00337 342 KGVDGILVPGGFGERG---VEGKILAIKYARENNIPFLGICLGMQLAVI 387 (525)
T ss_pred cCCCEEEeCCCCCChh---hcChHHHHHHHHHcCCCEEEEcHHHHHHHH
Confidence 4689999999987543 233456778888899999999999988754
No 122
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=95.54 E-value=0.026 Score=46.40 Aligned_cols=50 Identities=16% Similarity=0.299 Sum_probs=32.3
Q ss_pred CCcCEEEEcCCC-ChhhhccChHHHHHHHHH---HhCC--CeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGR-APEYLAMNDSVIDLVRKF---SNSG--KTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~-~~~~l~~~~~l~~~l~~~---~~~~--k~i~aic~G~~lLa~a 109 (195)
..+|.|++|||. ........+....+++.+ .++| .||.++|.|..+|+.+
T Consensus 53 ~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~QlL~~~ 108 (273)
T cd01747 53 KSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGFELLTYL 108 (273)
T ss_pred hhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHHHHHHHH
Confidence 568999999985 222111223334444444 4444 7999999999998873
No 123
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=95.18 E-value=0.015 Score=46.19 Aligned_cols=55 Identities=44% Similarity=0.773 Sum_probs=43.7
Q ss_pred eCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCC
Q 029299 17 ACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGR 71 (195)
Q Consensus 17 ~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~ 71 (195)
++|+.+.++.|......+++++.+.++-|.+......|+++..+.||.|++|||.
T Consensus 193 v~~~~~~~e~~a~~~~~~~~~~v~~~~~g~~~~~~~~~dd~~~~syD~ivlPgg~ 247 (247)
T KOG2764|consen 193 VAPEKKAGEACATADHDLEGRQVPVEKVGHNFAKTVAWDDAAVSSYDLIVLPGGR 247 (247)
T ss_pred cCCCchhcceecceehhhhcCcceeeccccceEEEEEehhhhcccccEEEecCCC
Confidence 6666666666666555566778888888888888888999988999999999983
No 124
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=95.17 E-value=0.029 Score=44.48 Aligned_cols=50 Identities=32% Similarity=0.560 Sum_probs=31.5
Q ss_pred CCcCEEEEcCCC-Ch--hhh-------------ccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGR-AP--EYL-------------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~-~~--~~l-------------~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
+..|.|++|||. .. ..+ .++.--+.+++.+.++++||.+||-|..+|.-+
T Consensus 57 ~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~ 122 (217)
T PF07722_consen 57 DRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNVA 122 (217)
T ss_dssp HCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHHH
T ss_pred hhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHH
Confidence 468999999997 32 111 122234677788888999999999999998653
No 125
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=95.16 E-value=0.06 Score=50.82 Aligned_cols=48 Identities=29% Similarity=0.513 Sum_probs=40.1
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.+||.||+..|+|-.. ..+.+.+-+++....++||.+||.|-++||.+
T Consensus 209 ~~yDGlflSNGPGdPe--~~~~~v~~vr~lL~~~~PvfGIClGHQllA~A 256 (1435)
T KOG0370|consen 209 EEYDGLFLSNGPGDPE--LCPLLVQNVRELLESNVPVFGICLGHQLLALA 256 (1435)
T ss_pred cccceEEEeCCCCCch--hhHHHHHHHHHHHhCCCCeEEEehhhHHHHHh
Confidence 4899999999988543 25667777888887789999999999999986
No 126
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=95.10 E-value=0.035 Score=47.52 Aligned_cols=49 Identities=29% Similarity=0.501 Sum_probs=38.8
Q ss_pred CCcCEEEEcCCCChhhh-ccChHHHHHHHHHHhCCCeEEEecHHHHHHHh
Q 029299 60 TKYDGLVIPGGRAPEYL-AMNDSVIDLVRKFSNSGKTIASICHGQLILAA 108 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l-~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~ 108 (195)
..++++|+|||...... .-+..-.+.||++.++|+...+||.|+.+-.+
T Consensus 48 ~~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as~ 97 (367)
T PF09825_consen 48 SKCALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAGAYYASS 97 (367)
T ss_pred cCCcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcchhhhcc
Confidence 46899999999764321 12556688999999999999999999987664
No 127
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=94.74 E-value=0.055 Score=50.56 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=34.1
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhC----CCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNS----GKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~----~k~i~aic~G~~lLa~a 109 (195)
.+||+|||.||+|... ++.-..++++..+. ++||.|||.|.++|+.+
T Consensus 52 ~~~D~VVIspGPG~p~---~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a 102 (742)
T TIGR01823 52 PLFDAIVVGPGPGNPN---NAQDMGIISELWELANLDEVPVLGICLGFQSLCLA 102 (742)
T ss_pred cCCCEEEECCCCCCcc---chhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhh
Confidence 5799999999987532 22223445555543 59999999999999986
No 128
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=94.72 E-value=0.069 Score=46.98 Aligned_cols=42 Identities=24% Similarity=0.428 Sum_probs=35.1
Q ss_pred cCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHH
Q 029299 62 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 106 (195)
Q Consensus 62 ~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lL 106 (195)
+|.++||||+|.+. -+--+..++.+.+++.|..+||.|.++.
T Consensus 344 ~dgIlVPGGFG~RG---~eGkI~Ai~yAREn~iP~lGIClGmQ~a 385 (533)
T COG0504 344 VDGILVPGGFGYRG---VEGKIAAIRYARENNIPFLGICLGMQLA 385 (533)
T ss_pred CCEEEeCCCCCcCc---hHHHHHHHHHHHhcCCCEEEEchhHHHH
Confidence 89999999998643 3445677888888999999999999875
No 129
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=94.68 E-value=0.067 Score=44.61 Aligned_cols=56 Identities=20% Similarity=0.295 Sum_probs=37.2
Q ss_pred CCCCCCCCcCEEEEcCCCCh-hhhcc---ChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 54 FDEIDPTKYDGLVIPGGRAP-EYLAM---NDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 54 ~~~~~~~~~D~livpGG~~~-~~l~~---~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
++++...+||++||-|.+.- ..+.+ =+++.++++...++.+++.+||-|.++++.+
T Consensus 92 ~~~i~~~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~a 151 (302)
T PRK05368 92 FEDIKDEKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYH 151 (302)
T ss_pred HHHhccCCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence 44455578999999998632 11111 1234444444445689999999999998865
No 130
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=94.64 E-value=0.066 Score=50.86 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=33.8
Q ss_pred CCcCEEEEcCCCChhh-hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~~-l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
..||.|||-+|+|... ..+.....++|.+. .+.||.+||.|.+.|+.+
T Consensus 130 ~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~ 178 (918)
T PLN02889 130 KAFDNIVISPGPGSPTCPADIGICLRLLLEC--RDIPILGVCLGHQALGYV 178 (918)
T ss_pred cCCCEEEECCCCCCccchHHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHh
Confidence 4689999999988432 11112235555543 479999999999999886
No 131
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=94.60 E-value=0.12 Score=41.06 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=41.2
Q ss_pred CCCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 59 PTKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 59 ~~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
..+.|+|++.||.-.. .......+.+.|++.+++|.++++...|+.++...
T Consensus 81 l~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 81 LRDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMSDT 133 (217)
T ss_pred HHhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence 3578999999997532 23355678899999999999999999999998654
No 132
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=94.38 E-value=0.057 Score=42.44 Aligned_cols=51 Identities=18% Similarity=0.334 Sum_probs=38.2
Q ss_pred CCCcCEEEEcCCCChhh--hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 59 PTKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 59 ~~~~D~livpGG~~~~~--l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
..+.|+|+++||.-... ......+.+.|++.+++|+++++.|.|+.++...
T Consensus 78 l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 78 LLEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred HhhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence 46789999999975321 2233346666666677999999999999999984
No 133
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=94.37 E-value=0.054 Score=42.86 Aligned_cols=50 Identities=22% Similarity=0.371 Sum_probs=38.5
Q ss_pred CCcCEEEEcCCCChh-hh-ccC-hHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPE-YL-AMN-DSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~-~l-~~~-~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
+.||++++.||..-. .+ .++ ..-..-|+.....++|+.+||.|..+|..-
T Consensus 51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~y 103 (250)
T COG3442 51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQY 103 (250)
T ss_pred ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccce
Confidence 589999998886532 22 122 445678899999999999999999999764
No 134
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=94.09 E-value=0.036 Score=41.40 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=37.6
Q ss_pred CCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.+.|+|++.||.-.. .......+.+.|++.+++|+++++...|+.++...
T Consensus 34 ~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA~i~~~~ 85 (154)
T PF03575_consen 34 READAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGTSAGAMILGPS 85 (154)
T ss_dssp HHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHHHHCTSSB
T ss_pred HhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChHHhhccCc
Confidence 468999999997432 12345669999999999999999999999987554
No 135
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=93.58 E-value=0.16 Score=42.82 Aligned_cols=50 Identities=30% Similarity=0.491 Sum_probs=40.0
Q ss_pred CCcCEEEEcC-C-CCh-hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPG-G-RAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpG-G-~~~-~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
...|-||+|| | +|+ .+.....-..+-|++....|||+.+||-|-..|-..
T Consensus 38 ~~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF~g 90 (541)
T KOG0623|consen 38 LNADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIESGKPFMGICVGLQALFDG 90 (541)
T ss_pred ccCceEeecCcccchHHHHHHhhhhhHHHHHHHHhcCCCeEeehhhHHHHhcc
Confidence 4678999998 4 343 334467778899999999999999999999988654
No 136
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=93.21 E-value=0.11 Score=40.60 Aligned_cols=52 Identities=33% Similarity=0.539 Sum_probs=39.9
Q ss_pred CCCCcCEEEEcCCCC-h-hhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 58 DPTKYDGLVIPGGRA-P-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 58 ~~~~~D~livpGG~~-~-~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
+.+.||.++|.|... + .+...--.|..++++.....+.|++||-|-.++|++
T Consensus 56 Dl~ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara 109 (245)
T KOG3179|consen 56 DLEKYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARA 109 (245)
T ss_pred hhhhhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHh
Confidence 356799999998753 2 111122467788888888899999999999999987
No 137
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=92.50 E-value=0.25 Score=43.10 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=34.4
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 106 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lL 106 (195)
...|.|+||||+|.+- -+-.+...+.+.+++.|..+||.|.++.
T Consensus 362 ~~adGilvPGGFG~RG---veG~i~Aak~ARen~iP~LGiCLGmQ~A 405 (585)
T KOG2387|consen 362 KSADGILVPGGFGDRG---VEGKILAAKWARENKIPFLGICLGMQLA 405 (585)
T ss_pred ccCCeEEeCCcccccc---hhHHHHHHHHHHhcCCCeEeeehhhhHH
Confidence 3479999999998753 2334556677778999999999999874
No 138
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=91.97 E-value=0.15 Score=39.25 Aligned_cols=56 Identities=18% Similarity=0.324 Sum_probs=38.7
Q ss_pred CCCCCCCCCcCEEEEcCCCCh-hhh---ccChHHHHHHHHHHhCCCeEEEecHHHHHHHh
Q 029299 53 TFDEIDPTKYDGLVIPGGRAP-EYL---AMNDSVIDLVRKFSNSGKTIASICHGQLILAA 108 (195)
Q Consensus 53 ~~~~~~~~~~D~livpGG~~~-~~l---~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~ 108 (195)
+++++....||++||-|.+-- ..+ ..-+++.+.+....++.+.+..+|-|++..+.
T Consensus 54 ~~~~i~~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~ 113 (175)
T cd03131 54 TFDDIRDAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALY 113 (175)
T ss_pred CHHHccccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 455666688999999998631 111 11235666666666888999999999998544
No 139
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=91.49 E-value=0.3 Score=39.61 Aligned_cols=50 Identities=18% Similarity=0.344 Sum_probs=40.3
Q ss_pred CCCcCEEEEcCCCChh--hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHh
Q 029299 59 PTKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 108 (195)
Q Consensus 59 ~~~~D~livpGG~~~~--~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~ 108 (195)
..+.|+|++.||.-.. .......+.+.|++.+++|.++++...|+.++..
T Consensus 80 l~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~~ 131 (250)
T TIGR02069 80 LSNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMSD 131 (250)
T ss_pred HhhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhccc
Confidence 3578999999997432 2335667889999999999999999999997754
No 140
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=91.33 E-value=0.19 Score=39.66 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=40.4
Q ss_pred CCcCEEEEcCCCChhh--hccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCC
Q 029299 60 TKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 110 (195)
Q Consensus 60 ~~~D~livpGG~~~~~--l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aG 110 (195)
.+.|+|+|.||.-..- +....-+.+.||+.+++|++.++...|+.+-...+
T Consensus 83 ~~~d~IyVgGGNTF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia~p~I 135 (224)
T COG3340 83 MKADIIYVGGGNTFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIAGPTI 135 (224)
T ss_pred hhccEEEECCchHHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceeecCce
Confidence 4589999999875422 33556789999999999999999999998766554
No 141
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=91.06 E-value=0.4 Score=36.17 Aligned_cols=46 Identities=24% Similarity=0.280 Sum_probs=35.4
Q ss_pred CCCCCcCEEEEcCCCChhhhccChHHHHHHHHHHh--CCCeEEEecHHHH
Q 029299 57 IDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN--SGKTIASICHGQL 104 (195)
Q Consensus 57 ~~~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~--~~k~i~aic~G~~ 104 (195)
.+..+||+|||.. .......++.+.+||+++.+ ..+|.+.+|.+..
T Consensus 43 ~~l~~ydavVIgA--sI~~~h~~~~~~~Fv~k~~e~L~~kP~A~f~vnl~ 90 (175)
T COG4635 43 PALEDYDAVVIGA--SIRYGHFHEAVQSFVKKHAEALSTKPSAFFSVNLT 90 (175)
T ss_pred cChhhCceEEEec--chhhhhhHHHHHHHHHHHHHHHhcCCceEEEeehh
Confidence 4567899999944 33444567889999999887 5899999998654
No 142
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=90.82 E-value=1.5 Score=32.41 Aligned_cols=34 Identities=21% Similarity=0.430 Sum_probs=26.1
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEE
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIAS 98 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~a 98 (195)
.+|++||+|.-. ..+++..+.|+++.++|..+.+
T Consensus 52 ~~y~~vi~P~~~-----~~~~~~~~~l~~~v~~GG~li~ 85 (154)
T cd03143 52 SGYKLVVLPDLY-----LLSDATAAALRAYVENGGTLVA 85 (154)
T ss_pred ccCCEEEECchh-----cCCHHHHHHHHHHHHCCCEEEE
Confidence 479999999853 2356888999999998775554
No 143
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=89.77 E-value=0.85 Score=40.40 Aligned_cols=50 Identities=18% Similarity=0.411 Sum_probs=36.5
Q ss_pred CCcCEEEEcCCCCh-hhh--ccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAP-EYL--AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 60 ~~~D~livpGG~~~-~~l--~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
.+.|++|+||.... .++ ....-+-+-|.++.+++.+|.+||.|-++|.+.
T Consensus 289 ~~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~viGICGG~QmLG~~ 341 (486)
T COG1492 289 RDADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGGYQMLGRR 341 (486)
T ss_pred CCCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCEEEEcchHHhhhhh
Confidence 45899999998653 221 223334456777788899999999999999875
No 144
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=89.60 E-value=1.1 Score=35.06 Aligned_cols=59 Identities=25% Similarity=0.458 Sum_probs=32.3
Q ss_pred hHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccChHHH
Q 029299 4 FQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVI 83 (195)
Q Consensus 4 ~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~~l~ 83 (195)
|..|.+.|+.+|+++++. +..+|.+||+|.-. .-+++..
T Consensus 36 y~al~~~gi~vDvv~~~~------------------------------------dL~~Ykllv~P~~~-----~l~~~~~ 74 (207)
T PF08532_consen 36 YRALRELGIPVDVVSPDD------------------------------------DLSGYKLLVLPSLY-----ILSPEFA 74 (207)
T ss_dssp HHHHHTTT--EEEE-TTS--------------------------------------TT-SEEEES--S-----C--HHH-
T ss_pred HHHHHHcCCceEEecCcC------------------------------------CcccCcEEEEeeEE-----EEChHHH
Confidence 568889999999999852 12469999999843 3578888
Q ss_pred HHHHHHHhCCC-eEEEecHHH
Q 029299 84 DLVRKFSNSGK-TIASICHGQ 103 (195)
Q Consensus 84 ~~l~~~~~~~k-~i~aic~G~ 103 (195)
+.|+++.++|. +|++-.+|.
T Consensus 75 ~~L~~yV~~GG~li~~~~tg~ 95 (207)
T PF08532_consen 75 ERLRAYVENGGTLILTPRTGV 95 (207)
T ss_dssp --HHHHHT-SS-EEE-TTTT-
T ss_pred HHHHHHHHCCCEEEEEcccCC
Confidence 99999999865 455544443
No 145
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=87.23 E-value=1.3 Score=41.96 Aligned_cols=56 Identities=21% Similarity=0.327 Sum_probs=41.4
Q ss_pred CCCCCcCEEEEcCCCCh-----------hhhccChHHHHHHHHHHhCC-CeEEEecHHHHHHHhCCCC
Q 029299 57 IDPTKYDGLVIPGGRAP-----------EYLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAAADVV 112 (195)
Q Consensus 57 ~~~~~~D~livpGG~~~-----------~~l~~~~~l~~~l~~~~~~~-k~i~aic~G~~lLa~aGlL 112 (195)
...++|-.|+.+||+.- .....++.+..-..+|+++. ..-.+||+|..+++..|.+
T Consensus 1099 ~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~Lg~i 1166 (1320)
T KOG1907|consen 1099 HHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSRLGWI 1166 (1320)
T ss_pred eeHhHhcceeeecCcchHhhhccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHHHHHhccc
Confidence 34578999999999641 22446777777777777754 4566999999999998855
No 146
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=78.04 E-value=2.8 Score=33.32 Aligned_cols=45 Identities=22% Similarity=0.415 Sum_probs=34.1
Q ss_pred CcCEEEEcCCCChhh-hccChHHHHHHHHHHhCCCeEEEecHHHHH
Q 029299 61 KYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLI 105 (195)
Q Consensus 61 ~~D~livpGG~~~~~-l~~~~~l~~~l~~~~~~~k~i~aic~G~~l 105 (195)
.--+||+|||....+ ..-+....+.|....++|....+||.|...
T Consensus 49 ~T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~YF 94 (253)
T COG4285 49 TTLLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICAGGYF 94 (253)
T ss_pred ceEEEEecCCCCchHHHHhcchhhhhHHHHHhcCCeEEEEeccccc
Confidence 357899999976432 123455667888899999999999999865
No 147
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=76.84 E-value=4.9 Score=36.20 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=31.8
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhC--CCeEEEecHHHHHHHh
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNS--GKTIASICHGQLILAA 108 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~--~k~i~aic~G~~lLa~ 108 (195)
.-||+++|..|+|.. ..++-..++.+.+.. ..||.+||.|-..|+-
T Consensus 63 ~~FDaIVVgPGPG~P---~~a~d~gI~~rl~~~~~~iPilGICLGfQal~l 110 (767)
T KOG1224|consen 63 VAFDAIVVGPGPGSP---MCAADIGICLRLLLECRDIPILGICLGFQALGL 110 (767)
T ss_pred cccceEEecCCCCCC---CcHHHHHHHHHHHHhcCCCceeeeehhhHhHhh
Confidence 459999997777643 233444455555543 5999999999987764
No 148
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=75.64 E-value=20 Score=28.64 Aligned_cols=85 Identities=16% Similarity=0.206 Sum_probs=51.6
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEe---cCCCchHHH----HHCCC
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCT---AYPPVKPVL----IAAGA 132 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T---~~~~~~~~l----~~~g~ 132 (195)
+..|+++|.+. .+ ..+..+|+.+ .+|+.+||.++...|. +-|||++ +.+.....+ +.+|.
T Consensus 68 ~GvdaiiIaCf-------~D-Pgl~~~Re~~--~~PviGi~eAsv~~A~---~vgrrfsViTtt~rs~~il~~lv~~~g~ 134 (230)
T COG4126 68 QGVDAIIIACF-------SD-PGLAAARERA--AIPVIGICEASVLAAL---FVGRRFSVITTTERSRPILEELVRSYGL 134 (230)
T ss_pred cCCcEEEEEec-------CC-hHHHHHHHHh--CCCceehhHHHHHHHH---HhcceEEEEecCcccHHHHHHHHHhcCc
Confidence 46899999762 23 6788889888 8899999999988774 4577754 444444443 34443
Q ss_pred eeecCCCcceEEEcCCeEeCCCCCCHHH
Q 029299 133 SWIEPETMAACVVDGNIITGATYEGHPE 160 (195)
Q Consensus 133 ~~~~~~~~~~~v~Dg~iiT~~g~~~~~~ 160 (195)
...... ....|..+.+=-++.+-.+
T Consensus 135 s~~~~~---vrstdl~vL~l~~~~~~~~ 159 (230)
T COG4126 135 SRHCRS---VRSTDLPVLALEGPPEEAE 159 (230)
T ss_pred cccccc---eeeCCCCcccccCChHHHH
Confidence 222221 2344555555555444433
No 149
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=70.09 E-value=3.7 Score=33.47 Aligned_cols=35 Identities=14% Similarity=0.354 Sum_probs=25.5
Q ss_pred CCcCEEEEcCCCChh--h-------------hccChHHHHHHHHHHhCCC
Q 029299 60 TKYDGLVIPGGRAPE--Y-------------LAMNDSVIDLVRKFSNSGK 94 (195)
Q Consensus 60 ~~~D~livpGG~~~~--~-------------l~~~~~l~~~l~~~~~~~k 94 (195)
.++|+||+-||.|+- + +..+++.+++|++++.+.+
T Consensus 59 ~r~D~vI~tGGLGPT~DDiT~e~vAka~g~~lv~~~~al~~i~~~~~~r~ 108 (255)
T COG1058 59 ERADVVITTGGLGPTHDDLTAEAVAKALGRPLVLDEEALAMIEEKYAKRG 108 (255)
T ss_pred hCCCEEEECCCcCCCccHhHHHHHHHHhCCCcccCHHHHHHHHHHHHhcC
Confidence 459999999998862 1 3457788888888776533
No 150
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=68.74 E-value=21 Score=28.36 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=27.2
Q ss_pred CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHH
Q 029299 59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 103 (195)
Q Consensus 59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~ 103 (195)
+.+||+||.=+-.+...+ +++..+-|.++.++|+=++++=+|.
T Consensus 56 L~~~D~lV~~~~~~~~~l--~~eq~~~l~~~V~~GgGlv~lHsg~ 98 (215)
T cd03142 56 LAETDVLLWWGHIAHDEV--KDEIVERVHRRVLDGMGLIVLHSGH 98 (215)
T ss_pred HhcCCEEEEeCCCCcCcC--CHHHHHHHHHHHHcCCCEEEECCCc
Confidence 468999987432222222 4556667777888887777666554
No 151
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=67.01 E-value=9.3 Score=31.10 Aligned_cols=50 Identities=12% Similarity=0.288 Sum_probs=41.2
Q ss_pred CCCcCEEEEcCCCChhh--hccChHHHHHHHHHHhCCCeEEEecHHHHHHHh
Q 029299 59 PTKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 108 (195)
Q Consensus 59 ~~~~D~livpGG~~~~~--l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~ 108 (195)
....+.||+.||.-.+. ...+.++.+.|++.+++|..+++...|+.++..
T Consensus 104 v~~a~gIfftGGDQ~ri~~~lkdTpl~~~ir~r~r~G~avgGTSAGAavM~~ 155 (293)
T COG4242 104 VENATGIFFTGGDQLRIIGSLKDTPLMAAIRQRVRRGIAVGGTSAGAAVMSD 155 (293)
T ss_pred HHhCceEEEecCcceeeeeeccCCHHHHHHHHHHhcCceecccccchhhcCC
Confidence 35679999999965432 346889999999999999999999999998754
No 152
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=63.09 E-value=13 Score=30.13 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=29.4
Q ss_pred CCCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHH
Q 029299 58 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 104 (195)
Q Consensus 58 ~~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~ 104 (195)
++.++|++|+.||-|. +++.++.+...++||.+|-.|..
T Consensus 22 ~~~~~Dlvi~iGGDGT--------lL~a~~~~~~~~~PvlGIN~G~l 60 (246)
T PRK04761 22 PIEEADVIVALGGDGF--------MLQTLHRYMNSGKPVYGMNRGSV 60 (246)
T ss_pred CcccCCEEEEECCCHH--------HHHHHHHhcCCCCeEEEEeCCCC
Confidence 4567899999999664 45666776777888888887763
No 153
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=61.78 E-value=29 Score=25.41 Aligned_cols=49 Identities=20% Similarity=0.351 Sum_probs=33.9
Q ss_pred CCcCEEEEcCCCChhhh-ccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCC
Q 029299 60 TKYDGLVIPGGRAPEYL-AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADV 111 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l-~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGl 111 (195)
...|+|++-||...... ...+...+++.+. .++.+.++|- ..+..++|.
T Consensus 84 n~aDvvVLlGGLaMP~~gv~~d~~kel~ee~--~~kkliGvCf-m~mF~ragW 133 (154)
T COG4090 84 NSADVVVLLGGLAMPKIGVTPDDAKELLEEL--GNKKLIGVCF-MNMFERAGW 133 (154)
T ss_pred ccccEEEEEcccccCcCCCCHHHHHHHHHhc--CCCceEEeeH-HHHHHHcCc
Confidence 45899999999764332 2345677777733 3567999998 456788873
No 154
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=59.89 E-value=28 Score=26.63 Aligned_cols=65 Identities=17% Similarity=0.251 Sum_probs=43.0
Q ss_pred CCCCCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC----------CCCCCceEecCCCc
Q 029299 56 EIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA----------DVVKGRKCTAYPPV 123 (195)
Q Consensus 56 ~~~~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a----------GlL~g~~~T~~~~~ 123 (195)
++...+++-|++..|+|... +..--.+.++++. ...|+.++|.|-..+-++ +++.|+.--.|.+.
T Consensus 58 El~~~NP~~LliSPGPG~P~--DsGIs~~~i~~f~-~~iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D~ 132 (223)
T KOG0026|consen 58 ELKRKNPRGLLISPGPGTPQ--DSGISLQTVLELG-PLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDE 132 (223)
T ss_pred HHhhcCCCeEEecCCCCCCc--cccchHHHHHHhC-CCCceeeeehhhhhhhhhhCcEEeccCcceeeccccccccCC
Confidence 33345678888877776432 3444556666554 467899999999987664 46777766666554
No 155
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=57.36 E-value=12 Score=27.16 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=27.4
Q ss_pred CCCCcCEEEEcCCCChhhhccChHHHHHHHHHH--hCCCeEEEecHHH
Q 029299 58 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFS--NSGKTIASICHGQ 103 (195)
Q Consensus 58 ~~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~--~~~k~i~aic~G~ 103 (195)
+..+||.||+.++--.. .-.+.+.+||++.. -++++++.++.|.
T Consensus 40 ~~~~yD~vi~gspiy~g--~~~~~~~~fi~~~~~~l~~k~v~~f~~~~ 85 (143)
T PF12724_consen 40 DLSDYDAVIFGSPIYAG--RIPGEMREFIKKNKDNLKNKKVALFSVGG 85 (143)
T ss_pred ccccCCEEEEEEEEECC--cCCHHHHHHHHHHHHHHcCCcEEEEEEeC
Confidence 45789999996653222 23566888888654 3566666555543
No 156
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=57.18 E-value=4.3 Score=30.42 Aligned_cols=42 Identities=24% Similarity=0.386 Sum_probs=27.9
Q ss_pred CCCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecH
Q 029299 58 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 101 (195)
Q Consensus 58 ~~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~ 101 (195)
+..+||.||| |.+-+-. .-.+.+..||++..-+||.|+-.|+
T Consensus 70 d~~~YD~I~l-G~PvW~~-~~~~pv~tFL~~~~~~gK~v~~F~T 111 (156)
T PF12682_consen 70 DLSDYDTIFL-GTPVWWG-TPPPPVRTFLEQYDFSGKTVIPFCT 111 (156)
T ss_dssp -GGG-SEEEE-EEEEETT-EE-CHHHHHHHCTTTTTSEEEEEEE
T ss_pred CcccCCEEEE-echHHcC-CCCHHHHHHHHhcCCCCCcEEEEEe
Confidence 4578999998 3333221 2356789999988778998887776
No 157
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=55.91 E-value=14 Score=27.82 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=26.1
Q ss_pred CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecH
Q 029299 59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 101 (195)
Q Consensus 59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~ 101 (195)
..+||.|++..+ ...-.-++.++++|++.. +|.|+.+++
T Consensus 37 ~~~yD~i~lG~w--~d~G~~d~~~~~fl~~l~--~KkV~lF~T 75 (160)
T PF12641_consen 37 LEDYDLIFLGFW--IDKGTPDKDMKEFLKKLK--GKKVALFGT 75 (160)
T ss_pred CCCCCEEEEEcC--ccCCCCCHHHHHHHHHcc--CCeEEEEEe
Confidence 478999999544 332245788999999964 455554444
No 158
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=55.59 E-value=36 Score=26.50 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=29.1
Q ss_pred CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHH
Q 029299 59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 103 (195)
Q Consensus 59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~ 103 (195)
+.+||+||+....+.. -+++..+-|+++.++|+.++++..++
T Consensus 50 L~~~Dvvv~~~~~~~~---l~~~~~~al~~~v~~Ggglv~lH~~~ 91 (217)
T PF06283_consen 50 LKGYDVVVFYNTGGDE---LTDEQRAALRDYVENGGGLVGLHGAA 91 (217)
T ss_dssp HCT-SEEEEE-SSCCG---S-HHHHHHHHHHHHTT-EEEEEGGGG
T ss_pred hcCCCEEEEECCCCCc---CCHHHHHHHHHHHHcCCCEEEEcccc
Confidence 4789999998765311 36778888999999999999998433
No 159
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=55.32 E-value=58 Score=22.87 Aligned_cols=69 Identities=23% Similarity=0.234 Sum_probs=36.0
Q ss_pred hHHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccChHHH
Q 029299 4 FQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVI 83 (195)
Q Consensus 4 ~~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~~l~ 83 (195)
+..|.+.|++|..+.|..+. -.| +..-.++++. +...|.++|.- ......
T Consensus 20 ~~~l~~~G~~v~~Vnp~~~~-------------------i~G--~~~y~sl~e~-p~~iDlavv~~--------~~~~~~ 69 (116)
T PF13380_consen 20 LRNLKAAGYEVYPVNPKGGE-------------------ILG--IKCYPSLAEI-PEPIDLAVVCV--------PPDKVP 69 (116)
T ss_dssp HHHHHHTT-EEEEESTTCSE-------------------ETT--EE-BSSGGGC-SST-SEEEE-S---------HHHHH
T ss_pred HHHHHhCCCEEEEECCCceE-------------------ECc--EEeeccccCC-CCCCCEEEEEc--------CHHHHH
Confidence 56788899999999997642 112 2233445542 46788888742 233455
Q ss_pred HHHHHHHhCCCeEEEecHH
Q 029299 84 DLVRKFSNSGKTIASICHG 102 (195)
Q Consensus 84 ~~l~~~~~~~k~i~aic~G 102 (195)
+++++..+.|..-+-+..|
T Consensus 70 ~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 70 EIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp HHHHHHHHHT-SEEEE-TT
T ss_pred HHHHHHHHcCCCEEEEEcc
Confidence 5666655555443333333
No 160
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=55.02 E-value=12 Score=31.21 Aligned_cols=53 Identities=30% Similarity=0.473 Sum_probs=34.5
Q ss_pred CCCCCCCCCcCEEEEcCCCCh----hhhccChHHHHHHHHHHhCCCeEEEecHHHHH
Q 029299 53 TFDEIDPTKYDGLVIPGGRAP----EYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 105 (195)
Q Consensus 53 ~~~~~~~~~~D~livpGG~~~----~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~l 105 (195)
+++++....||++||-|.+-- +....=+++.+++....++.....-+|-|+..
T Consensus 90 ~~~~i~~~~~DglIITGAPvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqA 146 (298)
T PF04204_consen 90 TFDEIKDRKFDGLIITGAPVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQA 146 (298)
T ss_dssp -HHHCTTS-EEEEEE---TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHH
T ss_pred CHHHHhhCCCCEEEEeCCCcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHH
Confidence 455566678999999997631 22222357777777777788889999999987
No 161
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=54.50 E-value=20 Score=27.23 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=29.0
Q ss_pred CCCcCEEEEcCCCChhhhccChHHHHHHHHHHh--CCCeEEEecHH
Q 029299 59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN--SGKTIASICHG 102 (195)
Q Consensus 59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~--~~k~i~aic~G 102 (195)
..+||.||+.++-... ...+.+..||++... ++|+++.+|.|
T Consensus 44 l~~yD~vIlGspi~~G--~~~~~~~~fl~~~~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 44 LSDYDRVVIGASIRYG--HFHSALYKFVKKHATQLNQMPSAFFSVN 87 (177)
T ss_pred HHHCCEEEEECccccC--CcCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 4679998886543222 235778888877543 68888888887
No 162
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=53.94 E-value=7.4 Score=34.32 Aligned_cols=52 Identities=17% Similarity=0.335 Sum_probs=34.8
Q ss_pred ccCCCCCCCCCcCEEEEcCCCChh----hhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhC
Q 029299 51 NATFDEIDPTKYDGLVIPGGRAPE----YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 109 (195)
Q Consensus 51 ~~~~~~~~~~~~D~livpGG~~~~----~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~a 109 (195)
+.+...+....|-.+|+.||+-.- .-.-++.+ ++-+.++.+||.|.++++..
T Consensus 49 ~t~~~~i~~~~~rgiIiSGGP~SVya~dAP~~dp~i-------f~~~vpvLGICYGmQ~i~~~ 104 (552)
T KOG1622|consen 49 TTPAKTITEYGPRGIIISGGPNSVYAEDAPSFDPAI-------FELGVPVLGICYGMQLINKL 104 (552)
T ss_pred CChhhhhhcCCceEEEEeCCCCccccCcCCCCChhH-------hccCCcceeehhHHHHHHHH
Confidence 344444444578899999996421 11234444 44579999999999999873
No 163
>PRK06242 flavodoxin; Provisional
Probab=50.82 E-value=23 Score=25.61 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=28.5
Q ss_pred CCCcCEEEEcCCCChhhhccChHHHHHHHHHHh-CCCeEEEecHHHH
Q 029299 59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN-SGKTIASICHGQL 104 (195)
Q Consensus 59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~-~~k~i~aic~G~~ 104 (195)
..+||.|++... ...-.-.+.+..||.+... ++|+++.+|++.+
T Consensus 41 ~~~~d~ii~g~p--vy~~~~~~~~~~fl~~~~~~~~k~~~~f~t~g~ 85 (150)
T PRK06242 41 LSEYDLIGFGSG--IYFGKFHKSLLKLIEKLPPVSGKKAFIFSTSGL 85 (150)
T ss_pred HhHCCEEEEeCc--hhcCCcCHHHHHHHHhhhhhcCCeEEEEECCCC
Confidence 468999988542 1111235678888877644 6888888877643
No 164
>PF01058 Oxidored_q6: NADH ubiquinone oxidoreductase, 20 Kd subunit; InterPro: IPR006137 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 20 kDa (in mammals) [], which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 4Fe-4S iron-sulphur cluster. The 20 kDa subunit has been found to be nuclear encoded, as a precursor form with a transit peptide in mammals, and in Neurospora crassa. It is and chloroplast encoded in various higher plants (gene ndhK or psbG).; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0048038 quinone binding, 0051539 4 iron, 4 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 3MYR_E 3RGW_S 2FUG_F 3IAS_6 3I9V_F 3IAM_F 2YBB_6 3M9S_F 2FRV_G 1YQ9_B ....
Probab=49.98 E-value=21 Score=25.74 Aligned_cols=41 Identities=10% Similarity=0.225 Sum_probs=32.6
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 104 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~ 104 (195)
.+.|++||=|+--. .+....++++++.++.|.|.++++=+.
T Consensus 44 ~~~diliVeG~v~~----~~~~~~e~~~~~~~~a~~vIAvGtCA~ 84 (131)
T PF01058_consen 44 EEADILIVEGSVPR----NMEEALEWLKELRPKAKAVIAVGTCAS 84 (131)
T ss_dssp TTTEEEEEESBEET----GGEEHHHHHHHHHGCSSEEEEEHHHHH
T ss_pred cCceEEEEEeeccC----CchHHHHHHHHHccCCceeEcCCCccc
Confidence 47899999886421 346789999999999999999988554
No 165
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=49.44 E-value=51 Score=22.95 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=31.4
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 103 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~ 103 (195)
.+-|.+|+.+-.| +++++.++++.+.++|.++.+++...
T Consensus 46 ~~~d~vi~iS~sG-----~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 46 TPGDVVIAISNSG-----ETDELLNLLPHLKRRGAPIIAITGNP 84 (128)
T ss_pred CCCCEEEEEeCCC-----CCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4568888887543 57889999999999999999988743
No 166
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=48.13 E-value=13 Score=27.61 Aligned_cols=48 Identities=27% Similarity=0.352 Sum_probs=33.3
Q ss_pred CcCEEEEcCCCChhhhc-cChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCC
Q 029299 61 KYDGLVIPGGRAPEYLA-MNDSVIDLVRKFSNSGKTIASICHGQLILAAADV 111 (195)
Q Consensus 61 ~~D~livpGG~~~~~l~-~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGl 111 (195)
+.|+|++-||....... ..+++.+++.+....+ +.+||- .-++.++|.
T Consensus 80 ~~D~vVlmGGLAMP~~~v~~e~v~~li~ki~~~~--iiGiCF-ms~F~kagW 128 (147)
T PF09897_consen 80 HPDVVVLMGGLAMPKSGVTPEDVNELIKKISPKK--IIGICF-MSMFEKAGW 128 (147)
T ss_dssp -EEEEEEEGGGGSTTTS--HHHHHHHHHHHEEEE--EEEEEE-TTHHHHTTH
T ss_pred CCCEEEEEcccccCCCCCCHHHHHHHHHHhCcCC--EEEEeh-HHHHHHcCC
Confidence 48999999997643322 3456778888777555 889998 446777774
No 167
>PRK09271 flavodoxin; Provisional
Probab=47.64 E-value=86 Score=23.17 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=23.1
Q ss_pred CCcCEEEEcCC-CChhhhc-cChHHHHHHHHHHhCCCeEEEecHH
Q 029299 60 TKYDGLVIPGG-RAPEYLA-MNDSVIDLVRKFSNSGKTIASICHG 102 (195)
Q Consensus 60 ~~~D~livpGG-~~~~~l~-~~~~l~~~l~~~~~~~k~i~aic~G 102 (195)
.++|+|+|... .+...+. .-..+.+.|.....++|.++.+++|
T Consensus 50 ~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avfgsg 94 (160)
T PRK09271 50 EDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVFGTG 94 (160)
T ss_pred ccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 57899998652 2211111 1123444444444467878877776
No 168
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=46.91 E-value=32 Score=24.80 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=28.3
Q ss_pred CCCcCEEEEcCC-CChhhhccChHHHHHHHHHHhCCCeEEEecHH
Q 029299 59 PTKYDGLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 102 (195)
Q Consensus 59 ~~~~D~livpGG-~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G 102 (195)
..+||.|++... ++... ..+.+..++++...++|.++.+++|
T Consensus 48 ~~~~d~iilgs~t~~~g~--~p~~~~~fl~~l~~~~k~~avfgtg 90 (140)
T TIGR01754 48 PENYDLVFLGTWTWERGR--TPDEMKDFIAELGYKPSNVAIFGTG 90 (140)
T ss_pred hhhCCEEEEEcCeeCCCc--CCHHHHHHHHHhcccCCEEEEEEcC
Confidence 457999988653 22221 2346788888776688888888766
No 169
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.65 E-value=80 Score=26.34 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=27.9
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecH-HHH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH-GQL 104 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~-G~~ 104 (195)
..+|++|+.||.|. +++.++.+...++|+.+|-. |..
T Consensus 56 ~~~d~vi~~GGDGT--------~l~~~~~~~~~~~pv~gin~~G~l 93 (305)
T PRK02645 56 ELIDLAIVLGGDGT--------VLAAARHLAPHDIPILSVNVGGHL 93 (305)
T ss_pred cCcCEEEEECCcHH--------HHHHHHHhccCCCCEEEEecCCcc
Confidence 46899999999764 44566666677899999987 653
No 170
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=46.55 E-value=59 Score=27.35 Aligned_cols=48 Identities=25% Similarity=0.346 Sum_probs=36.5
Q ss_pred CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHh
Q 029299 59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 108 (195)
Q Consensus 59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~ 108 (195)
..+.|+|++.|.. |..+ ......+|++...++++.++--|+|..+.+.
T Consensus 127 l~~~d~VvlsGSl-P~g~-~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~ 174 (310)
T COG1105 127 LESDDIVVLSGSL-PPGV-PPDAYAELIRILRQQGAKVILDTSGEALLAA 174 (310)
T ss_pred cccCCEEEEeCCC-CCCC-CHHHHHHHHHHHHhcCCeEEEECChHHHHHH
Confidence 4678988887753 3222 4566788999999999999999999998753
No 171
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.52 E-value=29 Score=28.33 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=26.0
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 103 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~ 103 (195)
.++|++|+.||-|. +++.++.+...++|+.+|-.|.
T Consensus 32 ~~~D~vi~iGGDGT--------~L~a~~~~~~~~iPilGIN~G~ 67 (259)
T PRK00561 32 DGADYLFVLGGDGF--------FVSTAANYNCAGCKVVGINTGH 67 (259)
T ss_pred CCCCEEEEECCcHH--------HHHHHHHhcCCCCcEEEEecCC
Confidence 56899999999764 4455566666777777777764
No 172
>PRK05568 flavodoxin; Provisional
Probab=46.48 E-value=73 Score=22.70 Aligned_cols=43 Identities=12% Similarity=0.079 Sum_probs=23.9
Q ss_pred CCCcCEEEEcCCCChhhhccChHHHHHHHHHH--hCCCeEEEecH
Q 029299 59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFS--NSGKTIASICH 101 (195)
Q Consensus 59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~--~~~k~i~aic~ 101 (195)
..+||.|++...--.........+..++.+.. .++|.++.+++
T Consensus 46 ~~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~~~~~k~~~~f~t 90 (142)
T PRK05568 46 VKGADVVALGSPAMGDEVLEEGEMEPFVESISSLVKGKKLVLFGS 90 (142)
T ss_pred HHhCCEEEEECCccCcccccchhHHHHHHHhhhhhCCCEEEEEEc
Confidence 36899998855321111111234556665543 26788887777
No 173
>PRK06934 flavodoxin; Provisional
Probab=46.16 E-value=17 Score=28.96 Aligned_cols=42 Identities=24% Similarity=0.300 Sum_probs=31.0
Q ss_pred CCCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecH
Q 029299 58 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 101 (195)
Q Consensus 58 ~~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~ 101 (195)
+..+||.||| |.+-+-. .-.+.+..||.+..-.||.|+-+|+
T Consensus 126 dl~~YD~I~I-G~PIWwg-~~P~~V~tFLe~~d~~GK~I~pF~T 167 (221)
T PRK06934 126 NLADYDQIFI-GYPIWWY-KMPMVMYSFFEQHDFSGKTLIPFTT 167 (221)
T ss_pred hHHhCCEEEE-Ecchhhc-cccHHHHHHHHhcCCCCCEEEEEEe
Confidence 3468999988 3333221 2367789999998889999999997
No 174
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=46.04 E-value=1.1e+02 Score=22.71 Aligned_cols=69 Identities=14% Similarity=0.074 Sum_probs=38.9
Q ss_pred HHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccChHHHH
Q 029299 5 QALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVID 84 (195)
Q Consensus 5 ~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~~l~~ 84 (195)
..|.+.|++|.+++|.-.+ .+..-....+ ....+.+.+..++|+||.+- +++++..
T Consensus 30 ~~Ll~~ga~V~VIsp~~~~---------------~l~~l~~i~~-~~~~~~~~dl~~a~lViaaT--------~d~e~N~ 85 (157)
T PRK06719 30 SGLKDTGAFVTVVSPEICK---------------EMKELPYITW-KQKTFSNDDIKDAHLIYAAT--------NQHAVNM 85 (157)
T ss_pred HHHHhCCCEEEEEcCccCH---------------HHHhccCcEE-EecccChhcCCCceEEEECC--------CCHHHHH
Confidence 4677899999999875321 0111111222 23344444567788877742 4566666
Q ss_pred HHHHHHhCCCeEE
Q 029299 85 LVRKFSNSGKTIA 97 (195)
Q Consensus 85 ~l~~~~~~~k~i~ 97 (195)
.+.+..+++.++-
T Consensus 86 ~i~~~a~~~~~vn 98 (157)
T PRK06719 86 MVKQAAHDFQWVN 98 (157)
T ss_pred HHHHHHHHCCcEE
Confidence 7766666554433
No 175
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=46.04 E-value=58 Score=26.32 Aligned_cols=72 Identities=15% Similarity=0.176 Sum_probs=41.0
Q ss_pred CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCC-eEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecC
Q 029299 59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGK-TIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEP 137 (195)
Q Consensus 59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k-~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~ 137 (195)
++++|+|||+|-..+ -.+.-...|.++..+|. .+..+.....-+.. ...... ...+...+.|+++|..+.+.
T Consensus 195 P~~~d~Lvi~~P~~~----ls~~e~~~l~~yl~~GG~ll~~~d~~~~~~~~--~~~~~~-~~~~~L~~lL~~~Gi~~~~~ 267 (271)
T PF09822_consen 195 PDDADVLVIAGPKTD----LSEEELYALDQYLMNGGKLLILLDPFSVELQG--LWAGGA-QRDSNLNDLLEEYGIRINPG 267 (271)
T ss_pred CCCCCEEEEECCCCC----CCHHHHHHHHHHHHcCCeEEEEECCccccccc--cccccc-ccccCHHHHHHHcCCEeCCC
Confidence 478999999874321 25556677777777654 45554444222111 111111 11566777888888776655
No 176
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=45.40 E-value=40 Score=26.05 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=30.0
Q ss_pred CCCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecH
Q 029299 58 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 101 (195)
Q Consensus 58 ~~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~ 101 (195)
++.++|+++|-|.... .....++.+.++.++-|.|.++++
T Consensus 72 sPR~ADillVeG~VT~----~m~~~l~~~~e~~p~pK~VIAvGa 111 (181)
T PRK14817 72 SPRQADLLMVVGTVNC----KQAPILQRVYEQMADPKWVMAFGV 111 (181)
T ss_pred CCcceeEEEEEecCCc----cchHHHHHHHHHcccCCEEEEecc
Confidence 4678999999886422 234577888888899999988754
No 177
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=44.91 E-value=16 Score=30.43 Aligned_cols=53 Identities=23% Similarity=0.423 Sum_probs=36.9
Q ss_pred CCCCCCCCCcCEEEEcCCCCh----hhhccChHHHHHHHHHHhCCCeEEEecHHHHH
Q 029299 53 TFDEIDPTKYDGLVIPGGRAP----EYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 105 (195)
Q Consensus 53 ~~~~~~~~~~D~livpGG~~~----~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~l 105 (195)
+|+++....||++||-|.+-- +....=+++.+++...-++..-..-+|-|++.
T Consensus 91 ~f~~ik~~~fDGlIITGAPvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqA 147 (300)
T TIGR01001 91 TFEAVKDRKFDGLIITGAPVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQA 147 (300)
T ss_pred CHHHHhcCCCCEEEEcCCCcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 455565688999999997631 11222256777777777777778889999886
No 178
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=44.71 E-value=70 Score=22.51 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=23.7
Q ss_pred CCcCEEEEcCCC-ChhhhccChHHHHHHHHHH---hCCCeEEEecHHH
Q 029299 60 TKYDGLVIPGGR-APEYLAMNDSVIDLVRKFS---NSGKTIASICHGQ 103 (195)
Q Consensus 60 ~~~D~livpGG~-~~~~l~~~~~l~~~l~~~~---~~~k~i~aic~G~ 103 (195)
.++|.||+...- +..... ++.+..|+.+.. -++|.++.+++|.
T Consensus 44 ~~~d~iilgspty~~g~~p-~~~~~~f~~~l~~~~~~gk~~~vfgt~g 90 (140)
T TIGR01753 44 LSYDAVLLGCSTWGDEDLE-QDDFEPFFEELEDIDLGGKKVALFGSGD 90 (140)
T ss_pred hcCCEEEEEcCCCCCCCCC-cchHHHHHHHhhhCCCCCCEEEEEecCC
Confidence 468988885532 211111 245556655543 3577777777653
No 179
>PF09558 DUF2375: Protein of unknown function (DUF2375); InterPro: IPR014271 Two members of this family are found in Colwellia psychrerythraea (strain 34H / ATCC BAA-681) and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by IPR013424 from INTERPRO.
Probab=42.93 E-value=15 Score=23.52 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=15.5
Q ss_pred HHHHHhCCCeEEEecHHHH
Q 029299 86 VRKFSNSGKTIASICHGQL 104 (195)
Q Consensus 86 l~~~~~~~k~i~aic~G~~ 104 (195)
|-+.+++||.|.++|.|-.
T Consensus 39 iP~~Fr~GKsIiAVleGe~ 57 (71)
T PF09558_consen 39 IPQSFRRGKSIIAVLEGEC 57 (71)
T ss_pred ChHHHcCCceEEEEEcCce
Confidence 3456789999999999854
No 180
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=41.60 E-value=92 Score=26.21 Aligned_cols=88 Identities=22% Similarity=0.347 Sum_probs=47.8
Q ss_pred CeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCC--CCCCcCEEEEcCCCChhhhccChHHHHHHHHH
Q 029299 12 VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEI--DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKF 89 (195)
Q Consensus 12 ~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~--~~~~~D~livpGG~~~~~l~~~~~l~~~l~~~ 89 (195)
+.|.++||.....+. ++..... .-+...-|.++++..++.+. ...+...|||.||.|.... -..+.+.|++.
T Consensus 228 ~NvRIAtPPp~~~~~-PpG~mSS---yi~sLKpGDKvtisGPfGEfFaKdtdaemvFigGGAGmapm--RSHIfDqL~rl 301 (410)
T COG2871 228 LNVRIATPPPRNPDA-PPGQMSS---YIWSLKPGDKVTISGPFGEFFAKDTDAEMVFIGGGAGMAPM--RSHIFDQLKRL 301 (410)
T ss_pred EEEEeccCCCCCCCC-Cccceee---eEEeecCCCeEEEeccchhhhhccCCCceEEEecCcCcCch--HHHHHHHHHhh
Confidence 689999985322121 1110000 12333567788887777543 3356778999998875421 23455666665
Q ss_pred HhCCCeEEEecHHHHHHH
Q 029299 90 SNSGKTIASICHGQLILA 107 (195)
Q Consensus 90 ~~~~k~i~aic~G~~lLa 107 (195)
+.+.| .+...|+--+-
T Consensus 302 hSkRk--is~WYGARS~r 317 (410)
T COG2871 302 HSKRK--ISFWYGARSLR 317 (410)
T ss_pred cccce--eeeeeccchHH
Confidence 54444 34555554443
No 181
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=41.43 E-value=47 Score=25.63 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=29.7
Q ss_pred CCCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecH
Q 029299 58 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 101 (195)
Q Consensus 58 ~~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~ 101 (195)
++.++|+++|-|.... .....++.++++..+-|++.++++
T Consensus 70 sPR~aDillVeG~VT~----~m~~~l~~~~e~~p~pk~VIAvGa 109 (180)
T PRK14820 70 SPRQADMLMVMGTIAK----KMAPVLKQVYLQMAEPRWVVAVGA 109 (180)
T ss_pred CCccceEEEEEecCCc----ccHHHHHHHHHhcCCCCeEEEEec
Confidence 4678999999886422 236677777888889999988754
No 182
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=41.33 E-value=1e+02 Score=20.89 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=35.9
Q ss_pred HHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccChHHHH
Q 029299 5 QALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVID 84 (195)
Q Consensus 5 ~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~~l~~ 84 (195)
..|.+.|++|.+++|.... .....++. ...+. -+..++|+||++.+ ++.+.+
T Consensus 24 ~~Ll~~gA~v~vis~~~~~------------------~~~~i~~~-~~~~~-~~l~~~~lV~~at~--------d~~~n~ 75 (103)
T PF13241_consen 24 RLLLEAGAKVTVISPEIEF------------------SEGLIQLI-RREFE-EDLDGADLVFAATD--------DPELNE 75 (103)
T ss_dssp HHHCCCTBEEEEEESSEHH------------------HHTSCEEE-ESS-G-GGCTTESEEEE-SS---------HHHHH
T ss_pred HHHHhCCCEEEEECCchhh------------------hhhHHHHH-hhhHH-HHHhhheEEEecCC--------CHHHHH
Confidence 5678899999999997300 00111222 11222 12467898888653 556666
Q ss_pred HHHHHHh-CCCeEE
Q 029299 85 LVRKFSN-SGKTIA 97 (195)
Q Consensus 85 ~l~~~~~-~~k~i~ 97 (195)
.|.+..+ ++.++-
T Consensus 76 ~i~~~a~~~~i~vn 89 (103)
T PF13241_consen 76 AIYADARARGILVN 89 (103)
T ss_dssp HHHHHHHHTTSEEE
T ss_pred HHHHHHhhCCEEEE
Confidence 6666665 566554
No 183
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=41.07 E-value=48 Score=25.65 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=28.2
Q ss_pred CCCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecH
Q 029299 58 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 101 (195)
Q Consensus 58 ~~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~ 101 (195)
++.++|+++|-|.... .....++.+.++..+-|+|.++++
T Consensus 71 sPr~aDvllV~G~vt~----~~~~~l~~~~e~mp~pk~VIA~Ga 110 (183)
T PRK06411 71 SPRQADLMIVAGTLTN----KMAPALRRLYDQMPEPKWVISMGS 110 (183)
T ss_pred CCCceeEEEEEeCCCc----cchHHHHHHHHHcCcCCeEEEEec
Confidence 3567999999987532 235566666677778898888754
No 184
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=37.38 E-value=97 Score=28.88 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=30.0
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHH-HHHhCCCC
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL-ILAAADVV 112 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~-lLa~aGlL 112 (195)
.+||+||+....+.+.+ .+.++.....+.++++|+.++. .|.+.|+-
T Consensus 54 ~~yd~iIFTS~nAV~~~------~~~l~~~~~~~~~i~AVG~~Ta~aL~~~Gi~ 101 (656)
T PRK06975 54 SDYALVVFVSPNAVDRA------LARLDAIWPHALPVAVVGPGSVAALARHGIA 101 (656)
T ss_pred CCCCEEEEECHHHHHHH------HHHHHhhCccCCeEEEECHHHHHHHHHcCCC
Confidence 58999999987776542 1222222335677888888877 45555653
No 185
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.13 E-value=53 Score=27.25 Aligned_cols=37 Identities=32% Similarity=0.408 Sum_probs=28.7
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 104 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~ 104 (195)
.++|++|+.||-|. +++..+.+...++||.+|-.|..
T Consensus 63 ~~~Dlvi~iGGDGT--------~L~aa~~~~~~~~PilGIN~G~l 99 (287)
T PRK14077 63 KISDFLISLGGDGT--------LISLCRKAAEYDKFVLGIHAGHL 99 (287)
T ss_pred cCCCEEEEECCCHH--------HHHHHHHhcCCCCcEEEEeCCCc
Confidence 36899999998664 45666777777889999988873
No 186
>PRK05569 flavodoxin; Provisional
Probab=34.66 E-value=1e+02 Score=21.96 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=24.8
Q ss_pred CCCcCEEEEcCC-CChhhhccChHHHHHHHHHH---hCCCeEEEecHH
Q 029299 59 PTKYDGLVIPGG-RAPEYLAMNDSVIDLVRKFS---NSGKTIASICHG 102 (195)
Q Consensus 59 ~~~~D~livpGG-~~~~~l~~~~~l~~~l~~~~---~~~k~i~aic~G 102 (195)
..++|.|++... ++... ...+.+..++.... -++|.++.++++
T Consensus 46 ~~~~d~iilgsPty~~~~-~~~~~~~~~~~~l~~~~~~~K~v~~f~t~ 92 (141)
T PRK05569 46 VLEADAVAFGSPSMDNNN-IEQEEMAPFLDQFKLTPNENKKCILFGSY 92 (141)
T ss_pred HhhCCEEEEECCCcCCCc-CChHHHHHHHHHhhccCcCCCEEEEEeCC
Confidence 357999999543 11111 11245566666553 367888888763
No 187
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=34.46 E-value=86 Score=23.28 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=24.0
Q ss_pred CCCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecH
Q 029299 58 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 101 (195)
Q Consensus 58 ~~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~ 101 (195)
++.+.|+++|-|.-... ..+.++-+.++.++.|.|.++++
T Consensus 54 sPr~aDvllVtG~vt~~----~~~~l~~~~e~~p~pk~VIA~Gs 93 (145)
T TIGR01957 54 SPRQADVMIVAGTVTKK----MAPALRRLYDQMPEPKWVISMGA 93 (145)
T ss_pred CCCcceEEEEecCCcHH----HHHHHHHHHHhccCCceEEEecc
Confidence 35679999998864322 22333334444456888887754
No 188
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=33.53 E-value=42 Score=27.74 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=53.8
Q ss_pred HHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccChHHHH
Q 029299 5 QALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVID 84 (195)
Q Consensus 5 ~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~~l~~ 84 (195)
..|.++|++|.++-|+..-.+..- |+ ...+.|.++..|..- .+.-.+..+||-|=|...- .+.+
T Consensus 38 iefAeAGHDVVLaePn~d~~dd~~--------w~-~vedAGV~vv~dD~e-aa~~~Ei~VLFTPFGk~T~------~Iar 101 (340)
T COG4007 38 IEFAEAGHDVVLAEPNRDIMDDEH--------WK-RVEDAGVEVVSDDAE-AAEHGEIHVLFTPFGKATF------GIAR 101 (340)
T ss_pred HHHHHcCCcEEeecCCccccCHHH--------HH-HHHhcCcEEecCchh-hhhcceEEEEecccchhhH------HHHH
Confidence 468999999999999864322211 11 223567777665533 2333567777777664321 2445
Q ss_pred HHHHHHhCCCeEEEecHHHHH
Q 029299 85 LVRKFSNSGKTIASICHGQLI 105 (195)
Q Consensus 85 ~l~~~~~~~k~i~aic~G~~l 105 (195)
-|-.+.+.|.+|+-.|+-+-+
T Consensus 102 ei~~hvpEgAVicnTCT~sp~ 122 (340)
T COG4007 102 EILEHVPEGAVICNTCTVSPV 122 (340)
T ss_pred HHHhhCcCCcEecccccCchh
Confidence 566678889999999987654
No 189
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.21 E-value=60 Score=26.96 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=28.4
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 104 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~ 104 (195)
.++|++|+.||-|. +++..+.+...+.||.+|-.|..
T Consensus 63 ~~~dlvi~lGGDGT--------~L~aa~~~~~~~~PilGIN~G~l 99 (292)
T PRK01911 63 GSADMVISIGGDGT--------FLRTATYVGNSNIPILGINTGRL 99 (292)
T ss_pred cCCCEEEEECCcHH--------HHHHHHHhcCCCCCEEEEecCCC
Confidence 35899999999664 45666667777889999888874
No 190
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=33.14 E-value=1.2e+02 Score=20.92 Aligned_cols=38 Identities=8% Similarity=0.061 Sum_probs=29.9
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 102 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G 102 (195)
.+-|++|+..-.| +.+++.+.++.+.++|.++.+|+..
T Consensus 45 ~~~d~~I~iS~sG-----~t~e~~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 45 DEDTLVIAISQSG-----ETADTLAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred CCCcEEEEEeCCc-----CCHHHHHHHHHHHHcCCeEEEEECC
Confidence 4568888766433 5677999999999999999998874
No 191
>cd00587 HCP_like The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-beta rossman fold domain. HCP, formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. Acetyl-CoA synthase (ACS), is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide and CoA.
Probab=32.50 E-value=1.4e+02 Score=24.43 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=38.6
Q ss_pred CEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCC
Q 029299 63 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKG 114 (195)
Q Consensus 63 D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g 114 (195)
-++.|.|-..++ ..+....++.++.-+++..|.....+.+-++++|+.++
T Consensus 96 Gv~~ivGC~n~~--~~~~~~~~iakeL~k~d~LVlt~GC~a~~l~k~gl~~~ 145 (258)
T cd00587 96 GVALIVGCNNDK--KQDKAYADIAKELMKRGVMVLATGCAAEALLKLGLEDG 145 (258)
T ss_pred eEEEEEeCCCCC--ccchHHHHHHHHHHhCCEEEEecchHHHHHHhcCCccc
Confidence 344555544443 35677889999999999999988888999999998877
No 192
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=32.00 E-value=2.1e+02 Score=21.24 Aligned_cols=38 Identities=26% Similarity=0.348 Sum_probs=30.6
Q ss_pred CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecH
Q 029299 59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 101 (195)
Q Consensus 59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~ 101 (195)
..+-|++|+....| ..+++.+.++.+.++|.++.+|+.
T Consensus 70 ~~~~Dv~I~iS~sG-----~t~~~i~~~~~ak~~g~~ii~IT~ 107 (179)
T TIGR03127 70 IKKGDLLIAISGSG-----ETESLVTVAKKAKEIGATVAAITT 107 (179)
T ss_pred CCCCCEEEEEeCCC-----CcHHHHHHHHHHHHCCCeEEEEEC
Confidence 35678888877543 567899999999999999999886
No 193
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.97 E-value=63 Score=27.08 Aligned_cols=37 Identities=8% Similarity=0.232 Sum_probs=28.0
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 104 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~ 104 (195)
.+.|++|+.||-|. +++..+.+...+.||.+|-.|..
T Consensus 71 ~~~D~vi~lGGDGT--------~L~aar~~~~~~~PilGIN~G~l 107 (306)
T PRK03372 71 DGCELVLVLGGDGT--------ILRAAELARAADVPVLGVNLGHV 107 (306)
T ss_pred cCCCEEEEEcCCHH--------HHHHHHHhccCCCcEEEEecCCC
Confidence 35899999999664 45566666777888888887764
No 194
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.75 E-value=65 Score=26.51 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=26.7
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 103 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~ 103 (195)
.++|++|+.||-|. +++..+.+...+.||.+|-.|.
T Consensus 41 ~~~d~vi~iGGDGT--------~L~aa~~~~~~~~PilgIn~G~ 76 (272)
T PRK02231 41 QRAQLAIVIGGDGN--------MLGRARVLAKYDIPLIGINRGN 76 (272)
T ss_pred cCCCEEEEECCcHH--------HHHHHHHhccCCCcEEEEeCCC
Confidence 35899999999664 4455666666788888887774
No 195
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=31.70 E-value=1.3e+02 Score=18.94 Aligned_cols=35 Identities=11% Similarity=0.117 Sum_probs=27.1
Q ss_pred CcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEec
Q 029299 61 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASIC 100 (195)
Q Consensus 61 ~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic 100 (195)
+=|++++..-.| ..+++.+.+++..++|.++.+++
T Consensus 47 ~~d~~i~iS~sg-----~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 47 KGDVVIALSYSG-----RTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCEEEEEECCC-----CCHHHHHHHHHHHHcCCeEEEEe
Confidence 457777765432 36778899999999999999998
No 196
>PRK07116 flavodoxin; Provisional
Probab=31.23 E-value=45 Score=24.70 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=26.4
Q ss_pred CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecH
Q 029299 59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 101 (195)
Q Consensus 59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~ 101 (195)
..+||.|++.. +-.. -...+.+..||++..-.+|+++.+|+
T Consensus 74 l~~~D~Iiig~-Pv~~-~~~p~~v~~fl~~~~l~~k~v~~f~T 114 (160)
T PRK07116 74 IAEYDVIFLGF-PIWW-YVAPRIINTFLESYDFSGKTVIPFAT 114 (160)
T ss_pred HHhCCEEEEEC-Chhc-cccHHHHHHHHHhcCCCCCEEEEEEe
Confidence 35799988843 2211 12355688898876666787777766
No 197
>TIGR02922 conserved hypothetical protein TIGR02922. Two members of this family are found in Colwellia psychrerythraea 34H and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by TIGR02595.
Probab=31.09 E-value=29 Score=21.84 Aligned_cols=17 Identities=29% Similarity=0.727 Sum_probs=13.9
Q ss_pred HHHhCCCeEEEecHHHH
Q 029299 88 KFSNSGKTIASICHGQL 104 (195)
Q Consensus 88 ~~~~~~k~i~aic~G~~ 104 (195)
+-+++||-|.++|.|-.
T Consensus 39 qeFkrGKsIiAV~EGe~ 55 (67)
T TIGR02922 39 QEFKRGKSIIAVCEGEI 55 (67)
T ss_pred hHHcCCCeEEEEEecce
Confidence 45688999999999854
No 198
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=29.97 E-value=1.5e+02 Score=21.78 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=30.8
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 101 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~ 101 (195)
.+-|++|+....| .++++.+.++.+.++|.++.+|+.
T Consensus 78 ~~~D~~i~iS~sG-----~t~~~~~~~~~a~~~g~~ii~iT~ 114 (154)
T TIGR00441 78 QKGDVLLGISTSG-----NSKNVLKAIEAAKDKGMKTITLAG 114 (154)
T ss_pred CCCCEEEEEcCCC-----CCHHHHHHHHHHHHCCCEEEEEeC
Confidence 4568888887654 577899999999999999999987
No 199
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=29.92 E-value=93 Score=24.17 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=26.1
Q ss_pred CCCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecH
Q 029299 58 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 101 (195)
Q Consensus 58 ~~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~ 101 (195)
++.++|+++|-|.... ...+.+.-+.++..+-|+|.++++
T Consensus 70 sPR~ADvllVtG~VT~----~m~~~l~~~yeqmp~pk~VIAvGs 109 (186)
T PRK14814 70 SPRQADMILVLGTITY----KMAPVLRQIYDQMAEPKFVISVGA 109 (186)
T ss_pred CcccceEEEEeccCch----hhHHHHHHHHHhcCCCCeEEEecc
Confidence 4578999999885322 233455555556667888887754
No 200
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=29.55 E-value=86 Score=23.70 Aligned_cols=34 Identities=15% Similarity=0.318 Sum_probs=23.1
Q ss_pred CCcCEEEEcCCCChh--h-------------hccChHHHHHHHHHHhCC
Q 029299 60 TKYDGLVIPGGRAPE--Y-------------LAMNDSVIDLVRKFSNSG 93 (195)
Q Consensus 60 ~~~D~livpGG~~~~--~-------------l~~~~~l~~~l~~~~~~~ 93 (195)
.++|+||+.||.|+. + +..++++.+.|++++.+.
T Consensus 57 ~~~dlVIttGG~G~t~~D~t~ea~~~~~~~~l~~~~e~~~~i~~~~~~~ 105 (170)
T cd00885 57 ERADLVITTGGLGPTHDDLTREAVAKAFGRPLVLDEEALERIEARFARR 105 (170)
T ss_pred hCCCEEEECCCCCCCCCChHHHHHHHHhCCCcccCHHHHHHHHHHHHhc
Confidence 468999999997642 1 234667777777776543
No 201
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=29.48 E-value=1.1e+02 Score=20.32 Aligned_cols=11 Identities=27% Similarity=0.604 Sum_probs=7.2
Q ss_pred CCcCEEEEcCC
Q 029299 60 TKYDGLVIPGG 70 (195)
Q Consensus 60 ~~~D~livpGG 70 (195)
..+|+++|-|.
T Consensus 34 ~~~daiVvtG~ 44 (80)
T PF03698_consen 34 QNVDAIVVTGQ 44 (80)
T ss_pred CCcCEEEEECC
Confidence 45777777664
No 202
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.44 E-value=72 Score=26.71 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=28.6
Q ss_pred CcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHHH
Q 029299 61 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 105 (195)
Q Consensus 61 ~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~l 105 (195)
+.|++|+.||-|. +++..+.+...++||.+|-.|..-
T Consensus 68 ~~Dlvi~iGGDGT--------lL~aar~~~~~~iPilGIN~G~lG 104 (305)
T PRK02649 68 SMKFAIVLGGDGT--------VLSAARQLAPCGIPLLTINTGHLG 104 (305)
T ss_pred CcCEEEEEeCcHH--------HHHHHHHhcCCCCcEEEEeCCCCc
Confidence 5799999999764 456667777778899999887653
No 203
>PRK03673 hypothetical protein; Provisional
Probab=29.39 E-value=73 Score=27.75 Aligned_cols=33 Identities=21% Similarity=0.456 Sum_probs=25.6
Q ss_pred CCcCEEEEcCCCCh--hh-------------hccChHHHHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAP--EY-------------LAMNDSVIDLVRKFSNS 92 (195)
Q Consensus 60 ~~~D~livpGG~~~--~~-------------l~~~~~l~~~l~~~~~~ 92 (195)
.++|+||+-||.|+ ++ +..+++..+.|++++++
T Consensus 59 ~~~DlVI~tGGlGpt~dD~t~~avA~a~g~~L~~d~e~~~~i~~~f~~ 106 (396)
T PRK03673 59 QHADVLIVNGGLGPTSDDLSALAAATAAGEGLVLHEEWLAEMERFFAE 106 (396)
T ss_pred ccCCEEEEcCCCCCCCcccHHHHHHHHcCCCceeCHHHHHHHHHHHHh
Confidence 57899999999764 11 34688899999988865
No 204
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=29.38 E-value=1e+02 Score=23.88 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=27.3
Q ss_pred CCCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecH
Q 029299 58 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 101 (195)
Q Consensus 58 ~~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~ 101 (195)
++.++|+++|-|.... ...+.++-+.++.++-|++.++++
T Consensus 70 SPR~ADillVtG~VT~----~m~~~l~r~ye~~p~pK~VIAvGs 109 (183)
T PRK14815 70 SPRQADVMIVAGTVTY----KMALAVRRIYDQMPEPKWVIAMGA 109 (183)
T ss_pred CCccccEEEEeCcCch----hhHHHHHHHHHhCCCCCEEEEecc
Confidence 4577999999885322 233455666667788898888754
No 205
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=28.95 E-value=1.5e+02 Score=23.06 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=25.0
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 101 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~ 101 (195)
+++|++||-|| + ..+.++++.-++.+.|..+.+-+.
T Consensus 101 ~~~daiFIGGg-~-----~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 101 PSPDAIFIGGG-G-----NIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred CCCCEEEECCC-C-----CHHHHHHHHHHHcCcCCeEEEEee
Confidence 47999999887 3 245577777777777666665443
No 206
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=28.50 E-value=1.1e+02 Score=24.31 Aligned_cols=38 Identities=8% Similarity=0.283 Sum_probs=28.8
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 101 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~ 101 (195)
.++|+++|=|.-.. ++....+.+++..++-|.|.++.+
T Consensus 49 ~~~dil~VeG~i~~----~~~~~~~~~~~~~~~ak~vVA~Gt 86 (228)
T TIGR03294 49 PEMDVALVEGSVCL----QDEHSLEEIKELREKAKVVVALGA 86 (228)
T ss_pred CCccEEEEeCCCCC----CccHHHHHHHHHhccCCEEEEeec
Confidence 56899999886522 344578899999999999988754
No 207
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=28.47 E-value=1.7e+02 Score=22.02 Aligned_cols=22 Identities=14% Similarity=0.007 Sum_probs=17.0
Q ss_pred HHHHhCCCeEEEeCCCCCCCCC
Q 029299 5 QALLAFGVSVDAACPGKKSGDV 26 (195)
Q Consensus 5 ~~l~~~G~~v~~~s~~~~~~~~ 26 (195)
..|.+.|++|.+=|.+.-|+-+
T Consensus 77 ~~Le~~g~~V~~qSTTRSPI~~ 98 (155)
T PF12500_consen 77 EELEQAGADVRYQSTTRSPILP 98 (155)
T ss_pred HHHHhcCCceEEeCCCCCCcee
Confidence 3577889999999998877443
No 208
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.30 E-value=91 Score=25.51 Aligned_cols=37 Identities=16% Similarity=0.375 Sum_probs=27.3
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHh--CCCeEEEecHHHH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN--SGKTIASICHGQL 104 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~--~~k~i~aic~G~~ 104 (195)
.++|++|+-||.|. +++.++.+.. .+.|+.+|-.|..
T Consensus 34 ~~~Dlvi~iGGDGT--------~L~a~~~~~~~~~~iPilGIN~G~l 72 (265)
T PRK04885 34 KNPDIVISVGGDGT--------LLSAFHRYENQLDKVRFVGVHTGHL 72 (265)
T ss_pred cCCCEEEEECCcHH--------HHHHHHHhcccCCCCeEEEEeCCCc
Confidence 46899999999664 4455666655 5888888888765
No 209
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.63 E-value=77 Score=26.08 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=25.6
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 104 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~ 104 (195)
.++|++|+.||.|. +++.++ ....+.||.+|-.|..
T Consensus 56 ~~~d~vi~iGGDGT--------lL~a~~-~~~~~~pi~gIn~G~l 91 (277)
T PRK03708 56 MDVDFIIAIGGDGT--------ILRIEH-KTKKDIPILGINMGTL 91 (277)
T ss_pred cCCCEEEEEeCcHH--------HHHHHH-hcCCCCeEEEEeCCCC
Confidence 36899999998764 334455 5556888888887763
No 210
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.43 E-value=91 Score=25.91 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=26.9
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 103 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~ 103 (195)
.+.|++|+.||.|. +++..+.+...+.||.+|-.|.
T Consensus 62 ~~~d~vi~lGGDGT--------~L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 62 QQADLAIVVGGDGN--------MLGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred CCCCEEEEECCcHH--------HHHHHHHhcCCCCeEEEEECCC
Confidence 36899999999764 4455566666678888888887
No 211
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.38 E-value=88 Score=26.04 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=26.8
Q ss_pred CcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHH
Q 029299 61 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 103 (195)
Q Consensus 61 ~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~ 103 (195)
+.|++|+.||-|. +++..+.+...++||.+|-.|.
T Consensus 68 ~~D~vi~lGGDGT--------~L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 68 YCDLVAVLGGDGT--------FLSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred CCCEEEEECCcHH--------HHHHHHHhcccCCCEEEEecCC
Confidence 5899999999764 4455666666788888888876
No 212
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=27.32 E-value=85 Score=26.03 Aligned_cols=37 Identities=27% Similarity=0.506 Sum_probs=26.3
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 104 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~ 104 (195)
..+|++|+.||.|. +++.++.+...+.|+.+|-.|..
T Consensus 62 ~~~d~vi~~GGDGt--------~l~~~~~~~~~~~pilGIn~G~l 98 (291)
T PRK02155 62 ARADLAVVLGGDGT--------MLGIGRQLAPYGVPLIGINHGRL 98 (291)
T ss_pred cCCCEEEEECCcHH--------HHHHHHHhcCCCCCEEEEcCCCc
Confidence 36899999999764 34555655566778888877763
No 213
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=26.94 E-value=3e+02 Score=21.31 Aligned_cols=71 Identities=13% Similarity=0.119 Sum_probs=37.8
Q ss_pred HHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccChHHHH
Q 029299 5 QALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVID 84 (195)
Q Consensus 5 ~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~~l~~ 84 (195)
..|.++|++|.+++|.-.+ . +. .......+.+. ...+...+..++|+||.+- .++++..
T Consensus 27 ~~Ll~~ga~V~VIs~~~~~--~----l~------~l~~~~~i~~~-~~~~~~~~l~~adlViaaT--------~d~elN~ 85 (202)
T PRK06718 27 ITLLKYGAHIVVISPELTE--N----LV------KLVEEGKIRWK-QKEFEPSDIVDAFLVIAAT--------NDPRVNE 85 (202)
T ss_pred HHHHHCCCeEEEEcCCCCH--H----HH------HHHhCCCEEEE-ecCCChhhcCCceEEEEcC--------CCHHHHH
Confidence 4678899999999985311 0 00 00011112221 2233333456788776642 4566667
Q ss_pred HHHHHHhCCCeE
Q 029299 85 LVRKFSNSGKTI 96 (195)
Q Consensus 85 ~l~~~~~~~k~i 96 (195)
.|.+..++++++
T Consensus 86 ~i~~~a~~~~lv 97 (202)
T PRK06718 86 QVKEDLPENALF 97 (202)
T ss_pred HHHHHHHhCCcE
Confidence 777666666543
No 214
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=26.93 E-value=1.3e+02 Score=21.65 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=24.9
Q ss_pred CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEe
Q 029299 59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASI 99 (195)
Q Consensus 59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~ai 99 (195)
..+=|+||+....| +++.+++.++.+.++|-.+.++
T Consensus 101 ~~~gDvli~iS~SG-----~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 101 IRPGDVLIVISNSG-----NSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp --TT-EEEEEESSS------SHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCCEEEEECCCC-----CCHHHHHHHHHHHHCCCEEEEE
Confidence 35668888876544 5678899999999999888876
No 215
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=26.56 E-value=1.8e+02 Score=27.32 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=34.7
Q ss_pred CCCcCEEEEcCCCCh----hhhccChHHHHHHHHHHhCCCeEEEecHHH
Q 029299 59 PTKYDGLVIPGGRAP----EYLAMNDSVIDLVRKFSNSGKTIASICHGQ 103 (195)
Q Consensus 59 ~~~~D~livpGG~~~----~~l~~~~~l~~~l~~~~~~~k~i~aic~G~ 103 (195)
+++.|+||=.|..+. .....++.+...|+++.++|.-+.+++.-.
T Consensus 498 ~~didViIN~G~a~ta~SGG~~W~d~~~~~aLr~fV~~GGglIGVgDps 546 (719)
T TIGR02336 498 DSDIDVIINGGDADTAWSGGDVWTNPKLVETVRAWVRGGGGFVGVGEPS 546 (719)
T ss_pred CcCCcEEEecCcccccccCccccCCHHHHHHHHHHHHcCCeEEEEECCc
Confidence 467898888886432 123568999999999999998888888743
No 216
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=26.48 E-value=2.5e+02 Score=22.37 Aligned_cols=74 Identities=12% Similarity=0.067 Sum_probs=41.5
Q ss_pred HHHHhCCCeEEEeCCCCCCCCCCCccccCCCCccccccccCcceeeccCCCCCCCCCcCEEEEcCCCChhhhccChHHHH
Q 029299 5 QALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVID 84 (195)
Q Consensus 5 ~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~l~~~~~l~~ 84 (195)
..|.++|.+|+++||.-.+ .+ +.....+.+++.. ..+..-+...++.||.+- +++++.+
T Consensus 42 ~~Ll~~gA~VtVVap~i~~------el------~~l~~~~~i~~~~-r~~~~~dl~g~~LViaAT--------dD~~vN~ 100 (223)
T PRK05562 42 KTFLKKGCYVYILSKKFSK------EF------LDLKKYGNLKLIK-GNYDKEFIKDKHLIVIAT--------DDEKLNN 100 (223)
T ss_pred HHHHhCCCEEEEEcCCCCH------HH------HHHHhCCCEEEEe-CCCChHHhCCCcEEEECC--------CCHHHHH
Confidence 4678899999999997432 00 0011112233321 233333345677666642 5778888
Q ss_pred HHHHHHhC-CCeEEEe
Q 029299 85 LVRKFSNS-GKTIASI 99 (195)
Q Consensus 85 ~l~~~~~~-~k~i~ai 99 (195)
.|.+.+++ +.++-.+
T Consensus 101 ~I~~~a~~~~~lvn~v 116 (223)
T PRK05562 101 KIRKHCDRLYKLYIDC 116 (223)
T ss_pred HHHHHHHHcCCeEEEc
Confidence 88887765 5555543
No 217
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=26.45 E-value=1e+02 Score=25.47 Aligned_cols=40 Identities=8% Similarity=0.076 Sum_probs=25.2
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 104 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~ 104 (195)
..+|.|||.- +.. ...+..+.|+.....+.+|..+-+|.-
T Consensus 69 ~~~D~viv~v----K~~-~~~~al~~l~~~l~~~t~vv~lQNGv~ 108 (305)
T PRK05708 69 EPIHRLLLAC----KAY-DAEPAVASLAHRLAPGAELLLLQNGLG 108 (305)
T ss_pred cccCEEEEEC----CHH-hHHHHHHHHHhhCCCCCEEEEEeCCCC
Confidence 5789998863 211 233455666666666777777777753
No 218
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=25.92 E-value=45 Score=20.80 Aligned_cols=13 Identities=31% Similarity=0.710 Sum_probs=11.1
Q ss_pred CCCeEEEecHHHH
Q 029299 92 SGKTIASICHGQL 104 (195)
Q Consensus 92 ~~k~i~aic~G~~ 104 (195)
+++.++++|.|-.
T Consensus 9 ~~~~i~GVcaGlA 21 (61)
T PF04024_consen 9 DDRVIAGVCAGLA 21 (61)
T ss_pred CCCEEeeeHHHHH
Confidence 5799999999864
No 219
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=25.91 E-value=1.4e+02 Score=23.18 Aligned_cols=40 Identities=13% Similarity=0.136 Sum_probs=25.6
Q ss_pred CCCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecH
Q 029299 58 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 101 (195)
Q Consensus 58 ~~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~ 101 (195)
++...|+++|-|.... .....+.-+.++.++-|+|.++++
T Consensus 78 sPRhADvllVtG~VT~----~m~~~l~~~~e~~p~pK~VIAvGs 117 (182)
T PRK14816 78 SPRQADMIMVCGTITN----KMAPVLKRLYDQMADPKYVIAVGG 117 (182)
T ss_pred CCCcceEEEEecCCcc----hhHHHHHHHHHhcCCCCEEEEecc
Confidence 3567999999875322 223344455556678888887754
No 220
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=25.71 E-value=1.8e+02 Score=25.87 Aligned_cols=67 Identities=19% Similarity=0.239 Sum_probs=37.2
Q ss_pred HHHHhCCCeEEEeCCCCCCCCCCCccccCCCCc-------cccccccCcceee------ccCCCCCCCCCcCEEEEcCCC
Q 029299 5 QALLAFGVSVDAACPGKKSGDVCPTAVHQSTGH-------QTYSETRGHNFAL------NATFDEIDPTKYDGLVIPGGR 71 (195)
Q Consensus 5 ~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~-------~~v~~~~g~~i~~------~~~~~~~~~~~~D~livpGG~ 71 (195)
..|.++|+.|.+.--...++-...-.++.+.-. -.+....|+++.. +.+++++ ..+||++++.+|.
T Consensus 140 ~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~~~L-~~e~Dav~l~~G~ 218 (457)
T COG0493 140 DDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDITLEEL-LKEYDAVFLATGA 218 (457)
T ss_pred HHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCCHHHH-HHhhCEEEEeccc
Confidence 468899999999876544422211112221111 1222344565553 4444444 3689999999986
Q ss_pred C
Q 029299 72 A 72 (195)
Q Consensus 72 ~ 72 (195)
+
T Consensus 219 ~ 219 (457)
T COG0493 219 G 219 (457)
T ss_pred c
Confidence 4
No 221
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=25.47 E-value=2.3e+02 Score=19.54 Aligned_cols=38 Identities=13% Similarity=0.210 Sum_probs=29.5
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 102 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G 102 (195)
.+-|++|+....| +.+++.+.++.+.++|.++.+++..
T Consensus 42 ~~~dl~I~iS~SG-----~t~e~i~~~~~a~~~g~~iI~IT~~ 79 (119)
T cd05017 42 DRKTLVIAVSYSG-----NTEETLSAVEQAKERGAKIVAITSG 79 (119)
T ss_pred CCCCEEEEEECCC-----CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4568888876543 5677889999999999999998853
No 222
>PRK03094 hypothetical protein; Provisional
Probab=25.37 E-value=1.5e+02 Score=19.71 Aligned_cols=14 Identities=36% Similarity=0.147 Sum_probs=8.6
Q ss_pred HHHHhCCCeEEEeC
Q 029299 5 QALLAFGVSVDAAC 18 (195)
Q Consensus 5 ~~l~~~G~~v~~~s 18 (195)
+.|++.||+|.-+.
T Consensus 15 ~~L~~~GYeVv~l~ 28 (80)
T PRK03094 15 QALKQKGYEVVQLR 28 (80)
T ss_pred HHHHHCCCEEEecC
Confidence 35666777766554
No 223
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=25.19 E-value=60 Score=26.64 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=27.1
Q ss_pred CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHH
Q 029299 59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 103 (195)
Q Consensus 59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~ 103 (195)
..++|++|+.||-|. ++...+.+...+.||.+|-.|.
T Consensus 74 ~~~~D~ii~lGGDGT--------~L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 74 EEGVDLIIVLGGDGT--------FLRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp CCCSSEEEEEESHHH--------HHHHHHHCTTST-EEEEEESSS
T ss_pred ccCCCEEEEECCCHH--------HHHHHHHhccCCCcEEeecCCC
Confidence 468999999998654 4455666666788999988765
No 224
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=25.15 E-value=2.1e+02 Score=19.88 Aligned_cols=38 Identities=8% Similarity=0.170 Sum_probs=29.4
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 102 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G 102 (195)
.+-|++|+....| +++++.+.++.+.++|.++.+++..
T Consensus 46 ~~~dl~I~iS~SG-----~t~~~~~~~~~a~~~g~~vi~iT~~ 83 (120)
T cd05710 46 TEKSVVILASHSG-----NTKETVAAAKFAKEKGATVIGLTDD 83 (120)
T ss_pred CCCcEEEEEeCCC-----CChHHHHHHHHHHHcCCeEEEEECC
Confidence 3458888876543 5678899999999999999988863
No 225
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=25.14 E-value=79 Score=25.10 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=28.1
Q ss_pred CcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHH
Q 029299 61 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 104 (195)
Q Consensus 61 ~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~ 104 (195)
+||.-++|-...+....-++.+.+.|++..++.+...+|.+|--
T Consensus 9 D~DGTL~~~~~~p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~ 52 (244)
T TIGR00685 9 DYDGTLSEIVPDPDAAVVSDRLLTILQKLAARPHNAIWIISGRK 52 (244)
T ss_pred ecCccccCCcCCCcccCCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 56666666443333223467888888888887776666666653
No 226
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=24.98 E-value=1.1e+02 Score=25.15 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=29.2
Q ss_pred CCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHH
Q 029299 59 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 104 (195)
Q Consensus 59 ~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~ 104 (195)
.+.+|++++-||.|. ++...+.+.+.+.++.+|-.|..
T Consensus 53 ~~~~d~ivvlGGDGt--------lL~~~~~~~~~~~pilgin~G~l 90 (281)
T COG0061 53 EEKADLIVVLGGDGT--------LLRAARLLARLDIPVLGINLGHL 90 (281)
T ss_pred ccCceEEEEeCCcHH--------HHHHHHHhccCCCCEEEEeCCCc
Confidence 367899999887553 56677778888889999988843
No 227
>PRK03670 competence damage-inducible protein A; Provisional
Probab=24.88 E-value=1.1e+02 Score=24.95 Aligned_cols=32 Identities=28% Similarity=0.576 Sum_probs=24.1
Q ss_pred CcCEEEEcCCCCh--h-------------hhccChHHHHHHHHHHhC
Q 029299 61 KYDGLVIPGGRAP--E-------------YLAMNDSVIDLVRKFSNS 92 (195)
Q Consensus 61 ~~D~livpGG~~~--~-------------~l~~~~~l~~~l~~~~~~ 92 (195)
.+|+||+-||.|+ + .+..+++..+.|++++++
T Consensus 60 ~~DlVIttGGlGpt~dD~T~eava~a~g~~l~~~~e~~~~i~~~~~~ 106 (252)
T PRK03670 60 KPEVLVISGGLGPTHDDVTMLAVAEALGRELVLCEDCLERIKEFYEE 106 (252)
T ss_pred CCCEEEECCCccCCCCCchHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 5899999999764 1 134678889999888754
No 228
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=24.71 E-value=1.6e+02 Score=23.93 Aligned_cols=36 Identities=14% Similarity=0.369 Sum_probs=29.5
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 101 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~ 101 (195)
++.|+++|=|+- .+++-++.+++..++.|.+.|+.+
T Consensus 50 PEvDValVEGsV------~~ee~lE~v~ElRekakivVA~Gs 85 (247)
T COG1941 50 PEVDVALVEGSV------CDEEELELVKELREKAKIVVALGS 85 (247)
T ss_pred CcccEEEEeccc------CcHHHHHHHHHHHHhCcEEEEEec
Confidence 558999998864 277788999999999999887655
No 229
>PLN02929 NADH kinase
Probab=24.48 E-value=1e+02 Score=25.83 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=26.8
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 103 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~ 103 (195)
.+.|++|+.||-|. ++...+.+ ..++||.+|-.|+
T Consensus 63 ~~~Dlvi~lGGDGT--------~L~aa~~~-~~~iPvlGIN~Gp 97 (301)
T PLN02929 63 RDVDLVVAVGGDGT--------LLQASHFL-DDSIPVLGVNSDP 97 (301)
T ss_pred CCCCEEEEECCcHH--------HHHHHHHc-CCCCcEEEEECCC
Confidence 57899999999765 33445555 6789999999984
No 230
>PF10034 Dpy19: Q-cell neuroblast polarisation; InterPro: IPR018732 This entry represents the Dpy-19 protein from Caenorhabditis elegans and its homologues in other Metazoa, including mammals. In C. elegans, Dpy-19 is required to orient neuroblasts QL and QR correctly on the anterior/posterior (A/P) axis. These neuroblasts are born in the same A/P position, but polarise and migrate left/right asymmetrically, where QL migrates toward the posterior and QR migrates toward the anterior. After their migrations, QL (but not QR) switches on the Hox gene mab-5. Dpy-19 is required along with Unc-40 to express Mab-5 correctly in the Q cell descendants []. A mammalian dpy-19 homologue was found to be expressed in GABAergic neurons []. The mammalian homologue of Mab-5 is the Gsh2 homeobox transcription factor, which plays a crucial role in the development of GABAergic neurons. ; GO: 0016021 integral to membrane
Probab=24.25 E-value=37 Score=31.53 Aligned_cols=45 Identities=11% Similarity=0.266 Sum_probs=34.7
Q ss_pred cChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchH
Q 029299 78 MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKP 125 (195)
Q Consensus 78 ~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~ 125 (195)
+..++++||++.-+.+.+.+| ...++|.-.|-.|+++|-||..++
T Consensus 504 d~~eL~~WIk~nt~~~AvFAG---sM~lma~vkL~T~r~ivnHPhYEd 548 (642)
T PF10034_consen 504 DTEELMEWIKSNTPPDAVFAG---SMPLMASVKLCTGRPIVNHPHYED 548 (642)
T ss_pred CHHHHHHHHHhcCCCCCeecc---CcchHHHHHHhcCCccccCcccCC
Confidence 346899999988887765553 355778788889999999998643
No 231
>PRK13055 putative lipid kinase; Reviewed
Probab=24.07 E-value=47 Score=27.90 Aligned_cols=16 Identities=19% Similarity=0.038 Sum_probs=10.3
Q ss_pred HHHHhCCCeEEEeCCC
Q 029299 5 QALLAFGVSVDAACPG 20 (195)
Q Consensus 5 ~~l~~~G~~v~~~s~~ 20 (195)
..|.+.|+++++..++
T Consensus 27 ~~l~~~g~~~~i~~t~ 42 (334)
T PRK13055 27 DILEQAGYETSAFQTT 42 (334)
T ss_pred HHHHHcCCeEEEEEee
Confidence 3567788877765443
No 232
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=23.63 E-value=1.7e+02 Score=22.42 Aligned_cols=41 Identities=15% Similarity=0.326 Sum_probs=24.2
Q ss_pred CCCcCEEEEcCCCChhhh---ccChHHHHHHHHHHhCCCeEEEec
Q 029299 59 PTKYDGLVIPGGRAPEYL---AMNDSVIDLVRKFSNSGKTIASIC 100 (195)
Q Consensus 59 ~~~~D~livpGG~~~~~l---~~~~~l~~~l~~~~~~~k~i~aic 100 (195)
..+||+||+-. .++..+ ...+.-++.|+++.++|.-+..+.
T Consensus 65 L~~yD~vIl~d-v~~~~ll~~~~~~~~~~~l~~yV~~GGgLlmig 108 (177)
T PF07090_consen 65 LNRYDVVILSD-VPANSLLKSRRSPNQLELLADYVRDGGGLLMIG 108 (177)
T ss_dssp HCT-SEEEEES---HHHHHT----HHHHHHHHHHHHTT-EEEEE-
T ss_pred HhcCCEEEEeC-CCchhcccccCCHHHHHHHHHHHHhCCEEEEEe
Confidence 47899999944 344433 235677889999998887766543
No 233
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=23.17 E-value=2.5e+02 Score=23.35 Aligned_cols=73 Identities=15% Similarity=0.080 Sum_probs=46.7
Q ss_pred cChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEcCCeEeCCCCCC
Q 029299 78 MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEG 157 (195)
Q Consensus 78 ~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~ 157 (195)
..+++.+.++...+++.++.-+..|+-+|..-+-++|.-+...-. + ..+..+++.+++.++..
T Consensus 44 ~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g~~gvVI~l~~~----~-------------~~i~~~~~~v~v~AG~~ 106 (302)
T PRK14652 44 DPDALSALLRAVRELGVPLSILGGGANTLVADAGVRGVVLRLPQD----F-------------PGESTDGGRLVLGAGAP 106 (302)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCCEeeEEEEecCC----c-------------ceEEecCCEEEEECCCc
Confidence 345678888878888999999999998764332222221111000 0 11445667888888888
Q ss_pred HHHHHHHHHH
Q 029299 158 HPEFIRLFLK 167 (195)
Q Consensus 158 ~~~~~l~li~ 167 (195)
..++..++.+
T Consensus 107 ~~~L~~~~~~ 116 (302)
T PRK14652 107 ISRLPARAHA 116 (302)
T ss_pred HHHHHHHHHH
Confidence 8888888776
No 234
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=23.14 E-value=4.1e+02 Score=22.87 Aligned_cols=72 Identities=15% Similarity=0.275 Sum_probs=48.9
Q ss_pred cChHHHHHHHHHHhCCCeEEEecHHHHHHHhCCCCCCceEecCCCchHHHHHCCCeeecCCCcceEEEc--CCeEeCCCC
Q 029299 78 MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVD--GNIITGATY 155 (195)
Q Consensus 78 ~~~~l~~~l~~~~~~~k~i~aic~G~~lLa~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~D--g~iiT~~g~ 155 (195)
+.+++.+.++...+++.++.-++.|+-+|..-+-++|.-+.+.. . .+.++ +..++++++
T Consensus 41 s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g~~GvVI~l~~---------------~----~i~i~~~~~~v~vgAG 101 (363)
T PRK13903 41 STEELVAAVRELDAAGEPLLVLGGGSNLVIADDGFDGTVVRVAT---------------R----GVTVDCGGGLVRAEAG 101 (363)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCCccEEEEEeCC---------------C----cEEEeCCCCEEEEEcC
Confidence 44678888888888899999999999887554434443222110 0 13334 678888888
Q ss_pred CCHHHHHHHHHHH
Q 029299 156 EGHPEFIRLFLKA 168 (195)
Q Consensus 156 ~~~~~~~l~li~~ 168 (195)
....+++.+..+.
T Consensus 102 ~~~~~l~~~a~~~ 114 (363)
T PRK13903 102 AVWDDVVARTVEA 114 (363)
T ss_pred CCHHHHHHHHHHc
Confidence 8888888888763
No 235
>PRK00549 competence damage-inducible protein A; Provisional
Probab=23.08 E-value=1.2e+02 Score=26.51 Aligned_cols=33 Identities=15% Similarity=0.445 Sum_probs=25.0
Q ss_pred CCcCEEEEcCCCCh--hh-------------hccChHHHHHHHHHHhC
Q 029299 60 TKYDGLVIPGGRAP--EY-------------LAMNDSVIDLVRKFSNS 92 (195)
Q Consensus 60 ~~~D~livpGG~~~--~~-------------l~~~~~l~~~l~~~~~~ 92 (195)
.++|+||+-||.|+ ++ +..+++..++|++++++
T Consensus 58 ~~~DlVItTGGlGpt~dD~t~ea~a~~~g~~l~~~~~~~~~i~~~~~~ 105 (414)
T PRK00549 58 ERSDLIITTGGLGPTKDDLTKETVAKFLGRELVLDEEALAKIEDYFAK 105 (414)
T ss_pred cCCCEEEECCCCCCCCCccHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 57899999999764 11 33678889999988865
No 236
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=23.02 E-value=1.7e+02 Score=24.35 Aligned_cols=35 Identities=17% Similarity=0.386 Sum_probs=24.6
Q ss_pred CcCEEEEcC-CCChhhhccChHHHHHHHHHHhCCCeEEEe
Q 029299 61 KYDGLVIPG-GRAPEYLAMNDSVIDLVRKFSNSGKTIASI 99 (195)
Q Consensus 61 ~~D~livpG-G~~~~~l~~~~~l~~~l~~~~~~~k~i~ai 99 (195)
.++.||+-| |.|. .++.+.+.|+++.++|.+|...
T Consensus 224 ~~~GlVl~~~G~Gn----~~~~~~~~l~~a~~~gipVV~~ 259 (313)
T PF00710_consen 224 GAKGLVLEGYGAGN----VPPALLEALARAVERGIPVVVT 259 (313)
T ss_dssp T-SEEEEEEBTTTB----SSHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCEEEEeccCCCC----CCHHHHHHHHHHHhcCceEEEe
Confidence 467777755 2332 5788999999999999887654
No 237
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=22.63 E-value=52 Score=23.21 Aligned_cols=16 Identities=25% Similarity=0.059 Sum_probs=11.8
Q ss_pred HHHHhCCCeEEEeCCC
Q 029299 5 QALLAFGVSVDAACPG 20 (195)
Q Consensus 5 ~~l~~~G~~v~~~s~~ 20 (195)
..|+..||+|....+.
T Consensus 21 ~~l~~~G~~vi~lG~~ 36 (122)
T cd02071 21 RALRDAGFEVIYTGLR 36 (122)
T ss_pred HHHHHCCCEEEECCCC
Confidence 3577788888887775
No 238
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=22.13 E-value=69 Score=22.19 Aligned_cols=16 Identities=25% Similarity=0.094 Sum_probs=10.5
Q ss_pred HHHHhCCCeEEEeCCC
Q 029299 5 QALLAFGVSVDAACPG 20 (195)
Q Consensus 5 ~~l~~~G~~v~~~s~~ 20 (195)
..|++.||+|..+.+.
T Consensus 21 ~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 21 RALRDAGFEVIDLGVD 36 (119)
T ss_pred HHHHHCCCEEEECCCC
Confidence 3567788888666543
No 239
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=22.08 E-value=1.8e+02 Score=22.29 Aligned_cols=38 Identities=11% Similarity=0.108 Sum_probs=30.7
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 102 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G 102 (195)
.+-|++|+....| +++.+.+.++.+.++|.++.+|+.-
T Consensus 110 ~~~Dv~I~iS~SG-----~t~~~i~~~~~ak~~g~~iI~iT~~ 147 (192)
T PRK00414 110 REGDVLLGISTSG-----NSGNIIKAIEAARAKGMKVITLTGK 147 (192)
T ss_pred CCCCEEEEEeCCC-----CCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4568888876544 5778999999999999999999874
No 240
>PRK13937 phosphoheptose isomerase; Provisional
Probab=21.32 E-value=2e+02 Score=21.89 Aligned_cols=37 Identities=14% Similarity=0.063 Sum_probs=30.0
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 101 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~ 101 (195)
.+-|++|+....| +++++.+.++...++|.++.+++.
T Consensus 105 ~~~Dl~i~iS~sG-----~t~~~~~~~~~ak~~g~~~I~iT~ 141 (188)
T PRK13937 105 RPGDVLIGISTSG-----NSPNVLAALEKARELGMKTIGLTG 141 (188)
T ss_pred CCCCEEEEEeCCC-----CcHHHHHHHHHHHHCCCeEEEEeC
Confidence 4458888877554 567899999999999999999877
No 241
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.05 E-value=1.3e+02 Score=25.08 Aligned_cols=37 Identities=19% Similarity=0.408 Sum_probs=26.6
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHHH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 104 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~~ 104 (195)
..+|++|+.||.|. +++.++.+...+.||.+|-.|..
T Consensus 61 ~~~d~vi~~GGDGt--------~l~~~~~~~~~~~Pvlgin~G~l 97 (295)
T PRK01231 61 EVCDLVIVVGGDGS--------LLGAARALARHNVPVLGINRGRL 97 (295)
T ss_pred cCCCEEEEEeCcHH--------HHHHHHHhcCCCCCEEEEeCCcc
Confidence 35899999998764 33445555567888888888754
No 242
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=20.79 E-value=2.1e+02 Score=21.30 Aligned_cols=38 Identities=11% Similarity=0.055 Sum_probs=30.1
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 102 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G 102 (195)
.+-|++|+....| +++++.+.++.+.++|.++.+|+..
T Consensus 100 ~~~Dv~I~iS~SG-----~t~~~i~~~~~ak~~Ga~vI~IT~~ 137 (177)
T cd05006 100 QPGDVLIGISTSG-----NSPNVLKALEAAKERGMKTIALTGR 137 (177)
T ss_pred CCCCEEEEEeCCC-----CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4558888766443 5778999999999999999999864
No 243
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=20.74 E-value=1.4e+02 Score=23.93 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=24.9
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecHHH
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 103 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~G~ 103 (195)
.++|.|||.=-. . ..+.+.+.|+.....+.+|..+.+|.
T Consensus 58 ~~~D~iiv~vKs----~-~~~~~l~~l~~~l~~~~~iv~~qNG~ 96 (293)
T TIGR00745 58 PPADLVIITVKA----Y-QTEEAAALLLPLIGKNTKVLFLQNGL 96 (293)
T ss_pred CCCCEEEEeccc----h-hHHHHHHHhHhhcCCCCEEEEccCCC
Confidence 579988885311 1 23445666666666677777777774
No 244
>PRK06703 flavodoxin; Provisional
Probab=20.65 E-value=1.3e+02 Score=21.77 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=22.1
Q ss_pred CCCcCEEEEcCC-CChhhhc-cChHHHHHHHHHHhCCCeEEEecHH
Q 029299 59 PTKYDGLVIPGG-RAPEYLA-MNDSVIDLVRKFSNSGKTIASICHG 102 (195)
Q Consensus 59 ~~~~D~livpGG-~~~~~l~-~~~~l~~~l~~~~~~~k~i~aic~G 102 (195)
..+||.|++... ++...+. .-..+.++|++..-+++.++.+++|
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g 91 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSG 91 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccC
Confidence 357898888542 1111111 1122334444333457777777665
No 245
>PLN02204 diacylglycerol kinase
Probab=20.57 E-value=62 Score=29.81 Aligned_cols=15 Identities=33% Similarity=0.643 Sum_probs=12.9
Q ss_pred CCCcCEEEEcCCCCh
Q 029299 59 PTKYDGLVIPGGRAP 73 (195)
Q Consensus 59 ~~~~D~livpGG~~~ 73 (195)
...||.||+.||-|.
T Consensus 216 l~~~D~VVaVGGDGt 230 (601)
T PLN02204 216 LKSYDGVIAVGGDGF 230 (601)
T ss_pred ccCCCEEEEEcCccH
Confidence 467999999999885
No 246
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=20.56 E-value=30 Score=23.92 Aligned_cols=16 Identities=25% Similarity=0.108 Sum_probs=12.2
Q ss_pred HHHHhCCCeEEEeCCC
Q 029299 5 QALLAFGVSVDAACPG 20 (195)
Q Consensus 5 ~~l~~~G~~v~~~s~~ 20 (195)
..|+++|++|+++...
T Consensus 22 ~~l~~~G~~v~~~d~~ 37 (121)
T PF02310_consen 22 AYLRKAGHEVDILDAN 37 (121)
T ss_dssp HHHHHTTBEEEEEESS
T ss_pred HHHHHCCCeEEEECCC
Confidence 4678889999888654
No 247
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=20.56 E-value=2e+02 Score=23.03 Aligned_cols=40 Identities=10% Similarity=0.067 Sum_probs=27.1
Q ss_pred CCCCcCEEEEcCCCChhhhccChHHHHHHHHHHhCCCeEEEecH
Q 029299 58 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 101 (195)
Q Consensus 58 ~~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~~k~i~aic~ 101 (195)
++...|++||-|-.. ....+.+..+.++..+-|+|.++++
T Consensus 68 SPRhADvliVtG~VT----~km~~~L~rlyeqmPePK~VIA~Ga 107 (225)
T CHL00023 68 SPRQADLILTAGTVT----MKMAPSLVRLYEQMPEPKYVIAMGA 107 (225)
T ss_pred CcccceEEEEecCCc----cccHHHHHHHHHhcCCCCeEEEEcc
Confidence 356789999987432 1234566666677788888887754
No 248
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=20.35 E-value=4.2e+02 Score=21.01 Aligned_cols=46 Identities=9% Similarity=0.195 Sum_probs=27.3
Q ss_pred CCcCEEEEcCCCChhhhccChHHHHHHHHHH--hCCCeEEEecHHHHHH-HhCCC
Q 029299 60 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFS--NSGKTIASICHGQLIL-AAADV 111 (195)
Q Consensus 60 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~--~~~k~i~aic~G~~lL-a~aGl 111 (195)
.+||+||+-.-.+.+. +.+.+++.. .++..+++|..++.-. .+.|+
T Consensus 54 ~~~d~iifTS~naV~~------~~~~l~~~~~~~~~~~~~aVG~~Ta~al~~~G~ 102 (255)
T PRK05752 54 DRYCAVIVVSKPAARL------GLELLDRYWPQPPQQPWFSVGAATAAILQDYGL 102 (255)
T ss_pred CCCCEEEEECHHHHHH------HHHHHHhhCCCCcCCEEEEECHHHHHHHHHcCC
Confidence 5899999987655443 223333222 1246788888887753 44554
Done!