Query 029300
Match_columns 195
No_of_seqs 395 out of 2714
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 10:41:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029300.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029300hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4207 Predicted splicing fac 99.9 3.5E-26 7.7E-31 166.5 14.8 100 1-102 1-100 (256)
2 KOG0107 Alternative splicing f 99.9 7.3E-23 1.6E-27 145.6 14.9 79 14-97 9-87 (195)
3 PLN03134 glycine-rich RNA-bind 99.9 1.3E-21 2.8E-26 140.0 13.6 86 12-97 31-116 (144)
4 KOG0113 U1 small nuclear ribon 99.9 1.2E-20 2.6E-25 144.5 14.8 82 13-94 99-180 (335)
5 KOG0130 RNA-binding protein RB 99.8 3.3E-20 7.1E-25 126.9 8.4 93 5-97 62-154 (170)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.8E-19 4E-24 147.0 12.7 84 13-96 267-350 (352)
7 TIGR01659 sex-lethal sex-letha 99.8 1.8E-19 3.9E-24 145.9 11.6 86 9-94 101-186 (346)
8 KOG0121 Nuclear cap-binding pr 99.8 2.2E-19 4.7E-24 121.8 7.7 84 12-95 33-116 (153)
9 PF00076 RRM_1: RNA recognitio 99.8 1.5E-18 3.2E-23 109.0 9.0 70 18-88 1-70 (70)
10 KOG0122 Translation initiation 99.8 9.9E-19 2.1E-23 130.7 9.2 83 13-95 187-269 (270)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.8E-18 3.9E-23 141.2 11.1 82 15-96 3-84 (352)
12 TIGR01659 sex-lethal sex-letha 99.7 1.5E-17 3.2E-22 134.8 10.8 84 14-97 192-277 (346)
13 PF14259 RRM_6: RNA recognitio 99.7 4E-17 8.7E-22 102.8 9.3 70 18-88 1-70 (70)
14 KOG0149 Predicted RNA-binding 99.7 2.8E-17 6.2E-22 122.4 7.1 79 15-94 12-90 (247)
15 KOG0126 Predicted RNA-binding 99.7 1.8E-18 4E-23 124.0 0.8 87 8-94 28-114 (219)
16 TIGR01645 half-pint poly-U bin 99.7 9.5E-17 2.1E-21 137.1 11.2 85 14-98 203-287 (612)
17 TIGR01642 U2AF_lg U2 snRNP aux 99.7 1.5E-16 3.3E-21 135.8 12.3 83 14-96 294-376 (509)
18 PLN03120 nucleic acid binding 99.7 2E-16 4.3E-21 121.3 10.9 76 15-94 4-79 (260)
19 TIGR01622 SF-CC1 splicing fact 99.7 2E-16 4.4E-21 133.4 11.7 80 15-94 186-265 (457)
20 KOG0105 Alternative splicing f 99.7 2E-16 4.3E-21 114.0 9.6 81 13-96 4-84 (241)
21 TIGR01645 half-pint poly-U bin 99.7 1.5E-16 3.3E-21 135.8 10.3 81 13-93 105-185 (612)
22 KOG0114 Predicted RNA-binding 99.7 3.2E-16 7E-21 102.6 9.1 80 12-94 15-94 (124)
23 TIGR01622 SF-CC1 splicing fact 99.7 3.9E-16 8.6E-21 131.6 11.3 82 12-94 86-167 (457)
24 smart00362 RRM_2 RNA recogniti 99.7 7.1E-16 1.5E-20 96.4 9.2 72 17-90 1-72 (72)
25 KOG0131 Splicing factor 3b, su 99.7 1.8E-16 3.9E-21 113.9 6.8 83 11-93 5-87 (203)
26 KOG0148 Apoptosis-promoting RN 99.7 5.6E-16 1.2E-20 117.6 9.5 80 12-97 161-240 (321)
27 PLN03121 nucleic acid binding 99.7 8.8E-16 1.9E-20 116.1 10.6 77 13-93 3-79 (243)
28 TIGR01628 PABP-1234 polyadenyl 99.7 5.9E-16 1.3E-20 133.7 11.1 80 17-96 2-81 (562)
29 KOG0148 Apoptosis-promoting RN 99.7 3E-16 6.4E-21 119.1 8.0 86 11-96 58-143 (321)
30 PLN03213 repressor of silencin 99.7 5E-16 1.1E-20 126.6 9.7 78 13-94 8-87 (759)
31 KOG0125 Ataxin 2-binding prote 99.7 3.5E-16 7.7E-21 121.5 8.4 79 15-95 96-174 (376)
32 KOG0117 Heterogeneous nuclear 99.7 7.2E-16 1.6E-20 124.1 10.0 81 13-93 81-162 (506)
33 TIGR01648 hnRNP-R-Q heterogene 99.6 6.9E-16 1.5E-20 131.5 9.5 79 13-92 56-135 (578)
34 KOG0111 Cyclophilin-type pepti 99.6 1.9E-16 4.1E-21 116.9 4.8 85 13-97 8-92 (298)
35 smart00360 RRM RNA recognition 99.6 1.8E-15 3.9E-20 94.2 8.2 71 20-90 1-71 (71)
36 TIGR01628 PABP-1234 polyadenyl 99.6 2.1E-15 4.6E-20 130.3 10.9 83 13-96 283-365 (562)
37 TIGR01648 hnRNP-R-Q heterogene 99.6 5.1E-15 1.1E-19 126.3 11.7 77 14-98 232-310 (578)
38 KOG0145 RNA-binding protein EL 99.6 4.9E-15 1.1E-19 112.1 10.2 87 9-95 272-358 (360)
39 cd00590 RRM RRM (RNA recogniti 99.6 9.3E-15 2E-19 91.7 9.7 74 17-91 1-74 (74)
40 COG0724 RNA-binding proteins ( 99.6 5E-15 1.1E-19 115.6 10.1 80 15-94 115-194 (306)
41 KOG0145 RNA-binding protein EL 99.6 4.7E-15 1E-19 112.2 9.2 81 15-95 41-121 (360)
42 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 8.8E-15 1.9E-19 124.1 11.5 78 13-95 273-351 (481)
43 KOG0108 mRNA cleavage and poly 99.6 3.3E-15 7.2E-20 123.1 8.2 85 16-100 19-103 (435)
44 KOG0415 Predicted peptidyl pro 99.6 1.2E-14 2.5E-19 114.3 9.5 84 12-95 236-319 (479)
45 KOG0127 Nucleolar protein fibr 99.6 1.3E-14 2.7E-19 119.6 9.2 81 15-96 117-197 (678)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 1.9E-14 4.2E-19 122.1 10.5 74 15-94 2-77 (481)
47 KOG0144 RNA-binding protein CU 99.6 4E-15 8.7E-20 119.4 5.9 85 13-98 122-209 (510)
48 KOG0127 Nucleolar protein fibr 99.6 2.3E-14 5.1E-19 118.0 9.6 86 11-96 288-379 (678)
49 PF13893 RRM_5: RNA recognitio 99.5 4.1E-14 8.9E-19 85.1 8.2 56 32-92 1-56 (56)
50 KOG0146 RNA-binding protein ET 99.5 7.5E-15 1.6E-19 111.5 5.4 85 12-96 282-366 (371)
51 KOG0117 Heterogeneous nuclear 99.5 1.9E-14 4.1E-19 116.0 7.8 76 15-98 259-334 (506)
52 KOG0144 RNA-binding protein CU 99.5 2.5E-14 5.4E-19 114.9 8.2 83 13-95 32-117 (510)
53 KOG0109 RNA-binding protein LA 99.5 1.6E-14 3.5E-19 110.7 6.0 72 16-95 3-74 (346)
54 smart00361 RRM_1 RNA recogniti 99.5 7.9E-14 1.7E-18 87.7 7.8 61 29-89 2-69 (70)
55 KOG0124 Polypyrimidine tract-b 99.5 1.9E-14 4.2E-19 113.6 4.8 79 15-93 113-191 (544)
56 KOG0147 Transcriptional coacti 99.5 4.4E-14 9.5E-19 116.5 6.4 77 18-94 281-357 (549)
57 KOG4212 RNA-binding protein hn 99.5 2.4E-13 5.2E-18 109.5 9.7 82 13-95 42-124 (608)
58 KOG4206 Spliceosomal protein s 99.5 3.1E-13 6.7E-18 100.6 9.2 90 11-103 5-98 (221)
59 KOG4208 Nucleolar RNA-binding 99.4 4.1E-13 9E-18 98.5 8.3 87 9-95 43-130 (214)
60 TIGR01642 U2AF_lg U2 snRNP aux 99.4 6.1E-13 1.3E-17 113.7 9.6 75 12-93 172-258 (509)
61 KOG0131 Splicing factor 3b, su 99.4 6.7E-13 1.4E-17 95.6 6.6 85 12-96 93-178 (203)
62 KOG0109 RNA-binding protein LA 99.4 3.3E-13 7.1E-18 103.7 5.2 75 12-94 75-149 (346)
63 KOG0153 Predicted RNA-binding 99.4 2.9E-12 6.4E-17 100.6 9.1 86 3-94 216-302 (377)
64 KOG0132 RNA polymerase II C-te 99.4 2.3E-12 5.1E-17 110.1 8.0 79 15-99 421-499 (894)
65 KOG0123 Polyadenylate-binding 99.3 9.2E-12 2E-16 101.8 8.0 78 16-96 77-154 (369)
66 KOG4661 Hsp27-ERE-TATA-binding 99.3 7.8E-12 1.7E-16 103.9 7.5 84 15-98 405-488 (940)
67 KOG0110 RNA-binding protein (R 99.3 3.9E-12 8.5E-17 107.8 5.5 85 13-97 611-695 (725)
68 KOG4212 RNA-binding protein hn 99.3 1.3E-11 2.9E-16 99.6 7.6 77 11-92 532-608 (608)
69 KOG0124 Polypyrimidine tract-b 99.3 1.3E-11 2.7E-16 97.8 7.3 83 15-97 210-292 (544)
70 KOG0533 RRM motif-containing p 99.2 3.2E-11 6.9E-16 92.4 8.3 80 15-95 83-162 (243)
71 KOG0110 RNA-binding protein (R 99.2 2.7E-11 5.8E-16 102.9 8.4 78 16-93 516-596 (725)
72 KOG0146 RNA-binding protein ET 99.2 1.1E-11 2.5E-16 94.4 5.2 83 14-97 18-103 (371)
73 KOG0106 Alternative splicing f 99.2 8.6E-12 1.9E-16 93.6 4.1 72 16-95 2-73 (216)
74 KOG1457 RNA binding protein (c 99.2 1.5E-10 3.2E-15 86.2 9.5 88 15-102 34-125 (284)
75 KOG4454 RNA binding protein (R 99.2 8.5E-12 1.8E-16 92.4 2.3 81 11-93 5-85 (267)
76 KOG0123 Polyadenylate-binding 99.2 1.2E-10 2.6E-15 95.3 7.9 76 16-97 2-77 (369)
77 KOG0116 RasGAP SH3 binding pro 99.1 2.4E-10 5.3E-15 94.1 9.2 84 13-97 286-369 (419)
78 PF04059 RRM_2: RNA recognitio 99.1 5.7E-10 1.2E-14 73.9 8.9 79 16-94 2-86 (97)
79 KOG1548 Transcription elongati 99.1 2.4E-10 5.2E-15 89.9 8.1 87 12-99 131-225 (382)
80 KOG4205 RNA-binding protein mu 99.1 6E-11 1.3E-15 94.2 4.3 80 14-94 5-84 (311)
81 KOG4209 Splicing factor RNPS1, 99.1 1.4E-10 3.1E-15 88.9 5.9 82 13-95 99-180 (231)
82 KOG4205 RNA-binding protein mu 99.1 2.7E-10 5.8E-15 90.6 5.6 82 15-97 97-178 (311)
83 KOG0151 Predicted splicing reg 99.0 1.5E-09 3.3E-14 92.4 8.4 84 13-96 172-258 (877)
84 KOG4676 Splicing factor, argin 99.0 1.4E-09 3E-14 86.9 7.3 72 17-89 9-83 (479)
85 KOG1995 Conserved Zn-finger pr 99.0 7.1E-10 1.5E-14 87.8 5.5 88 10-97 61-156 (351)
86 KOG4660 Protein Mei2, essentia 99.0 4.8E-10 1E-14 93.1 4.6 71 13-88 73-143 (549)
87 KOG0106 Alternative splicing f 98.9 6.2E-09 1.3E-13 78.3 6.2 71 11-89 95-165 (216)
88 KOG0120 Splicing factor U2AF, 98.9 3E-09 6.5E-14 88.9 4.9 85 12-96 286-370 (500)
89 KOG1190 Polypyrimidine tract-b 98.8 1.5E-08 3.2E-13 81.6 8.4 75 15-94 297-372 (492)
90 KOG0226 RNA-binding proteins [ 98.8 4.1E-09 8.9E-14 79.9 4.6 82 13-94 188-269 (290)
91 KOG4211 Splicing factor hnRNP- 98.8 2.4E-08 5.3E-13 82.1 8.9 80 12-95 7-86 (510)
92 PF11608 Limkain-b1: Limkain b 98.8 5.1E-08 1.1E-12 61.9 7.4 69 16-94 3-76 (90)
93 KOG0105 Alternative splicing f 98.8 1.5E-07 3.2E-12 68.5 10.6 73 4-83 104-176 (241)
94 PF08777 RRM_3: RNA binding mo 98.7 3.6E-08 7.9E-13 66.6 6.1 73 15-93 1-78 (105)
95 KOG2202 U2 snRNP splicing fact 98.7 6.7E-08 1.5E-12 73.6 6.5 73 30-103 83-156 (260)
96 KOG1457 RNA binding protein (c 98.7 3.3E-08 7.2E-13 73.8 4.7 68 11-82 206-273 (284)
97 KOG4206 Spliceosomal protein s 98.6 1.7E-07 3.7E-12 70.2 8.2 77 12-93 143-220 (221)
98 KOG1456 Heterogeneous nuclear 98.6 4.5E-07 9.7E-12 72.5 9.4 82 9-95 281-363 (494)
99 KOG0147 Transcriptional coacti 98.6 1.9E-08 4.2E-13 83.6 1.2 84 12-96 176-259 (549)
100 KOG4211 Splicing factor hnRNP- 98.5 3.1E-07 6.8E-12 75.7 7.8 79 13-93 101-180 (510)
101 KOG4849 mRNA cleavage factor I 98.5 8.8E-08 1.9E-12 75.9 3.8 75 16-90 81-157 (498)
102 KOG1456 Heterogeneous nuclear 98.5 9.5E-07 2.1E-11 70.7 8.9 85 7-96 112-200 (494)
103 COG5175 MOT2 Transcriptional r 98.5 4.3E-07 9.4E-12 71.8 6.8 80 14-93 113-201 (480)
104 KOG4210 Nuclear localization s 98.4 3.3E-07 7.2E-12 72.6 4.4 83 15-98 184-267 (285)
105 KOG1548 Transcription elongati 98.4 2.4E-06 5.2E-11 67.8 8.9 81 9-93 259-350 (382)
106 KOG3152 TBP-binding protein, a 98.4 2.4E-07 5.1E-12 70.6 3.1 73 14-86 73-157 (278)
107 KOG2416 Acinus (induces apopto 98.4 4.3E-07 9.3E-12 76.4 4.4 81 7-93 436-520 (718)
108 KOG4307 RNA binding protein RB 98.4 1.2E-06 2.5E-11 75.2 7.0 75 16-91 868-943 (944)
109 PF05172 Nup35_RRM: Nup53/35/4 98.3 4.5E-06 9.8E-11 55.7 8.1 78 14-93 5-90 (100)
110 KOG2314 Translation initiation 98.3 2.2E-06 4.8E-11 71.9 7.9 80 13-93 56-142 (698)
111 PF14605 Nup35_RRM_2: Nup53/35 98.3 3E-06 6.6E-11 49.9 5.4 52 16-74 2-53 (53)
112 KOG0120 Splicing factor U2AF, 98.2 4.9E-06 1.1E-10 70.0 7.7 63 31-93 425-490 (500)
113 KOG0129 Predicted RNA-binding 98.2 5.6E-06 1.2E-10 68.9 7.4 68 9-76 364-432 (520)
114 KOG1190 Polypyrimidine tract-b 98.1 7E-06 1.5E-10 66.5 6.5 78 13-94 412-490 (492)
115 KOG1855 Predicted RNA-binding 98.1 3.4E-06 7.4E-11 68.6 4.3 68 13-80 229-309 (484)
116 KOG1365 RNA-binding protein Fu 98.1 5.7E-06 1.2E-10 66.6 4.9 78 15-93 280-360 (508)
117 PF08952 DUF1866: Domain of un 98.1 4E-05 8.6E-10 54.2 8.3 57 31-96 52-108 (146)
118 KOG4676 Splicing factor, argin 98.0 1.3E-06 2.9E-11 70.2 -0.2 76 16-96 152-227 (479)
119 KOG1996 mRNA splicing factor [ 98.0 2.5E-05 5.5E-10 60.8 6.4 66 29-94 300-366 (378)
120 KOG0112 Large RNA-binding prot 97.9 1.7E-05 3.7E-10 69.9 4.8 78 11-94 451-530 (975)
121 PF08675 RNA_bind: RNA binding 97.8 0.00011 2.3E-09 46.9 6.2 58 13-79 7-64 (87)
122 KOG0129 Predicted RNA-binding 97.8 0.00012 2.5E-09 61.2 7.6 63 14-77 258-326 (520)
123 KOG4307 RNA binding protein RB 97.7 4.2E-05 9.1E-10 65.9 4.0 81 11-92 430-511 (944)
124 KOG1365 RNA-binding protein Fu 97.6 0.00031 6.8E-09 56.8 7.5 71 16-88 162-236 (508)
125 PF10309 DUF2414: Protein of u 97.6 0.00047 1E-08 41.7 6.5 54 16-77 6-62 (62)
126 KOG0128 RNA-binding protein SA 97.6 4E-05 8.7E-10 67.3 2.2 79 15-94 736-814 (881)
127 PF03467 Smg4_UPF3: Smg-4/UPF3 97.5 0.00034 7.4E-09 51.7 5.8 83 13-95 5-98 (176)
128 KOG0128 RNA-binding protein SA 97.4 3.9E-06 8.4E-11 73.4 -5.3 71 13-83 665-735 (881)
129 KOG2068 MOT2 transcription fac 97.4 5.4E-05 1.2E-09 60.2 1.3 80 15-94 77-162 (327)
130 KOG0112 Large RNA-binding prot 97.4 4.1E-05 9E-10 67.6 0.5 81 11-92 368-448 (975)
131 KOG2193 IGF-II mRNA-binding pr 97.3 0.00021 4.4E-09 58.5 3.5 70 16-93 2-74 (584)
132 KOG4285 Mitotic phosphoprotein 97.3 0.0013 2.7E-08 51.8 7.6 71 15-93 197-268 (350)
133 KOG4660 Protein Mei2, essentia 97.3 0.00036 7.7E-09 58.9 4.8 81 16-96 389-474 (549)
134 PF07576 BRAP2: BRCA1-associat 97.3 0.0036 7.9E-08 42.5 8.7 68 15-84 13-81 (110)
135 PF15023 DUF4523: Protein of u 97.1 0.0034 7.4E-08 44.2 7.4 72 14-93 85-160 (166)
136 KOG2135 Proteins containing th 97.0 0.00041 8.9E-09 57.5 2.3 76 14-96 371-447 (526)
137 KOG2591 c-Mpl binding protein, 97.0 0.0011 2.4E-08 56.0 4.5 69 13-88 173-245 (684)
138 KOG0115 RNA-binding protein p5 96.9 0.0012 2.5E-08 50.8 3.8 75 16-91 32-110 (275)
139 PF04847 Calcipressin: Calcipr 96.9 0.0038 8.3E-08 46.4 6.2 63 28-96 8-72 (184)
140 KOG4207 Predicted splicing fac 96.8 0.026 5.6E-07 42.3 10.1 63 20-82 21-85 (256)
141 KOG2253 U1 snRNP complex, subu 96.6 0.0016 3.4E-08 56.2 2.8 71 12-91 37-107 (668)
142 PF03880 DbpA: DbpA RNA bindin 96.6 0.018 3.8E-07 36.2 6.9 59 25-92 11-74 (74)
143 KOG0804 Cytoplasmic Zn-finger 96.5 0.0092 2E-07 49.5 6.7 68 15-84 74-142 (493)
144 KOG4574 RNA-binding protein (c 96.4 0.0027 5.8E-08 56.3 3.0 75 18-98 301-377 (1007)
145 KOG4210 Nuclear localization s 95.8 0.0063 1.4E-07 48.5 2.5 80 14-93 87-166 (285)
146 KOG2193 IGF-II mRNA-binding pr 95.7 0.00069 1.5E-08 55.5 -3.4 78 15-95 80-157 (584)
147 PF11767 SET_assoc: Histone ly 95.5 0.11 2.3E-06 31.9 6.5 55 26-89 11-65 (66)
148 KOG4483 Uncharacterized conser 95.2 0.074 1.6E-06 43.7 6.5 57 13-76 389-446 (528)
149 KOG2318 Uncharacterized conser 95.2 0.15 3.2E-06 43.9 8.4 82 12-93 171-306 (650)
150 KOG4410 5-formyltetrahydrofola 93.6 0.29 6.3E-06 38.6 6.3 47 15-67 330-377 (396)
151 KOG4019 Calcineurin-mediated s 92.6 0.097 2.1E-06 38.5 2.3 74 16-95 11-90 (193)
152 smart00596 PRE_C2HC PRE_C2HC d 90.5 0.45 9.8E-06 29.3 3.3 60 30-92 2-62 (69)
153 KOG2295 C2H2 Zn-finger protein 90.3 0.038 8.3E-07 47.1 -1.9 75 13-87 229-303 (648)
154 PF07530 PRE_C2HC: Associated 89.4 1 2.2E-05 27.8 4.3 61 30-93 2-63 (68)
155 KOG1295 Nonsense-mediated deca 88.0 0.7 1.5E-05 37.9 3.7 68 15-82 7-77 (376)
156 PF10567 Nab6_mRNP_bdg: RNA-re 87.9 1.7 3.6E-05 34.6 5.6 83 11-93 11-106 (309)
157 PF03468 XS: XS domain; Inter 87.9 1.4 3.1E-05 30.2 4.7 56 17-75 10-75 (116)
158 PRK10629 EnvZ/OmpR regulon mod 86.6 7.2 0.00016 27.2 7.7 73 13-93 33-109 (127)
159 COG0724 RNA-binding proteins ( 85.6 1.3 2.8E-05 33.8 4.1 65 12-76 222-286 (306)
160 PRK11901 hypothetical protein; 83.2 3.7 7.9E-05 33.3 5.6 63 13-80 243-307 (327)
161 COG5638 Uncharacterized conser 83.2 4.9 0.00011 33.6 6.4 85 9-93 140-296 (622)
162 TIGR03636 L23_arch archaeal ri 80.2 6.7 0.00015 24.8 5.0 56 18-76 16-73 (77)
163 PRK11634 ATP-dependent RNA hel 79.6 34 0.00073 30.7 10.9 62 25-95 497-563 (629)
164 KOG4008 rRNA processing protei 79.3 3.2 6.8E-05 32.0 3.8 35 12-46 37-71 (261)
165 PRK14548 50S ribosomal protein 79.2 6.9 0.00015 25.2 4.9 56 18-76 23-80 (84)
166 KOG4365 Uncharacterized conser 78.9 0.33 7.2E-06 40.5 -1.6 78 16-94 4-81 (572)
167 KOG0151 Predicted splicing reg 77.0 3.5 7.6E-05 36.8 3.9 11 60-70 695-705 (877)
168 COG5193 LHP1 La protein, small 76.5 1.4 3.1E-05 36.5 1.3 59 17-75 176-244 (438)
169 PF00403 HMA: Heavy-metal-asso 75.7 14 0.00029 21.7 6.0 54 17-76 1-58 (62)
170 KOG2891 Surface glycoprotein [ 73.3 1.5 3.3E-05 34.6 0.7 67 16-82 150-247 (445)
171 PF15513 DUF4651: Domain of un 72.1 11 0.00024 22.7 4.1 19 30-48 9-27 (62)
172 KOG4454 RNA binding protein (R 69.7 1 2.2E-05 34.4 -0.9 66 16-82 81-150 (267)
173 KOG2888 Putative RNA binding p 69.3 2.4 5.3E-05 34.3 1.1 6 59-64 162-167 (453)
174 PF08734 GYD: GYD domain; Int 66.4 33 0.00071 22.3 5.9 45 30-78 23-68 (91)
175 KOG0156 Cytochrome P450 CYP2 s 65.7 12 0.00025 32.4 4.6 60 18-87 35-97 (489)
176 PF02714 DUF221: Domain of unk 63.8 8.2 0.00018 31.1 3.2 33 60-94 1-33 (325)
177 KOG3702 Nuclear polyadenylated 62.2 4.1 8.9E-05 36.0 1.2 70 17-87 513-582 (681)
178 COG5507 Uncharacterized conser 61.9 10 0.00022 25.1 2.7 21 57-77 66-86 (117)
179 cd06410 PB1_UP2 Uncharacterize 61.3 45 0.00097 22.0 7.2 78 1-80 1-85 (97)
180 COG0225 MsrA Peptide methionin 60.9 30 0.00064 25.5 5.3 76 17-96 59-139 (174)
181 COG2608 CopZ Copper chaperone 59.9 35 0.00077 20.9 4.9 45 16-66 4-48 (71)
182 PTZ00191 60S ribosomal protein 59.9 28 0.0006 24.9 4.9 55 18-75 84-140 (145)
183 cd06405 PB1_Mekk2_3 The PB1 do 59.6 42 0.0009 21.1 7.4 63 20-91 13-76 (79)
184 PF03439 Spt5-NGN: Early trans 59.0 26 0.00056 22.3 4.3 38 41-83 33-70 (84)
185 PRK08559 nusG transcription an 58.2 48 0.001 23.8 6.1 34 42-80 36-69 (153)
186 KOG4213 RNA-binding protein La 57.2 23 0.00051 26.3 4.2 49 27-76 118-169 (205)
187 PRK02886 hypothetical protein; 57.2 47 0.001 21.5 5.1 54 13-82 5-58 (87)
188 PRK11230 glycolate oxidase sub 56.5 45 0.00097 29.0 6.6 49 29-78 203-255 (499)
189 PF09707 Cas_Cas2CT1978: CRISP 56.3 27 0.00058 22.6 4.0 45 17-64 27-71 (86)
190 COG0030 KsgA Dimethyladenosine 55.7 14 0.0003 29.2 3.1 27 16-42 96-122 (259)
191 PF11823 DUF3343: Protein of u 53.4 17 0.00037 22.4 2.7 25 58-82 2-26 (73)
192 PF08544 GHMP_kinases_C: GHMP 53.4 52 0.0011 20.3 5.7 44 30-78 37-80 (85)
193 KOG3424 40S ribosomal protein 53.2 50 0.0011 22.7 5.0 46 26-72 34-84 (132)
194 KOG2888 Putative RNA binding p 53.2 7.5 0.00016 31.6 1.3 12 28-39 170-181 (453)
195 PF05189 RTC_insert: RNA 3'-te 53.1 45 0.00097 22.0 4.9 49 17-65 12-65 (103)
196 smart00666 PB1 PB1 domain. Pho 52.8 53 0.0012 20.3 5.6 56 18-78 12-69 (81)
197 KOG4840 Predicted hydrolases o 51.9 28 0.0006 27.1 4.0 72 15-91 37-114 (299)
198 KOG2187 tRNA uracil-5-methyltr 51.4 15 0.00032 31.9 2.7 37 58-94 64-100 (534)
199 PHA03008 hypothetical protein; 51.3 44 0.00095 25.3 4.9 49 1-49 6-55 (234)
200 cd04878 ACT_AHAS N-terminal AC 49.8 51 0.0011 19.1 7.0 32 17-48 2-34 (72)
201 PF07292 NID: Nmi/IFP 35 domai 49.6 11 0.00023 24.6 1.3 22 15-36 52-73 (88)
202 smart00195 DSPc Dual specifici 49.1 75 0.0016 21.8 5.8 71 17-91 7-85 (138)
203 TIGR00387 glcD glycolate oxida 48.8 57 0.0012 27.5 6.0 51 26-77 143-197 (413)
204 COG0150 PurM Phosphoribosylami 48.0 8.4 0.00018 31.5 0.8 48 29-80 275-322 (345)
205 KOG2854 Possible pfkB family c 46.2 25 0.00054 28.7 3.2 65 15-80 160-234 (343)
206 PF09902 DUF2129: Uncharacteri 45.5 62 0.0013 20.1 4.2 39 35-82 16-54 (71)
207 KOG0113 U1 small nuclear ribon 45.1 31 0.00066 27.8 3.5 6 63-68 110-115 (335)
208 PF08156 NOP5NT: NOP5NT (NUC12 45.1 6.9 0.00015 24.0 -0.1 39 30-78 27-65 (67)
209 PF13291 ACT_4: ACT domain; PD 43.8 76 0.0016 19.5 5.7 64 17-80 8-72 (80)
210 PF00398 RrnaAD: Ribosomal RNA 43.8 24 0.00052 27.6 2.8 23 15-37 97-119 (262)
211 PF13046 DUF3906: Protein of u 43.3 24 0.00052 21.4 2.1 34 27-62 30-63 (64)
212 PF09383 NIL: NIL domain; Int 43.3 59 0.0013 19.9 4.1 54 25-78 12-67 (76)
213 cd00027 BRCT Breast Cancer Sup 42.5 43 0.00094 19.1 3.3 27 16-42 2-28 (72)
214 COG1207 GlmU N-acetylglucosami 42.4 1.1E+02 0.0023 26.3 6.3 69 12-80 94-174 (460)
215 PF05727 UPF0228: Uncharacteri 42.3 84 0.0018 21.8 4.8 58 19-91 55-122 (127)
216 cd06404 PB1_aPKC PB1 domain is 41.8 94 0.002 20.0 6.8 55 17-78 10-69 (83)
217 PF14111 DUF4283: Domain of un 41.8 8.7 0.00019 27.1 0.0 65 18-91 18-88 (153)
218 cd06408 PB1_NoxR The PB1 domai 41.5 72 0.0016 20.6 4.2 53 18-76 13-66 (86)
219 PF14111 DUF4283: Domain of un 41.2 30 0.00066 24.2 2.8 34 16-49 105-139 (153)
220 COG4010 Uncharacterized protei 41.1 1.3E+02 0.0029 21.5 6.3 47 22-78 118-164 (170)
221 PRK00274 ksgA 16S ribosomal RN 41.0 29 0.00062 27.4 2.9 22 17-38 107-128 (272)
222 PF11411 DNA_ligase_IV: DNA li 40.7 23 0.00049 18.9 1.5 17 25-41 19-35 (36)
223 KOG0829 60S ribosomal protein 40.5 31 0.00067 24.8 2.6 64 4-67 6-80 (169)
224 PTZ00338 dimethyladenosine tra 40.0 28 0.00061 27.9 2.7 22 17-38 103-124 (294)
225 TIGR00110 ilvD dihydroxy-acid 40.0 1.6E+02 0.0035 25.9 7.3 36 57-95 383-418 (535)
226 smart00738 NGN In Spt5p, this 39.9 59 0.0013 21.2 3.9 23 58-80 60-82 (106)
227 TIGR00279 L10e ribosomal prote 39.7 1.5E+02 0.0032 21.9 6.1 26 58-84 129-158 (172)
228 PRK02302 hypothetical protein; 39.6 80 0.0017 20.6 4.2 54 13-82 7-60 (89)
229 PRK04199 rpl10e 50S ribosomal 39.3 1.6E+02 0.0034 21.8 7.5 62 15-83 81-157 (172)
230 PF04127 DFP: DNA / pantothena 39.2 92 0.002 23.1 5.2 60 16-77 19-79 (185)
231 PRK01178 rps24e 30S ribosomal 39.0 1.1E+02 0.0024 20.3 4.9 46 26-72 30-80 (99)
232 KOG1999 RNA polymerase II tran 38.6 77 0.0017 29.8 5.3 34 55-89 208-241 (1024)
233 PF12829 Mhr1: Transcriptional 38.4 97 0.0021 20.3 4.5 52 23-78 20-72 (91)
234 CHL00123 rps6 ribosomal protei 38.3 1.1E+02 0.0025 20.0 5.4 57 17-75 10-80 (97)
235 PF12623 Hen1_L: RNA repair, l 37.8 1E+02 0.0022 24.0 5.1 62 15-77 118-183 (245)
236 PRK13014 methionine sulfoxide 37.5 1.6E+02 0.0035 22.0 6.1 74 17-93 61-138 (186)
237 PRK00911 dihydroxy-acid dehydr 37.3 1.9E+02 0.0042 25.6 7.4 36 57-95 398-433 (552)
238 TIGR00755 ksgA dimethyladenosi 37.2 44 0.00095 25.9 3.4 24 17-40 96-119 (253)
239 PF00564 PB1: PB1 domain; Int 37.2 47 0.001 20.6 3.0 63 21-90 16-80 (84)
240 PF14581 SseB_C: SseB protein 36.9 85 0.0018 20.8 4.3 79 15-93 5-89 (108)
241 TIGR01873 cas_CT1978 CRISPR-as 36.5 47 0.001 21.5 2.8 47 17-66 27-74 (87)
242 PRK10905 cell division protein 36.4 74 0.0016 25.9 4.4 61 14-79 246-308 (328)
243 PLN02805 D-lactate dehydrogena 36.4 1.2E+02 0.0026 26.8 6.2 50 27-77 278-331 (555)
244 PRK11558 putative ssRNA endonu 35.9 63 0.0014 21.4 3.4 47 17-66 29-75 (97)
245 COG0018 ArgS Arginyl-tRNA synt 35.8 1.4E+02 0.003 26.6 6.5 64 28-98 59-130 (577)
246 PF11491 DUF3213: Protein of u 34.4 1.2E+02 0.0025 19.5 4.2 66 18-90 3-72 (88)
247 COG1098 VacB Predicted RNA bin 34.3 89 0.0019 21.8 4.0 34 60-93 21-62 (129)
248 PRK14054 methionine sulfoxide 34.0 1.9E+02 0.0042 21.3 6.7 74 17-93 56-133 (172)
249 smart00650 rADc Ribosomal RNA 33.9 53 0.0011 23.6 3.1 23 16-38 78-100 (169)
250 PRK12280 rplW 50S ribosomal pr 33.8 1.4E+02 0.003 21.7 5.1 33 17-49 23-57 (158)
251 PTZ00071 40S ribosomal protein 33.3 1.2E+02 0.0026 21.4 4.5 46 26-72 35-86 (132)
252 CHL00030 rpl23 ribosomal prote 33.0 1.4E+02 0.0031 19.5 5.0 32 18-49 21-54 (93)
253 COG5584 Predicted small secret 33.0 85 0.0018 20.8 3.5 30 22-51 29-58 (103)
254 PHA01632 hypothetical protein 32.8 45 0.00097 19.6 2.0 21 18-38 19-39 (64)
255 KOG0635 Adenosine 5'-phosphosu 32.6 95 0.0021 22.7 4.1 34 13-46 29-65 (207)
256 PF00585 Thr_dehydrat_C: C-ter 32.5 1E+02 0.0022 19.9 4.0 62 17-80 11-74 (91)
257 PF06919 Phage_T4_Gp30_7: Phag 32.5 66 0.0014 21.6 3.0 41 38-92 28-68 (121)
258 KOG3580 Tight junction protein 32.3 3.8E+02 0.0083 24.2 9.8 7 16-22 40-46 (1027)
259 TIGR00405 L26e_arch ribosomal 32.0 1.8E+02 0.0039 20.4 6.0 25 56-80 37-61 (145)
260 PF04026 SpoVG: SpoVG; InterP 31.9 79 0.0017 20.3 3.3 45 41-92 2-48 (84)
261 PF07237 DUF1428: Protein of u 31.8 1.5E+02 0.0033 19.9 4.7 47 31-77 24-85 (103)
262 PF05036 SPOR: Sporulation rel 31.8 5.9 0.00013 24.1 -2.0 61 15-78 4-65 (76)
263 KOG2836 Protein tyrosine phosp 30.6 1.1E+02 0.0024 21.8 4.0 47 2-48 2-49 (173)
264 KOG3671 Actin regulatory prote 30.3 1.4E+02 0.003 26.0 5.2 49 27-80 90-138 (569)
265 KOG2855 Ribokinase [Carbohydra 30.2 87 0.0019 25.7 4.0 46 15-64 61-107 (330)
266 COG3254 Uncharacterized conser 30.2 1.7E+02 0.0038 19.6 5.2 43 30-75 27-69 (105)
267 PF15063 TC1: Thyroid cancer p 29.7 32 0.0007 21.6 1.2 26 17-42 27-52 (79)
268 cd01611 GABARAP Ubiquitin doma 29.6 1.2E+02 0.0025 20.7 4.0 15 23-37 47-61 (112)
269 PF07521 RMMBL: RNA-metabolisi 29.5 95 0.0021 16.8 3.0 31 16-47 7-37 (43)
270 PF15440 THRAP3_BCLAF1: THRAP3 29.2 73 0.0016 28.8 3.7 7 116-122 2-8 (646)
271 cd04879 ACT_3PGDH-like ACT_3PG 29.1 1.2E+02 0.0026 17.3 5.5 24 26-49 10-34 (71)
272 PF07876 Dabb: Stress responsi 28.6 1.6E+02 0.0034 18.6 6.5 56 18-73 4-70 (97)
273 smart00457 MACPF membrane-atta 28.5 74 0.0016 23.6 3.2 28 20-47 30-59 (194)
274 PF14268 YoaP: YoaP-like 28.5 53 0.0011 18.3 1.8 33 60-92 3-37 (44)
275 PF02617 ClpS: ATP-dependent C 28.3 61 0.0013 20.4 2.4 34 57-90 47-81 (82)
276 cd04904 ACT_AAAH ACT domain of 28.1 1.5E+02 0.0032 18.1 7.8 50 28-79 13-65 (74)
277 cd04882 ACT_Bt0572_2 C-termina 28.1 1.2E+02 0.0027 17.2 5.7 49 30-81 14-63 (65)
278 KOG0226 RNA-binding proteins [ 28.1 31 0.00066 27.2 1.0 74 16-90 97-173 (290)
279 COG5470 Uncharacterized conser 28.1 1.3E+02 0.0028 19.9 3.7 19 56-74 52-70 (96)
280 PF01842 ACT: ACT domain; Int 27.8 1.3E+02 0.0027 17.2 5.4 47 28-77 13-61 (66)
281 PF13721 SecD-TM1: SecD export 27.8 1.9E+02 0.004 19.2 7.0 60 14-81 30-93 (101)
282 PRK06131 dihydroxy-acid dehydr 27.6 3.6E+02 0.0078 24.1 7.5 35 58-95 402-438 (571)
283 KOG1635 Peptide methionine sul 27.4 2.3E+02 0.0051 21.0 5.4 61 16-80 76-138 (191)
284 PF08442 ATP-grasp_2: ATP-gras 27.2 1.7E+02 0.0038 22.0 5.0 54 27-83 25-81 (202)
285 PRK12450 foldase protein PrsA; 27.2 1.2E+02 0.0026 24.5 4.4 39 26-78 132-170 (309)
286 KOG1232 Proteins containing th 27.1 81 0.0018 26.6 3.3 52 22-74 231-286 (511)
287 PF02829 3H: 3H domain; Inter 27.0 1.9E+02 0.0042 19.1 5.6 52 26-80 8-59 (98)
288 PF01282 Ribosomal_S24e: Ribos 26.9 1.8E+02 0.0038 18.6 6.4 47 25-72 11-62 (84)
289 PF03389 MobA_MobL: MobA/MobL 26.5 1.7E+02 0.0036 22.4 4.8 49 16-67 68-124 (216)
290 COG5594 Uncharacterized integr 26.5 81 0.0018 29.1 3.5 35 57-92 357-391 (827)
291 COG0079 HisC Histidinol-phosph 26.4 1.3E+02 0.0029 24.8 4.6 50 15-75 146-199 (356)
292 PF14401 RLAN: RimK-like ATPgr 26.4 1.1E+02 0.0023 22.1 3.6 59 15-73 87-146 (153)
293 PLN02655 ent-kaurene oxidase 26.4 1.4E+02 0.003 25.3 4.9 49 19-76 9-60 (466)
294 cd04880 ACT_AAAH-PDT-like ACT 26.3 1.5E+02 0.0034 17.8 6.5 51 28-79 12-66 (75)
295 PRK13259 regulatory protein Sp 26.3 1E+02 0.0023 20.3 3.1 26 41-66 2-27 (94)
296 PF01762 Galactosyl_T: Galacto 26.2 1.1E+02 0.0023 22.6 3.7 36 14-49 20-58 (195)
297 cd04908 ACT_Bt0572_1 N-termina 26.1 1.5E+02 0.0032 17.4 8.2 49 28-81 14-63 (66)
298 PF05573 NosL: NosL; InterPro 26.1 68 0.0015 22.8 2.5 23 57-79 114-136 (149)
299 PRK11863 N-acetyl-gamma-glutam 25.9 2.4E+02 0.0052 23.0 5.8 33 16-48 210-245 (313)
300 PF13820 Nucleic_acid_bd: Puta 25.4 1.2E+02 0.0027 21.8 3.7 60 16-79 5-67 (149)
301 PF06014 DUF910: Bacterial pro 25.4 57 0.0012 19.7 1.6 18 28-45 3-20 (62)
302 COG5236 Uncharacterized conser 25.3 2.1E+02 0.0045 23.8 5.2 52 28-87 263-314 (493)
303 COG0445 GidA Flavin-dependent 25.0 1.3E+02 0.0029 26.7 4.4 41 10-50 296-336 (621)
304 PF08206 OB_RNB: Ribonuclease 24.6 17 0.00037 21.3 -0.7 37 56-93 7-44 (58)
305 PF06130 PduL: Propanediol uti 24.5 1.8E+02 0.004 18.0 4.1 30 18-47 4-33 (71)
306 PRK11633 cell division protein 24.5 2.5E+02 0.0055 21.7 5.5 72 14-87 148-221 (226)
307 PF14893 PNMA: PNMA 23.4 69 0.0015 26.3 2.3 25 14-38 17-41 (331)
308 PF15643 Tox-PL-2: Papain fold 23.1 79 0.0017 21.0 2.1 30 62-91 17-46 (100)
309 PLN02968 Probable N-acetyl-gam 23.0 1.7E+02 0.0036 24.6 4.5 31 17-48 280-311 (381)
310 PF11004 Kdo_hydroxy: 3-deoxy- 22.7 1.4E+02 0.0029 23.9 3.7 44 12-58 18-64 (281)
311 KOG0862 Synaptobrevin/VAMP-lik 22.6 60 0.0013 24.8 1.7 13 55-67 107-119 (216)
312 cd05992 PB1 The PB1 domain is 22.5 1.9E+02 0.0042 17.5 5.1 53 21-78 14-69 (81)
313 PF12687 DUF3801: Protein of u 22.2 2.3E+02 0.005 21.5 4.8 54 30-85 45-98 (204)
314 cd04902 ACT_3PGDH-xct C-termin 22.0 1.8E+02 0.0039 17.0 5.0 52 27-80 11-65 (73)
315 PF10905 DUF2695: Protein of u 21.8 1.1E+02 0.0024 17.8 2.3 24 26-49 29-52 (53)
316 PF15407 Spo7_2_N: Sporulation 21.7 34 0.00074 21.0 0.2 23 14-36 26-48 (67)
317 PRK04405 prsA peptidylprolyl i 21.7 2.1E+02 0.0045 23.0 4.8 39 26-78 128-166 (298)
318 cd04883 ACT_AcuB C-terminal AC 21.6 1.8E+02 0.004 17.0 8.6 52 28-82 14-68 (72)
319 KOG2943 Predicted glyoxalase [ 21.6 2.2E+02 0.0047 22.5 4.5 30 53-82 205-238 (299)
320 PHA03075 glutaredoxin-like pro 21.4 1.8E+02 0.0038 20.1 3.6 32 31-65 58-89 (123)
321 PLN02971 tryptophan N-hydroxyl 21.4 2.5E+02 0.0053 24.5 5.5 57 19-85 67-128 (543)
322 PF13689 DUF4154: Domain of un 21.3 2.1E+02 0.0045 20.1 4.3 35 58-93 27-61 (145)
323 PF09162 Tap-RNA_bind: Tap, RN 21.2 1.9E+02 0.004 18.8 3.5 60 27-93 18-81 (88)
324 PF14026 DUF4242: Protein of u 21.1 2.2E+02 0.0048 17.7 7.2 62 18-82 3-71 (77)
325 KOG4357 Uncharacterized conser 21.1 3E+02 0.0065 19.2 7.5 25 59-83 115-139 (164)
326 COG0002 ArgC Acetylglutamate s 21.1 1.7E+02 0.0037 24.2 4.1 45 23-67 253-303 (349)
327 PRK13016 dihydroxy-acid dehydr 21.0 5.4E+02 0.012 23.0 7.3 35 58-95 407-443 (577)
328 TIGR00587 nfo apurinic endonuc 20.9 1.7E+02 0.0037 23.0 4.1 58 15-78 137-202 (274)
329 PF12993 DUF3877: Domain of un 20.7 1.7E+02 0.0036 21.6 3.6 21 25-45 107-127 (175)
330 PF04800 ETC_C1_NDUFA4: ETC co 20.7 1.7E+02 0.0036 19.6 3.4 26 55-81 45-71 (101)
331 PF08538 DUF1749: Protein of u 20.7 1.8E+02 0.0038 23.7 4.1 60 13-77 32-97 (303)
332 cd04887 ACT_MalLac-Enz ACT_Mal 20.7 2E+02 0.0043 17.0 6.6 60 18-78 2-62 (74)
333 PRK07868 acyl-CoA synthetase; 20.4 6.6E+02 0.014 24.0 8.4 58 26-83 868-930 (994)
334 PF09341 Pcc1: Transcription f 20.4 1.5E+02 0.0032 18.2 2.9 36 58-93 3-50 (76)
335 PF07045 DUF1330: Protein of u 20.3 1.2E+02 0.0026 18.0 2.5 42 32-75 11-57 (65)
No 1
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.94 E-value=3.5e-26 Score=166.51 Aligned_cols=100 Identities=52% Similarity=0.827 Sum_probs=92.2
Q ss_pred CCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCc
Q 029300 1 MSHFGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (195)
Q Consensus 1 ~~~~~~~~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~ 80 (195)
|++.+ +||++...++|.|-||.+.++.++|..+|++||.|.+|.|+.++.|++++|||||.|....+|+.||++|+|.
T Consensus 1 MS~g~--~PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~ 78 (256)
T KOG4207|consen 1 MSYGR--PPPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGA 78 (256)
T ss_pred CCCCC--CCCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcce
Confidence 66665 3778888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcEEEEEecccCCCchhcc
Q 029300 81 VVDGREITVQFAKYGPNAEKIQ 102 (195)
Q Consensus 81 ~~~g~~l~v~~a~~~~~~~~~~ 102 (195)
+|+|+.|.|++|+.........
T Consensus 79 ~ldgRelrVq~arygr~~d~~~ 100 (256)
T KOG4207|consen 79 VLDGRELRVQMARYGRPSDLPH 100 (256)
T ss_pred eeccceeeehhhhcCCCccccc
Confidence 9999999999999887754433
No 2
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=7.3e-23 Score=145.63 Aligned_cols=79 Identities=33% Similarity=0.542 Sum_probs=73.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
-+++|||+||+..+++.+|+.+|..||+|..|+|..++ .|||||+|++..+|+.|+..|+|..|+|..|.|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 37899999999999999999999999999999998764 3999999999999999999999999999999999998
Q ss_pred cCCC
Q 029300 94 YGPN 97 (195)
Q Consensus 94 ~~~~ 97 (195)
..+.
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6554
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.88 E-value=1.3e-21 Score=140.05 Aligned_cols=86 Identities=33% Similarity=0.530 Sum_probs=80.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
....++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 029300 92 AKYGPN 97 (195)
Q Consensus 92 a~~~~~ 97 (195)
+...+.
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 976544
No 4
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=1.2e-20 Score=144.49 Aligned_cols=82 Identities=32% Similarity=0.555 Sum_probs=78.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
.+-+||||+-|+++++|..|+..|..||+|+.|.|+.++.||+++|||||+|+.+.++..|.+..+|.+|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 029300 93 KY 94 (195)
Q Consensus 93 ~~ 94 (195)
..
T Consensus 179 Rg 180 (335)
T KOG0113|consen 179 RG 180 (335)
T ss_pred cc
Confidence 54
No 5
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.83 E-value=3.3e-20 Score=126.86 Aligned_cols=93 Identities=28% Similarity=0.532 Sum_probs=87.6
Q ss_pred CCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecC
Q 029300 5 GKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (195)
Q Consensus 5 ~~~~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 84 (195)
+.++|+...++++|||++++..+++++|.+.|..||+|++|.|..+..||..+|||+|+|++.++|++||.+|||..|.|
T Consensus 62 ~~pgPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~ 141 (170)
T KOG0130|consen 62 MRPGPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG 141 (170)
T ss_pred cCCCCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC
Confidence 45788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecccCCC
Q 029300 85 REITVQFAKYGPN 97 (195)
Q Consensus 85 ~~l~v~~a~~~~~ 97 (195)
+.|.|.|+-..++
T Consensus 142 q~v~VDw~Fv~gp 154 (170)
T KOG0130|consen 142 QNVSVDWCFVKGP 154 (170)
T ss_pred CceeEEEEEecCC
Confidence 9999999975443
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.82 E-value=1.8e-19 Score=147.01 Aligned_cols=84 Identities=31% Similarity=0.481 Sum_probs=79.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
..+.+|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 34557999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred ccCC
Q 029300 93 KYGP 96 (195)
Q Consensus 93 ~~~~ 96 (195)
..+.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 7554
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.81 E-value=1.8e-19 Score=145.94 Aligned_cols=86 Identities=28% Similarity=0.456 Sum_probs=80.7
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
+.+....++|||+|||+++++++|+++|..||+|+.|.|+.++.++.++|||||+|.++++|+.||+.||+..|.+++|+
T Consensus 101 ~~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~ 180 (346)
T TIGR01659 101 NDTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLK 180 (346)
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceee
Confidence 34556688999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEeccc
Q 029300 89 VQFAKY 94 (195)
Q Consensus 89 v~~a~~ 94 (195)
|.++++
T Consensus 181 V~~a~p 186 (346)
T TIGR01659 181 VSYARP 186 (346)
T ss_pred eecccc
Confidence 999865
No 8
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=2.2e-19 Score=121.76 Aligned_cols=84 Identities=29% Similarity=0.520 Sum_probs=79.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
...+++|||+||...++|++|.++|+++|+|..|.|-.++.+..+.|||||+|.+.++|+.||..++|+.|+.++|.|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 029300 92 AKYG 95 (195)
Q Consensus 92 a~~~ 95 (195)
...-
T Consensus 113 D~GF 116 (153)
T KOG0121|consen 113 DAGF 116 (153)
T ss_pred cccc
Confidence 8643
No 9
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.78 E-value=1.5e-18 Score=109.02 Aligned_cols=70 Identities=33% Similarity=0.697 Sum_probs=66.6
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 18 l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
|||+|||..+++++|.++|.+||.|..+.+..+ .++..+++|||+|.+.++|+.|++.|||..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999887 5788999999999999999999999999999999885
No 10
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=9.9e-19 Score=130.67 Aligned_cols=83 Identities=34% Similarity=0.575 Sum_probs=79.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
.+.++|-|.||+.++++.+|.+||.+||.|..|.|..++.||.++|||||.|.+.++|++||..|||.-++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 029300 93 KYG 95 (195)
Q Consensus 93 ~~~ 95 (195)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 874
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.78 E-value=1.8e-18 Score=141.21 Aligned_cols=82 Identities=29% Similarity=0.519 Sum_probs=78.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
.++|||+|||..+++++|+++|..||+|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|.|+.|.|.|+++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 56899999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred CC
Q 029300 95 GP 96 (195)
Q Consensus 95 ~~ 96 (195)
..
T Consensus 83 ~~ 84 (352)
T TIGR01661 83 SS 84 (352)
T ss_pred cc
Confidence 43
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.74 E-value=1.5e-17 Score=134.80 Aligned_cols=84 Identities=37% Similarity=0.575 Sum_probs=77.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecC--cEEEEEe
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG--REITVQF 91 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~ 91 (195)
..++|||+|||..+++++|+++|.+||.|+.|.|+.++.+++++|||||+|.+.++|++||+.||+..|.+ ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999998899999999999999999999999999999866 6899999
Q ss_pred cccCCC
Q 029300 92 AKYGPN 97 (195)
Q Consensus 92 a~~~~~ 97 (195)
++....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 876443
No 13
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.73 E-value=4e-17 Score=102.77 Aligned_cols=70 Identities=34% Similarity=0.706 Sum_probs=64.6
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 18 l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
|||+|||+.+++++|.++|..||.|..|.+..++. +..+++|||+|.+.++|+.|++.+++..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 88999999999999999999999999999999874
No 14
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.70 E-value=2.8e-17 Score=122.39 Aligned_cols=79 Identities=27% Similarity=0.572 Sum_probs=73.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
-++|||+||++++..+.|..+|++||+|++..|+.++.+|.++||+||+|.+.+.|+.|++. -+-.|+|++..|.+|-.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 36899999999999999999999999999999999999999999999999999999999995 45688999999999865
No 15
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.70 E-value=1.8e-18 Score=123.98 Aligned_cols=87 Identities=31% Similarity=0.568 Sum_probs=80.9
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEE
Q 029300 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (195)
Q Consensus 8 ~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 87 (195)
....-.++..|||+|||+.+||.||..+|++||+|+.|.|+.++.||+++||||+.|++.....-|+..|||..|.|+.|
T Consensus 28 WH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRti 107 (219)
T KOG0126|consen 28 WHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTI 107 (219)
T ss_pred hhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeE
Confidence 34455778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccc
Q 029300 88 TVQFAKY 94 (195)
Q Consensus 88 ~v~~a~~ 94 (195)
.|.....
T Consensus 108 rVDHv~~ 114 (219)
T KOG0126|consen 108 RVDHVSN 114 (219)
T ss_pred Eeeeccc
Confidence 9987643
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.70 E-value=9.5e-17 Score=137.09 Aligned_cols=85 Identities=18% Similarity=0.352 Sum_probs=79.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
..++|||+|||+.+++++|+++|+.||.|..|.|..++.++..+|||||+|.+.++|..||+.||+..|+|+.|.|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 34789999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred cCCCc
Q 029300 94 YGPNA 98 (195)
Q Consensus 94 ~~~~~ 98 (195)
..+..
T Consensus 283 ~pP~~ 287 (612)
T TIGR01645 283 TPPDA 287 (612)
T ss_pred CCccc
Confidence 65543
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.70 E-value=1.5e-16 Score=135.77 Aligned_cols=83 Identities=25% Similarity=0.401 Sum_probs=78.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
..++|||+|||..+++++|.++|..||.|..|.|+.+..+|.++|||||+|.+.++|+.||+.|||..|.|..|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45789999999999999999999999999999999988899999999999999999999999999999999999999987
Q ss_pred cCC
Q 029300 94 YGP 96 (195)
Q Consensus 94 ~~~ 96 (195)
...
T Consensus 374 ~~~ 376 (509)
T TIGR01642 374 VGA 376 (509)
T ss_pred cCC
Confidence 543
No 18
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.69 E-value=2e-16 Score=121.30 Aligned_cols=76 Identities=21% Similarity=0.324 Sum_probs=70.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
.++|||+|||+.+++++|+++|+.||.|..|.|+.+.. ..|||||+|.+.++|+.||. |||..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 56899999999999999999999999999999987653 45899999999999999996 999999999999999863
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.69 E-value=2e-16 Score=133.41 Aligned_cols=80 Identities=36% Similarity=0.648 Sum_probs=76.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
..+|||+|||..+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||..|||..|.|++|.|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 68999999999999999999999999999999999988889999999999999999999999999999999999999863
No 20
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=2e-16 Score=113.98 Aligned_cols=81 Identities=26% Similarity=0.436 Sum_probs=73.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
...++|||+|||.++-+.+|+++|.+||.|.+|.|...+ .+..||||+|++..+|+.||..-+|..++|..|.|+|+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 457899999999999999999999999999999986543 23489999999999999999999999999999999999
Q ss_pred ccCC
Q 029300 93 KYGP 96 (195)
Q Consensus 93 ~~~~ 96 (195)
....
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 8665
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.69 E-value=1.5e-16 Score=135.84 Aligned_cols=81 Identities=28% Similarity=0.535 Sum_probs=76.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
...++|||+|||+.+++++|.++|.+||.|..|.|+.++.+++++|||||+|.+.++|+.||+.|||..|+|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred c
Q 029300 93 K 93 (195)
Q Consensus 93 ~ 93 (195)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 22
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=3.2e-16 Score=102.61 Aligned_cols=80 Identities=33% Similarity=0.532 Sum_probs=72.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
+..+..|||.|||+.+|.+++.++|.+||.|..|.|-..+. .+|.|||.|++..+|..|+.+|+|..+++..|.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 34567899999999999999999999999999999976554 459999999999999999999999999999999988
Q ss_pred ccc
Q 029300 92 AKY 94 (195)
Q Consensus 92 a~~ 94 (195)
-.+
T Consensus 92 yq~ 94 (124)
T KOG0114|consen 92 YQP 94 (124)
T ss_pred cCH
Confidence 654
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.67 E-value=3.9e-16 Score=131.65 Aligned_cols=82 Identities=34% Similarity=0.560 Sum_probs=77.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
..+..+|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||. |+|..|.|.+|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3557899999999999999999999999999999999998899999999999999999999998 899999999999998
Q ss_pred ccc
Q 029300 92 AKY 94 (195)
Q Consensus 92 a~~ 94 (195)
+..
T Consensus 165 ~~~ 167 (457)
T TIGR01622 165 SQA 167 (457)
T ss_pred cch
Confidence 754
No 24
>smart00362 RRM_2 RNA recognition motif.
Probab=99.67 E-value=7.1e-16 Score=96.42 Aligned_cols=72 Identities=40% Similarity=0.741 Sum_probs=66.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
+|||.|||..+++++|.++|.+||.|..+.+..++ +.+.++|||+|.+.++|+.|+..|++..|.|..|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999988775 6788999999999999999999999999999998873
No 25
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.66 E-value=1.8e-16 Score=113.85 Aligned_cols=83 Identities=29% Similarity=0.479 Sum_probs=78.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
+.....||||+||+..++++.|+++|-+.|+|+.|.++.++.+...+|||||+|.++++|+-|++.||...|.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecc
Q 029300 91 FAK 93 (195)
Q Consensus 91 ~a~ 93 (195)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 886
No 26
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=5.6e-16 Score=117.63 Aligned_cols=80 Identities=26% Similarity=0.455 Sum_probs=74.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
...+++|||+||+..+++++|...|..||.|.+|.|.+++ |||||.|++.|.|..||..||+.+|.|+.++|.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 3568999999999999999999999999999999999876 9999999999999999999999999999999999
Q ss_pred cccCCC
Q 029300 92 AKYGPN 97 (195)
Q Consensus 92 a~~~~~ 97 (195)
-+....
T Consensus 235 GKe~~~ 240 (321)
T KOG0148|consen 235 GKEGDD 240 (321)
T ss_pred cccCCC
Confidence 986543
No 27
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.66 E-value=8.8e-16 Score=116.08 Aligned_cols=77 Identities=23% Similarity=0.321 Sum_probs=69.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
..+++|||+||++.+|+++|++||+.||+|..|.|+.+. ...+||||+|.+.++|+.||. |||..|.++.|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 346899999999999999999999999999999999874 344899999999999999997 9999999999999875
Q ss_pred c
Q 029300 93 K 93 (195)
Q Consensus 93 ~ 93 (195)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 4
No 28
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.66 E-value=5.9e-16 Score=133.74 Aligned_cols=80 Identities=26% Similarity=0.525 Sum_probs=76.1
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecccCC
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYGP 96 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 96 (195)
+|||+|||+.+|+++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|+.||+.||+..|.|+.|.|.|+...+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 69999999999999999999999999999999999899999999999999999999999999999999999999986443
No 29
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=3e-16 Score=119.09 Aligned_cols=86 Identities=24% Similarity=0.513 Sum_probs=81.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
+....+.|||+-|...++.++|++.|.+||+|.+++|+.+..|++++||+||.|.+.++|+.||..|||.+|+++.|...
T Consensus 58 t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTN 137 (321)
T KOG0148|consen 58 TSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTN 137 (321)
T ss_pred ccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecc
Confidence 34446789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCC
Q 029300 91 FAKYGP 96 (195)
Q Consensus 91 ~a~~~~ 96 (195)
||.-++
T Consensus 138 WATRKp 143 (321)
T KOG0148|consen 138 WATRKP 143 (321)
T ss_pred ccccCc
Confidence 998776
No 30
>PLN03213 repressor of silencing 3; Provisional
Probab=99.66 E-value=5e-16 Score=126.62 Aligned_cols=78 Identities=26% Similarity=0.359 Sum_probs=71.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccH--HHHHHHHHhhCCceecCcEEEEE
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYA--DEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~--~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
..+..||||||++.+++++|..+|..||.|..|.|+. .+| +|||||+|.+. .++.+||..|||..|.|+.|+|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3457899999999999999999999999999999984 466 89999999987 78999999999999999999999
Q ss_pred eccc
Q 029300 91 FAKY 94 (195)
Q Consensus 91 ~a~~ 94 (195)
.|++
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 9975
No 31
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=3.5e-16 Score=121.50 Aligned_cols=79 Identities=42% Similarity=0.585 Sum_probs=73.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
...|+|.|||+..-+.||..+|.+||.|.+|.|+.+ ...+|||+||+|++.++|+.|-++|||..|.|++|.|..|..
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 468999999999999999999999999999999987 345789999999999999999999999999999999999875
Q ss_pred C
Q 029300 95 G 95 (195)
Q Consensus 95 ~ 95 (195)
.
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 3
No 32
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=7.2e-16 Score=124.08 Aligned_cols=81 Identities=32% Similarity=0.510 Sum_probs=77.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCcee-cCcEEEEEe
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV-DGREITVQF 91 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~-~g~~l~v~~ 91 (195)
..++-|||+.||.++.|++|..+|++.|+|-++.|+.++.+|.++|||||+|.+.++|+.||+.||+.+| .|+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 5688999999999999999999999999999999999999999999999999999999999999999988 789998887
Q ss_pred cc
Q 029300 92 AK 93 (195)
Q Consensus 92 a~ 93 (195)
+.
T Consensus 161 Sv 162 (506)
T KOG0117|consen 161 SV 162 (506)
T ss_pred ee
Confidence 64
No 33
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.64 E-value=6.9e-16 Score=131.53 Aligned_cols=79 Identities=32% Similarity=0.481 Sum_probs=71.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceec-CcEEEEEe
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD-GREITVQF 91 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~ 91 (195)
...++|||+|||.++++++|.++|.+||.|..|.|+.+ .+|.++|||||+|.+.++|+.||+.||+..|. |+.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34689999999999999999999999999999999998 68999999999999999999999999999884 67766654
Q ss_pred c
Q 029300 92 A 92 (195)
Q Consensus 92 a 92 (195)
+
T Consensus 135 S 135 (578)
T TIGR01648 135 S 135 (578)
T ss_pred c
Confidence 4
No 34
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.9e-16 Score=116.95 Aligned_cols=85 Identities=29% Similarity=0.452 Sum_probs=80.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
..-.+|||++|..++++.-|...|-+||.|+.|.++.+..+++.+|||||+|...++|.+||..||+.+|.|+.|.|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 029300 93 KYGPN 97 (195)
Q Consensus 93 ~~~~~ 97 (195)
++...
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 87543
No 35
>smart00360 RRM RNA recognition motif.
Probab=99.63 E-value=1.8e-15 Score=94.20 Aligned_cols=71 Identities=41% Similarity=0.738 Sum_probs=66.5
Q ss_pred EeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 20 VLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 20 V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
|+|||..+++++|..+|.+||.|..+.+..++.++.++|+|||+|.+.++|..|+..|++..+.|..|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999998887778899999999999999999999999999999998873
No 36
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.63 E-value=2.1e-15 Score=130.31 Aligned_cols=83 Identities=30% Similarity=0.500 Sum_probs=77.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
..+++|||+||+..+++++|.++|++||.|..|.|+.+ .+|.++|||||+|.+.++|++|+..|||..|+|++|.|.+|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 34678999999999999999999999999999999988 58999999999999999999999999999999999999999
Q ss_pred ccCC
Q 029300 93 KYGP 96 (195)
Q Consensus 93 ~~~~ 96 (195)
..+.
T Consensus 362 ~~k~ 365 (562)
T TIGR01628 362 QRKE 365 (562)
T ss_pred cCcH
Confidence 7643
No 37
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.61 E-value=5.1e-15 Score=126.29 Aligned_cols=77 Identities=34% Similarity=0.462 Sum_probs=70.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcC--CceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKY--GKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~--G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
...+|||+||+..+++++|+++|++| |.|+.|.++. +||||+|.+.++|++||+.||+..|+|+.|.|.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 9999997753 6999999999999999999999999999999999
Q ss_pred cccCCCc
Q 029300 92 AKYGPNA 98 (195)
Q Consensus 92 a~~~~~~ 98 (195)
+++....
T Consensus 304 Akp~~~~ 310 (578)
T TIGR01648 304 AKPVDKK 310 (578)
T ss_pred ccCCCcc
Confidence 9876543
No 38
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=4.9e-15 Score=112.09 Aligned_cols=87 Identities=29% Similarity=0.465 Sum_probs=80.4
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
|.....++.|||-||.++++|..|+++|.+||.|..|+|+.+..+.+++||+||.+.+.++|..||..|||..++++.|.
T Consensus 272 p~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQ 351 (360)
T KOG0145|consen 272 PGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 351 (360)
T ss_pred CCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEE
Confidence 33445578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccC
Q 029300 89 VQFAKYG 95 (195)
Q Consensus 89 v~~a~~~ 95 (195)
|.|...+
T Consensus 352 VsFKtnk 358 (360)
T KOG0145|consen 352 VSFKTNK 358 (360)
T ss_pred EEEecCC
Confidence 9997543
No 39
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.61 E-value=9.3e-15 Score=91.74 Aligned_cols=74 Identities=43% Similarity=0.734 Sum_probs=68.0
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
+|+|+|||+.+++++|.++|..||.|..+.+..++.+ .+.++|||+|.+.++|..|++.+++..+.|..|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999877644 6679999999999999999999999999999998864
No 40
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.61 E-value=5e-15 Score=115.60 Aligned_cols=80 Identities=43% Similarity=0.719 Sum_probs=76.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
.++|||+|||..+++++|.++|.+||.|..|.|..++.++..+|||||+|.+.++|..|+..|+|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999753
No 41
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=4.7e-15 Score=112.20 Aligned_cols=81 Identities=31% Similarity=0.525 Sum_probs=77.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
-+.|.|.-||..+|+++|+.+|...|+|+.|+++.++.+|++.||+||.|..+++|++|+..|||..+..+.|+|.||.+
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 029300 95 G 95 (195)
Q Consensus 95 ~ 95 (195)
.
T Consensus 121 S 121 (360)
T KOG0145|consen 121 S 121 (360)
T ss_pred C
Confidence 4
No 42
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.60 E-value=8.8e-15 Score=124.15 Aligned_cols=78 Identities=26% Similarity=0.333 Sum_probs=71.5
Q ss_pred CCCcEEEEeCCCC-CCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 13 RDTYSLLVLNITF-RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 13 ~~~~~l~V~nLp~-~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
.++++|||+|||+ .+++++|.++|+.||.|..|.|+.++ +|||||+|.+.++|+.||..|||..|.|++|.|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 3568999999998 69999999999999999999998753 48999999999999999999999999999999999
Q ss_pred cccC
Q 029300 92 AKYG 95 (195)
Q Consensus 92 a~~~ 95 (195)
++..
T Consensus 348 s~~~ 351 (481)
T TIGR01649 348 SKQQ 351 (481)
T ss_pred cccc
Confidence 8654
No 43
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.59 E-value=3.3e-15 Score=123.13 Aligned_cols=85 Identities=31% Similarity=0.599 Sum_probs=80.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecccC
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 95 (195)
+.|||+|||+++++++|..+|+..|.|..++++.|+.+|.++||||++|.+.++|+.|+..|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred CCchh
Q 029300 96 PNAEK 100 (195)
Q Consensus 96 ~~~~~ 100 (195)
+..+.
T Consensus 99 ~~~~~ 103 (435)
T KOG0108|consen 99 KNAER 103 (435)
T ss_pred chhHH
Confidence 55443
No 44
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.2e-14 Score=114.29 Aligned_cols=84 Identities=31% Similarity=0.525 Sum_probs=79.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
.++.+.|||+.|.+.++.++|.-+|+.||.|..|.|+.+..||.+..||||+|++.++|++|.-+|++..|+.+.|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 35578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 029300 92 AKYG 95 (195)
Q Consensus 92 a~~~ 95 (195)
+..-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 7643
No 45
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.3e-14 Score=119.59 Aligned_cols=81 Identities=36% Similarity=0.715 Sum_probs=74.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
-+.|+|.|||+.+...+|+.+|+.||.|.+|.|+..+ .|..+|||||+|.+..+|..||+.||+..|+|++|.|.||-.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 5789999999999999999999999999999999776 455559999999999999999999999999999999999976
Q ss_pred CC
Q 029300 95 GP 96 (195)
Q Consensus 95 ~~ 96 (195)
+.
T Consensus 196 Kd 197 (678)
T KOG0127|consen 196 KD 197 (678)
T ss_pred cc
Confidence 54
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.56 E-value=1.9e-14 Score=122.07 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=67.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhh--CCceecCcEEEEEec
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL--DGRVVDGREITVQFA 92 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l--~g~~~~g~~l~v~~a 92 (195)
+.+|||+|||+.+++++|.++|++||.|..|.|+.++ +||||+|++.++|+.||+.| ++..|.|++|.|+|+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k------~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK------RQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC------CEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 5789999999999999999999999999999988643 89999999999999999864 788999999999998
Q ss_pred cc
Q 029300 93 KY 94 (195)
Q Consensus 93 ~~ 94 (195)
..
T Consensus 76 ~~ 77 (481)
T TIGR01649 76 TS 77 (481)
T ss_pred CC
Confidence 64
No 47
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=4e-15 Score=119.38 Aligned_cols=85 Identities=27% Similarity=0.487 Sum_probs=76.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCc-ee--cCcEEEE
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR-VV--DGREITV 89 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~-~~--~g~~l~v 89 (195)
.++++|||+.|+..++|.+|.++|.+||.|++|.|+.+. .+.++|||||.|.+.+.|..||+.|||. .+ +..+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 347899999999999999999999999999999999986 7899999999999999999999999998 44 4578999
Q ss_pred EecccCCCc
Q 029300 90 QFAKYGPNA 98 (195)
Q Consensus 90 ~~a~~~~~~ 98 (195)
.||.+....
T Consensus 201 kFADtqkdk 209 (510)
T KOG0144|consen 201 KFADTQKDK 209 (510)
T ss_pred EecccCCCc
Confidence 999876543
No 48
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=2.3e-14 Score=118.02 Aligned_cols=86 Identities=35% Similarity=0.575 Sum_probs=77.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhh-----CC-ceecC
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL-----DG-RVVDG 84 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l-----~g-~~~~g 84 (195)
+...+.+|||.|||+++++++|.++|.+||+|..+.|+.++.|+.++|.|||.|.+..+|+.||.+. .| ..|+|
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 4455689999999999999999999999999999999999999999999999999999999999976 23 57899
Q ss_pred cEEEEEecccCC
Q 029300 85 REITVQFAKYGP 96 (195)
Q Consensus 85 ~~l~v~~a~~~~ 96 (195)
+.|+|..|-+..
T Consensus 368 R~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 368 RLLKVTLAVTRK 379 (678)
T ss_pred cEEeeeeccchH
Confidence 999999986543
No 49
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.55 E-value=4.1e-14 Score=85.10 Aligned_cols=56 Identities=43% Similarity=0.861 Sum_probs=50.9
Q ss_pred HHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 32 LFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 32 l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
|.++|++||+|..|.+..+. .++|||+|.+.++|+.|+..|||..|.|++|.|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997653 489999999999999999999999999999999986
No 50
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=7.5e-15 Score=111.50 Aligned_cols=85 Identities=21% Similarity=0.382 Sum_probs=80.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
..++|.|||-.||.+..+.+|..+|-.||.|+..+|..+..|..+++|+||.|.|...|++||.+|||+.|+-+.|+|++
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 029300 92 AKYGP 96 (195)
Q Consensus 92 a~~~~ 96 (195)
..++.
T Consensus 362 KRPkd 366 (371)
T KOG0146|consen 362 KRPKD 366 (371)
T ss_pred cCccc
Confidence 87653
No 51
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.9e-14 Score=115.98 Aligned_cols=76 Identities=36% Similarity=0.503 Sum_probs=70.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
-..|||.||+..+|++.|+++|++||.|..|+.+. .||||.|.+.++|.+||+.|||..|+|..|.|.+||+
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r--------DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR--------DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeeccc--------ceeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 46799999999999999999999999999998875 4899999999999999999999999999999999998
Q ss_pred CCCc
Q 029300 95 GPNA 98 (195)
Q Consensus 95 ~~~~ 98 (195)
....
T Consensus 331 ~~k~ 334 (506)
T KOG0117|consen 331 VDKK 334 (506)
T ss_pred hhhh
Confidence 5543
No 52
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2.5e-14 Score=114.89 Aligned_cols=83 Identities=31% Similarity=0.523 Sum_probs=74.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCce-ec--CcEEEE
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV-VD--GREITV 89 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~-~~--g~~l~v 89 (195)
.+.-+|||+.||..++|.||+++|++||.|.+|.|++|+.++..+|||||.|.+.++|.+|+.+|++.. |. ..+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 345689999999999999999999999999999999999999999999999999999999999998774 43 467888
Q ss_pred EecccC
Q 029300 90 QFAKYG 95 (195)
Q Consensus 90 ~~a~~~ 95 (195)
.+|...
T Consensus 112 k~Ad~E 117 (510)
T KOG0144|consen 112 KYADGE 117 (510)
T ss_pred cccchh
Confidence 888653
No 53
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.52 E-value=1.6e-14 Score=110.74 Aligned_cols=72 Identities=31% Similarity=0.506 Sum_probs=68.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecccC
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 95 (195)
.+|||+|||..+++++|+.+|++||+|++|.|+++ ||||..++...|+.||..|||..|+|..|+|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999875 8999999999999999999999999999999998865
No 54
>smart00361 RRM_1 RNA recognition motif.
Probab=99.52 E-value=7.9e-14 Score=87.74 Aligned_cols=61 Identities=26% Similarity=0.501 Sum_probs=54.1
Q ss_pred HHHHHHHhh----cCCceeEEE-eccCCCC--CCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEE
Q 029300 29 ADDLFPLFE----KYGKVVDVF-IPRDRRT--GDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (195)
Q Consensus 29 ~~~l~~~f~----~~G~i~~v~-~~~~~~~--g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 89 (195)
+++|.++|. +||.|..|. |..++.+ +.++|||||+|.+.++|+.|+..|||..|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999985 5555555 889999999999999999999999999999999986
No 55
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1.9e-14 Score=113.55 Aligned_cols=79 Identities=29% Similarity=0.567 Sum_probs=75.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
.|.|||+.|.+++.|+.|...|..||+|+.|.+.+++.|++++|||||+|+-++.|+-|++.|||..++|+.|+|....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999998543
No 56
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.49 E-value=4.4e-14 Score=116.48 Aligned_cols=77 Identities=36% Similarity=0.628 Sum_probs=74.0
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 18 l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
|||+||++++++++|..+|+.||.|..|.++.+..||.++||+||+|.+.++|..|++.|||.+|.|+.|+|.....
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999987653
No 57
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.48 E-value=2.4e-13 Score=109.54 Aligned_cols=82 Identities=33% Similarity=0.447 Sum_probs=74.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHh-hcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLF-EKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f-~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
.....+||+|||+++.|++|+++| ++.|+|++|.|..+. .|+.+|||.|+|+++|.+++|++.||...+.|++|+|.-
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 445679999999999999999999 578999999999885 899999999999999999999999999999999999987
Q ss_pred cccC
Q 029300 92 AKYG 95 (195)
Q Consensus 92 a~~~ 95 (195)
....
T Consensus 121 d~d~ 124 (608)
T KOG4212|consen 121 DHDE 124 (608)
T ss_pred cCch
Confidence 6543
No 58
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.47 E-value=3.1e-13 Score=100.57 Aligned_cols=90 Identities=27% Similarity=0.420 Sum_probs=77.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHH----HhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFP----LFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~----~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 86 (195)
...++.||||.||+..+..++|+. +|++||.|..|.... +.+.+|.|||.|.+.+.|-.|+.+|+|..|.|++
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~ 81 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKP 81 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCch
Confidence 344556999999999999998887 999999999998864 5678899999999999999999999999999999
Q ss_pred EEEEecccCCCchhccc
Q 029300 87 ITVQFAKYGPNAEKIQQ 103 (195)
Q Consensus 87 l~v~~a~~~~~~~~~~~ 103 (195)
+.|+||+.+...-...+
T Consensus 82 mriqyA~s~sdii~~~~ 98 (221)
T KOG4206|consen 82 MRIQYAKSDSDIIAQAP 98 (221)
T ss_pred hheecccCccchhhccC
Confidence 99999987665444433
No 59
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.45 E-value=4.1e-13 Score=98.49 Aligned_cols=87 Identities=20% Similarity=0.377 Sum_probs=78.6
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcC-CceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEE
Q 029300 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKY-GKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~-G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 87 (195)
.+.......++|..||..+.+.+|..+|.++ |.|..+.+..++.||.++|||||+|++.+.|+-|.+.||+..|.++.|
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 3444556679999999999999999999888 678888888999999999999999999999999999999999999999
Q ss_pred EEEecccC
Q 029300 88 TVQFAKYG 95 (195)
Q Consensus 88 ~v~~a~~~ 95 (195)
.|.+-.+.
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 99998776
No 60
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.43 E-value=6.1e-13 Score=113.70 Aligned_cols=75 Identities=21% Similarity=0.320 Sum_probs=61.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcC------------CceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCC
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKY------------GKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~------------G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g 79 (195)
.....+|||+|||+.+++++|.++|.++ +.|..+.+. ..+|||||+|.+.++|+.||. |||
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al~-l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAMA-LDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhhc-CCC
Confidence 3456799999999999999999999875 234444443 345999999999999999995 999
Q ss_pred ceecCcEEEEEecc
Q 029300 80 RVVDGREITVQFAK 93 (195)
Q Consensus 80 ~~~~g~~l~v~~a~ 93 (195)
..|.|..|+|....
T Consensus 245 ~~~~g~~l~v~r~~ 258 (509)
T TIGR01642 245 IIYSNVFLKIRRPH 258 (509)
T ss_pred eEeeCceeEecCcc
Confidence 99999999997543
No 61
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.40 E-value=6.7e-13 Score=95.60 Aligned_cols=85 Identities=26% Similarity=0.445 Sum_probs=76.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeE-EEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVD-VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~-v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
...+..|||+||.+++++..|.+.|+.||.|.. -.++.++.||.++|||||.|.+.+.+.+|+..|||..++..+|.|.
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 344678999999999999999999999998865 4778888899999999999999999999999999999999999999
Q ss_pred ecccCC
Q 029300 91 FAKYGP 96 (195)
Q Consensus 91 ~a~~~~ 96 (195)
++..+.
T Consensus 173 ya~k~~ 178 (203)
T KOG0131|consen 173 YAFKKD 178 (203)
T ss_pred EEEecC
Confidence 997543
No 62
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.40 E-value=3.3e-13 Score=103.66 Aligned_cols=75 Identities=32% Similarity=0.499 Sum_probs=70.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
....++|+|+||.+.++.++|...|++||+|++|.|++ +|+||.|+-.++|..|+..|||.+|.|+.|+|++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 34678999999999999999999999999999999976 5899999999999999999999999999999999
Q ss_pred ccc
Q 029300 92 AKY 94 (195)
Q Consensus 92 a~~ 94 (195)
+..
T Consensus 147 sts 149 (346)
T KOG0109|consen 147 STS 149 (346)
T ss_pred ecc
Confidence 863
No 63
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=2.9e-12 Score=100.56 Aligned_cols=86 Identities=21% Similarity=0.419 Sum_probs=75.1
Q ss_pred CCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHh-hCCce
Q 029300 3 HFGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR-LDGRV 81 (195)
Q Consensus 3 ~~~~~~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~-l~g~~ 81 (195)
.++...||+...-.+|||++|...+++.+|.++|.+||+|..|.+.... ++|||+|.+.+.|+.|++. +|...
T Consensus 216 ~~~~lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lv 289 (377)
T KOG0153|consen 216 SAGTLEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLV 289 (377)
T ss_pred cccccCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceee
Confidence 3455667777778899999999999999999999999999999987654 7999999999999988875 45557
Q ss_pred ecCcEEEEEeccc
Q 029300 82 VDGREITVQFAKY 94 (195)
Q Consensus 82 ~~g~~l~v~~a~~ 94 (195)
|+|..|+|.|..+
T Consensus 290 I~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 290 INGFRLKIKWGRP 302 (377)
T ss_pred ecceEEEEEeCCC
Confidence 8999999999987
No 64
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.35 E-value=2.3e-12 Score=110.07 Aligned_cols=79 Identities=27% Similarity=0.415 Sum_probs=72.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
++||||++|+..+++++|..+|+.||+|..|.|+.+. +||||.+....+|++||.+|++..+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 5799999999999999999999999999999998654 8999999999999999999999999999999999976
Q ss_pred CCCch
Q 029300 95 GPNAE 99 (195)
Q Consensus 95 ~~~~~ 99 (195)
.....
T Consensus 495 ~G~ks 499 (894)
T KOG0132|consen 495 KGPKS 499 (894)
T ss_pred CCcch
Confidence 54443
No 65
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=9.2e-12 Score=101.80 Aligned_cols=78 Identities=23% Similarity=0.565 Sum_probs=71.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecccC
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 95 (195)
..|||.||++.++..+|.++|+.||+|+.|+|..+. .| .+|| ||+|++++.|++||..|||..+.|+.|.|......
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 349999999999999999999999999999999885 44 8899 99999999999999999999999999999887654
Q ss_pred C
Q 029300 96 P 96 (195)
Q Consensus 96 ~ 96 (195)
.
T Consensus 154 ~ 154 (369)
T KOG0123|consen 154 E 154 (369)
T ss_pred h
Confidence 3
No 66
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.29 E-value=7.8e-12 Score=103.93 Aligned_cols=84 Identities=35% Similarity=0.489 Sum_probs=77.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
+..|||.+|...+-..+|++||++||+|+-.+|+.+..+...++|+||++.+.++|.+||+.|+-+.|.|+.|.|+-++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 46799999999999999999999999999999988876767789999999999999999999999999999999999986
Q ss_pred CCCc
Q 029300 95 GPNA 98 (195)
Q Consensus 95 ~~~~ 98 (195)
.+..
T Consensus 485 Ep~G 488 (940)
T KOG4661|consen 485 EPGG 488 (940)
T ss_pred Cccc
Confidence 5543
No 67
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=3.9e-12 Score=107.83 Aligned_cols=85 Identities=31% Similarity=0.545 Sum_probs=78.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
..++.|+|.|||+.++..+|+.+|..||.|..|.|+.....+.+.|||||+|-+..+|..|+.+|..+-|.|+.|+++||
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 33679999999999999999999999999999999887666778999999999999999999999999999999999999
Q ss_pred ccCCC
Q 029300 93 KYGPN 97 (195)
Q Consensus 93 ~~~~~ 97 (195)
+....
T Consensus 691 ~~d~~ 695 (725)
T KOG0110|consen 691 KSDNT 695 (725)
T ss_pred ccchH
Confidence 87654
No 68
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.27 E-value=1.3e-11 Score=99.65 Aligned_cols=77 Identities=29% Similarity=0.477 Sum_probs=69.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
..+..|+|||.|||.++||+.|++-|..||.|..+.|+. .|+.+| .|.|.++++|+.|+..|||..|.|+.|+|.
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 456678999999999999999999999999999998854 455655 899999999999999999999999999998
Q ss_pred ec
Q 029300 91 FA 92 (195)
Q Consensus 91 ~a 92 (195)
|.
T Consensus 607 y~ 608 (608)
T KOG4212|consen 607 YF 608 (608)
T ss_pred eC
Confidence 74
No 69
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=1.3e-11 Score=97.83 Aligned_cols=83 Identities=17% Similarity=0.348 Sum_probs=77.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
-+.|||..++++++++||+.+|+.||+|+.|.+...+..+.++||+||+|.+......||..||-+.++|+.|.|.-+-.
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 36899999999999999999999999999999999998899999999999999999999999999999999999987765
Q ss_pred CCC
Q 029300 95 GPN 97 (195)
Q Consensus 95 ~~~ 97 (195)
.|.
T Consensus 290 PP~ 292 (544)
T KOG0124|consen 290 PPD 292 (544)
T ss_pred CCc
Confidence 443
No 70
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.25 E-value=3.2e-11 Score=92.36 Aligned_cols=80 Identities=29% Similarity=0.490 Sum_probs=74.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
.++|+|.|||+.|++++|+++|..||.++.+.|.+++ .|.+.|.|-|.|...++|..||+.|||+.++|..|++.+...
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 4789999999999999999999999999999998886 889999999999999999999999999999999999988754
Q ss_pred C
Q 029300 95 G 95 (195)
Q Consensus 95 ~ 95 (195)
.
T Consensus 162 ~ 162 (243)
T KOG0533|consen 162 P 162 (243)
T ss_pred c
Confidence 3
No 71
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=2.7e-11 Score=102.85 Aligned_cols=78 Identities=35% Similarity=0.598 Sum_probs=70.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCC---CcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTG---DSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g---~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
++|||.||++.++.++|..+|..+|.|..|.|...+... .+.|||||+|.+.++|+.|++.|+|+.|+|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 349999999999999999999999999999887655321 23599999999999999999999999999999999999
Q ss_pred c
Q 029300 93 K 93 (195)
Q Consensus 93 ~ 93 (195)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 7
No 72
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=1.1e-11 Score=94.36 Aligned_cols=83 Identities=30% Similarity=0.532 Sum_probs=73.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCce-ecC--cEEEEE
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV-VDG--REITVQ 90 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~-~~g--~~l~v~ 90 (195)
+..+|||+.|...-.|+|+..+|..||.|.+|.+...+ .|.++|||||.|.+..+|+.||..|+|.. +-| ..|.|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 56789999999999999999999999999999998875 78999999999999999999999999984 444 568999
Q ss_pred ecccCCC
Q 029300 91 FAKYGPN 97 (195)
Q Consensus 91 ~a~~~~~ 97 (195)
|+.....
T Consensus 97 ~ADTdkE 103 (371)
T KOG0146|consen 97 FADTDKE 103 (371)
T ss_pred eccchHH
Confidence 9976543
No 73
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=8.6e-12 Score=93.57 Aligned_cols=72 Identities=28% Similarity=0.525 Sum_probs=66.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecccC
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 95 (195)
..|||++||+.+.+.+|+.||..||.|..|.|.. ||+||+|++..+|..|+..||+..|+|..|.|+|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 3599999999999999999999999999998854 78999999999999999999999999999999999853
No 74
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.20 E-value=1.5e-10 Score=86.20 Aligned_cols=88 Identities=15% Similarity=0.296 Sum_probs=71.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccC-CCCCCcccEEEEEEccHHHHHHHHHhhCCcee---cCcEEEEE
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRD-RRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV---DGREITVQ 90 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~-~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~---~g~~l~v~ 90 (195)
-.||||.+||.++...+|..+|..|-..+.+.|... +.....+-+|||+|.+..+|++|+++|||..| .+..|.|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 579999999999999999999998866655555432 22223457999999999999999999999999 47899999
Q ss_pred ecccCCCchhcc
Q 029300 91 FAKYGPNAEKIQ 102 (195)
Q Consensus 91 ~a~~~~~~~~~~ 102 (195)
+|+...+....+
T Consensus 114 lAKSNtK~kr~k 125 (284)
T KOG1457|consen 114 LAKSNTKRKRRK 125 (284)
T ss_pred ehhcCcccccCC
Confidence 999776654433
No 75
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=8.5e-12 Score=92.42 Aligned_cols=81 Identities=23% Similarity=0.256 Sum_probs=72.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
.+....||||+||-..++++-|.++|-+.|+|..|.|...+ .+..+ ||||.|.++....-|++.|||..+.+..|.|.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 34557899999999999999999999999999999998775 55555 99999999999999999999999999998888
Q ss_pred ecc
Q 029300 91 FAK 93 (195)
Q Consensus 91 ~a~ 93 (195)
+-.
T Consensus 83 ~r~ 85 (267)
T KOG4454|consen 83 LRC 85 (267)
T ss_pred ccc
Confidence 753
No 76
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=1.2e-10 Score=95.33 Aligned_cols=76 Identities=30% Similarity=0.494 Sum_probs=70.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecccC
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 95 (195)
..|||| +.+|+..|.++|.++|+|..|.|+.+. | +.|||||.|.++++|+.||..||...|.|++|.|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 899999999999999999999999997 5 8899999999999999999999999999999999998755
Q ss_pred CC
Q 029300 96 PN 97 (195)
Q Consensus 96 ~~ 97 (195)
+.
T Consensus 76 ~~ 77 (369)
T KOG0123|consen 76 PS 77 (369)
T ss_pred Cc
Confidence 43
No 77
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.14 E-value=2.4e-10 Score=94.05 Aligned_cols=84 Identities=23% Similarity=0.374 Sum_probs=69.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
....+|||.|||.+++..+|+++|..||.|+...|......++..+||||+|.+.++++.||++ +-..|+++.|.|+..
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 3345699999999999999999999999998876655332344449999999999999999995 688899999999988
Q ss_pred ccCCC
Q 029300 93 KYGPN 97 (195)
Q Consensus 93 ~~~~~ 97 (195)
++...
T Consensus 365 ~~~~~ 369 (419)
T KOG0116|consen 365 RPGFR 369 (419)
T ss_pred ccccc
Confidence 76443
No 78
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.13 E-value=5.7e-10 Score=73.86 Aligned_cols=79 Identities=19% Similarity=0.366 Sum_probs=70.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhc--CCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceec----CcEEEE
Q 029300 16 YSLLVLNITFRTTADDLFPLFEK--YGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD----GREITV 89 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~--~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v 89 (195)
+||.|.|||...+.++|.+++.. .|....+.|+.+..++.+.|||||.|.+++.|....+.++|..|. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998864 467788899999889999999999999999999999999999885 466788
Q ss_pred Eeccc
Q 029300 90 QFAKY 94 (195)
Q Consensus 90 ~~a~~ 94 (195)
.||+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88864
No 79
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.13 E-value=2.4e-10 Score=89.94 Aligned_cols=87 Identities=24% Similarity=0.365 Sum_probs=76.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeE--------EEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceec
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVD--------VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD 83 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~--------v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 83 (195)
...++.|||.|||.++|.+++.++|++||.|.. |+|..+. .|+.+|=|+|.|...++++-|++.|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 344677999999999999999999999998753 6776665 5999999999999999999999999999999
Q ss_pred CcEEEEEecccCCCch
Q 029300 84 GREITVQFAKYGPNAE 99 (195)
Q Consensus 84 g~~l~v~~a~~~~~~~ 99 (195)
|+.|.|+.|+...+.+
T Consensus 210 g~~~rVerAkfq~Kge 225 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGE 225 (382)
T ss_pred CcEEEEehhhhhhccC
Confidence 9999999998654433
No 80
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.11 E-value=6e-11 Score=94.24 Aligned_cols=80 Identities=28% Similarity=0.515 Sum_probs=71.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
+.++|||++|+++++++.|.+.|.+||+|.+|.++.++.++..+||+||+|++.+...++|. .....|+|+.|.+.-|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67899999999999999999999999999999999999999999999999999998888877 35567788877776664
Q ss_pred c
Q 029300 94 Y 94 (195)
Q Consensus 94 ~ 94 (195)
+
T Consensus 84 ~ 84 (311)
T KOG4205|consen 84 S 84 (311)
T ss_pred C
Confidence 3
No 81
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=99.10 E-value=1.4e-10 Score=88.87 Aligned_cols=82 Identities=29% Similarity=0.480 Sum_probs=77.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
.+...|||+|+.+.++.++|+.+|+.||.|..|.|+.++..++++|||||+|.+.+.++.|+. |||..|.|..|.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 456789999999999999999999999999999999999899999999999999999999999 9999999999999998
Q ss_pred ccC
Q 029300 93 KYG 95 (195)
Q Consensus 93 ~~~ 95 (195)
...
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 754
No 82
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.05 E-value=2.7e-10 Score=90.59 Aligned_cols=82 Identities=30% Similarity=0.419 Sum_probs=75.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
..+|||++||..+++++|+++|.+||.|..+.++.+..+..++||+||.|.+++.+..++. ..-+.|+|+.+.|..|.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 4589999999999999999999999999999999999999999999999999999999988 588899999999998876
Q ss_pred CCC
Q 029300 95 GPN 97 (195)
Q Consensus 95 ~~~ 97 (195)
+..
T Consensus 176 k~~ 178 (311)
T KOG4205|consen 176 KEV 178 (311)
T ss_pred hhh
Confidence 543
No 83
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=99.00 E-value=1.5e-09 Score=92.44 Aligned_cols=84 Identities=25% Similarity=0.363 Sum_probs=73.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCC---CCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEE
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRT---GDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~---g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 89 (195)
..++.|||+||++.++++.|...|..||+|..|+|++.... .....|+||.|-+..+|++|++.|+|..+.+..|++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 44678999999999999999999999999999999876522 233578999999999999999999999999999999
Q ss_pred EecccCC
Q 029300 90 QFAKYGP 96 (195)
Q Consensus 90 ~~a~~~~ 96 (195)
.|+++-+
T Consensus 252 gWgk~V~ 258 (877)
T KOG0151|consen 252 GWGKAVP 258 (877)
T ss_pred ccccccc
Confidence 9997543
No 84
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.99 E-value=1.4e-09 Score=86.94 Aligned_cols=72 Identities=21% Similarity=0.269 Sum_probs=56.8
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCC---CCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEE
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRT---GDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~---g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 89 (195)
.|.|.||.+.++.++|+.||...|+|.++.|+.+... ....-.|||.|.+...+..|.+ |.++.|-+..|.|
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv 83 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIV 83 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEE
Confidence 7999999999999999999999999999988764322 2224679999999999888877 5555555544444
No 85
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.98 E-value=7.1e-10 Score=87.82 Aligned_cols=88 Identities=24% Similarity=0.336 Sum_probs=78.4
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCcee--------EEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCce
Q 029300 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVV--------DVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV 81 (195)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~--------~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~ 81 (195)
.......+|||-+||..+++++|.++|.++|.|. .|.|..++.|+.+++-|.|.|++...|++||..+++..
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 3455677999999999999999999999999874 36777888999999999999999999999999999999
Q ss_pred ecCcEEEEEecccCCC
Q 029300 82 VDGREITVQFAKYGPN 97 (195)
Q Consensus 82 ~~g~~l~v~~a~~~~~ 97 (195)
|.+.+|+|.+|...+.
T Consensus 141 f~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRTG 156 (351)
T ss_pred ccCCCchhhhhhhccC
Confidence 9999999999875543
No 86
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=4.8e-10 Score=93.14 Aligned_cols=71 Identities=25% Similarity=0.525 Sum_probs=64.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
.+..+|+|.|||..|++++|..+|+.||+|.+|..-.. ..|.+||+|.+..+|++|+++||+..|.|+.|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 44678999999999999999999999999999766433 448999999999999999999999999998887
No 87
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=6.2e-09 Score=78.29 Aligned_cols=71 Identities=35% Similarity=0.618 Sum_probs=63.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 89 (195)
+....+.|+|.||+..+.+++|..+|.++|++....+. .+++||+|...++|..||..|++..+.++.|.|
T Consensus 95 p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 95 PSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred cccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 34667899999999999999999999999999554442 268999999999999999999999999999999
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=3e-09 Score=88.90 Aligned_cols=85 Identities=25% Similarity=0.424 Sum_probs=78.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
....+.|||++||..+++.++.+++..||.+....++.+..+|.++||||.+|.+......|+..|||..+++.+|.|+.
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 34567899999999999999999999999999999999988899999999999999999999999999999999999998
Q ss_pred cccCC
Q 029300 92 AKYGP 96 (195)
Q Consensus 92 a~~~~ 96 (195)
|-...
T Consensus 366 A~~g~ 370 (500)
T KOG0120|consen 366 AIVGA 370 (500)
T ss_pred hhccc
Confidence 86543
No 89
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.85 E-value=1.5e-08 Score=81.59 Aligned_cols=75 Identities=32% Similarity=0.480 Sum_probs=68.7
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 15 TYSLLVLNITFR-TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 15 ~~~l~V~nLp~~-~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
+..|.|.||... +|.+.|..+|.-||.|..|+|..++. ..|+|+|.+...|+-|+++|+|..|.|++|.|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 678899999765 89999999999999999999998764 469999999999999999999999999999999987
Q ss_pred c
Q 029300 94 Y 94 (195)
Q Consensus 94 ~ 94 (195)
-
T Consensus 372 H 372 (492)
T KOG1190|consen 372 H 372 (492)
T ss_pred C
Confidence 4
No 90
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.83 E-value=4.1e-09 Score=79.94 Aligned_cols=82 Identities=23% Similarity=0.492 Sum_probs=76.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
...+.||.+.|..+++.+.|-..|.+|-.....+++.++-||+++||+||-|.+..++..|+..|||..++.++|++.-+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 45689999999999999999999999998888899999999999999999999999999999999999999999988765
Q ss_pred cc
Q 029300 93 KY 94 (195)
Q Consensus 93 ~~ 94 (195)
.+
T Consensus 268 ~w 269 (290)
T KOG0226|consen 268 EW 269 (290)
T ss_pred hH
Confidence 44
No 91
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.82 E-value=2.4e-08 Score=82.08 Aligned_cols=80 Identities=21% Similarity=0.381 Sum_probs=67.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
......|.+.+|||.+|+++|.+||+.+ .|..+.+.. .+|.+.|-|||+|.++++++.||+ .+-..+..+-|.|--
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEc
Confidence 4456789999999999999999999998 466666554 378899999999999999999999 588888888898887
Q ss_pred cccC
Q 029300 92 AKYG 95 (195)
Q Consensus 92 a~~~ 95 (195)
+...
T Consensus 83 ~~~~ 86 (510)
T KOG4211|consen 83 AGGA 86 (510)
T ss_pred cCCc
Confidence 7443
No 92
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.77 E-value=5.1e-08 Score=61.91 Aligned_cols=69 Identities=30% Similarity=0.454 Sum_probs=47.6
Q ss_pred cEEEEeCCCCCCCHHHH----HHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 16 YSLLVLNITFRTTADDL----FPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l----~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
..|+|.|||.+.+...| +.++..+| .|..|. + +.|+|.|.+++.|..|++.|+|..+.|..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~---~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------G---GTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------T---T-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------C---CEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 36999999999887664 56666776 666662 1 679999999999999999999999999999999
Q ss_pred eccc
Q 029300 91 FAKY 94 (195)
Q Consensus 91 ~a~~ 94 (195)
|.+.
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 9853
No 93
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=1.5e-07 Score=68.53 Aligned_cols=73 Identities=27% Similarity=0.418 Sum_probs=66.2
Q ss_pred CCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceec
Q 029300 4 FGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD 83 (195)
Q Consensus 4 ~~~~~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 83 (195)
++..+||.....+.|.|.+||+..+|++|++++.+.|.|+...+..+ |++.|+|...++++-||..|+...+.
T Consensus 104 gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 104 GGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred CcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 45566888888999999999999999999999999999999998877 78999999999999999999988774
No 94
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.72 E-value=3.6e-08 Score=66.62 Aligned_cols=73 Identities=26% Similarity=0.424 Sum_probs=45.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCc-----eecCcEEEE
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR-----VVDGREITV 89 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~-----~~~g~~l~v 89 (195)
++.|+|.+++..++.++|+++|..||.|..|.+.... ..|||.|.+.+.|+.|+.++... .|.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 3679999999999999999999999999999987643 46999999999999999876433 567777776
Q ss_pred Eecc
Q 029300 90 QFAK 93 (195)
Q Consensus 90 ~~a~ 93 (195)
.+-.
T Consensus 75 ~vLe 78 (105)
T PF08777_consen 75 EVLE 78 (105)
T ss_dssp E---
T ss_pred EECC
Confidence 6543
No 95
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.66 E-value=6.7e-08 Score=73.57 Aligned_cols=73 Identities=23% Similarity=0.447 Sum_probs=60.3
Q ss_pred HHHHHHhh-cCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecccCCCchhccc
Q 029300 30 DDLFPLFE-KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYGPNAEKIQQ 103 (195)
Q Consensus 30 ~~l~~~f~-~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~ 103 (195)
++|...|. +||+|+++.|..+- .-+..|-+||.|...++|++|++.||+.+|.|++|.+++.......+....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea~C~ 156 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFREAICG 156 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhhhhhc
Confidence 55666666 89999999887653 445678999999999999999999999999999999999987665555443
No 96
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.66 E-value=3.3e-08 Score=73.83 Aligned_cols=68 Identities=24% Similarity=0.371 Sum_probs=56.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCcee
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 82 (195)
....+.||||.||.++++|++|+.+|+.|....-++|... .| ...|||+|++.+.|..||..|+|..|
T Consensus 206 ~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 206 GARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred cchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhhccee
Confidence 3455779999999999999999999999987666666432 22 25899999999999999999999876
No 97
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.65 E-value=1.7e-07 Score=70.20 Aligned_cols=77 Identities=25% Similarity=0.372 Sum_probs=68.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceec-CcEEEEE
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD-GREITVQ 90 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~-g~~l~v~ 90 (195)
..++.+||+.|||..++.+.|..+|.+|....+|.++... .+.|||+|.+...|..|...|+|..|- ...|.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 4567899999999999999999999999999999887643 278999999999999999999999885 8888888
Q ss_pred ecc
Q 029300 91 FAK 93 (195)
Q Consensus 91 ~a~ 93 (195)
+++
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 875
No 98
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.58 E-value=4.5e-07 Score=72.54 Aligned_cols=82 Identities=26% Similarity=0.333 Sum_probs=71.6
Q ss_pred CCCCCCCcEEEEeCCCCC-CCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEE
Q 029300 9 PPDIRDTYSLLVLNITFR-TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~-~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 87 (195)
|....+++.+.|-+|... ++-+.|.++|..||.|..|++++.+. |.|.|++.+..+.+.|+..||+..+.|.+|
T Consensus 281 p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lfG~kl 355 (494)
T KOG1456|consen 281 PGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLFGGKL 355 (494)
T ss_pred CCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccccceE
Confidence 344566889999999876 67788999999999999999987643 789999999999999999999999999999
Q ss_pred EEEecccC
Q 029300 88 TVQFAKYG 95 (195)
Q Consensus 88 ~v~~a~~~ 95 (195)
.|.+++..
T Consensus 356 ~v~~SkQ~ 363 (494)
T KOG1456|consen 356 NVCVSKQN 363 (494)
T ss_pred EEeecccc
Confidence 99998743
No 99
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.56 E-value=1.9e-08 Score=83.62 Aligned_cols=84 Identities=29% Similarity=0.418 Sum_probs=76.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
.+...+||+..|+..++..+|.+||+.+|+|..|.|+.+..++..+|.|||+|.+.+....||. |.|..+.|.+|.|+.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 3556789999999999999999999999999999999999999999999999999999999996 999999999999998
Q ss_pred cccCC
Q 029300 92 AKYGP 96 (195)
Q Consensus 92 a~~~~ 96 (195)
.....
T Consensus 255 sEaek 259 (549)
T KOG0147|consen 255 SEAEK 259 (549)
T ss_pred cHHHH
Confidence 76543
No 100
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.54 E-value=3.1e-07 Score=75.69 Aligned_cols=79 Identities=24% Similarity=0.400 Sum_probs=65.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeE-EEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVD-VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~-v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
....+|-+.+||+.||++||.+||+..-.|.. |.|+.++ .+.+.|-|||+|++.+.|+.||.. |...|+.+-|.|.-
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeeh
Confidence 45678999999999999999999998755544 5555554 566889999999999999999994 77888888888876
Q ss_pred cc
Q 029300 92 AK 93 (195)
Q Consensus 92 a~ 93 (195)
+.
T Consensus 179 Ss 180 (510)
T KOG4211|consen 179 SS 180 (510)
T ss_pred hH
Confidence 53
No 101
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.52 E-value=8.8e-08 Score=75.88 Aligned_cols=75 Identities=24% Similarity=0.421 Sum_probs=67.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCC--ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYG--KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G--~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
..+||+||-|++|.+||.+.+...| .|.++++..+..+|+++|||+|...+....++.|+.|-..+|.|+.-.|.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 4699999999999999999998877 67889999999999999999999999999999999999999988765554
No 102
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.49 E-value=9.5e-07 Score=70.71 Aligned_cols=85 Identities=24% Similarity=0.359 Sum_probs=68.3
Q ss_pred CCCCCCCCCcEEEEeCCC--CCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCcee--
Q 029300 7 SGPPDIRDTYSLLVLNIT--FRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV-- 82 (195)
Q Consensus 7 ~~p~~~~~~~~l~V~nLp--~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~-- 82 (195)
.++.....+..|.++=|. +.+|.+-|..+....|+|..|.|+.. +| -.|.|+|++.+.|++|.+.|||..|
T Consensus 112 ~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYs 186 (494)
T KOG1456|consen 112 PGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYS 186 (494)
T ss_pred CCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccc
Confidence 445555556666665554 55899999999999999999988764 33 4699999999999999999999987
Q ss_pred cCcEEEEEecccCC
Q 029300 83 DGREITVQFAKYGP 96 (195)
Q Consensus 83 ~g~~l~v~~a~~~~ 96 (195)
+-..|+|+||++..
T Consensus 187 GCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 187 GCCTLKIEYAKPTR 200 (494)
T ss_pred cceeEEEEecCcce
Confidence 45789999998754
No 103
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.48 E-value=4.3e-07 Score=71.75 Aligned_cols=80 Identities=18% Similarity=0.517 Sum_probs=63.2
Q ss_pred CCcEEEEeCCCCCCCHHH----H--HHHhhcCCceeEEEeccCCCC-CCcccE--EEEEEccHHHHHHHHHhhCCceecC
Q 029300 14 DTYSLLVLNITFRTTADD----L--FPLFEKYGKVVDVFIPRDRRT-GDSRGF--AFVRYKYADEAQKAVDRLDGRVVDG 84 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~----l--~~~f~~~G~i~~v~~~~~~~~-g~~~g~--afV~f~~~~~a~~a~~~l~g~~~~g 84 (195)
.-.-|||-+||+.+..++ | .++|.+||.|..|.|...... ....+. .||+|...++|..||.+.+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345689999999877666 3 478999999999988654211 111122 4999999999999999999999999
Q ss_pred cEEEEEecc
Q 029300 85 REITVQFAK 93 (195)
Q Consensus 85 ~~l~v~~a~ 93 (195)
+.|++.|..
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 999999865
No 104
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.40 E-value=3.3e-07 Score=72.62 Aligned_cols=83 Identities=28% Similarity=0.532 Sum_probs=75.3
Q ss_pred CcEEE-EeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 15 TYSLL-VLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 15 ~~~l~-V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
..++| |+||+..++.++|+.+|..+|.|..+.+...+.++..+|||||.|.+...+..|+.. +...+.+.++.|....
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 34555 999999999999999999999999999999999999999999999999999999987 8889999999999987
Q ss_pred cCCCc
Q 029300 94 YGPNA 98 (195)
Q Consensus 94 ~~~~~ 98 (195)
+.+..
T Consensus 263 ~~~~~ 267 (285)
T KOG4210|consen 263 PRPKS 267 (285)
T ss_pred CCccc
Confidence 76544
No 105
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.39 E-value=2.4e-06 Score=67.77 Aligned_cols=81 Identities=26% Similarity=0.477 Sum_probs=64.7
Q ss_pred CCCCCCCcEEEEeCCCC----CCC-------HHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhh
Q 029300 9 PPDIRDTYSLLVLNITF----RTT-------ADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~----~~~-------~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l 77 (195)
+......++|.|.||=. ..+ .++|.+-..+||.|..|.|.-. ++.|.+.|.|.+.++|..||+.|
T Consensus 259 ~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m 334 (382)
T KOG1548|consen 259 PSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTM 334 (382)
T ss_pred cccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHh
Confidence 33456678999999732 222 3456677889999999988643 45599999999999999999999
Q ss_pred CCceecCcEEEEEecc
Q 029300 78 DGRVVDGREITVQFAK 93 (195)
Q Consensus 78 ~g~~~~g~~l~v~~a~ 93 (195)
+|..|+|++|...+-.
T Consensus 335 ~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 335 DGRWFDGRQLTASIWD 350 (382)
T ss_pred cCeeecceEEEEEEeC
Confidence 9999999999988754
No 106
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.38 E-value=2.4e-07 Score=70.56 Aligned_cols=73 Identities=18% Similarity=0.311 Sum_probs=61.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCC--------CCcc----cEEEEEEccHHHHHHHHHhhCCce
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRT--------GDSR----GFAFVRYKYADEAQKAVDRLDGRV 81 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~--------g~~~----g~afV~f~~~~~a~~a~~~l~g~~ 81 (195)
..-+|||++||+.+...-|.++|..||.|-.|.|.....+ |.+. --|+|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999988765433 2222 237899999999999999999999
Q ss_pred ecCcE
Q 029300 82 VDGRE 86 (195)
Q Consensus 82 ~~g~~ 86 (195)
|+|..
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98864
No 107
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.36 E-value=4.3e-07 Score=76.44 Aligned_cols=81 Identities=17% Similarity=0.292 Sum_probs=66.6
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhh-cCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCcee---
Q 029300 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFE-KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV--- 82 (195)
Q Consensus 7 ~~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~-~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~--- 82 (195)
+.|+....++.|||.||---+|..+|+.++. .+|.|..++|-. .+..|||.|.+.++|.+...+|||..|
T Consensus 436 pSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~s 509 (718)
T KOG2416|consen 436 PSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPS 509 (718)
T ss_pred CCCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCC
Confidence 4455667789999999999999999999998 456666663322 336799999999999999999999988
Q ss_pred cCcEEEEEecc
Q 029300 83 DGREITVQFAK 93 (195)
Q Consensus 83 ~g~~l~v~~a~ 93 (195)
+++.|.|.|+.
T Consensus 510 NPK~L~adf~~ 520 (718)
T KOG2416|consen 510 NPKHLIADFVR 520 (718)
T ss_pred CCceeEeeecc
Confidence 56788888875
No 108
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.36 E-value=1.2e-06 Score=75.18 Aligned_cols=75 Identities=25% Similarity=0.433 Sum_probs=65.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCce-eEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKV-VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i-~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
+.|-+.|+|+.++.+||.+||..|-.+ ..|.+..+ ..|.++|-|.|.|++.++|..|...|++..|..++|.|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 378899999999999999999999755 34555544 4789999999999999999999999999999999998865
No 109
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.34 E-value=4.5e-06 Score=55.68 Aligned_cols=78 Identities=14% Similarity=0.283 Sum_probs=53.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCC-------CCCCcccEEEEEEccHHHHHHHHHhhCCceecCcE
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDR-------RTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~-------~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 86 (195)
..+.|.|-++|+. ....|..+|++||.|.+..-.... .......+..|+|.+..+|++||. .||..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3567999999988 567788999999999877511100 001123689999999999999999 5999998864
Q ss_pred -EEEEecc
Q 029300 87 -ITVQFAK 93 (195)
Q Consensus 87 -l~v~~a~ 93 (195)
+.|.+++
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 5577764
No 110
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=2.2e-06 Score=71.90 Aligned_cols=80 Identities=29% Similarity=0.470 Sum_probs=64.5
Q ss_pred CCCcEEEEeCCCCCCCH------HHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCcee-cCc
Q 029300 13 RDTYSLLVLNITFRTTA------DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV-DGR 85 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~------~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~-~g~ 85 (195)
.....|+|.|+|.--.. .-|..+|+++|+|..+.++.+..+| .+||+|++|.+..+|+.|++.|||..| .++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 34568999999864222 3467889999999999999887555 889999999999999999999999988 466
Q ss_pred EEEEEecc
Q 029300 86 EITVQFAK 93 (195)
Q Consensus 86 ~l~v~~a~ 93 (195)
.+.|..-+
T Consensus 135 tf~v~~f~ 142 (698)
T KOG2314|consen 135 TFFVRLFK 142 (698)
T ss_pred eEEeehhh
Confidence 77776543
No 111
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.27 E-value=3e-06 Score=49.92 Aligned_cols=52 Identities=21% Similarity=0.542 Sum_probs=42.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHH
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAV 74 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~ 74 (195)
+.|-|.|+++...+. |..+|..||+|..+.+.... .++||.|.+..+|+.||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 578899999876654 55588899999999886322 58999999999999985
No 112
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.22 E-value=4.9e-06 Score=69.99 Aligned_cols=63 Identities=27% Similarity=0.455 Sum_probs=52.5
Q ss_pred HHHHHhhcCCceeEEEeccCCC---CCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 31 DLFPLFEKYGKVVDVFIPRDRR---TGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 31 ~l~~~f~~~G~i~~v~~~~~~~---~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
+|+..+.+||.|..|.++.... .....|..||+|.+.++|+.|+++|+|..|.|+.|.+.|..
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 4566678899999999877622 23346789999999999999999999999999999988864
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=5.6e-06 Score=68.87 Aligned_cols=68 Identities=22% Similarity=0.244 Sum_probs=61.6
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhh-cCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHh
Q 029300 9 PPDIRDTYSLLVLNITFRTTADDLFPLFE-KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~~~~~~l~~~f~-~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 76 (195)
.....+..|||||+||--++.++|..+|. -||.|..+.|-.++.-+.++|-|=|+|.+..+-.+||.+
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 34456678999999999999999999998 799999999999988899999999999999999999874
No 114
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.13 E-value=7e-06 Score=66.53 Aligned_cols=78 Identities=24% Similarity=0.305 Sum_probs=63.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCc-EEEEEe
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR-EITVQF 91 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~-~l~v~~ 91 (195)
.++.+|++.|||..++|++|+++|..-|.......... +...+|++++++.|+|..|+..+++..+++. .|.|.|
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~----kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ----KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC----CCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 44668999999999999999999998886654433322 2336899999999999999999999998655 899999
Q ss_pred ccc
Q 029300 92 AKY 94 (195)
Q Consensus 92 a~~ 94 (195)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 874
No 115
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.11 E-value=3.4e-06 Score=68.63 Aligned_cols=68 Identities=19% Similarity=0.330 Sum_probs=56.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccC---CCC--CC--------cccEEEEEEccHHHHHHHHHhhCC
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRD---RRT--GD--------SRGFAFVRYKYADEAQKAVDRLDG 79 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~---~~~--g~--------~~g~afV~f~~~~~a~~a~~~l~g 79 (195)
.+..+|.+.|||.+-..+.|.++|..+|.|..|.|+.. +.+ +. .+-+|||+|+..+.|.+|.+.||.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 35789999999999999999999999999999999765 222 11 256799999999999999998765
Q ss_pred c
Q 029300 80 R 80 (195)
Q Consensus 80 ~ 80 (195)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 5
No 116
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.07 E-value=5.7e-06 Score=66.57 Aligned_cols=78 Identities=17% Similarity=0.330 Sum_probs=66.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCc-eeE--EEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGK-VVD--VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~-i~~--v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
...|-+.+||+.++.++|..||..|.. |.. |.|+.+. .|.+.|-|||+|.+.+.|.+|+...++..+..+.|.|--
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 457999999999999999999998863 433 6777764 688899999999999999999999888888888888876
Q ss_pred cc
Q 029300 92 AK 93 (195)
Q Consensus 92 a~ 93 (195)
+.
T Consensus 359 ~S 360 (508)
T KOG1365|consen 359 CS 360 (508)
T ss_pred cc
Confidence 64
No 117
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=98.05 E-value=4e-05 Score=54.24 Aligned_cols=57 Identities=30% Similarity=0.477 Sum_probs=45.9
Q ss_pred HHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecccCC
Q 029300 31 DLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYGP 96 (195)
Q Consensus 31 ~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 96 (195)
+|.+.|..||+|.-|.+..+ ..+|+|.+-+.|.+|+. |+|..++|+.|+|.+..+..
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccH
Confidence 67788889999988888654 48999999999999999 89999999999999876543
No 118
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.98 E-value=1.3e-06 Score=70.24 Aligned_cols=76 Identities=12% Similarity=0.059 Sum_probs=60.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecccC
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 95 (195)
.+|+|++|+..+...++.++|..+|+|....+... ...-+|.|+|........|+. ++|..+.-+...+.+.++.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKPH 226 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCcc
Confidence 57999999999999999999999999988777543 334678899999999999998 6888887555555554443
Q ss_pred C
Q 029300 96 P 96 (195)
Q Consensus 96 ~ 96 (195)
.
T Consensus 227 k 227 (479)
T KOG4676|consen 227 K 227 (479)
T ss_pred c
Confidence 3
No 119
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.96 E-value=2.5e-05 Score=60.84 Aligned_cols=66 Identities=32% Similarity=0.394 Sum_probs=53.1
Q ss_pred HHHHHHHhhcCCceeEEEeccCCCCCCc-ccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 29 ADDLFPLFEKYGKVVDVFIPRDRRTGDS-RGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 29 ~~~l~~~f~~~G~i~~v~~~~~~~~g~~-~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
+.++++.+.+||+|..|.|...+..-.. .--.||+|+..+.|.+|+-.|||..|+|+.+..+|...
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 3567888999999999888766422111 23479999999999999999999999999999888653
No 120
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.88 E-value=1.7e-05 Score=69.90 Aligned_cols=78 Identities=19% Similarity=0.297 Sum_probs=68.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecC--cEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG--REIT 88 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~l~ 88 (195)
....++.|||++|..++....|..+|..||.|..|.+-... -||+|+|++...|++|++.|-|..|++ +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 44557789999999999999999999999999998875432 699999999999999999999999976 5688
Q ss_pred EEeccc
Q 029300 89 VQFAKY 94 (195)
Q Consensus 89 v~~a~~ 94 (195)
|.|+..
T Consensus 525 vdla~~ 530 (975)
T KOG0112|consen 525 VDLASP 530 (975)
T ss_pred cccccC
Confidence 988864
No 121
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.80 E-value=0.00011 Score=46.86 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=43.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCC
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g 79 (195)
.-.+..+|+ +|..+...||.++|..||.| .|.++.+ .-|||...+.+.|..|+..+.-
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 345667777 99999999999999999997 4555444 4699999999999999987763
No 122
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00012 Score=61.23 Aligned_cols=63 Identities=16% Similarity=0.316 Sum_probs=47.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCC---CCCCccc---EEEEEEccHHHHHHHHHhh
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDR---RTGDSRG---FAFVRYKYADEAQKAVDRL 77 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~---~~g~~~g---~afV~f~~~~~a~~a~~~l 77 (195)
-..+|||++||++++|++|...|..||.+ .|.++... .--.++| |+|+.|+++..++..|.++
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 35789999999999999999999999986 34444211 1123456 9999999998887766643
No 123
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.68 E-value=4.2e-05 Score=65.94 Aligned_cols=81 Identities=20% Similarity=0.039 Sum_probs=67.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeE-EEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVD-VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~-v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 89 (195)
+...+..|||..||..+++.++.++|...-.|++ |.|..-+ ++...+.|||+|..++++..|+..-+.+.++.+.|.|
T Consensus 430 P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 430 PGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred CCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 3456789999999999999999999998777766 6666554 6778899999999999988888866777778888888
Q ss_pred Eec
Q 029300 90 QFA 92 (195)
Q Consensus 90 ~~a 92 (195)
.-.
T Consensus 509 ~si 511 (944)
T KOG4307|consen 509 DSI 511 (944)
T ss_pred ech
Confidence 754
No 124
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.59 E-value=0.00031 Score=56.83 Aligned_cols=71 Identities=23% Similarity=0.286 Sum_probs=52.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCC----ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYG----KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G----~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
-.|-+.+||+++++.+|.+||.+.. .++.|.++.. .+|...|-|||.|..+++|+.||.+ |...|+.+.|.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIE 236 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIE 236 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHH
Confidence 4677889999999999999996432 3344544443 3788889999999999999999984 54455444443
No 125
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.58 E-value=0.00047 Score=41.66 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=44.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcC---CceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhh
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKY---GKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~---G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l 77 (195)
..|+|.||. +++.++|+.+|..| .....|.++.+ .-|-|.|.+.+.|..||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD-------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD-------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC-------CcEEEEECCHHHHHHHHHcC
Confidence 479999986 57889999999988 23467888776 35899999999999999865
No 126
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.56 E-value=4e-05 Score=67.32 Aligned_cols=79 Identities=24% Similarity=0.273 Sum_probs=71.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
...|||.|+|+..|.++|+.+|.++|.++.+.++..+ .|+++|.|||.|.+..+|..++..++...+....+.|+...+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 3579999999999999999999999999999887775 789999999999999999999998888888888888888665
No 127
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=97.45 E-value=0.00034 Score=51.73 Aligned_cols=83 Identities=14% Similarity=0.240 Sum_probs=52.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhc-CCce---eEEE--eccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecC--
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEK-YGKV---VDVF--IPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG-- 84 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~-~G~i---~~v~--~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g-- 84 (195)
.+..+|.|.+||+.+|++++.+.+.. ++.. ..+. +...........-|||.|.+.+++...+..++|..|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34679999999999999999987776 6654 3333 11111111223569999999999999999999988732
Q ss_pred ---cEEEEEecccC
Q 029300 85 ---REITVQFAKYG 95 (195)
Q Consensus 85 ---~~l~v~~a~~~ 95 (195)
....|++|...
T Consensus 85 g~~~~~~VE~Apyq 98 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQ 98 (176)
T ss_dssp S-EEEEEEEE-SS-
T ss_pred CCCcceeEEEcchh
Confidence 34577888653
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.45 E-value=3.9e-06 Score=73.45 Aligned_cols=71 Identities=25% Similarity=0.305 Sum_probs=60.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD 83 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 83 (195)
++.+++||.||++.+.+.+|...|..+|.|..+.+......+..+|+|||+|...+.|.+||....+..++
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 44578999999999999999999999998877776655668889999999999999999999965555544
No 129
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=97.43 E-value=5.4e-05 Score=60.16 Aligned_cols=80 Identities=19% Similarity=0.456 Sum_probs=61.8
Q ss_pred CcEEEEeCCCCCCCHHHHH---HHhhcCCceeEEEeccCCC--CCC-cccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 15 TYSLLVLNITFRTTADDLF---PLFEKYGKVVDVFIPRDRR--TGD-SRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~---~~f~~~G~i~~v~~~~~~~--~g~-~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
.+-+||.+|+..+..+++. +.|.+||.|..|.+..+.. .+. ...-++|+|...++|..||...+|+.++|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4568899999876555443 6789999999998877551 111 123389999999999999999999999999988
Q ss_pred EEeccc
Q 029300 89 VQFAKY 94 (195)
Q Consensus 89 v~~a~~ 94 (195)
+.+...
T Consensus 157 a~~gtt 162 (327)
T KOG2068|consen 157 ASLGTT 162 (327)
T ss_pred HhhCCC
Confidence 877654
No 130
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.41 E-value=4.1e-05 Score=67.59 Aligned_cols=81 Identities=23% Similarity=0.334 Sum_probs=66.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
+...+.+||++||+..+++.+|...|..+|.|..|.|...+ -+..-.||||.|.+...+-.|+..+.+..|..-.+.+.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 34557899999999999999999999999999999887653 33444789999999999999999899888755455554
Q ss_pred ec
Q 029300 91 FA 92 (195)
Q Consensus 91 ~a 92 (195)
+.
T Consensus 447 lG 448 (975)
T KOG0112|consen 447 LG 448 (975)
T ss_pred cc
Confidence 44
No 131
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.33 E-value=0.00021 Score=58.54 Aligned_cols=70 Identities=24% Similarity=0.369 Sum_probs=56.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcC--CceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCc-eecCcEEEEEec
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKY--GKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR-VVDGREITVQFA 92 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~--G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~-~~~g~~l~v~~a 92 (195)
..|||+||.+.++..+|..+|... +.-..+ |+. .||+||.+.+...|..|++.|+|. ++.|..+.|++.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f-l~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF-LVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce-eee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 369999999999999999999653 211222 222 289999999999999999999988 689999999876
Q ss_pred c
Q 029300 93 K 93 (195)
Q Consensus 93 ~ 93 (195)
-
T Consensus 74 v 74 (584)
T KOG2193|consen 74 V 74 (584)
T ss_pred h
Confidence 4
No 132
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.32 E-value=0.0013 Score=51.77 Aligned_cols=71 Identities=27% Similarity=0.441 Sum_probs=55.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcE-EEEEecc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE-ITVQFAK 93 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~-l~v~~a~ 93 (195)
+..|-|-++|+... ..|..+|.+||+|++..... +| .|.+|.|.+..+|++||. .||..|+|.. |-|.-+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~---ng---NwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS---NG---NWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC---CC---ceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 56788889987643 56788999999998876652 22 689999999999999999 5999998865 3455543
No 133
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=0.00036 Score=58.86 Aligned_cols=81 Identities=16% Similarity=0.293 Sum_probs=57.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHh-hcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceec----CcEEEEE
Q 029300 16 YSLLVLNITFRTTADDLFPLF-EKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD----GREITVQ 90 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f-~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v~ 90 (195)
+++.|.|+|...|...|.... ...|.-..+.++.+-.+..+.|||||.|.+.+++..+.+++||+.|. .+...|.
T Consensus 389 tt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~it 468 (549)
T KOG4660|consen 389 TTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASIT 468 (549)
T ss_pred hhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeee
Confidence 345555666555554444332 23566677788888788889999999999999999999999999763 3455677
Q ss_pred ecccCC
Q 029300 91 FAKYGP 96 (195)
Q Consensus 91 ~a~~~~ 96 (195)
||.-..
T Consensus 469 YArIQG 474 (549)
T KOG4660|consen 469 YARIQG 474 (549)
T ss_pred hhhhhc
Confidence 776433
No 134
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=97.28 E-value=0.0036 Score=42.53 Aligned_cols=68 Identities=13% Similarity=0.235 Sum_probs=47.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecC
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 84 (195)
+..+.+...|..++..+|..+...+- .|..+.|+.+. ..++-.++|.|.+.++|......+||..|..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 44444555555556666666656554 56778887753 2355578999999999999999999998743
No 135
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.13 E-value=0.0034 Score=44.20 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=53.6
Q ss_pred CCcEEEEeCCCCCCC----HHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEE
Q 029300 14 DTYSLLVLNITFRTT----ADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~----~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 89 (195)
+..||.|.=|..++. ...|...++.||+|..|.+... .-|.|.|.+...|-.|+.+++. ...|..+.+
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 345788876665543 3345566788999999988543 4699999999999999998876 566777887
Q ss_pred Eecc
Q 029300 90 QFAK 93 (195)
Q Consensus 90 ~~a~ 93 (195)
.|-.
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 7753
No 136
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.01 E-value=0.00041 Score=57.50 Aligned_cols=76 Identities=26% Similarity=0.378 Sum_probs=61.8
Q ss_pred CCcEEEEeCCCCCC-CHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 14 DTYSLLVLNITFRT-TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 14 ~~~~l~V~nLp~~~-~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
+.+.|-+.-+|+.+ +.++|...|.+||.|..|.+-... -.|.|+|.+..+|-.|.. .++..|+++.|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 34556666667664 568899999999999999886552 469999999999988877 6999999999999998
Q ss_pred ccCC
Q 029300 93 KYGP 96 (195)
Q Consensus 93 ~~~~ 96 (195)
++.+
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 8743
No 137
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.96 E-value=0.0011 Score=56.03 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=53.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhc--CCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCC--ceecCcEEE
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEK--YGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG--RVVDGREIT 88 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~--~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g--~~~~g~~l~ 88 (195)
..-|+|.|.-||..+-.++|+.||.. +-+++.|.+..+. -=||+|++..||+.|.+.|.. .+|.|++|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 34578899999999999999999964 7788899887663 369999999999999876532 245555543
No 138
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.90 E-value=0.0012 Score=50.81 Aligned_cols=75 Identities=23% Similarity=0.306 Sum_probs=59.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCc----eecCcEEEEEe
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR----VVDGREITVQF 91 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~----~~~g~~l~v~~ 91 (195)
..|+|.||...+..+.|...|..||+|....++.+. .++..+-++|.|.+.-.|.+|+..++-. +..+.+..|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 579999999999999999999999999776665553 6777889999999999999998876322 33445544443
No 139
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.87 E-value=0.0038 Score=46.43 Aligned_cols=63 Identities=24% Similarity=0.324 Sum_probs=46.4
Q ss_pred CHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhC--CceecCcEEEEEecccCC
Q 029300 28 TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD--GRVVDGREITVQFAKYGP 96 (195)
Q Consensus 28 ~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~--g~~~~g~~l~v~~a~~~~ 96 (195)
..+.|.++|..|+.+..+.+...- +-..|.|.+.+.|..|...|+ +..|.|..|+|.|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 457899999999988877666543 568999999999999999999 999999999999985443
No 140
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=96.81 E-value=0.026 Score=42.33 Aligned_cols=63 Identities=22% Similarity=0.191 Sum_probs=38.5
Q ss_pred EeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHH--hhCCcee
Q 029300 20 VLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD--RLDGRVV 82 (195)
Q Consensus 20 V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~--~l~g~~~ 82 (195)
|++-..--+.--|.+-+...|.|.--.-....+.....-.-|-.=.+.++|++||. .|+|.+|
T Consensus 21 LTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 21 LTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred eeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecccee
Confidence 33333344556677777777776433222222232233456777788999999986 5789887
No 141
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.60 E-value=0.0016 Score=56.23 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=61.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
.....+|||+||...+..+-++.++..+|.|..+... -|+|+.|..+..+..|+..++...++|+.|.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---------hhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3456789999999999999999999999998776554 2899999999999999999999999888887765
No 142
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.56 E-value=0.018 Score=36.24 Aligned_cols=59 Identities=22% Similarity=0.312 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHhhcCC-----ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 25 FRTTADDLFPLFEKYG-----KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 25 ~~~~~~~l~~~f~~~G-----~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
..++..+|..+|...+ .|-.|.|.. .|+||+.... .|..++..|++..+.|+.|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4578889998887664 356777754 4799988764 788899999999999999999875
No 143
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.53 E-value=0.0092 Score=49.49 Aligned_cols=68 Identities=18% Similarity=0.365 Sum_probs=57.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecC
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 84 (195)
++.|+|-.+|..++..||..|+..+- .|..|.|+.+.. .++=.++|.|.+.++|....+.+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78899999999999999999998765 678898888532 233458899999999999999999998853
No 144
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.39 E-value=0.0027 Score=56.31 Aligned_cols=75 Identities=31% Similarity=0.391 Sum_probs=61.8
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCcee--cCcEEEEEecccC
Q 029300 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV--DGREITVQFAKYG 95 (195)
Q Consensus 18 l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a~~~ 95 (195)
..+.|.+-..+-..|..+|..||.|..+....+- ..|.|+|...+.|..|+++|+|.++ -|-+.+|.+|+..
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3444555667777899999999999999887664 5799999999999999999999965 7888999999875
Q ss_pred CCc
Q 029300 96 PNA 98 (195)
Q Consensus 96 ~~~ 98 (195)
+.-
T Consensus 375 ~~~ 377 (1007)
T KOG4574|consen 375 PMY 377 (1007)
T ss_pred ccc
Confidence 543
No 145
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.83 E-value=0.0063 Score=48.47 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=63.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
...++||+++...+.+.++..++..+|.+..+.+.........+++++|.|...+.+..|++......+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 56789999999999999899999999988777766655677889999999999999999999544345566555554443
No 146
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.70 E-value=0.00069 Score=55.54 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=64.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
...+.|.|+|+...|+.|..|+..||.|..|....- ..-....-|+|.+.+.+..||.+|||..|....++|.|-..
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt---~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT---DSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc---chHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 456889999999999999999999999988866431 11224456889999999999999999999999999998754
Q ss_pred C
Q 029300 95 G 95 (195)
Q Consensus 95 ~ 95 (195)
.
T Consensus 157 e 157 (584)
T KOG2193|consen 157 E 157 (584)
T ss_pred h
Confidence 3
No 147
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.50 E-value=0.11 Score=31.94 Aligned_cols=55 Identities=22% Similarity=0.333 Sum_probs=43.0
Q ss_pred CCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEE
Q 029300 26 RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (195)
Q Consensus 26 ~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 89 (195)
.++-++|+..|..|+- ..|. .++ +| -||.|.+..+|+.+....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~--~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIR--DDR-TG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEE--ecC-CE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4788999999999964 2332 332 32 589999999999999999999988877765
No 148
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=0.074 Score=43.70 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=47.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCce-eEEEeccCCCCCCcccEEEEEEccHHHHHHHHHh
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKV-VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i-~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 76 (195)
.-.+.|-|.++|.....+||...|+.|+.- ..|.|+.+ -.||..|.+...|..||-.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 345789999999999999999999999753 56667665 4799999999999999883
No 149
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=0.15 Score=43.92 Aligned_cols=82 Identities=24% Similarity=0.408 Sum_probs=60.9
Q ss_pred CCCCcEEEEeCCCCC-CCHHHHHHHhhcC----CceeEEEeccCC----------CCCC---------------------
Q 029300 12 IRDTYSLLVLNITFR-TTADDLFPLFEKY----GKVVDVFIPRDR----------RTGD--------------------- 55 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~-~~~~~l~~~f~~~----G~i~~v~~~~~~----------~~g~--------------------- 55 (195)
...++.|-|.||.|. +...+|..+|..| |.|..|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 455778999999987 8889999988765 578888765221 1121
Q ss_pred ----------------cccEEEEEEccHHHHHHHHHhhCCceecC--cEEEEEecc
Q 029300 56 ----------------SRGFAFVRYKYADEAQKAVDRLDGRVVDG--REITVQFAK 93 (195)
Q Consensus 56 ----------------~~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a~ 93 (195)
..=||.|+|.+.+.|.+....++|..|.. ..|-+.|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 12368999999999999999999999964 455555543
No 150
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=93.60 E-value=0.29 Score=38.61 Aligned_cols=47 Identities=13% Similarity=0.132 Sum_probs=36.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCce-eEEEeccCCCCCCcccEEEEEEccH
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKV-VDVFIPRDRRTGDSRGFAFVRYKYA 67 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i-~~v~~~~~~~~g~~~g~afV~f~~~ 67 (195)
.+-|+|+||+.++.-.||+..+.+.+.+ ..|.+.. +.|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCc
Confidence 4569999999999999999999887744 4555533 337799999764
No 151
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=92.59 E-value=0.097 Score=38.45 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=54.6
Q ss_pred cEEEEeCCCCCCCHH-----HHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCc-EEEE
Q 029300 16 YSLLVLNITFRTTAD-----DLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR-EITV 89 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~-----~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~-~l~v 89 (195)
+++++++|+..+..+ ....+|.+|.+.....++.. .+..-|.|.+.+.|..|...+++..|.|. .+++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 468888888765332 34566776766555555443 26778999999999999999999999888 8888
Q ss_pred EecccC
Q 029300 90 QFAKYG 95 (195)
Q Consensus 90 ~~a~~~ 95 (195)
-++.+.
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 887653
No 152
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=90.52 E-value=0.45 Score=29.29 Aligned_cols=60 Identities=17% Similarity=0.208 Sum_probs=44.4
Q ss_pred HHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 30 DDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 30 ~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
.+|.+.|..+| ++..|..+....++.+...-||+.....+... .|+=..|+|+.|.|+-.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 46788888888 78888888887777777888888876544333 35556778888888754
No 153
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=90.35 E-value=0.038 Score=47.09 Aligned_cols=75 Identities=16% Similarity=0.137 Sum_probs=55.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEE
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 87 (195)
..+++|||.|++++++..+|..++..+-.+..+.+-..........+++|+|.---....|+.+||+..+....+
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 346789999999999999999999988776666654433233345678999987777777777788877654443
No 154
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=89.38 E-value=1 Score=27.77 Aligned_cols=61 Identities=13% Similarity=0.218 Sum_probs=44.7
Q ss_pred HHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 30 DDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 30 ~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
++|.+.|...| +|..|.-+....++.+....||+++...+... .|+=..|++..|+|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCC
Confidence 46777787777 77888777776677777888888886655333 355567888889888764
No 155
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=87.96 E-value=0.7 Score=37.91 Aligned_cols=68 Identities=15% Similarity=0.316 Sum_probs=49.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCC-ceeEEEeccCCCC--CCcccEEEEEEccHHHHHHHHHhhCCcee
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRT--GDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G-~i~~v~~~~~~~~--g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 82 (195)
-..|.|.+||+.+++++|.+.+..+- .|....+...... .+..+.|||.|.+.++.......++|..|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 35688999999999999998887764 2333333321111 12246789999999999999888999876
No 156
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=87.86 E-value=1.7 Score=34.59 Aligned_cols=83 Identities=16% Similarity=0.272 Sum_probs=58.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCC-------CCCCcccEEEEEEccHHHHHHHHH----hhCC
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDR-------RTGDSRGFAFVRYKYADEAQKAVD----RLDG 79 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~-------~~g~~~g~afV~f~~~~~a~~a~~----~l~g 79 (195)
+.-.+..|.+.||...++-..+...|-+||+|+.|.++.+. ...+......+-|-+.+.|..... .|+.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 34446678899999999999999999999999999998764 112234668899999888776543 2222
Q ss_pred c--eecCcEEEEEecc
Q 029300 80 R--VVDGREITVQFAK 93 (195)
Q Consensus 80 ~--~~~g~~l~v~~a~ 93 (195)
. .+.-..|.|.|..
T Consensus 91 fK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHhcCCcceeEEEEE
Confidence 2 4555666666553
No 157
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=87.85 E-value=1.4 Score=30.18 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=29.2
Q ss_pred EEEEeCCCCC---------CCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEcc-HHHHHHHHH
Q 029300 17 SLLVLNITFR---------TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY-ADEAQKAVD 75 (195)
Q Consensus 17 ~l~V~nLp~~---------~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~-~~~a~~a~~ 75 (195)
++.|.|++.. ++.+.|.+.|..|..+. +..+.++ ....|+++|+|.. ..-...|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 5778888653 35678999999998875 4444443 2456999999984 344444443
No 158
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=86.58 E-value=7.2 Score=27.22 Aligned_cols=73 Identities=12% Similarity=0.188 Sum_probs=52.6
Q ss_pred CCCcEEEEeCCCCC---CCHHHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 13 RDTYSLLVLNITFR---TTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 13 ~~~~~l~V~nLp~~---~~~~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
.+...|.|.+.... .+...|.+.+..-| .++.+.... +...|.|.+.++..+|.+.|....-++..|.
T Consensus 33 gedpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~--------~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VA 104 (127)
T PRK10629 33 QQESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEN--------DSLLIRFDSPEQSAAAKEVLDRTLPHGYIIA 104 (127)
T ss_pred CCCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeC--------CEEEEEECCHHHHHHHHHHHHHHcCCCCEEE
Confidence 44567888877444 56677888888777 556665533 3589999999999999888776665666777
Q ss_pred EEecc
Q 029300 89 VQFAK 93 (195)
Q Consensus 89 v~~a~ 93 (195)
+.++.
T Consensus 105 lnl~p 109 (127)
T PRK10629 105 QQDDN 109 (127)
T ss_pred EecCC
Confidence 77765
No 159
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=85.56 E-value=1.3 Score=33.81 Aligned_cols=65 Identities=22% Similarity=0.378 Sum_probs=46.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHh
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 76 (195)
......+++.+++..++..++..+|..+|.+..+.+...........+.++.+.....+..++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSR 286 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhcc
Confidence 34467899999999999999999999999997777766554443444444555555555554443
No 160
>PRK11901 hypothetical protein; Reviewed
Probab=83.23 E-value=3.7 Score=33.26 Aligned_cols=63 Identities=21% Similarity=0.362 Sum_probs=40.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEE--EEccHHHHHHHHHhhCCc
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFV--RYKYADEAQKAVDRLDGR 80 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV--~f~~~~~a~~a~~~l~g~ 80 (195)
...++|.|..+. .++.|..|..+++ +..+.+......|+. .|.+| .|.+.++|..|+..|-..
T Consensus 243 ~~~YTLQL~Aas---~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 243 ASHYTLQLSSAS---RSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCCeEEEeecCC---CHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHH
Confidence 345677776653 5777888887775 334444433323333 55544 689999999999987643
No 161
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=83.20 E-value=4.9 Score=33.59 Aligned_cols=85 Identities=24% Similarity=0.408 Sum_probs=57.8
Q ss_pred CCCCCCCcEEEEeCCCCC-CCHHHHHHHhhcC----CceeEEEeccCC--------------------------------
Q 029300 9 PPDIRDTYSLLVLNITFR-TTADDLFPLFEKY----GKVVDVFIPRDR-------------------------------- 51 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~-~~~~~l~~~f~~~----G~i~~v~~~~~~-------------------------------- 51 (195)
|....++..|-|-||.|. +...+|..+|+.| |.|..|.|....
T Consensus 140 pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~ 219 (622)
T COG5638 140 PEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFG 219 (622)
T ss_pred cCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccC
Confidence 334556778999999987 7888998888755 466666653110
Q ss_pred --------CCCC------c-------------------ccEEEEEEccHHHHHHHHHhhCCceecC--cEEEEEecc
Q 029300 52 --------RTGD------S-------------------RGFAFVRYKYADEAQKAVDRLDGRVVDG--REITVQFAK 93 (195)
Q Consensus 52 --------~~g~------~-------------------~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a~ 93 (195)
..|. - .-||.|++.+.+.+......++|..+.. ..+-+.|..
T Consensus 220 ~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvP 296 (622)
T COG5638 220 DDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVP 296 (622)
T ss_pred CccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecC
Confidence 0000 0 1368899999999999999999998754 445555543
No 162
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=80.24 E-value=6.7 Score=24.79 Aligned_cols=56 Identities=23% Similarity=0.232 Sum_probs=38.9
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-CC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHh
Q 029300 18 LLVLNITFRTTADDLFPLFEK-YG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (195)
Q Consensus 18 l~V~nLp~~~~~~~l~~~f~~-~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 76 (195)
-|+-.++..++..+|+..++. || .|..|....-+. ..--|||.+..-+.|......
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 556667889999999988876 56 566665544331 123499999888777776554
No 163
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=79.61 E-value=34 Score=30.71 Aligned_cols=62 Identities=3% Similarity=0.047 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHhhcCCce-----eEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecccC
Q 029300 25 FRTTADDLFPLFEKYGKV-----VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (195)
Q Consensus 25 ~~~~~~~l~~~f~~~G~i-----~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 95 (195)
..++..+|..++..-+.| -.|.|.. .|.||+... ..|...+..|++..+.|+.|.|+.+...
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGDA 563 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcCh-hhHHHHHHHhccccccCCceEEEECCCC
Confidence 457888888888765544 3455543 478998875 4578888999999999999999988533
No 164
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=79.29 E-value=3.2 Score=32.02 Aligned_cols=35 Identities=17% Similarity=0.394 Sum_probs=29.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEE
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVF 46 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~ 46 (195)
..+..+||+-|||..++++.|..+..++|-+..+.
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 34556799999999999999999999998665443
No 165
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=79.21 E-value=6.9 Score=25.18 Aligned_cols=56 Identities=21% Similarity=0.216 Sum_probs=39.0
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-CC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHh
Q 029300 18 LLVLNITFRTTADDLFPLFEK-YG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (195)
Q Consensus 18 l~V~nLp~~~~~~~l~~~f~~-~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 76 (195)
.|+--++..++..+|+..++. || .|..|....-+ . ..--|||.+.....|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~--~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-K--GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CcEEEEEEeCCCCcHHHHHHh
Confidence 445556788999999988876 66 56666554433 1 123499999988888877554
No 166
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.93 E-value=0.33 Score=40.54 Aligned_cols=78 Identities=5% Similarity=-0.174 Sum_probs=58.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
...|+..||..+++.+|.-+|.-||.|..+.+...-..+.....+||.... .+|..+|..+--..+.|..+.|.+++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 346778899999999999999999999888776554555666677776654 456667766666677788888888753
No 167
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=76.98 E-value=3.5 Score=36.80 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=5.5
Q ss_pred EEEEEccHHHH
Q 029300 60 AFVRYKYADEA 70 (195)
Q Consensus 60 afV~f~~~~~a 70 (195)
+||.|.+...+
T Consensus 695 ~~~k~~de~~~ 705 (877)
T KOG0151|consen 695 NPVKYDDEDRD 705 (877)
T ss_pred cccccchhhhH
Confidence 55666444433
No 168
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=76.47 E-value=1.4 Score=36.48 Aligned_cols=59 Identities=24% Similarity=0.242 Sum_probs=45.3
Q ss_pred EEEEeCCCCCCC--------HHHHHHHhhc--CCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHH
Q 029300 17 SLLVLNITFRTT--------ADDLFPLFEK--YGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (195)
Q Consensus 17 ~l~V~nLp~~~~--------~~~l~~~f~~--~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~ 75 (195)
.+|+.++..... .++|..+|.. ++.+..|.+..+.......|..|++|...+.|++++.
T Consensus 176 ~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 176 DVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 455666655433 3489999988 6778888887776667778899999999999999874
No 169
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=75.72 E-value=14 Score=21.67 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=40.2
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccH----HHHHHHHHh
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYA----DEAQKAVDR 76 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~----~~a~~a~~~ 76 (195)
||.|.||.=..-...|.+.+...-.|..+.+-... +.+-|.|... ++...+|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHH
Confidence 57888888777788899999998888888776543 5688888743 555666654
No 170
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=73.28 E-value=1.5 Score=34.61 Aligned_cols=67 Identities=27% Similarity=0.464 Sum_probs=42.1
Q ss_pred cEEEEeCCCCC------------CCHHHHHHHhhcCCceeEEEecc-CC----CCCCc-----ccEE---------EEEE
Q 029300 16 YSLLVLNITFR------------TTADDLFPLFEKYGKVVDVFIPR-DR----RTGDS-----RGFA---------FVRY 64 (195)
Q Consensus 16 ~~l~V~nLp~~------------~~~~~l~~~f~~~G~i~~v~~~~-~~----~~g~~-----~g~a---------fV~f 64 (195)
-|||+.+||-. .++.-|...|..||.|..|.|+. ++ .+|+. .||+ ||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 46888888743 24566899999999998887653 22 12332 2333 3555
Q ss_pred ccHHHHHHHHHhhCCcee
Q 029300 65 KYADEAQKAVDRLDGRVV 82 (195)
Q Consensus 65 ~~~~~a~~a~~~l~g~~~ 82 (195)
........||..|.|..|
T Consensus 230 meykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHhHHHHHHHHhcchH
Confidence 555555667776766644
No 171
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=72.06 E-value=11 Score=22.69 Aligned_cols=19 Identities=11% Similarity=0.522 Sum_probs=15.7
Q ss_pred HHHHHHhhcCCceeEEEec
Q 029300 30 DDLFPLFEKYGKVVDVFIP 48 (195)
Q Consensus 30 ~~l~~~f~~~G~i~~v~~~ 48 (195)
++|.++|+..|+|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999776653
No 172
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=69.68 E-value=1 Score=34.38 Aligned_cols=66 Identities=30% Similarity=0.447 Sum_probs=51.0
Q ss_pred cEEEEeC----CCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCcee
Q 029300 16 YSLLVLN----ITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (195)
Q Consensus 16 ~~l~V~n----Lp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 82 (195)
.+++.|+ |...++++.+...|..-|.+..+.+..+. +|.+..++||.+.-....-.|+....+..+
T Consensus 81 ~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 81 RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred cccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 4566666 77778888899999999999888887764 477888999999887777777776665544
No 173
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=69.32 E-value=2.4 Score=34.27 Aligned_cols=6 Identities=50% Similarity=1.497 Sum_probs=2.3
Q ss_pred EEEEEE
Q 029300 59 FAFVRY 64 (195)
Q Consensus 59 ~afV~f 64 (195)
|.||.|
T Consensus 162 FmYiRY 167 (453)
T KOG2888|consen 162 FMYIRY 167 (453)
T ss_pred eeEEee
Confidence 333333
No 174
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=66.41 E-value=33 Score=22.26 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=31.2
Q ss_pred HHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhC
Q 029300 30 DDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (195)
Q Consensus 30 ~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 78 (195)
+.+.++++.+| ++..+.+...+ --..+.+++.+.+.|.++...+.
T Consensus 23 ~a~~~~~e~~Gg~l~~~y~t~G~----yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 23 EAVRALIEALGGKLKSFYWTLGE----YDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHcCCEEEEEEEecCC----CCEEEEEEcCCHHHHHHHHHHHH
Confidence 45677787766 78888776543 22567888999888887765443
No 175
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.68 E-value=12 Score=32.45 Aligned_cols=60 Identities=15% Similarity=0.125 Sum_probs=44.3
Q ss_pred EEEeCCCCCCC---HHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEE
Q 029300 18 LLVLNITFRTT---ADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (195)
Q Consensus 18 l~V~nLp~~~~---~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 87 (195)
=+||||+.-.. ...|..+-.+||+|..+.+-.. -.|...+.+.|+.|+.. |+..+.+++.
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 45788875543 3455666668999998877322 47778899999999984 8888888875
No 176
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=63.78 E-value=8.2 Score=31.13 Aligned_cols=33 Identities=27% Similarity=0.203 Sum_probs=24.4
Q ss_pred EEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 60 AFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 60 afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
|||+|.+..+|+.|++.+.... ...+.|..|..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC
Confidence 7999999999999999655443 24456766654
No 177
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=62.23 E-value=4.1 Score=35.96 Aligned_cols=70 Identities=17% Similarity=0.124 Sum_probs=52.5
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEE
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 87 (195)
+||+.|-....+..-+..++...+.++...++.....+...+-++++|.....|+.|.. |.+..+....|
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~ 582 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCL 582 (681)
T ss_pred ceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-cccccccccce
Confidence 78888877777778888888888888777666655566666789999999988877655 56665544443
No 178
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=61.86 E-value=10 Score=25.08 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=17.1
Q ss_pred ccEEEEEEccHHHHHHHHHhh
Q 029300 57 RGFAFVRYKYADEAQKAVDRL 77 (195)
Q Consensus 57 ~g~afV~f~~~~~a~~a~~~l 77 (195)
--|.+++|.+.+.+.+|+..+
T Consensus 66 VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 66 VVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEcCchhHHHHHHHHh
Confidence 468899999999888887654
No 179
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=61.30 E-value=45 Score=22.04 Aligned_cols=78 Identities=13% Similarity=0.164 Sum_probs=44.8
Q ss_pred CCCCCCCCCCCCCCCcEEEEeC------CCCCCCHHHHHHHhh-cCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHH
Q 029300 1 MSHFGKSGPPDIRDTYSLLVLN------ITFRTTADDLFPLFE-KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKA 73 (195)
Q Consensus 1 ~~~~~~~~p~~~~~~~~l~V~n------Lp~~~~~~~l~~~f~-~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a 73 (195)
|.++|+.=-|....+..-|||+ ++..++..+|...+. .++.-..+.|.+.- .+.... ++|...+-++.+..
T Consensus 1 ~cs~GG~i~pr~~dg~l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~~~lky~L-p~edld-~Lisv~~DeDl~~M 78 (97)
T cd06410 1 LCSYGGRILPRPPDGQLRYVGGETRIVSVDRSISFKELVSKLSELFGAGVVVTLKYQL-PDEDLD-ALISVSNDEDLKNM 78 (97)
T ss_pred CcccCCEEeCcCCCCCEEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCceEEEEEc-CCCCcc-eeEEecCcHHHHHH
Confidence 3455543333334444457665 677888888876654 34322212232221 122222 89999999999999
Q ss_pred HHhhCCc
Q 029300 74 VDRLDGR 80 (195)
Q Consensus 74 ~~~l~g~ 80 (195)
++..+..
T Consensus 79 ~~e~~~~ 85 (97)
T cd06410 79 MEEYDRL 85 (97)
T ss_pred HHhhccc
Confidence 9876643
No 180
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=60.91 E-value=30 Score=25.54 Aligned_cols=76 Identities=11% Similarity=0.105 Sum_probs=42.1
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEE-eccCCCCCCcccEEE-EEEccHH---HHHHHHHhhCCceecCcEEEEEe
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVF-IPRDRRTGDSRGFAF-VRYKYAD---EAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~-~~~~~~~g~~~g~af-V~f~~~~---~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
.|.|.-=|..++.++|.++|-..-....+. --.+ ....|-- |-+.+.+ .|++.++.+....+.+.+|.+++
T Consensus 59 ~V~V~yDp~~isy~~LL~~ff~ihDPT~~nrQGnD----~GtqYRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~IvteI 134 (174)
T COG0225 59 AVEVTYDPKVISYEELLEVFFEIHDPTSLNRQGND----RGTQYRSAIYYTNEEQKAIAEASIEELQASGYFKKPIVTEI 134 (174)
T ss_pred EEEEEeCCccccHHHHHHHHheecCCCCCCccCCc----ccccceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCeEEEe
Confidence 577777788899999988886542222211 1111 1112322 3344444 44455566666566677888877
Q ss_pred cccCC
Q 029300 92 AKYGP 96 (195)
Q Consensus 92 a~~~~ 96 (195)
....+
T Consensus 135 ~p~~~ 139 (174)
T COG0225 135 EPAKN 139 (174)
T ss_pred ecccc
Confidence 65433
No 181
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=59.90 E-value=35 Score=20.87 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=35.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEcc
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY 66 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~ 66 (195)
.+|+|.++.=.--...+...+.....|..+.+-... +-++|.|..
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~------~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEK------GTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEccc------CeEEEEEcC
Confidence 467888877666677889999988888888776654 559999987
No 182
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=59.85 E-value=28 Score=24.89 Aligned_cols=55 Identities=25% Similarity=0.260 Sum_probs=33.5
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-CC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHH
Q 029300 18 LLVLNITFRTTADDLFPLFEK-YG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (195)
Q Consensus 18 l~V~nLp~~~~~~~l~~~f~~-~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~ 75 (195)
.|+.-+...++..+|+..++. |+ .|..|..+.-+. |. --|||.+....+|.....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g~--KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-GL--KKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-Cc--eEEEEEECCCCcHHHHHH
Confidence 444456778888888888876 55 555665443321 21 248999976666554433
No 183
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=59.57 E-value=42 Score=21.11 Aligned_cols=63 Identities=13% Similarity=0.299 Sum_probs=44.6
Q ss_pred EeCCCCCCCHHHHHHHh-hcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 20 VLNITFRTTADDLFPLF-EKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 20 V~nLp~~~~~~~l~~~f-~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
|-.+|.-+..+||.... ..||....+....+. -.|-..+.++...|++.++. .-..+.|.|-+
T Consensus 13 Ii~f~RPvkf~dl~~kv~~afGq~mdl~ytn~e--------L~iPl~~Q~DLDkAie~ld~-s~~~ksLRilL 76 (79)
T cd06405 13 IIQFPRPVKFKDLQQKVTTAFGQPMDLHYTNNE--------LLIPLKNQEDLDRAIELLDR-SPHMKSLRILL 76 (79)
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeEEEeccc--------EEEeccCHHHHHHHHHHHcc-CccccceeEeE
Confidence 44567778888887665 579988888775442 77888999999999998776 33334444443
No 184
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=59.00 E-value=26 Score=22.34 Aligned_cols=38 Identities=13% Similarity=0.371 Sum_probs=25.6
Q ss_pred ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceec
Q 029300 41 KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD 83 (195)
Q Consensus 41 ~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 83 (195)
.|..+.... ..+||.|||=.+..++..|+..+.+....
T Consensus 33 ~I~Si~~~~-----~lkGyIyVEA~~~~~V~~ai~gi~~i~~~ 70 (84)
T PF03439_consen 33 NIYSIFAPD-----SLKGYIYVEAERESDVKEAIRGIRHIRGS 70 (84)
T ss_dssp ---EEEE-T-----TSTSEEEEEESSHHHHHHHHTT-TTEEEE
T ss_pred ceEEEEEeC-----CCceEEEEEeCCHHHHHHHHhcccceeec
Confidence 445554432 35699999999999999999987766543
No 185
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=58.16 E-value=48 Score=23.75 Aligned_cols=34 Identities=12% Similarity=0.357 Sum_probs=26.2
Q ss_pred eeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCc
Q 029300 42 VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (195)
Q Consensus 42 i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~ 80 (195)
|..|.++.. ..||.||+....+++..++..+.+.
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCCE
Confidence 556665543 4599999999889999999877765
No 186
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=57.24 E-value=23 Score=26.26 Aligned_cols=49 Identities=24% Similarity=0.189 Sum_probs=33.8
Q ss_pred CCHHHHHHHhhc-CCceeEEEeccCCCCC--CcccEEEEEEccHHHHHHHHHh
Q 029300 27 TTADDLFPLFEK-YGKVVDVFIPRDRRTG--DSRGFAFVRYKYADEAQKAVDR 76 (195)
Q Consensus 27 ~~~~~l~~~f~~-~G~i~~v~~~~~~~~g--~~~g~afV~f~~~~~a~~a~~~ 76 (195)
.|+++|..+..- -|++..|.+-... .+ ..+|-.||+|...+.|.++++.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 455555555432 2688888775543 23 4578899999999999998774
No 187
>PRK02886 hypothetical protein; Provisional
Probab=57.20 E-value=47 Score=21.53 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=35.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCcee
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 82 (195)
+.+-.||+.+|-. ...+.+||.|..+.=.. .|+ |-|-|.++|+..++.|....|
T Consensus 5 R~glIVyl~~~k~-------~r~LrkyG~I~Y~Skr~--------kYv-vlYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 5 RQGIIVWLHSLKQ-------AKQLRKFGNVHYVSKRL--------KYA-VLYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred eeEEEEEEeecHh-------HHHHhhcCcEEEEeccc--------cEE-EEEECHHHHHHHHHHHhcCCC
Confidence 3455677765532 23457899998774322 344 557889999999988876644
No 188
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=56.55 E-value=45 Score=28.99 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=34.5
Q ss_pred HHHHHHHhh----cCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhC
Q 029300 29 ADDLFPLFE----KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (195)
Q Consensus 29 ~~~l~~~f~----~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 78 (195)
.-+|..+|. .+|-|+++.|...+... .....++.|.+.++|..|+..+.
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~-~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPP-VARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCc-ceEEEEEECCCHHHHHHHHHHHH
Confidence 456777664 57788888776655332 33567889999999999887653
No 189
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=56.29 E-value=27 Score=22.61 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=27.2
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEE
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRY 64 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f 64 (195)
-|||+|++..+-+.-...+.+..+.- .+.|+... ....||+|-.+
T Consensus 27 GVyVg~~s~rVRe~lW~~v~~~~~~G-~a~m~~~~--~neqG~~~~t~ 71 (86)
T PF09707_consen 27 GVYVGNVSARVRERLWERVTEWIGDG-SAVMVWSD--NNEQGFDFRTL 71 (86)
T ss_pred CcEEcCCCHHHHHHHHHHHHhhCCCc-cEEEEEcc--CCCCCEEEEEe
Confidence 39999999888766555555544332 23333322 12568998776
No 190
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=55.75 E-value=14 Score=29.20 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=22.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCce
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKV 42 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i 42 (195)
....|+|||++++..-|..++...-.+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 457899999999999999998765444
No 191
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=53.41 E-value=17 Score=22.39 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=19.9
Q ss_pred cEEEEEEccHHHHHHHHHhhCCcee
Q 029300 58 GFAFVRYKYADEAQKAVDRLDGRVV 82 (195)
Q Consensus 58 g~afV~f~~~~~a~~a~~~l~g~~~ 82 (195)
.+.+|.|.+..+|.+|-+.|....+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 4689999999999999887765433
No 192
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=53.38 E-value=52 Score=20.30 Aligned_cols=44 Identities=23% Similarity=0.340 Sum_probs=27.9
Q ss_pred HHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhC
Q 029300 30 DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (195)
Q Consensus 30 ~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 78 (195)
.+|.+.+..+| +....|.- .|-. +++|+.+.+.+.++.+++.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sG---sG~G-~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSG---SGGG-PTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEET---TSSS-SEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCC---CCCC-CeEEEEECCHHHHHHHHHHHH
Confidence 45667777888 44444432 2101 678888888888888877653
No 193
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=53.18 E-value=50 Score=22.72 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=27.6
Q ss_pred CCCHHHHHHHhhc-CC----ceeEEEeccCCCCCCcccEEEEEEccHHHHHH
Q 029300 26 RTTADDLFPLFEK-YG----KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQK 72 (195)
Q Consensus 26 ~~~~~~l~~~f~~-~G----~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~ 72 (195)
.++.++|.+-+.+ |- .|.-+.+-.....|.+.|||.| |.+.+.|..
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 4677788776654 32 2222334445556778889987 666666554
No 194
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=53.16 E-value=7.5 Score=31.58 Aligned_cols=12 Identities=33% Similarity=0.747 Sum_probs=6.4
Q ss_pred CHHHHHHHhhcC
Q 029300 28 TADDLFPLFEKY 39 (195)
Q Consensus 28 ~~~~l~~~f~~~ 39 (195)
...+|...|+.|
T Consensus 170 pp~dLw~WyEpy 181 (453)
T KOG2888|consen 170 PPADLWDWYEPY 181 (453)
T ss_pred ChhHHHHHhhhh
Confidence 344555555555
No 195
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=53.12 E-value=45 Score=22.00 Aligned_cols=49 Identities=10% Similarity=0.027 Sum_probs=28.6
Q ss_pred EEEEeCCCCCCCHHHH---HHHhhcCCceeEEEe--ccCCCCCCcccEEEEEEc
Q 029300 17 SLLVLNITFRTTADDL---FPLFEKYGKVVDVFI--PRDRRTGDSRGFAFVRYK 65 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l---~~~f~~~G~i~~v~~--~~~~~~g~~~g~afV~f~ 65 (195)
..|+.|||.++.+.++ +.+|..++.-..|.+ ......+...|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 4689999999887665 456666665445544 222334555666655443
No 196
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=52.80 E-value=53 Score=20.28 Aligned_cols=56 Identities=14% Similarity=0.250 Sum_probs=36.9
Q ss_pred EEEeCCCCCCCHHHHHHHhh-cCCce-eEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhC
Q 029300 18 LLVLNITFRTTADDLFPLFE-KYGKV-VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (195)
Q Consensus 18 l~V~nLp~~~~~~~l~~~f~-~~G~i-~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 78 (195)
++.-.||..++.++|...+. .|+.. ..+.|......| -+|...+.++...|+..+.
T Consensus 12 ~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedg-----d~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 12 TRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDG-----DLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCC-----CEEEecCHHHHHHHHHHHH
Confidence 55556788999999877664 45532 233443322222 4899999999999998654
No 197
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=51.94 E-value=28 Score=27.10 Aligned_cols=72 Identities=6% Similarity=0.033 Sum_probs=38.0
Q ss_pred CcEEEEeCCCCCCCH----HHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEE-ccHHHHHHHHHhhCCceecCcEEE
Q 029300 15 TYSLLVLNITFRTTA----DDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRY-KYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~----~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f-~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
...|||++|...+-. +.|...+.+.+ .++.+.+... ..||+.-.. .+.++...+++++.+..+-...+-
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ss-----y~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL 111 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSS-----YNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVL 111 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeecccc-----ccccccccccccHHHHHHHHHHhhccCcccceEE
Confidence 457999998765322 33444443333 3333333222 124544333 367788888887776665444444
Q ss_pred EEe
Q 029300 89 VQF 91 (195)
Q Consensus 89 v~~ 91 (195)
|..
T Consensus 112 ~Gh 114 (299)
T KOG4840|consen 112 VGH 114 (299)
T ss_pred Eec
Confidence 443
No 198
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=51.40 E-value=15 Score=31.91 Aligned_cols=37 Identities=27% Similarity=0.491 Sum_probs=33.2
Q ss_pred cEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 58 GFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 58 g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
.++++.|++...+.+|+..++|..+.+..+.|..+..
T Consensus 64 ~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~ 100 (534)
T KOG2187|consen 64 KYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGAT 100 (534)
T ss_pred CceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccc
Confidence 7899999999999999999999999888888877654
No 199
>PHA03008 hypothetical protein; Provisional
Probab=51.34 E-value=44 Score=25.26 Aligned_cols=49 Identities=16% Similarity=0.227 Sum_probs=34.9
Q ss_pred CCCCCCCCCCCCCC-CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEecc
Q 029300 1 MSHFGKSGPPDIRD-TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPR 49 (195)
Q Consensus 1 ~~~~~~~~p~~~~~-~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~ 49 (195)
|++..-+......+ +-.+||.|+..--...-|+.+|.+|..+.+|.++.
T Consensus 6 msn~n~p~~~~~~~~~d~~~~snit~~h~~n~i~~ff~~~d~~~~~ifvp 55 (234)
T PHA03008 6 MSNINLPRNNKIDEICDIAFISNITHIHDHNIIKIFFDKFDDFDEIIFVP 55 (234)
T ss_pred ecccCCccccCCcccccEEEEecccccccccHHHHHHhhccccceEEEcc
Confidence 44444333333333 44789999999888899999999999988876654
No 200
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=49.78 E-value=51 Score=19.15 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=18.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCC-ceeEEEec
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYG-KVVDVFIP 48 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G-~i~~v~~~ 48 (195)
+|.|..-...-.-.+|..+|..+| .|..+...
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~ 34 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVG 34 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEee
Confidence 444543333334567888888876 56666654
No 201
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=49.57 E-value=11 Score=24.58 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=18.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHh
Q 029300 15 TYSLLVLNITFRTTADDLFPLF 36 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f 36 (195)
..+|-|.|||..+.+++|++.+
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeE
Confidence 5689999999999999998654
No 202
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=49.07 E-value=75 Score=21.75 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=33.5
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEc--c------HHHHHHHHHhhCCceecCcEEE
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK--Y------ADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~--~------~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
.||||++|.....+.|++. .+..|..+.-... .....++-++.|. + .+....|+..++...-.|.+|-
T Consensus 7 ~l~~G~~~~~~~~~~l~~~--gi~~Vi~l~~~~~--~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~Vl 82 (138)
T smart00195 7 HLYLGSYSSALNLALLKKL--GITHVINVTNEVP--NLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVL 82 (138)
T ss_pred CeEECChhHcCCHHHHHHc--CCCEEEEccCCCC--CCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEE
Confidence 3999999976654444332 3334554432221 1122344554443 2 1223444444444434455555
Q ss_pred EEe
Q 029300 89 VQF 91 (195)
Q Consensus 89 v~~ 91 (195)
|.-
T Consensus 83 VHC 85 (138)
T smart00195 83 VHC 85 (138)
T ss_pred EEC
Confidence 543
No 203
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=48.78 E-value=57 Score=27.46 Aligned_cols=51 Identities=20% Similarity=0.187 Sum_probs=34.7
Q ss_pred CCCHHHHHHHhhc----CCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhh
Q 029300 26 RTTADDLFPLFEK----YGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (195)
Q Consensus 26 ~~~~~~l~~~f~~----~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l 77 (195)
....-+|..+|.. +|-|+++.|...+... ...+.++.|.+.++|..|+..+
T Consensus 143 ~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p~-~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 143 DVAGYDLTGLFVGSEGTLGIVTEATLKLLPKPE-NIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred CCCCCChhhhcccCCccceEEEEEEEEeecCCC-ccEEEEEECCCHHHHHHHHHHH
Confidence 3444567777743 6778888776655332 3356678999999999988554
No 204
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=48.01 E-value=8.4 Score=31.49 Aligned_cols=48 Identities=23% Similarity=0.264 Sum_probs=36.7
Q ss_pred HHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCc
Q 029300 29 ADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (195)
Q Consensus 29 ~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~ 80 (195)
...|.+++.+.|.|..-.|..- .+.|.+||.+-..++++++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rt----FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRT----FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHH----hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 4678888899998765444332 23388999999999999999988864
No 205
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=46.25 E-value=25 Score=28.74 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=34.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCce-----eEEEeccCC-----CCCCcccEEEEEEccHHHHHHHHHhhCCc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKV-----VDVFIPRDR-----RTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i-----~~v~~~~~~-----~~g~~~g~afV~f~~~~~a~~a~~~l~g~ 80 (195)
...+||.++...+..+.|..+-+..-+. ..+..+... .-...-.|+.|.|.|+++|.+..+. +|.
T Consensus 160 a~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~af~~~-~~~ 234 (343)
T KOG2854|consen 160 AKVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAAAFARA-HGW 234 (343)
T ss_pred eeEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHHHHHHh-hCC
Confidence 4567788877777665554433222111 111111000 0011235899999999999988773 444
No 206
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=45.55 E-value=62 Score=20.10 Aligned_cols=39 Identities=15% Similarity=0.313 Sum_probs=27.6
Q ss_pred HhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCcee
Q 029300 35 LFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (195)
Q Consensus 35 ~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 82 (195)
.+.+||.|..+.=.. .|+ |.|-|.++++..++.|....|
T Consensus 16 ~L~kfG~i~Y~Skk~--------kYv-vlYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYVSKKM--------KYV-VLYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEEECCc--------cEE-EEEECHHHHHHHHHHHhcCCC
Confidence 467899998874322 344 457789999999888876544
No 207
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=45.08 E-value=31 Score=27.79 Aligned_cols=6 Identities=17% Similarity=0.584 Sum_probs=2.7
Q ss_pred EEccHH
Q 029300 63 RYKYAD 68 (195)
Q Consensus 63 ~f~~~~ 68 (195)
.|.+.|
T Consensus 110 nydT~E 115 (335)
T KOG0113|consen 110 NYDTSE 115 (335)
T ss_pred cccccH
Confidence 455443
No 208
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=45.06 E-value=6.9 Score=23.98 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=26.4
Q ss_pred HHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhC
Q 029300 30 DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (195)
Q Consensus 30 ~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 78 (195)
++|++.|..+.....+.- -.+|..|.+.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~vk----------L~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVK----------LKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhh----------hhhccCCCCHHHHHHHHHHhh
Confidence 577777766554433211 138999999999888877653
No 209
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=43.81 E-value=76 Score=19.47 Aligned_cols=64 Identities=13% Similarity=0.129 Sum_probs=38.4
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCc
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~ 80 (195)
+|.|......---.+|...+...| .|..+.+......+......-|+..+.++....|..|.+.
T Consensus 8 ~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i 72 (80)
T PF13291_consen 8 RLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQI 72 (80)
T ss_dssp EEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTS
T ss_pred EEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCC
Confidence 345544444444577888888776 6778877654223333344446667888888888877643
No 210
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=43.78 E-value=24 Score=27.64 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhh
Q 029300 15 TYSLLVLNITFRTTADDLFPLFE 37 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~ 37 (195)
...++|+|||+.++..-|..++.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHH
T ss_pred CceEEEEEecccchHHHHHHHhh
Confidence 45789999999999999988886
No 211
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=43.35 E-value=24 Score=21.38 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=23.5
Q ss_pred CCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEE
Q 029300 27 TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFV 62 (195)
Q Consensus 27 ~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV 62 (195)
.-+.+|..+|-+-.+|.++.|...+.-++ |-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~~--G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIRK--GAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeeeC--CceeE
Confidence 34566888888888999998877654433 44555
No 212
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=43.32 E-value=59 Score=19.92 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHhhcCCceeEEEec-cCCCCCCcccEEEEEEc-cHHHHHHHHHhhC
Q 029300 25 FRTTADDLFPLFEKYGKVVDVFIP-RDRRTGDSRGFAFVRYK-YADEAQKAVDRLD 78 (195)
Q Consensus 25 ~~~~~~~l~~~f~~~G~i~~v~~~-~~~~~g~~~g~afV~f~-~~~~a~~a~~~l~ 78 (195)
..+.+..|.++...||--.+|..- .+...+.+.|.-+|++. +.++.++|+..|.
T Consensus 12 ~~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~ 67 (76)
T PF09383_consen 12 NSAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLR 67 (76)
T ss_dssp CSSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHH
Confidence 356666777777888743333211 11124556788889995 4455677777664
No 213
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=42.54 E-value=43 Score=19.12 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=22.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCce
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKV 42 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i 42 (195)
..++|.+.......++|.+++..+|..
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 467888877688899999999998863
No 214
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=42.42 E-value=1.1e+02 Score=26.28 Aligned_cols=69 Identities=22% Similarity=0.108 Sum_probs=44.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCC----ceeEEEeccCCCCCCc--------ccEEEEEEccHHHHHHHHHhhCC
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYG----KVVDVFIPRDRRTGDS--------RGFAFVRYKYADEAQKAVDRLDG 79 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G----~i~~v~~~~~~~~g~~--------~g~afV~f~~~~~a~~a~~~l~g 79 (195)
..++.+|.+.+=.+.++.+.|++++..+. .+.-+.+..+..+|.. .-.++||..+..++++.+..+|.
T Consensus 94 ~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~eek~I~eiNt 173 (460)
T COG1207 94 DYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKEINT 173 (460)
T ss_pred CCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHHhcCcEEee
Confidence 34456788888778899999998886652 3333333222224332 23578888888888888877765
Q ss_pred c
Q 029300 80 R 80 (195)
Q Consensus 80 ~ 80 (195)
.
T Consensus 174 G 174 (460)
T COG1207 174 G 174 (460)
T ss_pred e
Confidence 4
No 215
>PF05727 UPF0228: Uncharacterised protein family (UPF0228); InterPro: IPR008887 This small family of proteins is currently restricted to Methanosarcina species. Members of this family are about 200 residues in length, except for Q8TMK1 from SWISSPROT that has two copies of this region. Although the function of this region is unknown the pattern of conservation suggests that this may be an enzyme, including multiple conserved aspartate and glutamate residues. The most conserved motif in these proteins is NEL/MEXNE/D, where X can be any amino acid, and is found at the C terminus of these proteins.
Probab=42.33 E-value=84 Score=21.83 Aligned_cols=58 Identities=14% Similarity=0.406 Sum_probs=30.1
Q ss_pred EEeCCCCC-CCHHHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEcc--------HHHHHHHHHhhCCceecCcEEE
Q 029300 19 LVLNITFR-TTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKY--------ADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 19 ~V~nLp~~-~~~~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~--------~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
+|--|+.. +..+.+.+++.++. +|+... +|+|.|.+ +++|.+....| +.....|.
T Consensus 55 yiI~vSEqai~d~~FL~iL~K~nLqvKKfV------------wCyI~f~dgs~nywIpe~DAirIKnEL---E~NE~il~ 119 (127)
T PF05727_consen 55 YIIMVSEQAIEDKNFLEILEKYNLQVKKFV------------WCYIRFGDGSKNYWIPEKDAIRIKNEL---EMNEKILI 119 (127)
T ss_pred EEEEeehhhcCchhHHHHHHhcCcceeEEE------------EEEEEcCCCCcccccchHHHHHHHHHH---hcCCcEEE
Confidence 33334533 44457778888875 444332 36666643 34444444433 33445566
Q ss_pred EEe
Q 029300 89 VQF 91 (195)
Q Consensus 89 v~~ 91 (195)
|.+
T Consensus 120 V~~ 122 (127)
T PF05727_consen 120 VYL 122 (127)
T ss_pred EEe
Confidence 654
No 216
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=41.83 E-value=94 Score=19.96 Aligned_cols=55 Identities=9% Similarity=0.085 Sum_probs=34.6
Q ss_pred EEEEeCCCCCCCHHHHHHHhhc-CC----ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhC
Q 029300 17 SLLVLNITFRTTADDLFPLFEK-YG----KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~-~G----~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 78 (195)
-|+|..++..++-++|.+.+.. |. ..-.++++-. .| -.|+|.+.++.+.|+..+.
T Consensus 10 di~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DE--EG-----Dp~tiSS~~EL~EA~rl~~ 69 (83)
T cd06404 10 DIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDE--EG-----DPCTISSQMELEEAFRLYE 69 (83)
T ss_pred cEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECC--CC-----CceeecCHHHHHHHHHHHH
Confidence 4888889999888776554432 21 1223343322 33 3478899999999987554
No 217
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=41.76 E-value=8.7 Score=27.10 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=39.3
Q ss_pred EEEeCCC--CCCCHHHHHHHhhc----CCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 18 LLVLNIT--FRTTADDLFPLFEK----YGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 18 l~V~nLp--~~~~~~~l~~~f~~----~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
..|+.+. ..++...|...+.+ .|.+.-..+. .++..+.|.+.+++..++. .....+.+..|.++.
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~--------~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~ 88 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLG--------DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQR 88 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeC--------CCeEEEEEEeccceeEEEe-cccccccccchhhhh
Confidence 3444442 23566666666643 3333333331 1689999999999999887 355566766655543
No 218
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=41.48 E-value=72 Score=20.63 Aligned_cols=53 Identities=19% Similarity=0.173 Sum_probs=34.1
Q ss_pred EEEeCCCCCCCHHHHHHHh-hcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHh
Q 029300 18 LLVLNITFRTTADDLFPLF-EKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (195)
Q Consensus 18 l~V~nLp~~~~~~~l~~~f-~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 76 (195)
|.+-.+|+.++.++|.+.+ ..||.-..+.|.+... | -+|+..+.++.+.|+..
T Consensus 13 v~~i~v~~~i~f~dL~~kIrdkf~~~~~~~iKykDE-G-----D~iti~sq~DLd~Ai~~ 66 (86)
T cd06408 13 TRYIMIGPDTGFADFEDKIRDKFGFKRRLKIKMKDD-G-----DMITMGDQDDLDMAIDT 66 (86)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCCceEEEEEcC-C-----CCccccCHHHHHHHHHH
Confidence 5555689999988886555 3455333444433222 3 57888888888888764
No 219
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=41.24 E-value=30 Score=24.24 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=27.9
Q ss_pred cEEEEeCCCCC-CCHHHHHHHhhcCCceeEEEecc
Q 029300 16 YSLLVLNITFR-TTADDLFPLFEKYGKVVDVFIPR 49 (195)
Q Consensus 16 ~~l~V~nLp~~-~~~~~l~~~f~~~G~i~~v~~~~ 49 (195)
.-|.|.|||.. .+++.|..+.+.+|++..+....
T Consensus 105 vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 105 VWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred hhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 34778899988 67788899999999999887754
No 220
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.12 E-value=1.3e+02 Score=21.51 Aligned_cols=47 Identities=17% Similarity=0.252 Sum_probs=36.9
Q ss_pred CCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhC
Q 029300 22 NITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (195)
Q Consensus 22 nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 78 (195)
.|+..+.++-|+++.+..|.|.+.. -.+ ..+.|-+.+....|++.+-
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEIG 164 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHHH
Confidence 3777888899999999999887765 222 4567889999999998653
No 221
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=41.00 E-value=29 Score=27.41 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=18.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhhc
Q 029300 17 SLLVLNITFRTTADDLFPLFEK 38 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~ 38 (195)
.+.|+|||+.++..-|..++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5789999999998888888754
No 222
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=40.66 E-value=23 Score=18.86 Aligned_cols=17 Identities=29% Similarity=0.430 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHhhcCCc
Q 029300 25 FRTTADDLFPLFEKYGK 41 (195)
Q Consensus 25 ~~~~~~~l~~~f~~~G~ 41 (195)
..+++++|+++|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46889999999987653
No 223
>KOG0829 consensus 60S ribosomal protein L18A [Translation, ribosomal structure and biogenesis]
Probab=40.46 E-value=31 Score=24.85 Aligned_cols=64 Identities=17% Similarity=0.276 Sum_probs=40.0
Q ss_pred CCCCCCCCCCCCcEEEEeCC--CCCC-CH-------HHHHHHhhcCCceeEEEeccCCCCCCcccEE-EEEEccH
Q 029300 4 FGKSGPPDIRDTYSLLVLNI--TFRT-TA-------DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFA-FVRYKYA 67 (195)
Q Consensus 4 ~~~~~p~~~~~~~~l~V~nL--p~~~-~~-------~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~a-fV~f~~~ 67 (195)
+|...|.+..+...||.+.| |.++ .. ..|..+=..-|+|..|.-+..+....-+.|| ++.|.+.
T Consensus 6 vGr~lPTe~~p~p~l~~m~ifa~N~V~AKsrfwyfl~~l~KvKks~Geiv~i~qi~E~~p~~vkNfGIwlrYdSR 80 (169)
T KOG0829|consen 6 VGRALPTEKEPTPKLYRMRIFAPNHVVAKSRFWYFLSKLKKVKKSSGEIVAINQIFEKSPLKVKNFGIWLRYDSR 80 (169)
T ss_pred eeeecCCCCCCCCceEEEEEeccceeehhHHHHHHHHHHHHHhhcCceEEEeceecCCCCceeeeeEEEEEEccC
Confidence 46667777777778888765 2222 22 2233333446999999877766666667776 4666654
No 224
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=39.99 E-value=28 Score=27.94 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=19.0
Q ss_pred EEEEeCCCCCCCHHHHHHHhhc
Q 029300 17 SLLVLNITFRTTADDLFPLFEK 38 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~ 38 (195)
.+.|+|||+.++...|..++..
T Consensus 103 d~VvaNlPY~Istpil~~ll~~ 124 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAH 124 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhc
Confidence 4789999999999999888854
No 225
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=39.98 E-value=1.6e+02 Score=25.93 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=27.4
Q ss_pred ccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecccC
Q 029300 57 RGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (195)
Q Consensus 57 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 95 (195)
.|-| +.|+++++|.+|+. ++..-.|..|.|.+.-++
T Consensus 383 ~G~A-~VF~see~a~~ai~--~g~i~~gdVvViRyeGPk 418 (535)
T TIGR00110 383 EGPA-KVFESEEEALEAIL--GGKIKEGDVVVIRYEGPK 418 (535)
T ss_pred EEeE-EEECCHHHHHHHHh--cCCCCCCeEEEEeCCCCC
Confidence 3445 56999999999988 466667888888887554
No 226
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=39.86 E-value=59 Score=21.17 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=18.3
Q ss_pred cEEEEEEccHHHHHHHHHhhCCc
Q 029300 58 GFAFVRYKYADEAQKAVDRLDGR 80 (195)
Q Consensus 58 g~afV~f~~~~~a~~a~~~l~g~ 80 (195)
||.||++.-.+++..++..+.|.
T Consensus 60 GYvFv~~~~~~~~~~~i~~~~~v 82 (106)
T smart00738 60 GYIFVEADLEDEVWTAIRGTPGV 82 (106)
T ss_pred CEEEEEEEeCCcHHHHHhcCCCc
Confidence 99999998767777777777664
No 227
>TIGR00279 L10e ribosomal protein L10.e. L10.e is distantly related to eubacterial ribosomal protein L16.
Probab=39.71 E-value=1.5e+02 Score=21.90 Aligned_cols=26 Identities=19% Similarity=0.074 Sum_probs=14.7
Q ss_pred cEEEEEEc----cHHHHHHHHHhhCCceecC
Q 029300 58 GFAFVRYK----YADEAQKAVDRLDGRVVDG 84 (195)
Q Consensus 58 g~afV~f~----~~~~a~~a~~~l~g~~~~g 84 (195)
|..+.++. +.+.|..||.. -...|..
T Consensus 129 Gqiifei~~~~~~~~~AkeAlr~-A~~KLP~ 158 (172)
T TIGR00279 129 GQKIFSVWTKPSNFDVAKEALRR-AAMKFPV 158 (172)
T ss_pred CCEEEEEEeecCCHHHHHHHHHH-HhccCCC
Confidence 33445553 55888888873 4444433
No 228
>PRK02302 hypothetical protein; Provisional
Probab=39.62 E-value=80 Score=20.56 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=35.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCcee
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 82 (195)
+.+-.||+..+-. ...+.+||.|..+.=.. .|+ |-|-+.++|+..++.|....|
T Consensus 7 R~glIVyl~~~k~-------~r~LrkfG~I~Y~Skk~--------kYv-vlYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 7 RIGLIVYLYYNRD-------ARKLSKYGDIVYHSKRS--------RYL-VLYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred eeEEEEEEeecHh-------HHHHhhcCcEEEEeccc--------cEE-EEEECHHHHHHHHHHHhcCCC
Confidence 3455677765432 23457899998774322 344 557889999999988876643
No 229
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=39.30 E-value=1.6e+02 Score=21.80 Aligned_cols=62 Identities=15% Similarity=0.189 Sum_probs=32.7
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHhh------c----CCceeEEEeccCCCCCCcccEEEEEEc----cHHHHHHHHHhhCC
Q 029300 15 TYSLLVLNITFR-TTADDLFPLFE------K----YGKVVDVFIPRDRRTGDSRGFAFVRYK----YADEAQKAVDRLDG 79 (195)
Q Consensus 15 ~~~l~V~nLp~~-~~~~~l~~~f~------~----~G~i~~v~~~~~~~~g~~~g~afV~f~----~~~~a~~a~~~l~g 79 (195)
++.|+|.-+|.. +|+.-+..... . +|.+........+ |..++++. +.+.|..|+.. -.
T Consensus 81 ~~k~wIrvfP~~~lt~kp~~~rmGAdRmg~GMr~akG~p~~wva~Vk~------G~ilfei~~~~~~~~~akeAlr~-a~ 153 (172)
T PRK04199 81 NYHLKIRVYPHHVLRENKMATGAGADRVSDGMRLAFGKPVGTAARVEK------GQKIFTVRVNPEHLEAAKEALRR-AA 153 (172)
T ss_pred ccEEEEEeCCCcceecChhHhhcchhhhccCcccCCCCccEEEEEECc------CCEEEEEEecCCCHHHHHHHHHH-hh
Confidence 456777666655 34444433222 2 5655543333322 44566665 67788888873 33
Q ss_pred ceec
Q 029300 80 RVVD 83 (195)
Q Consensus 80 ~~~~ 83 (195)
..|.
T Consensus 154 ~KLP 157 (172)
T PRK04199 154 MKLP 157 (172)
T ss_pred ccCC
Confidence 4443
No 230
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=39.18 E-value=92 Score=23.15 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=38.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCC-CCcccEEEEEEccHHHHHHHHHhh
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRT-GDSRGFAFVRYKYADEAQKAVDRL 77 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~-g~~~g~afV~f~~~~~a~~a~~~l 77 (195)
..=||+|.....+-..|-+.|...|. .|.++..+.. ..+.++-+|.|.+.++...++..+
T Consensus 19 ~VR~ItN~SSG~~G~~lA~~~~~~Ga--~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~ 79 (185)
T PF04127_consen 19 PVRFITNRSSGKMGAALAEEAARRGA--EVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKEL 79 (185)
T ss_dssp SSEEEEES--SHHHHHHHHHHHHTT---EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHH
T ss_pred CceEecCCCcCHHHHHHHHHHHHCCC--EEEEEecCccccccccceEEEecchhhhhhhhccc
Confidence 35789999998888889888888774 2333332221 224588999999999988888754
No 231
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=38.97 E-value=1.1e+02 Score=20.34 Aligned_cols=46 Identities=20% Similarity=0.332 Sum_probs=23.7
Q ss_pred CCCHHHHHHHhh-cCCceeEEEe----ccCCCCCCcccEEEEEEccHHHHHH
Q 029300 26 RTTADDLFPLFE-KYGKVVDVFI----PRDRRTGDSRGFAFVRYKYADEAQK 72 (195)
Q Consensus 26 ~~~~~~l~~~f~-~~G~i~~v~~----~~~~~~g~~~g~afV~f~~~~~a~~ 72 (195)
..+..+|.+.+. .|+.-.++.+ ......|.+.|||.| |.+.+.|..
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 456777776654 4653222222 222233455666655 666666554
No 232
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=38.57 E-value=77 Score=29.83 Aligned_cols=34 Identities=12% Similarity=0.345 Sum_probs=26.6
Q ss_pred CcccEEEEEEccHHHHHHHHHhhCCceecCcEEEE
Q 029300 55 DSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (195)
Q Consensus 55 ~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 89 (195)
..+||-||+=..+...+.||+.|-+..+. +.|.|
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~~-~~~lV 241 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYAN-RILLV 241 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhheec-cEEEE
Confidence 35699999999999999999988777655 44444
No 233
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=38.45 E-value=97 Score=20.28 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=32.3
Q ss_pred CCCCCCHHHHHHHhhcCCce-eEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhC
Q 029300 23 ITFRTTADDLFPLFEKYGKV-VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (195)
Q Consensus 23 Lp~~~~~~~l~~~f~~~G~i-~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 78 (195)
+.+.++...|...|...|.- .-..+-.| .=+.+|.|.|.+.+.+..|.+.|-
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD----~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRKD----YWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhccc----cceEeEEEECCChHHHHHHHHHHH
Confidence 45566777777666555531 11122111 113689999999999999987654
No 234
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=38.33 E-value=1.1e+02 Score=19.97 Aligned_cols=57 Identities=12% Similarity=0.220 Sum_probs=31.1
Q ss_pred EEEEeCCCCCCCHHHHHHH-------hhcC-CceeEEEeccCC-----CCCCccc-EEEEEEccHHHHHHHHH
Q 029300 17 SLLVLNITFRTTADDLFPL-------FEKY-GKVVDVFIPRDR-----RTGDSRG-FAFVRYKYADEAQKAVD 75 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~-------f~~~-G~i~~v~~~~~~-----~~g~~~g-~afV~f~~~~~a~~a~~ 75 (195)
++|| |.+.++++++..+ +... |.|..+...... ..+...| |.++.|.-..++.+.++
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 4555 3556666665544 4443 466665432111 1234456 57888887666666665
No 235
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=37.82 E-value=1e+02 Score=24.00 Aligned_cols=62 Identities=21% Similarity=0.259 Sum_probs=42.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCC-ceeEEEeccCC---CCCCcccEEEEEEccHHHHHHHHHhh
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDR---RTGDSRGFAFVRYKYADEAQKAVDRL 77 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G-~i~~v~~~~~~---~~g~~~g~afV~f~~~~~a~~a~~~l 77 (195)
.-+|.|.-||-.-.++-+..+|++.| .|.--.+..+. ..|.+ .|..|+.....-...|+.+|
T Consensus 118 pL~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~~Ld~~fP~WG~S-~y~~l~L~g~~rl~daL~HL 183 (245)
T PF12623_consen 118 PLEVRLPALPCRGGEELVRRLFEPLGWTVTAEPVPLDEQFPEWGDS-RYVDLTLTGTVRLADALNHL 183 (245)
T ss_pred ceEEEeeeeecCCcHHHHHHhhcCcCceEEeEeccCCccCccccCC-cceEEEEeeeEEHHHHHhhh
Confidence 45788888998889999999999999 44333344333 23444 57777777666666666654
No 236
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=37.48 E-value=1.6e+02 Score=22.04 Aligned_cols=74 Identities=8% Similarity=0.116 Sum_probs=37.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEE-EEEccHHHHH---HHHHhhCCceecCcEEEEEec
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAF-VRYKYADEAQ---KAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~af-V~f~~~~~a~---~a~~~l~g~~~~g~~l~v~~a 92 (195)
.|.|.-=|..++.++|.++|-..-.-..+.-.. +-....|.- |-+.+.++.+ +++..|+.....+.+|.+++.
T Consensus 61 ~V~V~yDp~~iSy~~LL~~Ff~~hDPt~~~~Qg---~D~G~QYRS~If~~~~eQ~~~a~~~~~~~~~~~~~~~~i~Tei~ 137 (186)
T PRK13014 61 AVQITYDPKQVSYENLLQIFFSTHDPTQLNRQG---PDRGEQYRSAIFYHDEEQKKVAEAYIAQLDEAGIFKKPIVTPIK 137 (186)
T ss_pred EEEEEECCCcCCHHHHHHHHHHhcCCCccCCCC---CCCCCCceEEEEeCCHHHHHHHHHHHHHHHhccccCCCcEEEEe
Confidence 477776788899999998886542222211100 001123333 4444555444 445555433233566766665
Q ss_pred c
Q 029300 93 K 93 (195)
Q Consensus 93 ~ 93 (195)
.
T Consensus 138 p 138 (186)
T PRK13014 138 P 138 (186)
T ss_pred c
Confidence 4
No 237
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=37.27 E-value=1.9e+02 Score=25.59 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=27.2
Q ss_pred ccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecccC
Q 029300 57 RGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (195)
Q Consensus 57 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 95 (195)
.|-| +.|+++++|.+||. ++..-.|..|.|.+.-++
T Consensus 398 ~GpA-~VF~see~a~~ai~--~g~I~~gdVvViRyeGPk 433 (552)
T PRK00911 398 TGPA-RVFDSEEEAMEAIL--AGKIKAGDVVVIRYEGPK 433 (552)
T ss_pred eeeE-EEECCHHHHHHHHh--cCCCCCCeEEEEeCCCCC
Confidence 3445 56999999999988 466667888888887543
No 238
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=37.24 E-value=44 Score=25.93 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.2
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCC
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYG 40 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G 40 (195)
.+.|+|||+.++...|..++..+|
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~ 119 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPK 119 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCC
Confidence 388999999999999999986444
No 239
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=37.16 E-value=47 Score=20.59 Aligned_cols=63 Identities=16% Similarity=0.309 Sum_probs=38.0
Q ss_pred eCCCCCCCHHHHHHHhh-cCCce-eEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 21 LNITFRTTADDLFPLFE-KYGKV-VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 21 ~nLp~~~~~~~l~~~f~-~~G~i-~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
-.++..++.++|..... .||.. ..+.+.+.... | -+|...+.++...|+..+... ++..|++.
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~d----g-D~V~i~sd~Dl~~a~~~~~~~--~~~~lrl~ 80 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDED----G-DLVTISSDEDLQEAIEQAKES--GSKTLRLF 80 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETT----S-SEEEESSHHHHHHHHHHHHHC--TTSCEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCC----C-CEEEeCCHHHHHHHHHHHHhc--CCCcEEEE
Confidence 55677778888876664 45542 22333221111 2 689999999999999876543 33344443
No 240
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=36.90 E-value=85 Score=20.76 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=40.3
Q ss_pred CcEEEEeCCCCCCC--HHHHHHHhhcCCceeEEEeccCCC-CCCcccEEEEEEcc--HHHHHHHHHhhCCcee-cCcEEE
Q 029300 15 TYSLLVLNITFRTT--ADDLFPLFEKYGKVVDVFIPRDRR-TGDSRGFAFVRYKY--ADEAQKAVDRLDGRVV-DGREIT 88 (195)
Q Consensus 15 ~~~l~V~nLp~~~~--~~~l~~~f~~~G~i~~v~~~~~~~-~g~~~g~afV~f~~--~~~a~~a~~~l~g~~~-~g~~l~ 88 (195)
+..|.|+-.....+ .+.|.++|.+.+.|..+.+..-.. .+...-+-.|+|.. .+.+-.+|..+-...+ ++..|.
T Consensus 5 g~~v~l~~P~~~p~~l~~aL~~~~~~~~~V~~Ayl~~~~~~~~~~~~li~vd~~~~~~~~~~~~i~~~~~~~~~~~~~vd 84 (108)
T PF14581_consen 5 GEKVLLGEPEEEPTDLLAALSEYFKQHKNVRAAYLALMQDEDEQPSLLIGVDFDGEDIEEIFQEIGRAARPYLPDGWPVD 84 (108)
T ss_pred CCEEEecCCccCHHHHHHHHHHHHhhCccHHHhHHHHhhccCCCceEEEEEeccChhHHHHHHHHHHHhhhcCCCCceEE
Confidence 44566664322222 467888999999987766554433 33333334456665 2333333333333333 335665
Q ss_pred EEecc
Q 029300 89 VQFAK 93 (195)
Q Consensus 89 v~~a~ 93 (195)
+....
T Consensus 85 ~~~~~ 89 (108)
T PF14581_consen 85 FVLLD 89 (108)
T ss_pred EEEcc
Confidence 55443
No 241
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=36.54 E-value=47 Score=21.54 Aligned_cols=47 Identities=15% Similarity=0.098 Sum_probs=24.6
Q ss_pred EEEEeCCCCCCCHHHHHHHhhc-CCceeEEEeccCCCCCCcccEEEEEEcc
Q 029300 17 SLLVLNITFRTTADDLFPLFEK-YGKVVDVFIPRDRRTGDSRGFAFVRYKY 66 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~-~G~i~~v~~~~~~~~g~~~g~afV~f~~ 66 (195)
-|||++++..+-+.-...+-+. .++ -.+.+... +....||+|-++-.
T Consensus 27 GVyVg~~s~rVRe~lW~~v~~~~~~~-G~avm~~~--~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 27 GVYVGGVSASVRERIWDYLAQHCPPK-GSLVITWS--SNTCPGFEFFTLGE 74 (87)
T ss_pred CcEEcCCCHHHHHHHHHHHHHhCCCC-ccEEEEEe--CCCCCCcEEEecCC
Confidence 4999999887765433333333 222 22333332 22344788876653
No 242
>PRK10905 cell division protein DamX; Validated
Probab=36.41 E-value=74 Score=25.93 Aligned_cols=61 Identities=21% Similarity=0.287 Sum_probs=36.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEE--EEEccHHHHHHHHHhhCC
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAF--VRYKYADEAQKAVDRLDG 79 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~af--V~f~~~~~a~~a~~~l~g 79 (195)
..++|.|+.+. +++.|..|..++|. ....+.....+|.. .|.. =.|.+.++|+.|+..|-.
T Consensus 246 ~~YTLQL~A~S---s~~~l~~fakKlgL-~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 246 SHYTLQLSSSS---NYDNLNGWAKKENL-KNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred CceEEEEEecC---CHHHHHHHHHHcCC-CceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCCH
Confidence 34677777655 45777777777753 22222222223332 3433 368899999999998754
No 243
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=36.37 E-value=1.2e+02 Score=26.84 Aligned_cols=50 Identities=14% Similarity=0.166 Sum_probs=34.4
Q ss_pred CCHHHHHHHh----hcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhh
Q 029300 27 TTADDLFPLF----EKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (195)
Q Consensus 27 ~~~~~l~~~f----~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l 77 (195)
.+.-+|..+| ..+|-|+++.|...+.. .....+++.|.+.++|..|+..+
T Consensus 278 ~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P-~~~~~~~~~f~~~~~a~~av~~i 331 (555)
T PLN02805 278 AAGYDLTRLVIGSEGTLGVITEVTLRLQKIP-QHSVVAMCNFPTIKDAADVAIAT 331 (555)
T ss_pred CCCccHHHHhccCCCceEEEEEEEEEeecCC-cceEEEEEEcCCHHHHHHHHHHH
Confidence 3445787776 24778888887654422 23457888999999988887654
No 244
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=35.92 E-value=63 Score=21.42 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=26.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEcc
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY 66 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~ 66 (195)
-|||++++..+-+.-...+-+.++. -.+.++.. +....||+|-++-.
T Consensus 29 GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~--~~~eqG~~~~t~G~ 75 (97)
T PRK11558 29 GVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWA--TNTESGFEFQTFGE 75 (97)
T ss_pred CcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEc--CCCCCCcEEEecCC
Confidence 4999998887765544444444433 22333332 22334899887764
No 245
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=35.82 E-value=1.4e+02 Score=26.62 Aligned_cols=64 Identities=14% Similarity=0.239 Sum_probs=36.2
Q ss_pred CHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhC--Cce-----e-cCcEEEEEecccCCCc
Q 029300 28 TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD--GRV-----V-DGREITVQFAKYGPNA 98 (195)
Q Consensus 28 ~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~--g~~-----~-~g~~l~v~~a~~~~~~ 98 (195)
-.++|.+.|..-+.|..|.+... ||-++.+....-+...+..+. +.. + .|++|.|+|..+.|..
T Consensus 59 iA~~i~~~l~~~~~~~~veiaGp-------gfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNptk 130 (577)
T COG0018 59 IAEEIAEKLDTDEIIEKVEIAGP-------GFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPTG 130 (577)
T ss_pred HHHHHHHhccccCcEeEEEEcCC-------CEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCCC
Confidence 34556666666556777877533 444444444333333333333 222 2 5789999999877654
No 246
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=34.41 E-value=1.2e+02 Score=19.55 Aligned_cols=66 Identities=26% Similarity=0.274 Sum_probs=25.4
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEcc----HHHHHHHHHhhCCceecCcEEEEE
Q 029300 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 18 l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~----~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
|-+++|.+.-. .+++-.+++-..|-.+.|. |.. ..|||.|.. .+....+++.|....+.-+.|.|+
T Consensus 3 lkfg~It~eeA-~~~QYeLsk~~~vyRvFiN-----gYa-r~g~VifDe~kl~~e~lL~~le~~kpEVi~ek~lTve 72 (88)
T PF11491_consen 3 LKFGNITPEEA-MVKQYELSKNEAVYRVFIN-----GYA-RNGFVIFDESKLSKEELLEMLEEFKPEVIEEKELTVE 72 (88)
T ss_dssp EE--S-TTTTT-HHHHHTTTTTTTB-----------TTS-S--EEE--B-S-SHHHH---HHHTTT-SS-------S
T ss_pred cccCCCCHHHH-HHHHHHhhcccceeeeeec-----ccc-cceEEEECcccCCHHHHHHHHHhcChhheeeccccHH
Confidence 45577765432 2344445666677666652 222 358999974 477778888888887777777664
No 247
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=34.32 E-value=89 Score=21.77 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=23.9
Q ss_pred EEEEEcc--------HHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 60 AFVRYKY--------ADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 60 afV~f~~--------~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
|||+|++ .+-|...++.+|...--|..+.|.+-.
T Consensus 21 AFV~l~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~ 62 (129)
T COG1098 21 AFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLD 62 (129)
T ss_pred eEEEecCCCcceEEehHhhhhhHHhHHHHhcCCCEEEEEEEe
Confidence 7888876 356777777777776677777776543
No 248
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=34.02 E-value=1.9e+02 Score=21.29 Aligned_cols=74 Identities=9% Similarity=0.111 Sum_probs=38.4
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccE-EEEEEccHHHHHHH---HHhhCCceecCcEEEEEec
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGF-AFVRYKYADEAQKA---VDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~-afV~f~~~~~a~~a---~~~l~g~~~~g~~l~v~~a 92 (195)
.|.|.-=|..++-++|.++|-..-....+.-.. ......| .-|-|.+.++.+.| +..++.....+.+|.+++.
T Consensus 56 ~V~V~yDp~~isy~~Ll~~f~~~hDPt~~~~Qg---~D~G~qYRS~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~Tei~ 132 (172)
T PRK14054 56 AVEITYDPAVISYRELLELFFQIHDPTTLNRQG---NDRGTQYRSAIFYHDEEQKEIAEASIAELQASGLFDKPIVTEVE 132 (172)
T ss_pred EEEEEECCCcCCHHHHHHHHHHhCCCCccCCCC---CCCCcCceeEEEeCCHHHHHHHHHHHHHHHHhcccCCCcEEEEe
Confidence 477777788899999998886542222221100 0011233 34555565554444 4444433223556666654
Q ss_pred c
Q 029300 93 K 93 (195)
Q Consensus 93 ~ 93 (195)
.
T Consensus 133 ~ 133 (172)
T PRK14054 133 P 133 (172)
T ss_pred c
Confidence 3
No 249
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=33.92 E-value=53 Score=23.63 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=18.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhc
Q 029300 16 YSLLVLNITFRTTADDLFPLFEK 38 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~ 38 (195)
..+.|+|+|+.++.+.|..++..
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~ 100 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEE 100 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhc
Confidence 45789999999988888888764
No 250
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=33.78 E-value=1.4e+02 Score=21.74 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=24.3
Q ss_pred EEEEeCCCCCCCHHHHHHHhhc-CC-ceeEEEecc
Q 029300 17 SLLVLNITFRTTADDLFPLFEK-YG-KVVDVFIPR 49 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~-~G-~i~~v~~~~ 49 (195)
..|+..++..++-.+|...|+. || .|..|..+.
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~ 57 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFN 57 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEe
Confidence 3577778899999999999876 66 566665443
No 251
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=33.32 E-value=1.2e+02 Score=21.38 Aligned_cols=46 Identities=15% Similarity=0.335 Sum_probs=23.8
Q ss_pred CCCHHHHHHHhh-cCC-c-eeEEE---eccCCCCCCcccEEEEEEccHHHHHH
Q 029300 26 RTTADDLFPLFE-KYG-K-VVDVF---IPRDRRTGDSRGFAFVRYKYADEAQK 72 (195)
Q Consensus 26 ~~~~~~l~~~f~-~~G-~-i~~v~---~~~~~~~g~~~g~afV~f~~~~~a~~ 72 (195)
..+..+|.+.+. .|+ . ...|. |......|.+.|||.| |.+.+.|..
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 467788877664 455 2 12222 2222234555666665 566555444
No 252
>CHL00030 rpl23 ribosomal protein L23
Probab=32.97 E-value=1.4e+02 Score=19.51 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=23.1
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-CC-ceeEEEecc
Q 029300 18 LLVLNITFRTTADDLFPLFEK-YG-KVVDVFIPR 49 (195)
Q Consensus 18 l~V~nLp~~~~~~~l~~~f~~-~G-~i~~v~~~~ 49 (195)
.|+--++..++..+|++.++. || .|..|..+.
T Consensus 21 ~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~ 54 (93)
T CHL00030 21 QYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHR 54 (93)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEE
Confidence 556667889999999998876 66 566665443
No 253
>COG5584 Predicted small secreted protein [Function unknown]
Probab=32.96 E-value=85 Score=20.77 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=22.0
Q ss_pred CCCCCCCHHHHHHHhhcCCceeEEEeccCC
Q 029300 22 NITFRTTADDLFPLFEKYGKVVDVFIPRDR 51 (195)
Q Consensus 22 nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~ 51 (195)
|+.....-.-+++.|.++|+|..-.|...+
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~~~p 58 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIVYEP 58 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEEEec
Confidence 455555566788999999999877666554
No 254
>PHA01632 hypothetical protein
Probab=32.81 E-value=45 Score=19.57 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=16.3
Q ss_pred EEEeCCCCCCCHHHHHHHhhc
Q 029300 18 LLVLNITFRTTADDLFPLFEK 38 (195)
Q Consensus 18 l~V~nLp~~~~~~~l~~~f~~ 38 (195)
|.|..+|..-|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 335688999999999877654
No 255
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=32.60 E-value=95 Score=22.70 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=25.1
Q ss_pred CCCcEEEEeCCCCC---CCHHHHHHHhhcCCceeEEE
Q 029300 13 RDTYSLLVLNITFR---TTADDLFPLFEKYGKVVDVF 46 (195)
Q Consensus 13 ~~~~~l~V~nLp~~---~~~~~l~~~f~~~G~i~~v~ 46 (195)
..+++|||++|.-. +-...|..++-+-|.+..+.
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~L 65 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYIL 65 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEe
Confidence 45799999999854 44567888877778776653
No 256
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=32.53 E-value=1e+02 Score=19.89 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=33.4
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEc--cHHHHHHHHHhhCCc
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK--YADEAQKAVDRLDGR 80 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~--~~~~a~~a~~~l~g~ 80 (195)
.+|.-.+|... -.|+.|+...+....|....-..++...+.+||-|. +.++.+..++.|+..
T Consensus 11 ~~~~v~~PE~p--Gal~~F~~~l~~~~nITeF~YR~~~~~~a~vlvgi~v~~~~~~~~l~~~L~~~ 74 (91)
T PF00585_consen 11 ALFAVEFPERP--GALKRFLDALGPRNNITEFHYRYSGDDFARVLVGIEVPDAEDLEELIERLKAL 74 (91)
T ss_dssp EEEEEE--BST--THCHHHHHCCSSSE-EEEEEEE-TTTSCSEEEEEEE-SSTHHHHHHHHHHTSS
T ss_pred EEEEEECCCCc--cHHHHHHHHhCCCceEEEEEEcCCCCCeeeEEEEEEeCCHHHHHHHHHHHHHc
Confidence 45666677643 356777777765444433332335556788887776 344545566666543
No 257
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=32.46 E-value=66 Score=21.55 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=24.2
Q ss_pred cCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 38 KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 38 ~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
+-|.+.+|.....+ .|+|+.|++--. -...+.|..+++.+.
T Consensus 28 ~NGtv~qI~~Y~~p------NYvf~~FEnG~t--------vsv~~~gs~~kI~~~ 68 (121)
T PF06919_consen 28 KNGTVAQIEQYMTP------NYVFMRFENGIT--------VSVTYNGSIFKIGLD 68 (121)
T ss_pred CCCcEEEEeeecCC------CEEEEEecCCCE--------EEEEecCcEEEEEec
Confidence 34677777665544 799999985211 011345666666654
No 258
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=32.28 E-value=3.8e+02 Score=24.24 Aligned_cols=7 Identities=14% Similarity=0.387 Sum_probs=3.3
Q ss_pred cEEEEeC
Q 029300 16 YSLLVLN 22 (195)
Q Consensus 16 ~~l~V~n 22 (195)
+.|.|..
T Consensus 40 tSiViSD 46 (1027)
T KOG3580|consen 40 TSIVISD 46 (1027)
T ss_pred eeEEEee
Confidence 3455554
No 259
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=32.04 E-value=1.8e+02 Score=20.36 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=20.8
Q ss_pred cccEEEEEEccHHHHHHHHHhhCCc
Q 029300 56 SRGFAFVRYKYADEAQKAVDRLDGR 80 (195)
Q Consensus 56 ~~g~afV~f~~~~~a~~a~~~l~g~ 80 (195)
..||.||++....+...++..+.|.
T Consensus 37 fpGYvFV~~~~~~~~~~~i~~~~gv 61 (145)
T TIGR00405 37 LKGYILVEAETKIDMRNPIIGVPHV 61 (145)
T ss_pred CCcEEEEEEECcHHHHHHHhCCCCE
Confidence 5699999999888888888877765
No 260
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=31.88 E-value=79 Score=20.28 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=26.4
Q ss_pred ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCcee--cCcEEEEEec
Q 029300 41 KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV--DGREITVQFA 92 (195)
Q Consensus 41 ~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a 92 (195)
+|.+|.|..-...+..++||=|+|.+. -.+++..+ +..-|.|.+.
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd~-------f~I~~ikVieg~~GlFVaMP 48 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDDC-------FVIHDIKVIEGEKGLFVAMP 48 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETTT-------EEEEEEEEEEETTEEEEE--
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECCE-------EEEEeEEEEECCCCcEEECC
Confidence 366777665554588899999999871 12455544 2334666554
No 261
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=31.82 E-value=1.5e+02 Score=19.86 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=29.2
Q ss_pred HHHHHhhcCCceeEEEecc-----CCC----------CCCcccEEEEEEccHHHHHHHHHhh
Q 029300 31 DLFPLFEKYGKVVDVFIPR-----DRR----------TGDSRGFAFVRYKYADEAQKAVDRL 77 (195)
Q Consensus 31 ~l~~~f~~~G~i~~v~~~~-----~~~----------~g~~~g~afV~f~~~~~a~~a~~~l 77 (195)
....+|..||.+..+.... .+. .+..--|.+|+|.+.+...++..++
T Consensus 24 ~a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~ 85 (103)
T PF07237_consen 24 KAAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKM 85 (103)
T ss_dssp HHHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 3467899999765443221 111 1233467899999998888877654
No 262
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=31.76 E-value=5.9 Score=24.06 Aligned_cols=61 Identities=20% Similarity=0.249 Sum_probs=31.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeE-EEeccCCCCCCcccEEEEEEccHHHHHHHHHhhC
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVD-VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~-v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 78 (195)
.+.|.|+.+...-..+.+...+...|.-.. +.+... +..-...+-.|.+.++|+.++..|.
T Consensus 4 ~y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~---~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 4 GYYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKG---GPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEE---TTCEEEEECCECTCCHHHHHHHHHH
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecC---CceEEEEECCCCCHHHHHHHHHHHh
Confidence 456788876655444445444544453322 222211 1111122336889999999988876
No 263
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=30.60 E-value=1.1e+02 Score=21.78 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=32.9
Q ss_pred CCCCCCCCCCCCC-CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEec
Q 029300 2 SHFGKSGPPDIRD-TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIP 48 (195)
Q Consensus 2 ~~~~~~~p~~~~~-~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~ 48 (195)
..|.++.|..+.- +-...|+.-|.++|-+...+.+.+||.-.-|.+.
T Consensus 2 a~mnrPAPveIsy~~MrFLIThnPtnaTln~fieELkKygvttvVRVC 49 (173)
T KOG2836|consen 2 ARMNRPAPVEISYKNMRFLITHNPTNATLNKFIEELKKYGVTTVVRVC 49 (173)
T ss_pred CcccCCCCeeeeccceEEEEecCCCchhHHHHHHHHHhcCCeEEEEec
Confidence 4455566655432 3356678889999999999999999975555554
No 264
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=30.34 E-value=1.4e+02 Score=26.05 Aligned_cols=49 Identities=20% Similarity=0.172 Sum_probs=30.5
Q ss_pred CCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCc
Q 029300 27 TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (195)
Q Consensus 27 ~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~ 80 (195)
+-+++|..-|..+-.-.++.-+. | ..|++=+.|.++++|++.++.+...
T Consensus 90 iWdqELY~nf~y~q~r~ffhtFe----g-ddc~aGLnF~~E~EA~~F~k~V~~r 138 (569)
T KOG3671|consen 90 IWDQELYQNFEYRQPRTFFHTFE----G-DDCQAGLNFASEEEAQKFRKKVQDR 138 (569)
T ss_pred eehHHhhhhceeccCccceeeec----c-ccceeeecccCHHHHHHHHHHHHHH
Confidence 55677777776554332322211 1 1257778899999999988866544
No 265
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=30.21 E-value=87 Score=25.71 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=32.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEE
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRY 64 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f 64 (195)
..+.||++|-.+.--++|...+.++| .+..|....+ ...++++|..
T Consensus 61 ~~~afiGkvGdD~fG~~l~~~L~~~~V~~~~v~~~~~----~~T~~a~i~v 107 (330)
T KOG2855|consen 61 GRVAFIGKVGDDEFGDDLLDILKQNGVDTSGVKFDEN----ARTACATITV 107 (330)
T ss_pred cceeeeecccchhhHHHHHHHHhhCCcccccceecCC----CceEEEEEEE
Confidence 56899999999999999999999976 3344444333 3345665544
No 266
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=30.18 E-value=1.7e+02 Score=19.62 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=25.5
Q ss_pred HHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHH
Q 029300 30 DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (195)
Q Consensus 30 ~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~ 75 (195)
.+|..++...|.- +-.|..+..+ +.-||++++.+.+...++|.
T Consensus 27 PE~~a~lk~agi~-nYSIfLde~~--n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAGIR-NYSIFLDEEE--NLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcCCc-eeEEEecCCc--ccEEEEEEEcChHHHHHHHh
Confidence 4678888888744 3333333222 33689999996555554443
No 267
>PF15063 TC1: Thyroid cancer protein 1
Probab=29.72 E-value=32 Score=21.57 Aligned_cols=26 Identities=31% Similarity=0.276 Sum_probs=21.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCce
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKV 42 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i 42 (195)
+--+.||-.+++...|..+|..-|..
T Consensus 27 KkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 27 KKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhhhccCHHHHHHHHHHccch
Confidence 44567888899999999999999964
No 268
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=29.56 E-value=1.2e+02 Score=20.65 Aligned_cols=15 Identities=7% Similarity=0.126 Sum_probs=7.2
Q ss_pred CCCCCCHHHHHHHhh
Q 029300 23 ITFRTTADDLFPLFE 37 (195)
Q Consensus 23 Lp~~~~~~~l~~~f~ 37 (195)
+|.+++-.++..++.
T Consensus 47 Vp~~~tv~~f~~~ir 61 (112)
T cd01611 47 VPSDLTVGQFVYIIR 61 (112)
T ss_pred ecCCCCHHHHHHHHH
Confidence 445555555444443
No 269
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=29.47 E-value=95 Score=16.85 Aligned_cols=31 Identities=10% Similarity=0.244 Sum_probs=22.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEe
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFI 47 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~ 47 (195)
+.|..-++.-.++.++|.+++....+ ..+.+
T Consensus 7 a~v~~~~fSgHad~~~L~~~i~~~~p-~~vil 37 (43)
T PF07521_consen 7 ARVEQIDFSGHADREELLEFIEQLNP-RKVIL 37 (43)
T ss_dssp SEEEESGCSSS-BHHHHHHHHHHHCS-SEEEE
T ss_pred EEEEEEeecCCCCHHHHHHHHHhcCC-CEEEE
Confidence 45666668889999999999988855 55444
No 270
>PF15440 THRAP3_BCLAF1: THRAP3/BCLAF1 family
Probab=29.18 E-value=73 Score=28.78 Aligned_cols=7 Identities=100% Similarity=1.346 Sum_probs=3.6
Q ss_pred CCCCCCC
Q 029300 116 RSRSRSP 122 (195)
Q Consensus 116 r~r~rs~ 122 (195)
++|+|+|
T Consensus 2 RSRSRSP 8 (646)
T PF15440_consen 2 RSRSRSP 8 (646)
T ss_pred CccCCCc
Confidence 4455555
No 271
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=29.09 E-value=1.2e+02 Score=17.33 Aligned_cols=24 Identities=8% Similarity=0.182 Sum_probs=16.4
Q ss_pred CCCHHHHHHHhhcCC-ceeEEEecc
Q 029300 26 RTTADDLFPLFEKYG-KVVDVFIPR 49 (195)
Q Consensus 26 ~~~~~~l~~~f~~~G-~i~~v~~~~ 49 (195)
.-.-.+|..+|..+| .|..+.+..
T Consensus 10 ~g~l~~i~~~l~~~~~nI~~~~~~~ 34 (71)
T cd04879 10 PGVIGKVGTILGEHGINIAAMQVGR 34 (71)
T ss_pred CCHHHHHHHHHHhcCCCeeeEEEec
Confidence 334567888888876 677776644
No 272
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=28.61 E-value=1.6e+02 Score=18.62 Aligned_cols=56 Identities=9% Similarity=0.216 Sum_probs=31.7
Q ss_pred EEEeCCCCCCCHHHHHHHh-------hcCCceeEEEeccCCCCC---CcccEE-EEEEccHHHHHHH
Q 029300 18 LLVLNITFRTTADDLFPLF-------EKYGKVVDVFIPRDRRTG---DSRGFA-FVRYKYADEAQKA 73 (195)
Q Consensus 18 l~V~nLp~~~~~~~l~~~f-------~~~G~i~~v~~~~~~~~g---~~~g~a-fV~f~~~~~a~~a 73 (195)
|.+-.|...++++++.+++ .....|..+.+-.+-... ..-.+| +++|.+.++.+.-
T Consensus 4 ivlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y 70 (97)
T PF07876_consen 4 IVLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAY 70 (97)
T ss_dssp EEEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHH
Confidence 4455677888888775443 344556676654443222 122334 4688888776553
No 273
>smart00457 MACPF membrane-attack complex / perforin.
Probab=28.54 E-value=74 Score=23.58 Aligned_cols=28 Identities=11% Similarity=0.287 Sum_probs=21.9
Q ss_pred EeCCCCCCCHHHHHHHhhcCCc--eeEEEe
Q 029300 20 VLNITFRTTADDLFPLFEKYGK--VVDVFI 47 (195)
Q Consensus 20 V~nLp~~~~~~~l~~~f~~~G~--i~~v~~ 47 (195)
|.+||...+..++..||..||. |..+.+
T Consensus 30 l~~Lp~~~~~~~~~~fi~~yGTH~i~s~~~ 59 (194)
T smart00457 30 LRDLPDQYNRGAYARFIDKYGTHYITSATL 59 (194)
T ss_pred HHhCccccCHHHHHHHHHHhCCeEEEeeee
Confidence 4578888888999999999996 444444
No 274
>PF14268 YoaP: YoaP-like
Probab=28.47 E-value=53 Score=18.31 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=24.1
Q ss_pred EEEEEccHHHHHHHHHhhCCc--eecCcEEEEEec
Q 029300 60 AFVRYKYADEAQKAVDRLDGR--VVDGREITVQFA 92 (195)
Q Consensus 60 afV~f~~~~~a~~a~~~l~g~--~~~g~~l~v~~a 92 (195)
-+|.+++.+.|+.|-.-++.. .++|.-|.+++-
T Consensus 3 ~~i~i~t~e~Aq~~P~pft~yalFYnGkfiT~eil 37 (44)
T PF14268_consen 3 KLIKIDTLEKAQNAPCPFTTYALFYNGKFITNEIL 37 (44)
T ss_pred EEEEeccHHHHhcCCCceeEEEEEECCEEEEeecc
Confidence 468888999998886656555 347888877764
No 275
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=28.33 E-value=61 Score=20.37 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=22.6
Q ss_pred ccEEEEEEccHHHHHHHHHhhCCc-eecCcEEEEE
Q 029300 57 RGFAFVRYKYADEAQKAVDRLDGR-VVDGREITVQ 90 (195)
Q Consensus 57 ~g~afV~f~~~~~a~~a~~~l~g~-~~~g~~l~v~ 90 (195)
.|.|.|...+.+.|+.....|... ...|.+|.+.
T Consensus 47 ~G~avv~~~~~e~ae~~~~~l~~~g~~~~~PL~~t 81 (82)
T PF02617_consen 47 EGRAVVGTGSREEAEEYAEKLQRAGRDSGHPLRAT 81 (82)
T ss_dssp HSEEEEEEEEHHHHHHHHHHHHHHHHHTT---EEE
T ss_pred cCCEeeeeCCHHHHHHHHHHHHHHhhccCCCeEEe
Confidence 378999888999998877765433 4567777765
No 276
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=28.14 E-value=1.5e+02 Score=18.09 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=28.3
Q ss_pred CHHHHHHHhhcCC-ceeEEEeccCCCCCCc-ccEEEEEEc-cHHHHHHHHHhhCC
Q 029300 28 TADDLFPLFEKYG-KVVDVFIPRDRRTGDS-RGFAFVRYK-YADEAQKAVDRLDG 79 (195)
Q Consensus 28 ~~~~l~~~f~~~G-~i~~v~~~~~~~~g~~-~g~afV~f~-~~~~a~~a~~~l~g 79 (195)
.-.++...|..+| .+..|.--. ..+.. .-+-||+|+ ..+..++|++.|..
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeSRP--~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIESRP--SRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEECCC--CCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 3566778888886 455554322 22222 223567777 45556777777654
No 277
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.14 E-value=1.2e+02 Score=17.23 Aligned_cols=49 Identities=8% Similarity=0.264 Sum_probs=26.5
Q ss_pred HHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCce
Q 029300 30 DDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV 81 (195)
Q Consensus 30 ~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~ 81 (195)
.+|..+|.++| .|..+...... ........+..++.+.+..+++. +|..
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~--~~~~~~v~~~ve~~~~~~~~L~~-~G~~ 63 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEK--KGGKALLIFRTEDIEKAIEVLQE-RGVE 63 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccC--CCCeEEEEEEeCCHHHHHHHHHH-CCce
Confidence 46667777776 56655543221 11223445555676666666664 4443
No 278
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=28.07 E-value=31 Score=27.18 Aligned_cols=74 Identities=20% Similarity=0.261 Sum_probs=49.7
Q ss_pred cEEEEeCCCCCCCHHH-H--HHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 16 YSLLVLNITFRTTADD-L--FPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~-l--~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
+.++++++-..+..+- | ...|..|-.+....++... .+...+++|+.|........+...-++..+.-.+|++.
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a 173 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLA 173 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeec
Confidence 4566666665555544 3 5667777666666665553 55667899999998888777777667777766655443
No 279
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=28.06 E-value=1.3e+02 Score=19.90 Aligned_cols=19 Identities=5% Similarity=0.137 Sum_probs=15.1
Q ss_pred cccEEEEEEccHHHHHHHH
Q 029300 56 SRGFAFVRYKYADEAQKAV 74 (195)
Q Consensus 56 ~~g~afV~f~~~~~a~~a~ 74 (195)
+.....|+|.+.+.|..+.
T Consensus 52 ptr~vviEFps~~~ar~~y 70 (96)
T COG5470 52 PTRNVVIEFPSLEAARDCY 70 (96)
T ss_pred cccEEEEEcCCHHHHHHHh
Confidence 3467999999999887764
No 280
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=27.79 E-value=1.3e+02 Score=17.19 Aligned_cols=47 Identities=15% Similarity=0.306 Sum_probs=25.3
Q ss_pred CHHHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEc-cHHHHHHHHHhh
Q 029300 28 TADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYK-YADEAQKAVDRL 77 (195)
Q Consensus 28 ~~~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~-~~~~a~~a~~~l 77 (195)
.-.+|..+|...| .|..+........ ..++++.+. +...++.+++.|
T Consensus 13 ~l~~v~~~la~~~inI~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l 61 (66)
T PF01842_consen 13 ILADVTEILADHGINIDSISQSSDKDG---VGIVFIVIVVDEEDLEKLLEEL 61 (66)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEEESST---TEEEEEEEEEEGHGHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHeEEEecCCC---ceEEEEEEECCCCCHHHHHHHH
Confidence 3467788888877 6666666554321 234444443 444444444433
No 281
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=27.76 E-value=1.9e+02 Score=19.17 Aligned_cols=60 Identities=15% Similarity=0.136 Sum_probs=40.0
Q ss_pred CCcEEEEeCCCCCCC---HHHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCce
Q 029300 14 DTYSLLVLNITFRTT---ADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV 81 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~---~~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~ 81 (195)
+...|.|......+. ...|...+..-| .++.+.... +...|.|.+.++-..|.+.|....
T Consensus 30 e~pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i~~~~--------~~llirf~~~~~Ql~Ak~~L~~~L 93 (101)
T PF13721_consen 30 EDPAVQISASSAGVQLPDAFQVEQALKAAGIAVKSIEQEG--------DSLLIRFDSTDQQLKAKDVLSKAL 93 (101)
T ss_pred CCCcEEEecCCCCccCChHHHHHHHHHHCCCCcceEEeeC--------CEEEEEECCHHHHHHHHHHHHHHc
Confidence 445688887543322 357888888777 455565432 458899999998888877665443
No 282
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=27.63 E-value=3.6e+02 Score=24.08 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=25.4
Q ss_pred cEEEEEEccHHHHHHHHHhhCCce-e-cCcEEEEEecccC
Q 029300 58 GFAFVRYKYADEAQKAVDRLDGRV-V-DGREITVQFAKYG 95 (195)
Q Consensus 58 g~afV~f~~~~~a~~a~~~l~g~~-~-~g~~l~v~~a~~~ 95 (195)
|-| +.|+++++|.+|+. ++.. | .|..|.|.+.-++
T Consensus 402 G~A-~VF~see~a~~ai~--~g~i~i~~gdVvVIRyeGPk 438 (571)
T PRK06131 402 GRA-VVFEGYEDYKARID--DPDLDVDEDTVLVLRNAGPK 438 (571)
T ss_pred eee-EEECCHHHHHHHHh--CCCcCCCCCeEEEEeCCCCC
Confidence 444 56999999999987 4553 2 7888888886543
No 283
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=27.44 E-value=2.3e+02 Score=21.00 Aligned_cols=61 Identities=10% Similarity=0.022 Sum_probs=37.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEe-ccCCCCCCcccE-EEEEEccHHHHHHHHHhhCCc
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFI-PRDRRTGDSRGF-AFVRYKYADEAQKAVDRLDGR 80 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~-~~~~~~g~~~g~-afV~f~~~~~a~~a~~~l~g~ 80 (195)
-.|-|.-=|..++.++|.++|...-....+.- -.+. | ..| .-|.|.+.++++.|.+.++..
T Consensus 76 EvvrV~ydpk~~sy~~Lld~Fw~~HdPtt~n~QG~D~--G--tQYRS~I~~~s~eq~k~A~~s~e~~ 138 (191)
T KOG1635|consen 76 EVVRVQYDPKVISYEELLDFFWSRHDPTTLNRQGNDV--G--TQYRSGIYTYSPEQEKLARESKERE 138 (191)
T ss_pred eEEEEEeCcccccHHHHHHHHHHcCCchhhhccCCcc--c--ceeeeeeeeCCHHHHHHHHHHHHHH
Confidence 35778888999999999999976543333211 1111 1 122 235667777777777665544
No 284
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=27.17 E-value=1.7e+02 Score=22.04 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=33.8
Q ss_pred CCHHHHHHHhhcCCc---eeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceec
Q 029300 27 TTADDLFPLFEKYGK---VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD 83 (195)
Q Consensus 27 ~~~~~l~~~f~~~G~---i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 83 (195)
.+.+++.+....+|. |....+.. .|..++-+...-.+.++|..+...|-|..|.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~---GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLA---GGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSS---STTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEee---cCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 456777777766653 45555543 2333443333345789999999988888876
No 285
>PRK12450 foldase protein PrsA; Reviewed
Probab=27.15 E-value=1.2e+02 Score=24.48 Aligned_cols=39 Identities=10% Similarity=0.320 Sum_probs=29.3
Q ss_pred CCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhC
Q 029300 26 RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (195)
Q Consensus 26 ~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 78 (195)
.+|+++|+.+|..|.+ .+. ...|.+.+.+.|+.++..|.
T Consensus 132 ~Vtd~evk~~y~~~~~--~~~------------~~~I~~~~~~~A~~i~~~l~ 170 (309)
T PRK12450 132 TISKKDYRQAYDAYTP--TMT------------AEIMQFEKEEDAKAALEAVK 170 (309)
T ss_pred CCCHHHHHHHHHHhCc--cce------------eEEEEeCCHHHHHHHHHHHH
Confidence 4799999999987732 111 24577889999999999885
No 286
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=27.13 E-value=81 Score=26.58 Aligned_cols=52 Identities=29% Similarity=0.279 Sum_probs=36.0
Q ss_pred CCCCCCCHHHHHHHhh----cCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHH
Q 029300 22 NITFRTTADDLFPLFE----KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAV 74 (195)
Q Consensus 22 nLp~~~~~~~l~~~f~----~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~ 74 (195)
+|-.+-|--+|+.+|- ..|.|+.+.|...+ .-+....||+-.++.+++++++
T Consensus 231 slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~-kpksvn~af~gi~sf~~v~k~f 286 (511)
T KOG1232|consen 231 SLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPP-KPKSVNVAFIGIESFDDVQKVF 286 (511)
T ss_pred hhcccCccccchhheecCCceeeEEeeEEEeecC-CCcceeEEEEccccHHHHHHHH
Confidence 4455667778899883 45778888877654 3344567898888888777654
No 287
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=27.00 E-value=1.9e+02 Score=19.10 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=34.2
Q ss_pred CCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCc
Q 029300 26 RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (195)
Q Consensus 26 ~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~ 80 (195)
.-++++|.-+...-|.|.+|.+... .-| .=.|.+...+..+++.+|+.|+..
T Consensus 8 ~~~~~EL~~IVd~Gg~V~DV~veHp-~YG--~i~~~L~i~sr~Dv~~Fi~~l~~~ 59 (98)
T PF02829_consen 8 DEIEDELEIIVDNGGRVLDVIVEHP-VYG--EITGNLNISSRRDVDKFIEKLEKS 59 (98)
T ss_dssp GGHHHHHHHHHHTT-EEEEEEEEET-TTE--EEEEEEEE-SHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCC-CCc--EEEEEEecCCHHHHHHHHHHHhcc
Confidence 3456677777776678888877543 222 234677888999999999877643
No 288
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=26.91 E-value=1.8e+02 Score=18.60 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHhh-cCCc----eeEEEeccCCCCCCcccEEEEEEccHHHHHH
Q 029300 25 FRTTADDLFPLFE-KYGK----VVDVFIPRDRRTGDSRGFAFVRYKYADEAQK 72 (195)
Q Consensus 25 ~~~~~~~l~~~f~-~~G~----i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~ 72 (195)
...+..+|++.+. .|+. |.-..|......+...|||.| |.+.+.++.
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 3456677776664 3442 222233344334555666665 666666554
No 289
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=26.51 E-value=1.7e+02 Score=22.37 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=26.9
Q ss_pred cEEEEeCCCCCCCHHH--------HHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccH
Q 029300 16 YSLLVLNITFRTTADD--------LFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYA 67 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~--------l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~ 67 (195)
..=||-.||.+++.++ +.++|..+|.+..+.|..+.. ..-.|.|.|.+.
T Consensus 68 are~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~aIH~d~~---~NpHaHim~t~R 124 (216)
T PF03389_consen 68 AREFEIALPRELTLEQNIELVREFAQENFVDYGMAADVAIHDDGP---RNPHAHIMFTTR 124 (216)
T ss_dssp EEEEEEE--TTS-HHHHHHHHHHHHHHHHTTTT--EEEEEEEETT---TEEEEEEEE--B
T ss_pred eeeeeeeCCccCCHHHHHHHHHHHHHHHhhccceEEEEEEecCCC---CCCEEEEEeecC
Confidence 4557788999988765 445566778888888875321 224677777643
No 290
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=26.47 E-value=81 Score=29.12 Aligned_cols=35 Identities=26% Similarity=0.207 Sum_probs=24.2
Q ss_pred ccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 57 RGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 57 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
.+.|||+|++...|+.|.+..-+..+.+.. +|..|
T Consensus 357 ~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~-~v~ia 391 (827)
T COG5594 357 TKSGFITFKSQASAQIAAQSQIYSRVLGKL-KVEIA 391 (827)
T ss_pred cccEEEEEehhHHHHHHHHhhhhhhhhcce-eeeec
Confidence 468999999999999998865344333332 44444
No 291
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=26.45 E-value=1.3e+02 Score=24.83 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=31.5
Q ss_pred CcEEEEeCCC----CCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHH
Q 029300 15 TYSLLVLNIT----FRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (195)
Q Consensus 15 ~~~l~V~nLp----~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~ 75 (195)
...|||+|=. ..++.++|..+...... ..+ |+.| -||++|.. +++...+.
T Consensus 146 ~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~-~~~-vVvD--------EAY~eF~~-~~~~~l~~ 199 (356)
T COG0079 146 TKLVFLCNPNNPTGTLLPREELRALLEALPE-GGL-VVID--------EAYIEFSP-ESSLELLK 199 (356)
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcE-EEEe--------CchhhcCC-chhhhhcc
Confidence 5578888632 23678899999987755 223 3333 39999998 44444333
No 292
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=26.42 E-value=1.1e+02 Score=22.06 Aligned_cols=59 Identities=14% Similarity=0.082 Sum_probs=34.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHH
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKA 73 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a 73 (195)
..+||+|.-+..--+.--..+|+.|- +|..|.+..............+.+.+..+.+.+
T Consensus 87 ~l~iyFG~~~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~~l~~~e~~ 146 (153)
T PF14401_consen 87 ELSIYFGQTPDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLSELSEEEQD 146 (153)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEeeEeecChhhCCHHHHH
Confidence 45678887654444444577888875 778888876643233344455555544444433
No 293
>PLN02655 ent-kaurene oxidase
Probab=26.42 E-value=1.4e+02 Score=25.34 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=33.7
Q ss_pred EEeCCCCCC---CHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHh
Q 029300 19 LVLNITFRT---TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (195)
Q Consensus 19 ~V~nLp~~~---~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 76 (195)
+||||..-. ....+.+++.+||.|..+.+. +.-.|...+.+.++.++..
T Consensus 9 ~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~~pe~~k~il~~ 60 (466)
T PLN02655 9 VIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTG---------ASSVVVLNSTEVAKEAMVT 60 (466)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEEC---------CEeEEEeCCHHHHHHHHHh
Confidence 456654321 346788888999998777663 2356777888888888753
No 294
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=26.30 E-value=1.5e+02 Score=17.76 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=29.2
Q ss_pred CHHHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEcc---HHHHHHHHHhhCC
Q 029300 28 TADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKY---ADEAQKAVDRLDG 79 (195)
Q Consensus 28 ~~~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~---~~~a~~a~~~l~g 79 (195)
.-.+|.+.|..+| .|..|.-...+ .....-..||++.. ....+.+++.|..
T Consensus 12 ~L~~vL~~f~~~~vni~~I~Srp~~-~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 12 ALAKALKVFAERGINLTKIESRPSR-KGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecC-CCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3567788888886 56666333221 11222346778774 4556666666543
No 295
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=26.27 E-value=1e+02 Score=20.27 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=18.0
Q ss_pred ceeEEEeccCCCCCCcccEEEEEEcc
Q 029300 41 KVVDVFIPRDRRTGDSRGFAFVRYKY 66 (195)
Q Consensus 41 ~i~~v~~~~~~~~g~~~g~afV~f~~ 66 (195)
+|+.|.|..-...|..++||-|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 35666665443457788899998886
No 296
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=26.23 E-value=1.1e+02 Score=22.60 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=25.5
Q ss_pred CCcEEEEeCCCC--CC-CHHHHHHHhhcCCceeEEEecc
Q 029300 14 DTYSLLVLNITF--RT-TADDLFPLFEKYGKVVDVFIPR 49 (195)
Q Consensus 14 ~~~~l~V~nLp~--~~-~~~~l~~~f~~~G~i~~v~~~~ 49 (195)
.-..+||-+.+. +. ..+.|.+...+||.|..+.+..
T Consensus 20 ~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D 58 (195)
T PF01762_consen 20 RVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVD 58 (195)
T ss_pred cEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeeccc
Confidence 345788888887 32 2344778888999998877643
No 297
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=26.11 E-value=1.5e+02 Score=17.40 Aligned_cols=49 Identities=14% Similarity=0.206 Sum_probs=30.6
Q ss_pred CHHHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCce
Q 029300 28 TADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV 81 (195)
Q Consensus 28 ~~~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~ 81 (195)
.-.+|.++|.+.| .|..+.+.... . +++.-+.+.+.+.|.+++.. +|..
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTS---E-FGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecC---C-CCEEEEEECCHHHHHHHHHH-CCCE
Confidence 3467778887776 67777654321 1 35566667777777777764 4443
No 298
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=26.08 E-value=68 Score=22.82 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=16.7
Q ss_pred ccEEEEEEccHHHHHHHHHhhCC
Q 029300 57 RGFAFVRYKYADEAQKAVDRLDG 79 (195)
Q Consensus 57 ~g~afV~f~~~~~a~~a~~~l~g 79 (195)
-|..+|-|.+.++|++.+....|
T Consensus 114 Mg~~~~aF~~~~~A~~F~~~~GG 136 (149)
T PF05573_consen 114 MGPDLIAFASKEDAEAFAKEHGG 136 (149)
T ss_dssp TS--EEEES-HHHHHHHHHHTEE
T ss_pred CCCcccccCCHHHHHHHHHHcCC
Confidence 46789999999999999997533
No 299
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=25.93 E-value=2.4e+02 Score=23.00 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=22.7
Q ss_pred cEEEEeC--CCCCCCHHHHHHHhhc-CCceeEEEec
Q 029300 16 YSLLVLN--ITFRTTADDLFPLFEK-YGKVVDVFIP 48 (195)
Q Consensus 16 ~~l~V~n--Lp~~~~~~~l~~~f~~-~G~i~~v~~~ 48 (195)
.|||+.- |...++.++|.++|.. |+.-..|.+.
T Consensus 210 ~Ti~~~~~~~~~~~~~~~i~~~~~~~Y~~epfV~v~ 245 (313)
T PRK11863 210 VTVPLHLRLLPGGPTAEDLHAALADHYAGEAFVRVA 245 (313)
T ss_pred EEEEEEecccCCCCCHHHHHHHHHHHcCCCCeEEEe
Confidence 4677764 5777899999999864 5554455553
No 300
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=25.42 E-value=1.2e+02 Score=21.77 Aligned_cols=60 Identities=13% Similarity=0.191 Sum_probs=34.3
Q ss_pred cEEEEeCCCCC-CCHHHHHHHhhc-CCc-eeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCC
Q 029300 16 YSLLVLNITFR-TTADDLFPLFEK-YGK-VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (195)
Q Consensus 16 ~~l~V~nLp~~-~~~~~l~~~f~~-~G~-i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g 79 (195)
+.+|+++|... .+-++|+..+.. |+. +..+.+...+ .-+.+.|+|.-+.+|..-+..|-.
T Consensus 5 fla~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~~~~----~~~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 5 FLAYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVRKVE----PWNSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred EEEEECChhhhHHHHHHHHHHHHHHHhcccccceeeccc----cCceEEEEEechHHHHHHHHHHhh
Confidence 45778888711 233444444433 332 2333332222 225799999999998888776643
No 301
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=25.41 E-value=57 Score=19.69 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=10.7
Q ss_pred CHHHHHHHhhcCCceeEE
Q 029300 28 TADDLFPLFEKYGKVVDV 45 (195)
Q Consensus 28 ~~~~l~~~f~~~G~i~~v 45 (195)
|--||.+++.+||.+..+
T Consensus 3 tlyDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 3 TLYDVQQLLKKFGIIIYV 20 (62)
T ss_dssp SHHHHHHHHHTTS-----
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 445889999999976554
No 302
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=25.29 E-value=2.1e+02 Score=23.80 Aligned_cols=52 Identities=17% Similarity=0.085 Sum_probs=34.5
Q ss_pred CHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEE
Q 029300 28 TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (195)
Q Consensus 28 ~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 87 (195)
+.++|...|..---+..+....+ --||.|....+.++-|..++|..+.+.++
T Consensus 263 ~Y~~Le~HF~~~hy~ct~qtc~~--------~k~~vf~~~~el~~h~~~~h~~~~~~~~~ 314 (493)
T COG5236 263 SYEDLEAHFRNAHYCCTFQTCRV--------GKCYVFPYHTELLEHLTRFHKVNARLSEI 314 (493)
T ss_pred CHHHHHHHhhcCceEEEEEEEec--------CcEEEeccHHHHHHHHHHHhhcccccCcC
Confidence 45677777765443433333222 14788999988888888888888777654
No 303
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=24.99 E-value=1.3e+02 Score=26.68 Aligned_cols=41 Identities=15% Similarity=0.062 Sum_probs=30.7
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccC
Q 029300 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRD 50 (195)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~ 50 (195)
|+..++..||+.+|...+.++-=.+++...-.++++.|...
T Consensus 296 PEGl~~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~rp 336 (621)
T COG0445 296 PEGLDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILRP 336 (621)
T ss_pred CCCCCCceEecCcccccCCHHHHHHHHHhCcccccceeecc
Confidence 34455778999999988887766777777777777777654
No 304
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=24.62 E-value=17 Score=21.32 Aligned_cols=37 Identities=24% Similarity=0.479 Sum_probs=17.3
Q ss_pred cccEEEEEEcc-HHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 56 SRGFAFVRYKY-ADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 56 ~~g~afV~f~~-~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
.+|||||...+ .++.--+-..|++ -++|-.+.|.+..
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~-A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNG-AMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTT-S-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCC-CCCCCEEEEEEec
Confidence 44999999887 1111112223333 2345566666654
No 305
>PF06130 PduL: Propanediol utilisation protein PduL; InterPro: IPR008300 Salmonella enterica subsp. enterica serovar Typhimurium degrades 1,2-propanediol by a pathway that requires coenzyme B12, adenosylcobalamin (AdoCbl). Proteins required for 1,2-propanediol degradation are encoded by the pdu operon []. PduL functions in this pathway, but its exact role is not yet determined. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilization of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilization (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and coregulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR010254 from INTERPRO and IPR009204 from INTERPRO for more details on the propanediol utilization pathway and the pdu operon.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=24.55 E-value=1.8e+02 Score=17.98 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=26.0
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCceeEEEe
Q 029300 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFI 47 (195)
Q Consensus 18 l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~ 47 (195)
|.|.+=.-.++.+++..+|-+-|+...+.+
T Consensus 4 viva~RHIHms~~da~~l~~~dg~~v~ve~ 33 (71)
T PF06130_consen 4 VIVAARHIHMSPEDAEKLFGQDGQFVSVEV 33 (71)
T ss_pred EEEEccccCCCHHHHHHhCCCCCCEEEEEE
Confidence 667777888999999999999998887777
No 306
>PRK11633 cell division protein DedD; Provisional
Probab=24.46 E-value=2.5e+02 Score=21.68 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=45.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEE-EEccHHHHHHHHHhhCCc-eecCcEE
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFV-RYKYADEAQKAVDRLDGR-VVDGREI 87 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV-~f~~~~~a~~a~~~l~g~-~~~g~~l 87 (195)
..+.|.|+-|......+.|..-+..-|--.++.-... ..|.. --.|| =|.+.+.|+.++..|+.. -|.|..+
T Consensus 148 ~~~vVQlgaf~n~~~A~~l~~kL~~~G~~Ay~~~~~~-~~G~~-tRV~VGP~~sk~~ae~~~~~Lk~~~Gl~g~Vv 221 (226)
T PRK11633 148 KAYVVQLGALKNADKVNEIVAKLRLSGYRVYTVPSTP-VQGKI-TRIYVGPDASKDKLKGSLGELKQLSGLSGVVM 221 (226)
T ss_pred CcEEEEecccCCHHHHHHHHHHHHHCCCeeEEEeeec-CCCcE-EEEEeCCCCCHHHHHHHHHHHHHhcCCCceEE
Confidence 3578888888877778888888877775555433221 12211 11333 366899999999888773 5566443
No 307
>PF14893 PNMA: PNMA
Probab=23.45 E-value=69 Score=26.32 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=20.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhc
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEK 38 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~ 38 (195)
.-..|.|.+||.++++.+|++.+..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHH
Confidence 3456999999999999998887653
No 308
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=23.08 E-value=79 Score=21.03 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=25.3
Q ss_pred EEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 62 VRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 62 V~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
-.|.-.+.|.+.++.|....|.|+.|+|.-
T Consensus 17 ~~~qC~~cA~Al~~~L~~~gI~Gk~i~l~T 46 (100)
T PF15643_consen 17 KIFQCVECASALKQFLKQAGIPGKIIRLYT 46 (100)
T ss_pred CceehHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 357778888888899999999999998876
No 309
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=22.97 E-value=1.7e+02 Score=24.59 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=21.8
Q ss_pred EEEEeCCCCCCCHHHHHHHhhc-CCceeEEEec
Q 029300 17 SLLVLNITFRTTADDLFPLFEK-YGKVVDVFIP 48 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~-~G~i~~v~~~ 48 (195)
+|+|. |...++.++|.++|.. |..+..|.+.
T Consensus 280 tv~v~-~~~~~~~~~v~~~~~~~y~~~~fV~~~ 311 (381)
T PLN02968 280 TVYVH-YAPGVTAEDLHQHLKERYEGEEFVKVL 311 (381)
T ss_pred EEEEE-eCCCCCHHHHHHHHHHhCCCCCEEEeC
Confidence 34443 4566899999999988 6766666663
No 310
>PF11004 Kdo_hydroxy: 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase; InterPro: IPR021266 This bacterial family of proteins has no known function.
Probab=22.73 E-value=1.4e+02 Score=23.92 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=28.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhh-cC--CceeEEEeccCCCCCCccc
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFE-KY--GKVVDVFIPRDRRTGDSRG 58 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~-~~--G~i~~v~~~~~~~~g~~~g 58 (195)
...+.+||+-+|++.+++++. .|+. .+ +..++|.+ ++.++..+|
T Consensus 18 LE~G~VL~fP~l~F~l~~~E~-~fL~p~~~d~k~KNIs~--~p~~~~l~G 64 (281)
T PF11004_consen 18 LEQGKVLYFPQLRFPLSPEER-AFLDPAIVDPKRKNISY--RPNTGSLRG 64 (281)
T ss_pred hhCCCEEEeCCCCCCCChhHH-hhcChhhhCCCCCceee--cCCCCceec
Confidence 356789999999999988886 4544 33 33345544 344555555
No 311
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.62 E-value=60 Score=24.82 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=10.0
Q ss_pred CcccEEEEEEccH
Q 029300 55 DSRGFAFVRYKYA 67 (195)
Q Consensus 55 ~~~g~afV~f~~~ 67 (195)
..+-||||+|.+.
T Consensus 107 ~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 107 ASRPYAFIEFDTF 119 (216)
T ss_pred cCCCeeEEehhHH
Confidence 3457999999874
No 312
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=22.53 E-value=1.9e+02 Score=17.54 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=34.2
Q ss_pred eCCC-CCCCHHHHHHHhh-cCCce-eEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhC
Q 029300 21 LNIT-FRTTADDLFPLFE-KYGKV-VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (195)
Q Consensus 21 ~nLp-~~~~~~~l~~~f~-~~G~i-~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 78 (195)
..++ ..++.++|...+. .|+.. ..+.+...... | .+|...+.++.+.|+..+.
T Consensus 14 ~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e----~-d~v~l~sd~Dl~~a~~~~~ 69 (81)
T cd05992 14 FVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDED----G-DLVTISSDEDLEEAIEEAR 69 (81)
T ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCC----C-CEEEeCCHHHHHHHHHHHh
Confidence 3345 7888888877764 45542 23333322112 2 7899999999999999764
No 313
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=22.16 E-value=2.3e+02 Score=21.46 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=31.6
Q ss_pred HHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCc
Q 029300 30 DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (195)
Q Consensus 30 ~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 85 (195)
.++..+..+||. .++.+ .+..++.+.-..|+.=.+.+.+..|+..+....+...
T Consensus 45 k~F~k~AkKyGV-~yav~-kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~~~~ 98 (204)
T PF12687_consen 45 KEFKKEAKKYGV-DYAVK-KDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKLKKE 98 (204)
T ss_pred HHHHHHHHHcCC-ceEEe-eccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhhhhh
Confidence 344455667874 34333 4443443333455555688888889988877765443
No 314
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=22.04 E-value=1.8e+02 Score=16.99 Aligned_cols=52 Identities=13% Similarity=0.230 Sum_probs=26.1
Q ss_pred CCHHHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEcc--HHHHHHHHHhhCCc
Q 029300 27 TTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKY--ADEAQKAVDRLDGR 80 (195)
Q Consensus 27 ~~~~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~--~~~a~~a~~~l~g~ 80 (195)
-.-.++..+|..+| .|..+.+.... .....+..+...+ ..++..++..+.|.
T Consensus 11 G~l~~i~~~l~~~~inI~~~~~~~~~--~~~~~~~~i~v~~~~~~~~~~~l~~~~~v 65 (73)
T cd04902 11 GVIGKVGTILGEAGINIAGMQVGRDE--PGGEALMVLSVDEPVPDEVLEELRALPGI 65 (73)
T ss_pred CHHHHHHHHHHHcCcChhheEeeccC--CCCEEEEEEEeCCCCCHHHHHHHHcCCCc
Confidence 34566778888887 56666553321 1122333334333 23444555555543
No 315
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=21.81 E-value=1.1e+02 Score=17.83 Aligned_cols=24 Identities=13% Similarity=0.182 Sum_probs=18.4
Q ss_pred CCCHHHHHHHhhcCCceeEEEecc
Q 029300 26 RTTADDLFPLFEKYGKVVDVFIPR 49 (195)
Q Consensus 26 ~~~~~~l~~~f~~~G~i~~v~~~~ 49 (195)
.+..++|.+.|.+.|....+.|+.
T Consensus 29 ~~~~~~vl~~l~~nGg~CDCEVl~ 52 (53)
T PF10905_consen 29 QLDWEDVLEWLRENGGYCDCEVLY 52 (53)
T ss_pred CCCHHHHHHHHHHcCCCcceeeec
Confidence 345588999999999888777754
No 316
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=21.69 E-value=34 Score=20.97 Aligned_cols=23 Identities=9% Similarity=-0.041 Sum_probs=15.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHh
Q 029300 14 DTYSLLVLNITFRTTADDLFPLF 36 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f 36 (195)
.+..||||+||..+-++.=..++
T Consensus 26 tSr~vflG~IP~~W~~~~~~~~~ 48 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDHRKSWY 48 (67)
T ss_pred cCceEEECCCChHHHHcCcchHH
Confidence 35689999999887665433333
No 317
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=21.69 E-value=2.1e+02 Score=23.02 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=27.3
Q ss_pred CCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhC
Q 029300 26 RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (195)
Q Consensus 26 ~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 78 (195)
.+|+++|..+|..+.+ .+ ....|.+.+.+.|+.++..+.
T Consensus 128 ~Vtd~ei~~~y~~~~~--~~------------~v~hIlv~~~~~A~~v~~~l~ 166 (298)
T PRK04405 128 KVTNSQLKKAWKSYQP--KV------------TVQHILVSKKSTAETVIKKLK 166 (298)
T ss_pred CCCHHHHHHHHHHhhh--hE------------EEEEEEecChHHHHHHHHHHH
Confidence 4799999999987643 11 125566677888888887764
No 318
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.62 E-value=1.8e+02 Score=16.98 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=28.0
Q ss_pred CHHHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEc--cHHHHHHHHHhhCCcee
Q 029300 28 TADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYK--YADEAQKAVDRLDGRVV 82 (195)
Q Consensus 28 ~~~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~--~~~~a~~a~~~l~g~~~ 82 (195)
.-..|..+|..+| .|..+..... .+......+|.+. +.+.+.++|.. +|..+
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~--~~~~~~~v~i~v~~~~~~~~~~~L~~-~G~~v 68 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPS--KEEDNKILVFRVQTMNPRPIIEDLRR-AGYEV 68 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEecc--CCCCeEEEEEEEecCCHHHHHHHHHH-CCCee
Confidence 4456778888887 6666654332 1222233445554 55566666653 45443
No 319
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=21.59 E-value=2.2e+02 Score=22.46 Aligned_cols=30 Identities=17% Similarity=0.451 Sum_probs=21.5
Q ss_pred CCCcccEEEEEEcc----HHHHHHHHHhhCCcee
Q 029300 53 TGDSRGFAFVRYKY----ADEAQKAVDRLDGRVV 82 (195)
Q Consensus 53 ~g~~~g~afV~f~~----~~~a~~a~~~l~g~~~ 82 (195)
+...+|||.|.|.- ....+.||+..||..+
T Consensus 205 id~~kg~griafaip~d~~~~l~e~iK~~n~~i~ 238 (299)
T KOG2943|consen 205 IDRAKGFGRIAFAIPTDDLPKLQEAIKSANGTIL 238 (299)
T ss_pred ccccccceeEEEeccccccccHHHHHHHhccccc
Confidence 45567999999974 3466778887777643
No 320
>PHA03075 glutaredoxin-like protein; Provisional
Probab=21.44 E-value=1.8e+02 Score=20.10 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=18.5
Q ss_pred HHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEc
Q 029300 31 DLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK 65 (195)
Q Consensus 31 ~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~ 65 (195)
-|-++|..+|.-.-+.+..++.+| ..|||.|.
T Consensus 58 lInn~~~~lgne~v~lfKydp~t~---qmA~V~i~ 89 (123)
T PHA03075 58 LINNFFKHLGNEYVSLFKYDPETK---QMAFVDIS 89 (123)
T ss_pred hHHHHHHhhcccEEEEEEEcCCCC---cEEEEehh
Confidence 355666667743334455566555 46777664
No 321
>PLN02971 tryptophan N-hydroxylase
Probab=21.41 E-value=2.5e+02 Score=24.51 Aligned_cols=57 Identities=12% Similarity=0.097 Sum_probs=35.6
Q ss_pred EEeCCCCCC-C---HHHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCc
Q 029300 19 LVLNITFRT-T---ADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (195)
Q Consensus 19 ~V~nLp~~~-~---~~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 85 (195)
+||||+.-. . ...+.+++.+|| .|..+.+. +.-+|...+.+.++.++.. ++..+.++
T Consensus 67 iiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G---------~~~~vvv~dpe~ikevl~~-~~~~f~~r 128 (543)
T PLN02971 67 IVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLG---------NTHVIPVTCPKIAREIFKQ-QDALFASR 128 (543)
T ss_pred cccchHHhccCCcHhHHHHHHHHHhCCceEEEEcC---------CcceEEECCHHHHHHHHHh-cchhhcCC
Confidence 468875432 1 245778888999 67665542 1246777889999988874 44434333
No 322
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=21.33 E-value=2.1e+02 Score=20.05 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=25.2
Q ss_pred cEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 58 GFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 58 g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
.+-+..+.+.. ...++..|.+..+.|++|.|..-.
T Consensus 27 ~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 27 PFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred CeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECC
Confidence 45666666655 445677789999999999987653
No 323
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=21.19 E-value=1.9e+02 Score=18.82 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=31.1
Q ss_pred CCHHHHHHHhhcCCce--eEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCcee--cCcEEEEEecc
Q 029300 27 TTADDLFPLFEKYGKV--VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV--DGREITVQFAK 93 (195)
Q Consensus 27 ~~~~~l~~~f~~~G~i--~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a~ 93 (195)
..++-|...++....+ .-+.+..+. ..++-|-.-.++..||..++.... +|.+|.|-...
T Consensus 18 YdK~wLl~~iq~~c~v~F~Pv~fh~~~-------~~a~FfV~D~~tA~aLk~vsrkI~~~dg~Ki~I~V~p 81 (88)
T PF09162_consen 18 YDKDWLLNSIQSHCSVPFTPVDFHYEK-------NRAQFFVEDASTASALKDVSRKICDEDGFKISIFVNP 81 (88)
T ss_dssp S-HHHHHHHHHHHSSS----EEEEEET-------TEEEEEESSHHHHHHHHTTTTTEEBTTSBEE--EEEE
T ss_pred cCHHHHHHHHHHHCCCCeeeeeeeeeC-------CEEEEEeCCHHHHHHHHHCCCceECCCCCEEEEEEcC
Confidence 4555566655544332 223333332 245556566667777887777755 57777766543
No 324
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=21.14 E-value=2.2e+02 Score=17.72 Aligned_cols=62 Identities=16% Similarity=0.096 Sum_probs=37.4
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-------CCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCcee
Q 029300 18 LLVLNITFRTTADDLFPLFEK-------YGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (195)
Q Consensus 18 l~V~nLp~~~~~~~l~~~f~~-------~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 82 (195)
|...+||..+|.++|.....+ +..|..+.-..... ..+-||+.+=.+.+...++.+. .|..+
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d--~~k~~Cly~Ap~~eaV~~~~~~-aG~p~ 71 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSED--DGKIFCLYEAPDEEAVREHARR-AGLPA 71 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecC--CCeEEEEEECCCHHHHHHHHHH-cCCCc
Confidence 456788988999888766543 33444443333221 2245777666788887777764 35543
No 325
>KOG4357 consensus Uncharacterized conserved protein (involved in mesoderm differentiation in humans) [General function prediction only]
Probab=21.12 E-value=3e+02 Score=19.20 Aligned_cols=25 Identities=28% Similarity=0.193 Sum_probs=20.6
Q ss_pred EEEEEEccHHHHHHHHHhhCCceec
Q 029300 59 FAFVRYKYADEAQKAVDRLDGRVVD 83 (195)
Q Consensus 59 ~afV~f~~~~~a~~a~~~l~g~~~~ 83 (195)
-|+.-|.+-+.|-.|...|-|..++
T Consensus 115 raifm~kdge~a~e~k~fll~qd~~ 139 (164)
T KOG4357|consen 115 RAIFMFKDGEQAFEAKDFLLGQDFC 139 (164)
T ss_pred eEEEEEeChhHHHHHHHHhhccchh
Confidence 4888899999999998888777654
No 326
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=21.08 E-value=1.7e+02 Score=24.24 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=25.2
Q ss_pred CCCCCCHHHHHHHhhc-CCceeEEEeccC---CCC--CCcccEEEEEEccH
Q 029300 23 ITFRTTADDLFPLFEK-YGKVVDVFIPRD---RRT--GDSRGFAFVRYKYA 67 (195)
Q Consensus 23 Lp~~~~~~~l~~~f~~-~G~i~~v~~~~~---~~~--g~~~g~afV~f~~~ 67 (195)
|...++.++|.++|.. |..-..|.|... +.+ -....||.|-|...
T Consensus 253 l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~~~P~~k~V~GsN~cdIgf~~d 303 (349)
T COG0002 253 LKDLVTLEELHAAYEEFYAGEPFVRVVPEGGYPDTKAVAGSNFCDIGFAVD 303 (349)
T ss_pred cCCCCCHHHHHHHHHHHhCCCCeEEEecCCCCCChhhhcCCcceEEEEEEc
Confidence 4445899999999975 444445555442 111 11234666666543
No 327
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=21.01 E-value=5.4e+02 Score=23.05 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=24.9
Q ss_pred cEEEEEEccHHHHHHHHHhhCCc-ee-cCcEEEEEecccC
Q 029300 58 GFAFVRYKYADEAQKAVDRLDGR-VV-DGREITVQFAKYG 95 (195)
Q Consensus 58 g~afV~f~~~~~a~~a~~~l~g~-~~-~g~~l~v~~a~~~ 95 (195)
|-| +.|+++++|.+||. ++. .| .|..|.|.+.-++
T Consensus 407 GpA-~VF~see~a~~ai~--~g~i~i~~GdVvVIRyeGPk 443 (577)
T PRK13016 407 GPA-LVFDSYPEMKAAID--DENLDVTPDHVMVLRNAGPQ 443 (577)
T ss_pred eeE-EEECCHHHHHHHHh--CCCcCCCCCeEEEEeCCCCC
Confidence 444 56999999999987 443 33 6778888886543
No 328
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.86 E-value=1.7e+02 Score=22.99 Aligned_cols=58 Identities=10% Similarity=0.025 Sum_probs=35.3
Q ss_pred CcEEEEeCCCCC-----CCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEc---cHHHHHHHHHhhC
Q 029300 15 TYSLLVLNITFR-----TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK---YADEAQKAVDRLD 78 (195)
Q Consensus 15 ~~~l~V~nLp~~-----~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~---~~~~a~~a~~~l~ 78 (195)
..+|.|-|++.. .+.++|..++..++....+.++.|. +.+++.-. +.+....++..|.
T Consensus 137 ~v~l~lEN~~~~~~~l~~~~~el~~ll~~~~~~~~lg~~lDt------~H~~~~g~~~~~~~~~~~~~~~~~ 202 (274)
T TIGR00587 137 IVTILLENMAGQGSELGRSFEELAYIIKVIVDKRRIGVCLDT------CHFFAAGYDITTKAYFEVVKNEFD 202 (274)
T ss_pred CCEEEEEeCCCCCCccCCCHHHHHHHHHhcCCCCceEEEEEh------hhHHhcCCCcCCHHHHHHHHHHHH
Confidence 367889998743 4788999999888754456665553 33443322 3445555555443
No 329
>PF12993 DUF3877: Domain of unknown function, E. rectale Gene description (DUF3877); InterPro: IPR024539 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=20.75 E-value=1.7e+02 Score=21.61 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=16.8
Q ss_pred CCCCHHHHHHHhhcCCceeEE
Q 029300 25 FRTTADDLFPLFEKYGKVVDV 45 (195)
Q Consensus 25 ~~~~~~~l~~~f~~~G~i~~v 45 (195)
..+|-++|.++|.+|+.-..+
T Consensus 107 hgcT~e~I~~~F~~ys~~~~~ 127 (175)
T PF12993_consen 107 HGCTLEDILELFHKYSDNVHC 127 (175)
T ss_pred CCcCHHHHHHHHHHhcCCeEE
Confidence 468999999999999964333
No 330
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=20.74 E-value=1.7e+02 Score=19.55 Aligned_cols=26 Identities=15% Similarity=0.265 Sum_probs=18.4
Q ss_pred CcccE-EEEEEccHHHHHHHHHhhCCce
Q 029300 55 DSRGF-AFVRYKYADEAQKAVDRLDGRV 81 (195)
Q Consensus 55 ~~~g~-afV~f~~~~~a~~a~~~l~g~~ 81 (195)
.+... .-+.|.+.|+|.+.++. +|..
T Consensus 45 D~~~q~v~l~F~skE~Ai~yaer-~G~~ 71 (101)
T PF04800_consen 45 DPLSQSVRLKFDSKEDAIAYAER-NGWD 71 (101)
T ss_dssp -SEEE-CEEEESSHHHHHHHHHH-CT-E
T ss_pred ChhhCeeEeeeCCHHHHHHHHHH-cCCe
Confidence 33443 66899999999999885 6654
No 331
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=20.70 E-value=1.8e+02 Score=23.65 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=27.0
Q ss_pred CCCcEEEEeCCCCCC-C---HHHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEc-cHHHHHHHHHhh
Q 029300 13 RDTYSLLVLNITFRT-T---ADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYK-YADEAQKAVDRL 77 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~-~---~~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~-~~~~a~~a~~~l 77 (195)
..+..|||++|.... | -.+|.+.+...| .|..+.|-.. -.||++-..+ +.++..++|+.|
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSS-----y~G~G~~SL~~D~~eI~~~v~yl 97 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSS-----YSGWGTSSLDRDVEEIAQLVEYL 97 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGG-----BTTS-S--HHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCc-----cCCcCcchhhhHHHHHHHHHHHH
Confidence 456799999997642 2 356666665444 3445544321 2255554444 445555555543
No 332
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.69 E-value=2e+02 Score=16.99 Aligned_cols=60 Identities=8% Similarity=-0.055 Sum_probs=33.0
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhC
Q 029300 18 LLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (195)
Q Consensus 18 l~V~nLp~~~~~~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 78 (195)
|.|......-.-.+|-..+...| .|..+...... .+......-|+-.+.+.+...+..|.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~vev~~~~~l~~i~~~L~ 62 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG-RDYTVRDITVDAPSEEHAETIVAAVR 62 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec-CCEEEEEEEEEcCCHHHHHHHHHHHh
Confidence 44444444445678888888776 67777664322 11111112244457777777666554
No 333
>PRK07868 acyl-CoA synthetase; Validated
Probab=20.42 E-value=6.6e+02 Score=23.99 Aligned_cols=58 Identities=14% Similarity=0.042 Sum_probs=35.9
Q ss_pred CCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEc-----cHHHHHHHHHhhCCceec
Q 029300 26 RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK-----YADEAQKAVDRLDGRVVD 83 (195)
Q Consensus 26 ~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~-----~~~~a~~a~~~l~g~~~~ 83 (195)
.+...+|+.++..+..|.++.++..+..+...-.|||... +.++...++..|...++-
T Consensus 868 ~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~~~~~~~L~~~l~~l~~y~vP 930 (994)
T PRK07868 868 PVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGAAITAADLTEALASLPVGLGP 930 (994)
T ss_pred eEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCCcCCHHHHHHHHHhCCCCcCC
Confidence 3778999999999999988766543333323456787754 234445555545444443
No 334
>PF09341 Pcc1: Transcription factor Pcc1; InterPro: IPR015419 Pcc1 is a proposed transcription factor involved in the expression of genes regulated by alpha-factor and galactose; component of the EKC/KEOPS protein complex with Kae1, Gon7, Bud32, and Cgi121; related to human cancer-testis antigens [].; PDB: 2BNR_C 2P5W_C 3KLA_C 2F54_C 2P5E_C 2F53_C 3ENO_E 3ENC_B.
Probab=20.40 E-value=1.5e+02 Score=18.24 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=23.7
Q ss_pred cEEEEEEccHHHHHHHHHhhCCc------------eecCcEEEEEecc
Q 029300 58 GFAFVRYKYADEAQKAVDRLDGR------------VVDGREITVQFAK 93 (195)
Q Consensus 58 g~afV~f~~~~~a~~a~~~l~g~------------~~~g~~l~v~~a~ 93 (195)
..+-|.|.+.+.|+.|+..|..- .+.|..|.|.|..
T Consensus 3 ~~l~i~f~s~~~A~ii~~sL~~d~e~~~~~~~~~~~~~~~~L~i~~~A 50 (76)
T PF09341_consen 3 FTLEIPFESEEKAEIIYRSLKPDKELKPSRVKRELSVDGNKLVITIEA 50 (76)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHHHHH-SS-SSEEEEEEESSEEEEEEEE
T ss_pred EEEEEEeCCHHHHHHHHHHhCCCCCCCCCcEEEEEEEeCCEEEEEEEE
Confidence 35778999999999988765211 2356677776653
No 335
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=20.28 E-value=1.2e+02 Score=17.98 Aligned_cols=42 Identities=19% Similarity=0.351 Sum_probs=24.8
Q ss_pred HHHHhhcCCc-ee----EEEeccCCCCCCcccEEEEEEccHHHHHHHHH
Q 029300 32 LFPLFEKYGK-VV----DVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (195)
Q Consensus 32 l~~~f~~~G~-i~----~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~ 75 (195)
+..++.+||. +. ...++.. ........+|+|.+.+.|.+++.
T Consensus 11 ~~~~l~~~GG~~l~~~~~~~~leG--~~~~~~~viieFPs~~aa~~~~~ 57 (65)
T PF07045_consen 11 VPPILEKYGGRVLARGGEPEVLEG--DWDPDRVVIIEFPSMEAAKAWYN 57 (65)
T ss_dssp HHHHHHHTT-EEEEECEEEEEEES--T-SSSEEEEEEESSHHHHHHHHC
T ss_pred HHHHHHHcCCEEEEECCceeEEec--CCCCCeEEEEECCCHHHHHHHHC
Confidence 4566777763 22 1223322 12334678999999999888753
Done!