Query 029300
Match_columns 195
No_of_seqs 395 out of 2714
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 17:27:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029300.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029300hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 99.9 5.7E-26 1.9E-30 188.7 17.8 85 13-97 100-184 (437)
2 4fxv_A ELAV-like protein 1; RN 99.9 4.3E-25 1.5E-29 147.9 11.3 82 13-94 17-98 (99)
3 3ex7_B RNA-binding protein 8A; 99.9 9.7E-24 3.3E-28 147.2 10.7 91 7-97 14-104 (126)
4 2dgo_A Cytotoxic granule-assoc 99.9 5.8E-23 2E-27 141.0 14.4 90 9-98 9-98 (115)
5 3s8s_A Histone-lysine N-methyl 99.9 2E-23 7E-28 142.3 11.9 84 14-97 5-88 (110)
6 1x5u_A Splicing factor 3B subu 99.9 3E-23 1E-27 140.1 12.4 92 6-97 6-97 (105)
7 1x4c_A Splicing factor, argini 99.9 9.2E-23 3.1E-27 138.6 14.7 82 6-94 6-92 (108)
8 2dnm_A SRP46 splicing factor; 99.9 1.8E-23 6E-28 140.8 10.8 89 8-96 6-94 (103)
9 2e5h_A Zinc finger CCHC-type a 99.9 4.5E-23 1.5E-27 136.5 12.5 85 9-93 10-94 (94)
10 2lkz_A RNA-binding protein 5; 99.9 8.7E-24 3E-28 140.3 8.9 86 9-94 3-94 (95)
11 2cqc_A Arginine/serine-rich sp 99.9 4.3E-23 1.5E-27 136.8 12.2 88 7-94 7-94 (95)
12 2lxi_A RNA-binding protein 10; 99.9 5.8E-24 2E-28 140.2 7.8 83 15-97 1-85 (91)
13 3bs9_A Nucleolysin TIA-1 isofo 99.9 2.6E-23 8.9E-28 135.7 10.8 84 13-96 4-87 (87)
14 1x4h_A RNA-binding protein 28; 99.9 7.6E-23 2.6E-27 139.4 13.5 92 6-97 6-103 (111)
15 1whw_A Hypothetical protein ri 99.9 6.6E-23 2.3E-27 137.0 12.9 86 12-97 5-90 (99)
16 2cqd_A RNA-binding region cont 99.9 1.3E-22 4.3E-27 139.5 14.5 91 7-98 9-99 (116)
17 2dgs_A DAZ-associated protein 99.9 8E-23 2.7E-27 136.6 12.9 88 9-97 4-91 (99)
18 3md1_A Nuclear and cytoplasmic 99.9 5.4E-23 1.8E-27 133.0 11.5 82 15-96 1-82 (83)
19 2cq0_A Eukaryotic translation 99.9 5.7E-23 1.9E-27 138.3 11.9 86 11-96 11-96 (103)
20 1p27_B RNA-binding protein 8A; 99.9 3E-23 1E-27 140.4 10.6 89 8-96 16-104 (106)
21 2cqb_A Peptidyl-prolyl CIS-tra 99.9 5.1E-23 1.7E-27 138.3 11.4 87 11-97 8-94 (102)
22 1oo0_B CG8781-PA, drosophila Y 99.9 5.6E-23 1.9E-27 140.0 11.5 90 7-96 18-107 (110)
23 2cpe_A RNA-binding protein EWS 99.9 6.8E-23 2.3E-27 140.2 11.9 87 11-97 11-105 (113)
24 1x5s_A Cold-inducible RNA-bind 99.9 5E-23 1.7E-27 138.3 10.8 87 10-96 7-93 (102)
25 2cph_A RNA binding motif prote 99.9 1.3E-22 4.3E-27 137.5 12.7 90 8-97 8-99 (107)
26 2dnz_A Probable RNA-binding pr 99.9 9.9E-23 3.4E-27 135.1 11.9 84 14-97 4-87 (95)
27 2fy1_A RNA-binding motif prote 99.9 1.3E-22 4.5E-27 139.5 12.5 84 12-96 4-87 (116)
28 3mdf_A Peptidyl-prolyl CIS-tra 99.9 7.6E-23 2.6E-27 132.9 10.5 81 13-93 5-85 (85)
29 3beg_B Splicing factor, argini 99.9 9.6E-24 3.3E-28 145.1 6.5 80 5-91 6-85 (115)
30 2do4_A Squamous cell carcinoma 99.9 2.1E-22 7.2E-27 134.8 12.9 85 11-96 13-97 (100)
31 2la6_A RNA-binding protein FUS 99.9 1.1E-22 3.8E-27 136.0 10.8 86 8-93 6-99 (99)
32 2x1f_A MRNA 3'-END-processing 99.9 1.8E-22 6.3E-27 134.1 11.9 84 15-98 2-85 (96)
33 1wi8_A EIF-4B, eukaryotic tran 99.9 2.7E-22 9.3E-27 135.2 12.9 87 9-97 9-96 (104)
34 3ulh_A THO complex subunit 4; 99.9 1.4E-22 4.7E-27 137.3 11.3 85 8-93 22-106 (107)
35 2cpz_A CUG triplet repeat RNA- 99.9 1.1E-22 3.8E-27 139.6 10.9 85 12-96 22-106 (115)
36 1rk8_A CG8781-PA, CG8781-PA pr 99.9 1.4E-22 4.7E-27 147.8 11.6 91 7-97 64-154 (165)
37 2do0_A HnRNP M, heterogeneous 99.9 7.1E-22 2.4E-26 135.3 14.5 87 9-96 9-95 (114)
38 1x5t_A Splicing factor 3B subu 99.9 1.3E-22 4.4E-27 134.8 10.4 83 14-96 4-87 (96)
39 2dng_A Eukaryotic translation 99.9 3.7E-22 1.3E-26 134.3 12.8 86 9-96 9-94 (103)
40 2dgp_A Bruno-like 4, RNA bindi 99.9 1.8E-22 6.1E-27 136.5 11.0 89 8-96 6-97 (106)
41 2cq3_A RNA-binding protein 9; 99.9 8.5E-22 2.9E-26 132.5 14.0 88 8-97 8-95 (103)
42 1x4a_A Splicing factor, argini 99.9 6.3E-22 2.1E-26 134.6 13.3 86 8-96 15-100 (109)
43 2kxn_B Transformer-2 protein h 99.9 1.3E-22 4.3E-27 142.2 10.1 87 10-96 41-127 (129)
44 2d9p_A Polyadenylate-binding p 99.9 3.5E-22 1.2E-26 134.4 11.9 84 11-96 11-94 (103)
45 2jrs_A RNA-binding protein 39; 99.9 1.8E-22 6.1E-27 137.2 10.3 87 9-95 20-106 (108)
46 3p5t_L Cleavage and polyadenyl 99.9 2.7E-23 9.3E-28 136.6 6.0 82 16-97 2-85 (90)
47 2ywk_A Putative RNA-binding pr 99.9 2E-22 6.8E-27 133.6 10.2 85 9-94 10-94 (95)
48 3s7r_A Heterogeneous nuclear r 99.9 4E-22 1.4E-26 130.1 11.2 84 8-92 4-87 (87)
49 2dnh_A Bruno-like 5, RNA bindi 99.9 6E-22 2E-26 133.7 12.4 84 13-97 13-99 (105)
50 2cqi_A Nucleolysin TIAR; RNA r 99.9 1.1E-21 3.9E-26 131.9 13.6 86 9-96 9-94 (103)
51 2div_A TRNA selenocysteine ass 99.9 2.6E-22 8.8E-27 134.1 10.2 85 12-96 6-95 (99)
52 2khc_A Testis-specific RNP-typ 99.9 2.8E-22 9.5E-27 138.2 10.3 82 12-93 37-118 (118)
53 2dgv_A HnRNP M, heterogeneous 99.9 3.1E-22 1.1E-26 131.9 10.1 86 9-96 2-87 (92)
54 1h2v_Z 20 kDa nuclear CAP bind 99.9 5.2E-22 1.8E-26 143.3 12.2 84 13-96 37-120 (156)
55 4f25_A Polyadenylate-binding p 99.9 3.3E-22 1.1E-26 137.4 10.5 81 15-97 5-85 (115)
56 2cpf_A RNA binding motif prote 99.9 2.9E-22 9.9E-27 133.6 9.6 83 14-96 4-89 (98)
57 2dgx_A KIAA0430 protein; RRM d 99.9 7.7E-22 2.6E-26 131.2 11.7 83 12-97 6-92 (96)
58 2dgu_A Heterogeneous nuclear r 99.9 1.3E-21 4.4E-26 131.7 12.9 83 7-97 3-85 (103)
59 4a8x_A RNA-binding protein wit 99.9 3.6E-22 1.2E-26 130.4 9.7 82 14-95 3-85 (88)
60 3ns6_A Eukaryotic translation 99.9 7.5E-23 2.6E-27 137.1 6.6 81 14-94 5-92 (100)
61 2dhg_A TRNA selenocysteine ass 99.9 3.7E-22 1.3E-26 134.5 10.1 86 11-97 5-92 (104)
62 1u6f_A Tcubp1, RNA-binding pro 99.9 7.4E-22 2.5E-26 139.8 11.7 86 11-96 38-123 (139)
63 2dh8_A DAZ-associated protein 99.9 4.2E-22 1.4E-26 134.5 9.9 87 9-96 10-96 (105)
64 2cqp_A RNA-binding protein 12; 99.9 3.7E-22 1.3E-26 133.1 9.2 84 12-95 12-95 (98)
65 3ucg_A Polyadenylate-binding p 99.9 1E-21 3.4E-26 128.6 10.6 80 15-95 6-85 (89)
66 2dgw_A Probable RNA-binding pr 99.9 1.7E-21 5.9E-26 128.1 11.7 84 10-96 5-88 (91)
67 2kt5_A RNA and export factor-b 99.9 2.4E-21 8.1E-26 134.7 13.0 87 10-97 30-116 (124)
68 2dis_A Unnamed protein product 99.9 1.8E-21 6.2E-26 132.2 11.8 85 13-97 6-94 (109)
69 1p1t_A Cleavage stimulation fa 99.9 1.1E-22 3.6E-27 137.1 5.6 89 11-99 4-92 (104)
70 2lea_A Serine/arginine-rich sp 99.9 2.7E-22 9.2E-27 141.6 7.7 89 9-97 41-129 (135)
71 2cpi_A CCR4-NOT transcription 99.9 1.2E-21 4E-26 133.7 10.6 86 11-96 11-102 (111)
72 2cqg_A TDP-43, TAR DNA-binding 99.9 4.6E-21 1.6E-25 128.9 13.2 87 9-97 9-95 (103)
73 3n9u_C Cleavage and polyadenyl 99.9 1E-21 3.6E-26 141.7 10.4 82 14-95 54-137 (156)
74 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.9 2.8E-21 9.7E-26 136.8 12.0 82 11-92 59-140 (140)
75 1s79_A Lupus LA protein; RRM, 99.9 1.2E-21 4.1E-26 131.9 9.5 81 12-94 8-88 (103)
76 1sjq_A Polypyrimidine tract-bi 99.9 1E-21 3.5E-26 131.9 9.1 78 14-97 15-94 (105)
77 2ek1_A RNA-binding protein 12; 99.9 4.5E-22 1.5E-26 131.9 7.2 81 14-94 14-94 (95)
78 2cq4_A RNA binding motif prote 99.9 4.8E-22 1.6E-26 136.2 7.5 80 15-95 25-104 (114)
79 2j76_E EIF-4B, EIF4B, eukaryot 99.9 5.2E-22 1.8E-26 133.0 7.4 84 10-95 14-98 (100)
80 2m2b_A RNA-binding protein 10; 99.9 6.9E-22 2.4E-26 138.7 8.2 85 10-95 18-108 (131)
81 1why_A Hypothetical protein ri 99.9 4.9E-21 1.7E-25 127.4 12.0 81 11-97 13-95 (97)
82 1x4e_A RNA binding motif, sing 99.9 3E-22 1E-26 130.1 5.8 81 13-93 3-83 (85)
83 2rs2_A Musashi-1, RNA-binding 99.9 3E-21 1E-25 131.3 11.0 84 12-96 22-105 (109)
84 1wex_A Hypothetical protein (r 99.9 4.1E-21 1.4E-25 129.4 11.6 84 8-97 8-93 (104)
85 2kn4_A Immunoglobulin G-bindin 99.9 4.5E-21 1.5E-25 138.6 12.6 85 12-96 67-151 (158)
86 2jvr_A Nucleolar protein 3; RN 99.9 1.6E-21 5.5E-26 132.8 9.5 81 12-96 25-106 (111)
87 2dnq_A RNA-binding protein 4B; 99.9 4.9E-21 1.7E-25 125.7 11.3 78 12-97 5-82 (90)
88 2a3j_A U1 small nuclear ribonu 99.9 2.1E-21 7.2E-26 135.4 10.0 88 9-99 23-114 (127)
89 2fc9_A NCL protein; structure 99.9 7.6E-21 2.6E-25 127.4 12.4 83 10-96 10-92 (101)
90 2cq1_A PTB-like protein L; RRM 99.9 8.7E-21 3E-25 127.1 12.6 80 11-96 11-92 (101)
91 2cpy_A RNA-binding protein 12; 99.9 1.6E-21 5.6E-26 133.6 9.2 83 12-96 12-95 (114)
92 1wg5_A Heterogeneous nuclear r 99.9 5.1E-21 1.8E-25 129.0 11.4 84 10-95 10-94 (104)
93 3r27_A HnRNP L, heterogeneous 99.9 4.1E-21 1.4E-25 127.8 10.7 79 11-95 17-97 (100)
94 2nlw_A Eukaryotic translation 99.9 3E-21 1E-25 130.4 10.1 82 11-94 11-99 (105)
95 2dgt_A RNA-binding protein 30; 99.9 9.9E-21 3.4E-25 124.7 12.4 81 9-97 4-84 (92)
96 1x4d_A Matrin 3; structural ge 99.9 2.5E-21 8.5E-26 129.8 9.4 79 12-96 12-93 (102)
97 1x4b_A Heterogeneous nuclear r 99.9 4.1E-21 1.4E-25 131.9 10.7 81 15-96 27-107 (116)
98 2ytc_A PRE-mRNA-splicing facto 99.9 5.1E-21 1.7E-25 124.2 10.6 80 8-93 5-85 (85)
99 2mss_A Protein (musashi1); RNA 99.9 1.1E-21 3.7E-26 124.5 7.2 75 17-92 1-75 (75)
100 2cpj_A Non-POU domain-containi 99.9 4.5E-21 1.5E-25 128.1 10.6 84 7-96 7-90 (99)
101 2wbr_A GW182, gawky, LD47780P; 99.9 3.6E-21 1.2E-25 124.1 9.6 73 15-93 7-79 (89)
102 1wez_A HnRNP H', FTP-3, hetero 99.9 2.4E-21 8.1E-26 130.3 9.0 83 10-95 10-92 (102)
103 2err_A Ataxin-2-binding protei 99.9 3.9E-21 1.3E-25 130.7 10.2 83 11-95 25-107 (109)
104 2jwn_A Embryonic polyadenylate 99.9 4.5E-21 1.6E-25 133.2 10.4 81 15-96 36-116 (124)
105 2db1_A Heterogeneous nuclear r 99.9 3.6E-21 1.2E-25 132.7 9.6 83 10-94 12-97 (118)
106 2fc8_A NCL protein; structure 99.8 1.1E-20 3.6E-25 126.9 11.3 84 10-96 10-93 (102)
107 1x5o_A RNA binding motif, sing 99.8 1.3E-20 4.3E-25 129.0 11.8 82 12-94 22-111 (114)
108 1nu4_A U1A RNA binding domain; 99.8 3.1E-21 1E-25 128.3 8.0 86 10-98 3-92 (97)
109 2hgl_A HNRPF protein, heteroge 99.8 4E-21 1.4E-25 135.4 8.9 83 10-94 39-124 (136)
110 2ki2_A SS-DNA binding protein 99.8 7.2E-22 2.5E-26 129.7 4.6 81 16-97 2-82 (90)
111 2ad9_A Polypyrimidine tract-bi 99.8 9E-21 3.1E-25 130.3 10.2 80 12-97 28-109 (119)
112 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.9E-21 6.3E-26 123.9 6.4 76 16-92 1-76 (77)
113 2e5j_A Methenyltetrahydrofolat 99.8 8.4E-21 2.9E-25 126.3 9.8 81 11-96 15-95 (97)
114 1x4g_A Nucleolysin TIAR; struc 99.8 1.5E-20 5.3E-25 127.7 11.1 79 13-97 23-101 (109)
115 1wel_A RNA-binding protein 12; 99.8 1.4E-21 4.6E-26 136.0 5.8 84 11-95 21-104 (124)
116 2f3j_A RNA and export factor b 99.8 7.7E-21 2.6E-25 140.0 10.1 84 11-95 84-167 (177)
117 2dnp_A RNA-binding protein 14; 99.8 2E-20 6.8E-25 122.8 11.0 77 12-96 6-82 (90)
118 2dnn_A RNA-binding protein 12; 99.8 1.1E-20 3.8E-25 128.3 9.9 81 11-94 12-92 (109)
119 3q2s_C Cleavage and polyadenyl 99.8 4.4E-21 1.5E-25 146.8 8.8 82 14-95 67-150 (229)
120 2cpx_A Hypothetical protein FL 99.8 1.5E-21 5.3E-26 133.8 5.3 81 12-96 22-106 (115)
121 2lmi_A GRSF-1, G-rich sequence 99.8 4.1E-21 1.4E-25 130.2 7.2 85 9-95 5-92 (107)
122 2jvo_A Nucleolar protein 3; nu 99.8 1.5E-20 5E-25 127.6 9.8 79 11-97 27-105 (108)
123 2cpd_A Apobec-1 stimulating pr 99.8 8.6E-20 3E-24 121.8 13.4 78 11-96 11-90 (99)
124 2xnq_A Nuclear polyadenylated 99.8 3.5E-20 1.2E-24 123.4 11.4 77 11-95 18-95 (97)
125 1fj7_A Nucleolin RBD1, protein 99.8 1.4E-21 4.6E-26 131.1 4.4 82 13-96 15-96 (101)
126 2krb_A Eukaryotic translation 99.8 4.7E-21 1.6E-25 123.4 6.7 73 15-89 1-80 (81)
127 1whx_A Hypothetical protein ri 99.8 1.1E-20 3.8E-25 128.9 8.0 78 13-96 8-85 (111)
128 2hvz_A Splicing factor, argini 99.8 1.8E-20 6.1E-25 125.6 8.5 76 16-96 1-76 (101)
129 3lqv_A PRE-mRNA branch site pr 99.8 4.1E-20 1.4E-24 126.7 10.5 79 13-94 6-84 (115)
130 2kvi_A Nuclear polyadenylated 99.8 2E-20 6.9E-25 124.3 8.6 78 12-97 7-85 (96)
131 1fjc_A Nucleolin RBD2, protein 99.8 1.6E-20 5.5E-25 124.6 8.1 81 11-96 12-92 (96)
132 2la4_A Nuclear and cytoplasmic 99.8 2.8E-20 9.5E-25 124.6 9.1 75 14-94 26-100 (101)
133 1wf1_A RNA-binding protein RAL 99.8 4.5E-20 1.5E-24 125.5 10.0 75 13-95 25-100 (110)
134 2cqh_A IGF-II mRNA-binding pro 99.8 3E-20 1E-24 122.6 8.6 77 13-96 6-84 (93)
135 2lcw_A RNA-binding protein FUS 99.7 5E-22 1.7E-26 136.6 0.0 86 12-97 4-97 (116)
136 1iqt_A AUF1, heterogeneous nuc 99.8 7E-21 2.4E-25 120.7 5.3 75 17-92 1-75 (75)
137 2e44_A Insulin-like growth fac 99.8 5.6E-20 1.9E-24 122.0 9.8 81 11-95 11-92 (96)
138 1x4f_A Matrin 3; structural ge 99.8 1.7E-20 5.9E-25 127.5 7.2 79 12-96 22-103 (112)
139 4f02_A Polyadenylate-binding p 99.8 8.4E-20 2.9E-24 138.1 11.5 85 12-96 12-96 (213)
140 3egn_A RNA-binding protein 40; 99.8 7.9E-21 2.7E-25 135.2 5.4 87 12-98 42-133 (143)
141 1x5p_A Negative elongation fac 99.8 3.7E-19 1.3E-23 118.3 13.2 79 11-97 11-89 (97)
142 2e5g_A U6 snRNA-specific termi 99.8 1.4E-19 4.6E-24 119.7 10.5 78 12-95 5-82 (94)
143 2xs2_A Deleted in azoospermia- 99.8 2E-20 6.8E-25 125.6 6.4 85 9-96 3-87 (102)
144 2hgn_A Heterogeneous nuclear r 99.8 1.2E-20 4.1E-25 133.4 5.2 83 11-96 42-124 (139)
145 3md3_A Nuclear and cytoplasmic 99.8 2.5E-19 8.6E-24 129.5 12.2 83 11-93 83-165 (166)
146 2i2y_A Fusion protein consists 99.8 1.5E-19 5E-24 129.6 10.7 81 10-95 68-148 (150)
147 2diu_A KIAA0430 protein; struc 99.8 1.3E-19 4.6E-24 117.9 9.4 74 14-97 7-86 (96)
148 2e5i_A Heterogeneous nuclear r 99.8 2.6E-19 8.9E-24 123.9 11.4 75 16-96 26-103 (124)
149 2cq2_A Hypothetical protein LO 99.8 1E-19 3.5E-24 123.8 8.8 79 13-97 23-108 (114)
150 2hgm_A HNRPF protein, heteroge 99.8 8.4E-20 2.9E-24 126.9 8.2 80 11-93 38-119 (126)
151 1fxl_A Paraneoplastic encephal 99.8 3.7E-19 1.3E-23 128.7 11.7 82 15-96 2-83 (167)
152 1wg1_A KIAA1579 protein, homol 99.8 2E-19 6.7E-24 117.6 9.0 76 14-96 4-79 (88)
153 1b7f_A Protein (SXL-lethal pro 99.8 2.7E-19 9.1E-24 129.8 10.7 83 14-96 2-84 (168)
154 1sjr_A Polypyrimidine tract-bi 99.8 2.4E-19 8.2E-24 129.2 9.7 80 12-95 43-124 (164)
155 2qfj_A FBP-interacting repress 99.8 4E-19 1.4E-23 134.0 11.2 86 13-98 123-208 (216)
156 2dnl_A Cytoplasmic polyadenyla 99.8 2.8E-19 9.5E-24 122.4 9.2 81 11-94 4-87 (114)
157 2dha_A FLJ20171 protein; RRM d 99.8 1.1E-19 3.7E-24 126.0 6.7 80 13-94 21-104 (123)
158 1l3k_A Heterogeneous nuclear r 99.8 4.8E-19 1.6E-23 131.6 10.8 87 8-95 6-92 (196)
159 2yh0_A Splicing factor U2AF 65 99.8 7.1E-19 2.4E-23 130.9 11.4 84 13-96 112-195 (198)
160 3zzy_A Polypyrimidine tract-bi 99.8 7.2E-19 2.5E-23 122.3 10.5 77 14-95 27-106 (130)
161 2j8a_A Histone-lysine N-methyl 99.8 3.6E-19 1.2E-23 122.3 8.4 79 16-94 3-95 (136)
162 1l3k_A Heterogeneous nuclear r 99.8 8.9E-19 3E-23 130.2 11.0 85 13-98 102-186 (196)
163 2g4b_A Splicing factor U2AF 65 99.8 8.7E-19 3E-23 127.6 10.8 80 13-92 92-171 (172)
164 3d2w_A TAR DNA-binding protein 99.8 1.7E-18 5.8E-23 113.4 10.2 77 11-96 7-85 (89)
165 2cjk_A Nuclear polyadenylated 99.8 5.3E-19 1.8E-23 128.2 8.5 80 15-95 87-166 (167)
166 2bz2_A Negative elongation fac 99.8 1.1E-18 3.9E-23 120.6 9.4 79 12-98 36-114 (121)
167 1b7f_A Protein (SXL-lethal pro 99.8 2.9E-18 1E-22 124.2 11.1 81 12-92 86-168 (168)
168 4f02_A Polyadenylate-binding p 99.8 1.7E-18 5.7E-23 130.9 10.2 81 14-96 102-182 (213)
169 2hzc_A Splicing factor U2AF 65 99.8 2E-18 6.8E-23 112.3 8.9 72 13-91 4-86 (87)
170 3tyt_A Heterogeneous nuclear r 99.8 3.7E-18 1.3E-22 128.4 11.2 77 14-95 3-80 (205)
171 3u1l_A PRE-mRNA-splicing facto 99.8 1.1E-18 3.8E-23 133.5 8.4 83 12-100 131-234 (240)
172 3md3_A Nuclear and cytoplasmic 99.8 3E-18 1E-22 123.7 10.2 80 16-96 1-80 (166)
173 2qfj_A FBP-interacting repress 99.8 2.7E-18 9.3E-23 129.4 10.0 83 14-96 27-109 (216)
174 2pe8_A Splicing factor 45; RRM 99.8 6E-18 2.1E-22 114.0 10.6 82 13-94 6-93 (105)
175 2adc_A Polypyrimidine tract-bi 99.8 3E-18 1E-22 130.9 9.6 88 3-95 20-110 (229)
176 1fxl_A Paraneoplastic encephal 99.8 5.1E-18 1.8E-22 122.7 10.1 80 13-92 86-167 (167)
177 1wf0_A TDP-43, TAR DNA-binding 99.8 2.9E-18 9.9E-23 111.9 7.7 76 14-96 4-79 (88)
178 1fje_B Nucleolin RBD12, protei 99.7 6.3E-18 2.2E-22 123.5 10.1 78 13-95 97-174 (175)
179 3pgw_A U1-A; protein-RNA compl 99.7 1.3E-17 4.5E-22 130.9 12.1 85 10-97 4-92 (282)
180 3nmr_A Cugbp ELAV-like family 99.7 8.3E-18 2.8E-22 122.5 9.9 80 13-93 93-175 (175)
181 3nmr_A Cugbp ELAV-like family 99.7 9.6E-18 3.3E-22 122.2 9.4 82 14-95 2-88 (175)
182 2ghp_A U4/U6 snRNA-associated 99.7 1.4E-17 4.7E-22 131.4 10.8 84 12-96 207-292 (292)
183 2cjk_A Nuclear polyadenylated 99.7 7.8E-18 2.7E-22 122.0 8.5 79 14-94 2-80 (167)
184 2voo_A Lupus LA protein; RNA-b 99.7 2E-17 7E-22 123.2 10.7 78 15-94 109-186 (193)
185 3sde_A Paraspeckle component 1 99.7 3.4E-17 1.2E-21 127.5 11.0 85 4-94 11-95 (261)
186 2dit_A HIV TAT specific factor 99.7 8.1E-17 2.8E-21 109.7 11.4 83 10-96 10-103 (112)
187 3smz_A Protein raver-1, ribonu 99.7 4.1E-17 1.4E-21 128.1 10.7 88 11-99 180-268 (284)
188 3pgw_A U1-A; protein-RNA compl 99.7 7.3E-17 2.5E-21 126.6 10.9 76 13-93 205-281 (282)
189 3smz_A Protein raver-1, ribonu 99.7 1.2E-16 4.2E-21 125.4 11.8 83 14-96 94-176 (284)
190 1fje_B Nucleolin RBD12, protei 99.7 1.1E-17 3.7E-22 122.2 4.3 85 10-96 8-92 (175)
191 1qm9_A Polypyrimidine tract-bi 99.7 5.2E-17 1.8E-21 121.0 7.9 77 15-96 3-80 (198)
192 3v4m_A Splicing factor U2AF 65 99.7 2E-16 6.9E-21 106.5 9.8 81 14-94 4-96 (105)
193 3tyt_A Heterogeneous nuclear r 99.7 1E-16 3.6E-21 120.5 8.2 77 14-92 122-204 (205)
194 1jmt_A Splicing factor U2AF 35 99.7 4.6E-17 1.6E-21 109.5 4.5 72 20-92 20-103 (104)
195 1qm9_A Polypyrimidine tract-bi 99.7 2.3E-16 7.9E-21 117.5 8.7 77 13-94 118-196 (198)
196 2adc_A Polypyrimidine tract-bi 99.7 4.8E-16 1.6E-20 118.7 10.2 77 13-94 149-227 (229)
197 3ue2_A Poly(U)-binding-splicin 99.7 3.7E-16 1.3E-20 107.3 8.4 81 14-94 19-108 (118)
198 2ghp_A U4/U6 snRNA-associated 99.7 4.2E-16 1.4E-20 122.8 9.7 83 14-97 116-199 (292)
199 2g4b_A Splicing factor U2AF 65 99.6 6.6E-16 2.3E-20 112.2 9.7 76 13-95 2-88 (172)
200 2d9o_A DNAJ (HSP40) homolog, s 99.6 3.2E-15 1.1E-19 99.6 11.4 76 15-97 10-92 (100)
201 3sde_A Paraspeckle component 1 99.6 1.1E-15 3.6E-20 119.0 10.3 81 14-95 95-179 (261)
202 2yh0_A Splicing factor U2AF 65 99.6 1.3E-15 4.3E-20 113.2 9.6 75 14-95 3-88 (198)
203 3tht_A Alkylated DNA repair pr 99.6 3.7E-15 1.3E-19 119.6 10.0 76 12-93 15-97 (345)
204 3s6e_A RNA-binding protein 39; 99.6 1.6E-14 5.5E-19 98.4 10.1 78 13-94 5-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.5 1.5E-13 5.1E-18 94.0 10.1 81 9-95 12-96 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.5 3E-13 1E-17 87.1 9.6 73 15-96 7-87 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.3 4.2E-12 1.4E-16 82.2 5.5 70 15-93 15-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.2 4.7E-11 1.6E-15 90.4 10.3 79 15-93 124-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 99.0 1.3E-09 4.5E-14 71.9 8.8 73 14-92 20-97 (117)
210 1wey_A Calcipressin 1; structu 98.6 2E-07 6.8E-12 61.3 7.2 75 15-95 5-84 (104)
211 1uw4_A UPF3X; nonsense mediate 98.4 2.4E-06 8.3E-11 55.1 9.2 79 16-94 2-87 (91)
212 1whv_A Poly(A)-specific ribonu 98.4 1.3E-06 4.5E-11 56.5 7.0 57 13-78 14-70 (100)
213 1wwh_A Nucleoporin 35, nucleop 98.4 3.4E-06 1.2E-10 56.9 8.9 74 12-93 21-95 (119)
214 3ctr_A Poly(A)-specific ribonu 98.2 2.2E-06 7.5E-11 55.6 5.4 55 15-78 6-60 (101)
215 2dhx_A Poly (ADP-ribose) polym 98.2 6E-05 2.1E-09 49.3 11.7 72 14-94 7-83 (104)
216 2l08_A Regulator of nonsense t 98.1 1.5E-05 5.1E-10 51.8 7.2 80 14-93 8-94 (97)
217 3p3d_A Nucleoporin 53; structu 97.8 6.2E-05 2.1E-09 51.4 6.3 78 14-93 6-97 (132)
218 3pq1_A Poly(A) RNA polymerase; 97.2 0.00022 7.4E-09 59.2 3.4 55 16-76 54-108 (464)
219 2i2y_A Fusion protein consists 96.8 0.00063 2.1E-08 47.7 2.5 40 54-94 10-50 (150)
220 2kn4_A Immunoglobulin G-bindin 96.7 0.0011 3.7E-08 46.8 3.4 34 45-80 3-36 (158)
221 3d45_A Poly(A)-specific ribonu 95.9 0.026 8.8E-07 47.6 7.9 57 14-79 439-495 (507)
222 4eyt_A Telomerase associated p 94.8 0.42 1.5E-05 30.2 9.2 59 11-77 8-66 (129)
223 3pgw_S U1-70K; protein-RNA com 94.5 0.13 4.5E-06 42.4 7.8 10 66-75 115-124 (437)
224 2g0c_A ATP-dependent RNA helic 91.3 0.62 2.1E-05 28.2 5.7 68 17-93 2-75 (76)
225 4e8u_A Putative uncharacterize 81.7 7.2 0.00025 27.7 7.3 57 16-75 13-81 (172)
226 3fry_A Probable copper-exporti 80.2 5.6 0.00019 23.1 5.6 55 15-76 6-60 (73)
227 3lpe_A Putative transcription 75.3 12 0.00041 23.4 6.3 35 41-80 39-73 (92)
228 2cu1_A Mitogen-activated prote 72.2 6.5 0.00022 25.2 4.3 66 20-94 21-87 (103)
229 2exu_A Transcription initiatio 67.8 15 0.0005 26.8 6.0 27 56-82 148-174 (200)
230 4a4j_A Pacszia, cation-transpo 64.1 14 0.00048 20.7 4.6 55 16-76 4-61 (69)
231 2jrh_A Mitogen-activated prote 62.6 24 0.00084 22.0 5.4 67 20-95 17-84 (94)
232 3dxs_X Copper-transporting ATP 62.6 19 0.00065 20.5 6.1 55 16-76 4-62 (74)
233 2npt_B Mitogen-activated prote 62.1 22 0.00074 22.5 5.1 51 20-78 33-84 (100)
234 4bby_A Alkyldihydroxyacetoneph 61.8 7.2 0.00025 33.8 4.0 55 22-77 350-408 (658)
235 2lfv_A Protein DAMX; cell divi 64.6 1.8 6.3E-05 28.2 0.0 63 15-82 25-89 (106)
236 3h7h_B Transcription elongatio 59.8 25 0.00084 22.7 5.4 36 41-81 40-75 (106)
237 1vd2_A Protein kinase C, IOTA 57.7 16 0.00055 22.9 4.1 53 18-77 17-74 (89)
238 2lsl_A Telomerase associated p 61.3 2.3 7.9E-05 27.0 0.0 69 9-77 12-97 (137)
239 3j21_T 50S ribosomal protein L 56.4 21 0.00072 22.2 4.4 56 18-76 25-82 (86)
240 3uzu_A Ribosomal RNA small sub 55.7 3.8 0.00013 31.4 1.1 33 16-48 115-147 (279)
241 2c60_A Human mitogen-activated 55.3 22 0.00075 22.8 4.4 51 20-78 44-95 (111)
242 3fut_A Dimethyladenosine trans 54.5 12 0.00041 28.5 3.8 31 15-46 110-140 (271)
243 3ts2_A Protein LIN-28 homolog 52.1 3.2 0.00011 28.8 0.1 28 30-65 2-29 (148)
244 2w7a_A LINE-1 ORF1P; RNA-bindi 51.8 44 0.0015 21.3 6.1 75 16-90 4-98 (100)
245 3lo3_A Uncharacterized conserv 49.9 30 0.001 21.6 4.6 20 56-75 52-71 (94)
246 2g9o_A Copper-transporting ATP 48.8 41 0.0014 20.1 5.4 56 16-77 5-64 (90)
247 1kvi_A Copper-transporting ATP 48.6 36 0.0012 19.3 6.6 57 15-77 9-69 (79)
248 1xn9_A 30S ribosomal protein S 48.4 30 0.001 22.2 4.3 48 25-73 28-80 (101)
249 1q8l_A Copper-transporting ATP 48.2 39 0.0013 19.7 7.8 56 15-76 10-69 (84)
250 2v94_A RPS24, 30S ribosomal pr 48.1 37 0.0013 22.0 4.8 48 25-73 37-89 (107)
251 1yg0_A COP associated protein; 48.0 31 0.0011 18.5 5.6 54 17-76 4-60 (66)
252 3swz_A Steroid 17-alpha-hydrox 47.2 33 0.0011 27.7 5.6 57 18-84 17-77 (494)
253 1ywx_A 30S ribosomal protein S 45.7 34 0.0012 21.9 4.3 47 25-72 28-79 (102)
254 2xmw_A PACS-N, cation-transpor 45.3 37 0.0013 18.5 6.6 55 16-76 5-62 (71)
255 3ced_A Methionine import ATP-b 43.7 32 0.0011 21.6 4.0 62 17-78 22-86 (98)
256 1qyr_A KSGA, high level kasuga 43.2 19 0.00063 27.0 3.2 27 17-43 92-118 (252)
257 1aw0_A Menkes copper-transport 43.0 41 0.0014 18.4 4.9 56 16-77 5-64 (72)
258 2l3m_A Copper-ION-binding prot 41.8 43 0.0015 18.3 6.5 55 16-76 7-65 (71)
259 3tqs_A Ribosomal RNA small sub 41.4 8.6 0.00029 29.0 1.1 31 17-47 98-128 (255)
260 1i4w_A Mitochondrial replicati 41.2 22 0.00074 28.3 3.4 22 17-38 144-165 (353)
261 3u5e_X 60S ribosomal protein L 41.0 35 0.0012 23.3 3.9 54 19-75 82-137 (142)
262 3pm9_A Putative oxidoreductase 40.8 42 0.0015 27.7 5.3 54 23-77 194-251 (476)
263 1y3j_A Copper-transporting ATP 40.4 49 0.0017 18.6 5.1 56 16-77 5-64 (77)
264 3ftd_A Dimethyladenosine trans 40.0 17 0.00058 27.1 2.5 25 16-40 96-120 (249)
265 2ew9_A Copper-transporting ATP 39.6 73 0.0025 20.6 5.6 31 17-47 83-113 (149)
266 1cpz_A Protein (COPZ); copper 38.6 47 0.0016 17.8 7.6 54 17-76 3-60 (68)
267 4a17_R RPL23A, 60S ribosomal p 38.6 39 0.0013 23.3 3.9 54 19-75 90-145 (150)
268 2kt2_A Mercuric reductase; nme 38.5 48 0.0017 18.0 6.7 54 17-76 3-59 (69)
269 2g1d_A 30S ribosomal protein S 38.3 33 0.0011 21.8 3.3 47 25-72 29-80 (98)
270 1p6t_A Potential copper-transp 37.9 83 0.0028 20.5 6.5 12 69-80 91-102 (151)
271 1osd_A MERP, hypothetical prot 37.6 51 0.0017 18.0 6.8 54 17-76 6-63 (72)
272 2xzm_P RPS24E; ribosome, trans 37.1 61 0.0021 22.3 4.7 48 25-73 31-83 (149)
273 2e5p_A Protein PHF1, PHD finge 37.0 21 0.00073 20.9 2.0 19 40-66 28-46 (68)
274 3cjk_B Copper-transporting ATP 36.4 56 0.0019 18.1 6.3 54 17-76 5-62 (75)
275 2ofg_X Zinc-transporting ATPas 36.3 79 0.0027 19.8 7.5 56 16-77 10-69 (111)
276 3iz5_X 60S ribosomal protein L 35.8 39 0.0013 23.4 3.5 53 20-75 93-147 (152)
277 2k2p_A Uncharacterized protein 35.8 27 0.00094 20.9 2.6 56 15-76 23-79 (85)
278 1x60_A Sporulation-specific N- 35.3 39 0.0013 19.9 3.2 65 13-82 7-71 (79)
279 1vq8_S 50S ribosomal protein L 35.2 44 0.0015 20.6 3.4 53 18-73 24-78 (85)
280 1wvf_A 4-cresol dehydrogenase 35.2 23 0.00079 29.5 2.8 43 31-74 217-261 (520)
281 3e6i_A CYPIIE1, P450-J, cytoch 35.0 37 0.0013 27.1 4.0 50 18-76 19-71 (476)
282 3dhx_A Methionine import ATP-b 34.4 48 0.0016 21.1 3.7 53 26-78 32-86 (106)
283 2yko_A LINE-1 ORF1P; RNA-bindi 34.3 1.4E+02 0.0049 22.1 7.0 78 15-92 52-149 (233)
284 2i9x_A Putative septation prot 33.8 48 0.0016 20.6 3.4 46 41-93 5-52 (87)
285 2uuu_A Alkyldihydroxyacetoneph 33.7 31 0.0011 29.3 3.4 55 23-78 281-339 (584)
286 1fvq_A Copper-transporting ATP 33.6 60 0.0021 17.6 5.7 55 17-77 5-62 (72)
287 2e7g_A Putative ribosome-bindi 33.0 1E+02 0.0034 20.4 5.3 35 39-77 43-78 (129)
288 3l3e_A DNA topoisomerase 2-bin 32.6 26 0.00089 22.2 2.2 32 11-43 14-45 (107)
289 1yjr_A Copper-transporting ATP 32.6 65 0.0022 17.7 8.1 56 15-76 5-64 (75)
290 2m0o_A PHD finger protein 1; t 31.9 28 0.00096 21.0 2.0 20 40-67 45-64 (79)
291 2rf4_B DNA-directed RNA polyme 31.3 36 0.0012 21.0 2.5 30 11-40 15-44 (87)
292 2cs4_A Protein C12ORF2; GTP bi 31.3 23 0.00078 22.5 1.6 22 20-41 21-43 (95)
293 2okq_A Hypothetical protein YB 31.2 1E+02 0.0036 20.9 5.0 44 32-75 50-108 (141)
294 2jsh_A Appetite-regulating hor 31.1 30 0.001 16.2 1.6 22 22-43 2-23 (26)
295 2ns6_A Mobilization protein A; 31.0 1.1E+02 0.0036 21.8 5.4 50 15-67 70-127 (185)
296 3p8b_B Transcription antitermi 30.6 42 0.0014 22.9 3.1 34 42-80 33-66 (152)
297 3fjv_A Uncharacterized novel p 30.5 79 0.0027 22.8 4.6 56 28-90 66-128 (194)
298 1mwy_A ZNTA; open-faced beta-s 30.3 73 0.0025 17.6 7.9 56 16-77 5-62 (73)
299 2eqj_A Metal-response element- 30.2 32 0.0011 20.2 2.0 9 58-66 42-50 (66)
300 2kyz_A Heavy metal binding pro 29.6 48 0.0016 18.1 2.9 53 17-76 4-56 (67)
301 1ytr_A Bacteriocin plantaricin 29.0 32 0.0011 15.5 1.5 12 29-40 14-25 (26)
302 3u5c_Y RP50, 40S ribosomal pro 28.6 1.4E+02 0.0047 20.2 7.1 47 25-72 33-84 (135)
303 2qif_A Copper chaperone COPZ; 28.4 71 0.0024 16.8 6.5 54 17-76 5-62 (69)
304 2crl_A Copper chaperone for su 28.0 1.1E+02 0.0036 18.7 5.2 53 17-76 22-75 (98)
305 3pm0_A Cypib1, cytochrome P450 27.9 77 0.0026 25.5 4.8 49 18-75 18-68 (507)
306 1opz_A Potential copper-transp 27.9 80 0.0027 17.2 7.4 55 16-76 8-66 (76)
307 2ia9_A Putative septation prot 27.9 66 0.0023 20.5 3.4 46 41-93 5-52 (100)
308 3iwl_A Copper transport protei 27.1 85 0.0029 17.3 5.4 53 16-76 4-57 (68)
309 2jya_A AGR_C_3324P, uncharacte 27.1 81 0.0028 20.3 3.8 27 54-81 48-74 (106)
310 3bgu_A Ferredoxin-like protein 26.9 1.3E+02 0.0044 19.3 6.9 54 18-72 25-88 (116)
311 2i9z_A Putative septation prot 26.9 72 0.0025 20.5 3.5 26 41-66 5-30 (105)
312 2qsw_A Methionine import ATP-b 26.7 1.1E+02 0.0037 19.0 4.4 62 17-78 25-88 (100)
313 2qrr_A Methionine import ATP-b 26.7 1.2E+02 0.004 18.8 6.1 62 17-78 25-88 (101)
314 4id3_A DNA repair protein REV1 26.7 90 0.0031 18.6 4.0 33 10-43 5-37 (92)
315 3rz2_A Protein tyrosine phosph 26.6 1.4E+02 0.0047 20.7 5.5 28 14-41 35-62 (189)
316 1rlh_A Conserved hypothetical 26.5 1.4E+02 0.0046 20.9 4.9 30 11-40 22-51 (173)
317 3bb5_A Stress responsive alpha 26.1 1.4E+02 0.0047 19.3 7.1 57 17-73 23-90 (121)
318 2ko1_A CTR148A, GTP pyrophosph 25.7 1.1E+02 0.0036 17.9 6.6 49 27-79 17-68 (88)
319 2ekm_A Hypothetical protein ST 24.9 1.7E+02 0.0059 20.2 6.0 35 11-45 11-45 (162)
320 1wvq_A Hypothetical protein PA 24.4 1.8E+02 0.0062 20.2 6.0 31 11-41 14-44 (167)
321 4hhu_A OR280; engineered prote 24.4 1.6E+02 0.0053 19.4 5.0 72 16-92 43-129 (170)
322 1pqs_A Cell division control p 24.2 34 0.0011 20.7 1.4 51 20-77 5-64 (77)
323 3n9y_A Cholesterol SIDE-chain 24.1 1.3E+02 0.0043 24.0 5.4 38 30-76 36-73 (487)
324 1wj6_A KIAA0049 protein, RSGI 24.0 1.2E+02 0.0041 19.3 4.0 81 4-93 3-94 (101)
325 3pyf_A 4-diphosphocytidyl-2-C- 23.5 2E+02 0.0067 21.9 6.1 35 58-92 259-293 (306)
326 3ld6_A Lanosterol 14-alpha dem 23.1 1.4E+02 0.0046 23.8 5.4 48 19-75 22-71 (461)
327 3mfb_A Uncharacterized protein 23.1 1.3E+02 0.0044 20.8 4.5 36 27-62 3-41 (157)
328 1o57_A PUR operon repressor; p 23.1 1.8E+02 0.006 22.2 5.7 41 32-77 47-87 (291)
329 2nn4_A Hypothetical protein YQ 22.8 30 0.001 20.7 1.0 18 28-45 4-21 (72)
330 2od0_A Hypothetical protein VP 22.8 79 0.0027 19.9 3.2 22 27-48 4-25 (105)
331 2ldi_A Zinc-transporting ATPas 22.6 98 0.0033 16.4 6.6 55 16-76 5-63 (71)
332 2d8m_A DNA-repair protein XRCC 22.5 1.6E+02 0.0053 19.2 4.7 30 13-43 23-52 (129)
333 2e5q_A PHD finger protein 19; 22.1 20 0.00069 20.7 0.1 10 57-66 35-44 (63)
334 1e8g_A Vanillyl-alcohol oxidas 21.9 37 0.0013 28.7 1.8 43 32-75 250-294 (560)
335 2zkr_s 60S ribosomal protein L 21.8 1.4E+02 0.0049 20.6 4.4 53 19-74 96-150 (156)
336 3pc6_A DNA repair protein XRCC 21.8 1.6E+02 0.0055 18.6 4.5 33 10-42 5-37 (104)
337 1jww_A Potential copper-transp 21.5 1.2E+02 0.0039 16.9 5.2 55 16-76 5-63 (80)
338 2fdv_A Cytochrome P450 2A6; CY 21.3 84 0.0029 25.2 3.8 48 19-75 20-70 (476)
339 3d53_A Inorganic pyrophosphata 20.8 1.9E+02 0.0064 20.3 5.0 38 29-77 132-169 (173)
340 1vgg_A Conserved hypothetical 20.8 1.8E+02 0.0062 20.0 4.7 28 11-38 9-36 (161)
341 4hcz_A PHD finger protein 1; p 20.5 65 0.0022 18.3 2.0 10 58-67 32-41 (58)
342 4aj5_1 SKA3, spindle and kinet 20.4 38 0.0013 21.6 1.1 12 29-40 90-101 (101)
343 2rop_A Copper-transporting ATP 20.3 2.2E+02 0.0076 19.7 7.0 56 16-77 124-183 (202)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.94 E-value=5.7e-26 Score=188.71 Aligned_cols=85 Identities=27% Similarity=0.523 Sum_probs=80.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
.+.++|||+|||+.||+++|.++|.+||.|+.|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 029300 93 KYGPN 97 (195)
Q Consensus 93 ~~~~~ 97 (195)
++...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87554
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.92 E-value=4.3e-25 Score=147.88 Aligned_cols=82 Identities=30% Similarity=0.503 Sum_probs=78.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
.++++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|++|.|.||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cc
Q 029300 93 KY 94 (195)
Q Consensus 93 ~~ 94 (195)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 3
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.90 E-value=9.7e-24 Score=147.15 Aligned_cols=91 Identities=29% Similarity=0.531 Sum_probs=84.0
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcE
Q 029300 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (195)
Q Consensus 7 ~~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 86 (195)
+.|+...+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.
T Consensus 14 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 14 PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp CCBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 44556677889999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEEEecccCCC
Q 029300 87 ITVQFAKYGPN 97 (195)
Q Consensus 87 l~v~~a~~~~~ 97 (195)
|.|+|+++.+.
T Consensus 94 l~v~~a~~~~~ 104 (126)
T 3ex7_B 94 ISVDWCFVRGP 104 (126)
T ss_dssp CEEEESEESSS
T ss_pred EEEEEecCCCC
Confidence 99999986543
No 4
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.90 E-value=5.8e-23 Score=140.98 Aligned_cols=90 Identities=26% Similarity=0.527 Sum_probs=83.4
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
+.+..+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44556788999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEecccCCCc
Q 029300 89 VQFAKYGPNA 98 (195)
Q Consensus 89 v~~a~~~~~~ 98 (195)
|.|++..+..
T Consensus 89 V~~a~~~~~~ 98 (115)
T 2dgo_A 89 TNWATRKPPA 98 (115)
T ss_dssp EEESSCCCCC
T ss_pred EEEccCCCCC
Confidence 9999876544
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.90 E-value=2e-23 Score=142.26 Aligned_cols=84 Identities=24% Similarity=0.218 Sum_probs=79.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
+..+|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|+++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cCCC
Q 029300 94 YGPN 97 (195)
Q Consensus 94 ~~~~ 97 (195)
....
T Consensus 85 ~~~~ 88 (110)
T 3s8s_A 85 KGQQ 88 (110)
T ss_dssp TTHH
T ss_pred CCcH
Confidence 5443
No 6
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=3e-23 Score=140.11 Aligned_cols=92 Identities=24% Similarity=0.376 Sum_probs=84.2
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCc
Q 029300 6 KSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (195)
Q Consensus 6 ~~~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 85 (195)
...+......++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 6 SGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp SCCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred CCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 34455567789999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred EEEEEecccCCC
Q 029300 86 EITVQFAKYGPN 97 (195)
Q Consensus 86 ~l~v~~a~~~~~ 97 (195)
.|.|.++++...
T Consensus 86 ~l~v~~a~~~~~ 97 (105)
T 1x5u_A 86 PIRVNKASAHNK 97 (105)
T ss_dssp BCEEEETTTTSC
T ss_pred EEEEEECCCCCc
Confidence 999999986543
No 7
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.90 E-value=9.2e-23 Score=138.57 Aligned_cols=82 Identities=23% Similarity=0.292 Sum_probs=75.7
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecC-
Q 029300 6 KSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG- 84 (195)
Q Consensus 6 ~~~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g- 84 (195)
..+|++....++|||+|||+.+++++|+++|.+||.|..|.|+.+ |||||+|.+.++|++||+.|||..|.|
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 78 (108)
T 1x4c_A 6 SGGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 78 (108)
T ss_dssp CSSCCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECT
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCC
Confidence 345666677899999999999999999999999999999999875 899999999999999999999999999
Q ss_pred ----cEEEEEeccc
Q 029300 85 ----REITVQFAKY 94 (195)
Q Consensus 85 ----~~l~v~~a~~ 94 (195)
+.|.|.++++
T Consensus 79 ~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 79 EGETAYIRVKVDGP 92 (108)
T ss_dssp TSCEEEEEEEESSC
T ss_pred cCcceEEEEEeCCC
Confidence 9999999974
No 8
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=1.8e-23 Score=140.84 Aligned_cols=89 Identities=48% Similarity=0.809 Sum_probs=83.1
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEE
Q 029300 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (195)
Q Consensus 8 ~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 87 (195)
.++...+.++|||+|||+.+++++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 45566778999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEEecccCC
Q 029300 88 TVQFAKYGP 96 (195)
Q Consensus 88 ~v~~a~~~~ 96 (195)
.|.+++...
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2dnm_A 86 RVQVARYGR 94 (103)
T ss_dssp EEEECSSCC
T ss_pred EEEECCcCC
Confidence 999998643
No 9
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=4.5e-23 Score=136.49 Aligned_cols=85 Identities=33% Similarity=0.502 Sum_probs=79.6
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
+....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|.|+.|.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34456678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEecc
Q 029300 89 VQFAK 93 (195)
Q Consensus 89 v~~a~ 93 (195)
|+||+
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 10
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.90 E-value=8.7e-24 Score=140.26 Aligned_cols=86 Identities=28% Similarity=0.456 Sum_probs=78.5
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCc--eeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCc----ee
Q 029300 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGK--VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR----VV 82 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~--i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~----~~ 82 (195)
+.......+|||+|||+.+|+++|.++|++||. |..|.|+.++.+|.++|||||+|.+.++|++||+.|||. .|
T Consensus 3 ~~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i 82 (95)
T 2lkz_A 3 HHHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI 82 (95)
T ss_dssp CCSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE
T ss_pred cccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE
Confidence 444556789999999999999999999999995 678999999999999999999999999999999999997 58
Q ss_pred cCcEEEEEeccc
Q 029300 83 DGREITVQFAKY 94 (195)
Q Consensus 83 ~g~~l~v~~a~~ 94 (195)
+|++|.|+||+.
T Consensus 83 ~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 DGKTIGVDFAKS 94 (95)
T ss_dssp TTEEEEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 999999999974
No 11
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=4.3e-23 Score=136.77 Aligned_cols=88 Identities=35% Similarity=0.536 Sum_probs=81.5
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcE
Q 029300 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (195)
Q Consensus 7 ~~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 86 (195)
.......+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.
T Consensus 7 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (95)
T 2cqc_A 7 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 86 (95)
T ss_dssp CCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34445566789999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred EEEEeccc
Q 029300 87 ITVQFAKY 94 (195)
Q Consensus 87 l~v~~a~~ 94 (195)
|.|.|++.
T Consensus 87 l~v~~a~~ 94 (95)
T 2cqc_A 87 IRVSGPSS 94 (95)
T ss_dssp EEEECCSC
T ss_pred EEEEecCC
Confidence 99999874
No 12
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.90 E-value=5.8e-24 Score=140.21 Aligned_cols=83 Identities=20% Similarity=0.416 Sum_probs=76.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhC-CceecCcEEEEEec
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD-GRVVDGREITVQFA 92 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~-g~~~~g~~l~v~~a 92 (195)
+++|||+|||+.+|+++|.++|++|| .|..|.|+.++.+|.++|||||+|.+.++|++||+.|+ +..|+|++|.|+||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 89999999999999999999999999999999999874 56799999999999
Q ss_pred ccCCC
Q 029300 93 KYGPN 97 (195)
Q Consensus 93 ~~~~~ 97 (195)
.+.+.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 13
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.90 E-value=2.6e-23 Score=135.66 Aligned_cols=84 Identities=24% Similarity=0.510 Sum_probs=77.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.|++.|||..|+|+.|.|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 34789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCC
Q 029300 93 KYGP 96 (195)
Q Consensus 93 ~~~~ 96 (195)
+++|
T Consensus 84 ~~kp 87 (87)
T 3bs9_A 84 TRKP 87 (87)
T ss_dssp C---
T ss_pred CCCC
Confidence 8653
No 14
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.90 E-value=7.6e-23 Score=139.43 Aligned_cols=92 Identities=23% Similarity=0.421 Sum_probs=84.6
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhC------C
Q 029300 6 KSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD------G 79 (195)
Q Consensus 6 ~~~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~------g 79 (195)
...++...+.++|||+|||+.+++++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|| +
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 85 (111)
T 1x4h_A 6 SGLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG 85 (111)
T ss_dssp CCCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred CCCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence 3455666778999999999999999999999999999999999998899999999999999999999999999 9
Q ss_pred ceecCcEEEEEecccCCC
Q 029300 80 RVVDGREITVQFAKYGPN 97 (195)
Q Consensus 80 ~~~~g~~l~v~~a~~~~~ 97 (195)
..|+|+.|.|.++.+...
T Consensus 86 ~~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 86 LKLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp EESSSCEEEEECCCCCCC
T ss_pred cEEcCEEEEEEECCCCcc
Confidence 999999999999986543
No 15
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.90 E-value=6.6e-23 Score=136.99 Aligned_cols=86 Identities=30% Similarity=0.541 Sum_probs=80.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
..+.++|||+|||+.+++++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 029300 92 AKYGPN 97 (195)
Q Consensus 92 a~~~~~ 97 (195)
+++.+.
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 986544
No 16
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=1.3e-22 Score=139.54 Aligned_cols=91 Identities=27% Similarity=0.491 Sum_probs=82.9
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcE
Q 029300 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (195)
Q Consensus 7 ~~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 86 (195)
..+....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+ .|.|+.
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~ 87 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRK 87 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEE
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEE
Confidence 3455566789999999999999999999999999999999999988999999999999999999999999998 899999
Q ss_pred EEEEecccCCCc
Q 029300 87 ITVQFAKYGPNA 98 (195)
Q Consensus 87 l~v~~a~~~~~~ 98 (195)
|.|.++......
T Consensus 88 l~V~~a~~~~~~ 99 (116)
T 2cqd_A 88 ANVNLAYLGAKP 99 (116)
T ss_dssp CEEEESTTTCCC
T ss_pred EEEEEcccCCCc
Confidence 999999765443
No 17
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=8e-23 Score=136.62 Aligned_cols=88 Identities=20% Similarity=0.352 Sum_probs=81.1
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
++...+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+ ||+..|+|+.|.
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 3445667899999999999999999999999999999999998899999999999999999999999 999999999999
Q ss_pred EEecccCCC
Q 029300 89 VQFAKYGPN 97 (195)
Q Consensus 89 v~~a~~~~~ 97 (195)
|.++++...
T Consensus 83 V~~a~~~~~ 91 (99)
T 2dgs_A 83 VKRAEPRDS 91 (99)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCcc
Confidence 999986543
No 18
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.90 E-value=5.4e-23 Score=132.97 Aligned_cols=82 Identities=27% Similarity=0.516 Sum_probs=78.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
+++|||+|||..+++++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.|++.|||..|+|+.|.|.++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999999988999999999999999999999999999999999999999986
Q ss_pred CC
Q 029300 95 GP 96 (195)
Q Consensus 95 ~~ 96 (195)
.+
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 19
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=5.7e-23 Score=138.33 Aligned_cols=86 Identities=28% Similarity=0.530 Sum_probs=81.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
...+.++|||+|||..+++++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45667899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecccCC
Q 029300 91 FAKYGP 96 (195)
Q Consensus 91 ~a~~~~ 96 (195)
|+++..
T Consensus 91 ~a~~~~ 96 (103)
T 2cq0_A 91 WAKPST 96 (103)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998654
No 20
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=3e-23 Score=140.36 Aligned_cols=89 Identities=29% Similarity=0.545 Sum_probs=82.4
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEE
Q 029300 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (195)
Q Consensus 8 ~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 87 (195)
.+....++++|||+|||..+++++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|
T Consensus 16 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 95 (106)
T 1p27_B 16 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 95 (106)
T ss_dssp CBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 34445667899999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEecccCC
Q 029300 88 TVQFAKYGP 96 (195)
Q Consensus 88 ~v~~a~~~~ 96 (195)
.|.++++.+
T Consensus 96 ~V~~a~~~~ 104 (106)
T 1p27_B 96 SVDWCFVRG 104 (106)
T ss_dssp EEEESEESS
T ss_pred EEEeecCCC
Confidence 999998654
No 21
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=5.1e-23 Score=138.29 Aligned_cols=87 Identities=30% Similarity=0.421 Sum_probs=81.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|.|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecccCCC
Q 029300 91 FAKYGPN 97 (195)
Q Consensus 91 ~a~~~~~ 97 (195)
|+++...
T Consensus 88 ~a~~~~~ 94 (102)
T 2cqb_A 88 LAKPMRI 94 (102)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9986543
No 22
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.89 E-value=5.6e-23 Score=139.97 Aligned_cols=90 Identities=29% Similarity=0.498 Sum_probs=83.4
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcE
Q 029300 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (195)
Q Consensus 7 ~~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 86 (195)
+.|+...++++|||+|||..+++++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||..|||..|+|+.
T Consensus 18 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 18 PGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 44555567889999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEEEecccCC
Q 029300 87 ITVQFAKYGP 96 (195)
Q Consensus 87 l~v~~a~~~~ 96 (195)
|.|.|+.+.+
T Consensus 98 l~V~~a~~~~ 107 (110)
T 1oo0_B 98 IQVDWCFVKG 107 (110)
T ss_dssp CEEEESEESS
T ss_pred EEEEEcccCC
Confidence 9999998654
No 23
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=6.8e-23 Score=140.22 Aligned_cols=87 Identities=30% Similarity=0.445 Sum_probs=81.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCcee--------EEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCcee
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVV--------DVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~--------~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 82 (195)
...+.++|||+|||+.+++++|+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|+.||+.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456788999999999999999999999999998 699999988999999999999999999999999999999
Q ss_pred cCcEEEEEecccCCC
Q 029300 83 DGREITVQFAKYGPN 97 (195)
Q Consensus 83 ~g~~l~v~~a~~~~~ 97 (195)
.|+.|.|.+++....
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999986543
No 24
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=5e-23 Score=138.31 Aligned_cols=87 Identities=36% Similarity=0.593 Sum_probs=81.3
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEE
Q 029300 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (195)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 89 (195)
....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|.|+.|.|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34556789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EecccCC
Q 029300 90 QFAKYGP 96 (195)
Q Consensus 90 ~~a~~~~ 96 (195)
.+++...
T Consensus 87 ~~a~~~~ 93 (102)
T 1x5s_A 87 DQAGKSS 93 (102)
T ss_dssp EEEECCC
T ss_pred EECCCCC
Confidence 9998654
No 25
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=1.3e-22 Score=137.47 Aligned_cols=90 Identities=29% Similarity=0.535 Sum_probs=82.8
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccC-CCCCCcccEEEEEEccHHHHHHHHHhh-CCceecCc
Q 029300 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRD-RRTGDSRGFAFVRYKYADEAQKAVDRL-DGRVVDGR 85 (195)
Q Consensus 8 ~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~-~~~g~~~g~afV~f~~~~~a~~a~~~l-~g~~~~g~ 85 (195)
.++...+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ +.++.++|||||+|.+.++|+.||+.| |+..|.|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 8 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred ccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 3445567889999999999999999999999999999999988 778999999999999999999999999 99999999
Q ss_pred EEEEEecccCCC
Q 029300 86 EITVQFAKYGPN 97 (195)
Q Consensus 86 ~l~v~~a~~~~~ 97 (195)
.|.|.|+++...
T Consensus 88 ~l~v~~a~~~~~ 99 (107)
T 2cph_A 88 RLVLEWADSEVT 99 (107)
T ss_dssp BCEEEECCCCCC
T ss_pred EEEEEeCCCCCC
Confidence 999999986543
No 26
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=9.9e-23 Score=135.09 Aligned_cols=84 Identities=27% Similarity=0.525 Sum_probs=79.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|.|+.|.|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 46899999999999999999999999999999999998889999999999999999999999999999999999999997
Q ss_pred cCCC
Q 029300 94 YGPN 97 (195)
Q Consensus 94 ~~~~ 97 (195)
....
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 6543
No 27
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=139.55 Aligned_cols=84 Identities=29% Similarity=0.497 Sum_probs=78.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
..+.++|||+|||..+++++|.++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred cccCC
Q 029300 92 AKYGP 96 (195)
Q Consensus 92 a~~~~ 96 (195)
++...
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 97543
No 28
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.89 E-value=7.6e-23 Score=132.85 Aligned_cols=81 Identities=32% Similarity=0.509 Sum_probs=77.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
.+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.|++.|||..|+|+.|.|+|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred c
Q 029300 93 K 93 (195)
Q Consensus 93 ~ 93 (195)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 29
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.89 E-value=9.6e-24 Score=145.05 Aligned_cols=80 Identities=24% Similarity=0.343 Sum_probs=64.1
Q ss_pred CCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecC
Q 029300 5 GKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (195)
Q Consensus 5 ~~~~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 84 (195)
+..+|+.....++|||+|||+.+++++|+++|.+||+|..|.|+.+ |||||+|.+.++|++||+.|||..|+|
T Consensus 6 ~r~gpp~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g 78 (115)
T 3beg_B 6 GRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRS 78 (115)
T ss_dssp -----------CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCC
T ss_pred CCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3456666677899999999999999999999999999999999765 899999999999999999999999999
Q ss_pred cEEEEEe
Q 029300 85 REITVQF 91 (195)
Q Consensus 85 ~~l~v~~ 91 (195)
+.|+|.+
T Consensus 79 r~~~~~~ 85 (115)
T 3beg_B 79 HEGETAY 85 (115)
T ss_dssp TTSCCCB
T ss_pred cEeeeEE
Confidence 9844433
No 30
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2.1e-22 Score=134.80 Aligned_cols=85 Identities=26% Similarity=0.494 Sum_probs=79.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
...+.++|||+|||+.+++++|.++|.+||.|..|.|+.++ ++.++|||||+|.+.++|+.||+.|||..|+|+.|.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred ecccCC
Q 029300 91 FAKYGP 96 (195)
Q Consensus 91 ~a~~~~ 96 (195)
++++.+
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 998654
No 31
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=135.99 Aligned_cols=86 Identities=26% Similarity=0.397 Sum_probs=80.1
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeE--------EEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCC
Q 029300 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVD--------VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (195)
Q Consensus 8 ~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~--------v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g 79 (195)
.++.....++|||+|||..+++++|+++|.+||.|.. |.|+.++.+|.++|||||+|.+.++|+.||+.|||
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3445566889999999999999999999999999999 99999988999999999999999999999999999
Q ss_pred ceecCcEEEEEecc
Q 029300 80 RVVDGREITVQFAK 93 (195)
Q Consensus 80 ~~~~g~~l~v~~a~ 93 (195)
..|.|+.|.|++|+
T Consensus 86 ~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFSGNPIKVSFAT 99 (99)
T ss_dssp CBSSSSBCEEEECC
T ss_pred CEeCCcEEEEEecC
Confidence 99999999999984
No 32
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.89 E-value=1.8e-22 Score=134.14 Aligned_cols=84 Identities=20% Similarity=0.420 Sum_probs=79.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
+++|||+|||..+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|+.|++.|||..|+|+.|.|.++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57899999999999999999999999999999999988899999999999999999999999999999999999999987
Q ss_pred CCCc
Q 029300 95 GPNA 98 (195)
Q Consensus 95 ~~~~ 98 (195)
.+..
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 6543
No 33
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=2.7e-22 Score=135.23 Aligned_cols=87 Identities=17% Similarity=0.364 Sum_probs=79.6
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCC-CCcccEEEEEEccHHHHHHHHHhhCCceecCcEE
Q 029300 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRT-GDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~-g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 87 (195)
+.+..+.++|||+|||+.+++++|+++|.+|| |..|.|+.++.+ +.++|||||+|.+.++|++|| .||+..|.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 44456678999999999999999999999999 999999998877 899999999999999999999 899999999999
Q ss_pred EEEecccCCC
Q 029300 88 TVQFAKYGPN 97 (195)
Q Consensus 88 ~v~~a~~~~~ 97 (195)
.|.++++...
T Consensus 87 ~V~~a~~~~~ 96 (104)
T 1wi8_A 87 RVDVADQAQD 96 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 9999986543
No 34
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.89 E-value=1.4e-22 Score=137.30 Aligned_cols=85 Identities=29% Similarity=0.499 Sum_probs=79.1
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEE
Q 029300 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (195)
Q Consensus 8 ~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 87 (195)
+++...+.++|||+|||+.+++++|+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|++||+.|||..|.|+.|
T Consensus 22 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 100 (107)
T 3ulh_A 22 GGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 100 (107)
T ss_dssp --CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 45566778999999999999999999999999999999999988 89999999999999999999999999999999999
Q ss_pred EEEecc
Q 029300 88 TVQFAK 93 (195)
Q Consensus 88 ~v~~a~ 93 (195)
.|+++.
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999985
No 35
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.89 E-value=1.1e-22 Score=139.62 Aligned_cols=85 Identities=24% Similarity=0.383 Sum_probs=79.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|.|+.|.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCC
Q 029300 92 AKYGP 96 (195)
Q Consensus 92 a~~~~ 96 (195)
+++..
T Consensus 102 a~~~~ 106 (115)
T 2cpz_A 102 KRSKN 106 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 97654
No 36
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.89 E-value=1.4e-22 Score=147.77 Aligned_cols=91 Identities=29% Similarity=0.490 Sum_probs=81.9
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcE
Q 029300 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (195)
Q Consensus 7 ~~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 86 (195)
+.|....++++|||+|||+.+++++|..+|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||..|||..|.|+.
T Consensus 64 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 143 (165)
T 1rk8_A 64 PGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 143 (165)
T ss_dssp --CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34555667889999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEEEecccCCC
Q 029300 87 ITVQFAKYGPN 97 (195)
Q Consensus 87 l~v~~a~~~~~ 97 (195)
|.|.|+...+.
T Consensus 144 l~V~~a~~~~~ 154 (165)
T 1rk8_A 144 IQVDWCFVKGP 154 (165)
T ss_dssp CEEEESEECC-
T ss_pred EEEEEecCCCC
Confidence 99999986543
No 37
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=7.1e-22 Score=135.26 Aligned_cols=87 Identities=24% Similarity=0.337 Sum_probs=79.8
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
.......++|||+|||..+++++|+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|+.||+.|||..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 3445667899999999999999999999999999999999887 688999999999999999999999999999999999
Q ss_pred EEecccCC
Q 029300 89 VQFAKYGP 96 (195)
Q Consensus 89 v~~a~~~~ 96 (195)
|.+++...
T Consensus 88 v~~a~~~~ 95 (114)
T 2do0_A 88 VKMDERAL 95 (114)
T ss_dssp EEECSCCC
T ss_pred EEEcccCC
Confidence 99997543
No 38
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.3e-22 Score=134.78 Aligned_cols=83 Identities=25% Similarity=0.481 Sum_probs=78.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEE-EeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDV-FIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v-~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
++++|||+|||+.+++++|.++|.+||.|..| .|+.++.++.++|||||+|.+.++|+.||+.|||..|.|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46899999999999999999999999999999 99998889999999999999999999999999999999999999999
Q ss_pred ccCC
Q 029300 93 KYGP 96 (195)
Q Consensus 93 ~~~~ 96 (195)
.+..
T Consensus 84 ~~~~ 87 (96)
T 1x5t_A 84 FKKD 87 (96)
T ss_dssp CCCC
T ss_pred cccC
Confidence 7654
No 39
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.89 E-value=3.7e-22 Score=134.33 Aligned_cols=86 Identities=24% Similarity=0.442 Sum_probs=79.4
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
+.+..+.++|||+|||+.+++++|+++|.+|| |..|.|+.++.++.++|||||+|.+.++|+.|| .|||..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 44456678999999999999999999999997 999999999889999999999999999999999 7999999999999
Q ss_pred EEecccCC
Q 029300 89 VQFAKYGP 96 (195)
Q Consensus 89 v~~a~~~~ 96 (195)
|.++++..
T Consensus 87 V~~a~~~~ 94 (103)
T 2dng_A 87 VDIAEGRK 94 (103)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99997644
No 40
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.88 E-value=1.8e-22 Score=136.51 Aligned_cols=89 Identities=30% Similarity=0.403 Sum_probs=81.7
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCcee---cC
Q 029300 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV---DG 84 (195)
Q Consensus 8 ~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~---~g 84 (195)
.+....+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..+ .|
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 344456688999999999999999999999999999999999988999999999999999999999999999988 89
Q ss_pred cEEEEEecccCC
Q 029300 85 REITVQFAKYGP 96 (195)
Q Consensus 85 ~~l~v~~a~~~~ 96 (195)
+.|.|.++....
T Consensus 86 ~~l~v~~a~~~~ 97 (106)
T 2dgp_A 86 RPIQVKPADSES 97 (106)
T ss_dssp SCCEEEECCCCS
T ss_pred ceEEEEECCccc
Confidence 999999997643
No 41
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=8.5e-22 Score=132.54 Aligned_cols=88 Identities=35% Similarity=0.545 Sum_probs=79.1
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEE
Q 029300 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (195)
Q Consensus 8 ~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 87 (195)
.+....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++. .++|||||+|.+.++|+.||..|||..|+|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 8 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 344556678999999999999999999999999999999988753 378999999999999999999999999999999
Q ss_pred EEEecccCCC
Q 029300 88 TVQFAKYGPN 97 (195)
Q Consensus 88 ~v~~a~~~~~ 97 (195)
.|.++++.+.
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cq3_A 86 EVNNATARVM 95 (103)
T ss_dssp EEEECCSSCC
T ss_pred EEEEcccCCC
Confidence 9999986544
No 42
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=6.3e-22 Score=134.56 Aligned_cols=86 Identities=27% Similarity=0.405 Sum_probs=77.0
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEE
Q 029300 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (195)
Q Consensus 8 ~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 87 (195)
.++...+.++|||+|||+.+++++|+++|.+||.|..|.|+. ++.++|||||+|.+.++|+.||+.||+..|+|+.|
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 91 (109)
T 1x4a_A 15 RGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRL 91 (109)
T ss_dssp SCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 344556678999999999999999999999999999999965 34578999999999999999999999999999999
Q ss_pred EEEecccCC
Q 029300 88 TVQFAKYGP 96 (195)
Q Consensus 88 ~v~~a~~~~ 96 (195)
.|+|++...
T Consensus 92 ~V~~a~~~~ 100 (109)
T 1x4a_A 92 RVEFPRSGR 100 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEEcccCC
Confidence 999997643
No 43
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.88 E-value=1.3e-22 Score=142.16 Aligned_cols=87 Identities=37% Similarity=0.579 Sum_probs=81.2
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEE
Q 029300 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (195)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 89 (195)
....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++..+|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EecccCC
Q 029300 90 QFAKYGP 96 (195)
Q Consensus 90 ~~a~~~~ 96 (195)
.|+++++
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9997654
No 44
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=3.5e-22 Score=134.42 Aligned_cols=84 Identities=26% Similarity=0.430 Sum_probs=78.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ ++..+|||||+|.+.++|+.||+.|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456889999999999999999999999999999999887 78899999999999999999999999999999999999
Q ss_pred ecccCC
Q 029300 91 FAKYGP 96 (195)
Q Consensus 91 ~a~~~~ 96 (195)
|+++..
T Consensus 89 ~a~~~~ 94 (103)
T 2d9p_A 89 LAQRKE 94 (103)
T ss_dssp ECSSCC
T ss_pred Eecccc
Confidence 998654
No 45
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.88 E-value=1.8e-22 Score=137.16 Aligned_cols=87 Identities=26% Similarity=0.469 Sum_probs=81.0
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
+....+.++|||+|||..+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 33455678999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred EEecccC
Q 029300 89 VQFAKYG 95 (195)
Q Consensus 89 v~~a~~~ 95 (195)
|.++++.
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9999764
No 46
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.88 E-value=2.7e-23 Score=136.63 Aligned_cols=82 Identities=26% Similarity=0.377 Sum_probs=72.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCC--ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYG--KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G--~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
.+|||+|||+.+++++|+++|++|| .|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999998899999999999999999999999999999999999999998
Q ss_pred cCCC
Q 029300 94 YGPN 97 (195)
Q Consensus 94 ~~~~ 97 (195)
+.+.
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7654
No 47
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.88 E-value=2e-22 Score=133.60 Aligned_cols=85 Identities=28% Similarity=0.439 Sum_probs=78.0
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
+....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++. +.++|||||+|.+.++|+.||+.|||..|.|+.|.
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 44556678999999999999999999999999999999998874 88999999999999999999999999999999999
Q ss_pred EEeccc
Q 029300 89 VQFAKY 94 (195)
Q Consensus 89 v~~a~~ 94 (195)
|.+++.
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999864
No 48
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.88 E-value=4e-22 Score=130.07 Aligned_cols=84 Identities=35% Similarity=0.528 Sum_probs=76.3
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEE
Q 029300 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (195)
Q Consensus 8 ~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 87 (195)
.++...+.++|||+|||+.+++++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+ +++..|+|+.|
T Consensus 4 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i 82 (87)
T 3s7r_A 4 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVI 82 (87)
T ss_dssp ---CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEE
Confidence 34455678899999999999999999999999999999999998899999999999999999999997 58899999999
Q ss_pred EEEec
Q 029300 88 TVQFA 92 (195)
Q Consensus 88 ~v~~a 92 (195)
.|.+|
T Consensus 83 ~v~~A 87 (87)
T 3s7r_A 83 DPKKA 87 (87)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99886
No 49
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.88 E-value=6e-22 Score=133.70 Aligned_cols=84 Identities=26% Similarity=0.441 Sum_probs=78.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecC---cEEEE
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG---REITV 89 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g---~~l~v 89 (195)
.+.++|||+|||..+++++|.++|.+||.|..|.|+.++ ++.++|||||+|.+.++|+.||+.|||..|.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457899999999999999999999999999999999887 78999999999999999999999999999988 99999
Q ss_pred EecccCCC
Q 029300 90 QFAKYGPN 97 (195)
Q Consensus 90 ~~a~~~~~ 97 (195)
.|++..+.
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99986543
No 50
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.1e-21 Score=131.91 Aligned_cols=86 Identities=21% Similarity=0.322 Sum_probs=77.9
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
+....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.+ .+|||||+|.+.++|+.||+.|||..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 344566789999999999999999999999999999999987533 679999999999999999999999999999999
Q ss_pred EEecccCC
Q 029300 89 VQFAKYGP 96 (195)
Q Consensus 89 v~~a~~~~ 96 (195)
|.|+++..
T Consensus 87 V~~a~~~~ 94 (103)
T 2cqi_A 87 VNWATTPS 94 (103)
T ss_dssp EEECCCTT
T ss_pred EEECCCCc
Confidence 99998644
No 51
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=2.6e-22 Score=134.11 Aligned_cols=85 Identities=24% Similarity=0.384 Sum_probs=79.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCcee-EEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcE----
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVV-DVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE---- 86 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~-~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~---- 86 (195)
..+.++|||+|||+.+++++|+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|+.||+.|||..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34578999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred EEEEecccCC
Q 029300 87 ITVQFAKYGP 96 (195)
Q Consensus 87 l~v~~a~~~~ 96 (195)
|.|.|+++..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999997643
No 52
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.88 E-value=2.8e-22 Score=138.18 Aligned_cols=82 Identities=27% Similarity=0.419 Sum_probs=77.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|.|+|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45568999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cc
Q 029300 92 AK 93 (195)
Q Consensus 92 a~ 93 (195)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 84
No 53
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.88 E-value=3.1e-22 Score=131.91 Aligned_cols=86 Identities=24% Similarity=0.404 Sum_probs=78.8
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
+....+.++|||+|||..+++++|+++|.+||.|..|.|+.+ ++.++|||||+|.+.++|+.||+.|||..|+|+.|.
T Consensus 2 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 79 (92)
T 2dgv_A 2 SSGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREID 79 (92)
T ss_dssp CCSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 444566889999999999999999999999999999999874 788999999999999999999999999999999999
Q ss_pred EEecccCC
Q 029300 89 VQFAKYGP 96 (195)
Q Consensus 89 v~~a~~~~ 96 (195)
|.++++..
T Consensus 80 v~~a~~~~ 87 (92)
T 2dgv_A 80 VRIDRNAS 87 (92)
T ss_dssp CEECSCCS
T ss_pred EEEcCCCC
Confidence 99997654
No 54
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.88 E-value=5.2e-22 Score=143.33 Aligned_cols=84 Identities=26% Similarity=0.473 Sum_probs=79.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
.+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|.|+.|.|+|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCC
Q 029300 93 KYGP 96 (195)
Q Consensus 93 ~~~~ 96 (195)
++..
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8643
No 55
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=3.3e-22 Score=137.36 Aligned_cols=81 Identities=19% Similarity=0.464 Sum_probs=74.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
.++|||+|||+.+++++|.++|.+||.|..|.|+.+. +.++|||||+|.+.++|+.||+.|||..|+|+.|.|.+++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5689999999999999999999999999999998874 44789999999999999999999999999999999999976
Q ss_pred CCC
Q 029300 95 GPN 97 (195)
Q Consensus 95 ~~~ 97 (195)
...
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 56
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=2.9e-22 Score=133.61 Aligned_cols=83 Identities=33% Similarity=0.558 Sum_probs=77.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCC---CCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRR---TGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~---~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
+.++|||+|||+.+++++|+++|.+||.|..|.|+.++. ++.++|||||+|.+.++|+.||+.|||..|.|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 467899999999999999999999999999999988765 55889999999999999999999999999999999999
Q ss_pred ecccCC
Q 029300 91 FAKYGP 96 (195)
Q Consensus 91 ~a~~~~ 96 (195)
+++...
T Consensus 84 ~a~~~~ 89 (98)
T 2cpf_A 84 ISERAT 89 (98)
T ss_dssp CSSCSS
T ss_pred EccCCC
Confidence 997654
No 57
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=7.7e-22 Score=131.19 Aligned_cols=83 Identities=23% Similarity=0.256 Sum_probs=76.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHH----HHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEE
Q 029300 12 IRDTYSLLVLNITFRTTADDLF----PLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~----~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 87 (195)
..+.++|||+|||+.+++++|+ ++|.+||.|..|.|+.++.+ +|||||+|.+.++|+.||+.|||..|+|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4457899999999999999999 99999999999999988654 7899999999999999999999999999999
Q ss_pred EEEecccCCC
Q 029300 88 TVQFAKYGPN 97 (195)
Q Consensus 88 ~v~~a~~~~~ 97 (195)
.|.++++.+.
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999976543
No 58
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.88 E-value=1.3e-21 Score=131.69 Aligned_cols=83 Identities=28% Similarity=0.460 Sum_probs=75.2
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcE
Q 029300 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (195)
Q Consensus 7 ~~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 86 (195)
.++....+.++|||+|||+.+++++|+++|.+||.|..|.|+. +||||+|.+.++|++||+.||+..|.|+.
T Consensus 3 ~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (103)
T 2dgu_A 3 SGSSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGEN 74 (103)
T ss_dssp CCCCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCE
Confidence 4555566788999999999999999999999999999999863 69999999999999999999999999999
Q ss_pred EEEEecccCCC
Q 029300 87 ITVQFAKYGPN 97 (195)
Q Consensus 87 l~v~~a~~~~~ 97 (195)
|.|.|+++...
T Consensus 75 l~v~~a~~~~~ 85 (103)
T 2dgu_A 75 IEIVFAKPPDQ 85 (103)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEcCCCcc
Confidence 99999986544
No 59
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.87 E-value=3.6e-22 Score=130.42 Aligned_cols=82 Identities=30% Similarity=0.536 Sum_probs=76.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCC-cccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGD-SRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~-~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
..++|||+|||..+++++|.++|.+||.|..|.|+.+..++. .+|||||+|.+.++|+.|++.|||..|+|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467899999999999999999999999999999988876655 8899999999999999999999999999999999999
Q ss_pred ccC
Q 029300 93 KYG 95 (195)
Q Consensus 93 ~~~ 95 (195)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 60
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.87 E-value=7.5e-23 Score=137.15 Aligned_cols=81 Identities=27% Similarity=0.410 Sum_probs=77.6
Q ss_pred CCcEEEEeCCCC------CCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecC-cE
Q 029300 14 DTYSLLVLNITF------RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG-RE 86 (195)
Q Consensus 14 ~~~~l~V~nLp~------~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g-~~ 86 (195)
.+++|||+|||. .+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 367999999999 99999999999999999999999999899999999999999999999999999999999 99
Q ss_pred EEEEeccc
Q 029300 87 ITVQFAKY 94 (195)
Q Consensus 87 l~v~~a~~ 94 (195)
|.|.++.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999975
No 61
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=3.7e-22 Score=134.49 Aligned_cols=86 Identities=24% Similarity=0.376 Sum_probs=79.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhc-CCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCce-ecCcEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEK-YGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV-VDGREIT 88 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~-~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~-~~g~~l~ 88 (195)
+..+.++|||+|||+.+++++|.++|.+ ||.|..|.|+.++ ++.++|||||+|.+.++|+.||+.|||.. |+|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4456789999999999999999999999 9999999999998 89999999999999999999999999999 9999999
Q ss_pred EEecccCCC
Q 029300 89 VQFAKYGPN 97 (195)
Q Consensus 89 v~~a~~~~~ 97 (195)
|.++.....
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999976543
No 62
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.87 E-value=7.4e-22 Score=139.82 Aligned_cols=86 Identities=31% Similarity=0.460 Sum_probs=80.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
.....++|||+|||..+++++|.++|..||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|.|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34556899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred ecccCC
Q 029300 91 FAKYGP 96 (195)
Q Consensus 91 ~a~~~~ 96 (195)
+++...
T Consensus 118 ~a~~~~ 123 (139)
T 1u6f_A 118 LAASGH 123 (139)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998654
No 63
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=4.2e-22 Score=134.49 Aligned_cols=87 Identities=29% Similarity=0.461 Sum_probs=80.8
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
+....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||.. |+..|+|+.|.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 34456788999999999999999999999999999999999988999999999999999999999998 99999999999
Q ss_pred EEecccCC
Q 029300 89 VQFAKYGP 96 (195)
Q Consensus 89 v~~a~~~~ 96 (195)
|.++.+..
T Consensus 89 V~~a~~~~ 96 (105)
T 2dh8_A 89 PKPCTPRG 96 (105)
T ss_dssp CCCSCCSS
T ss_pred EEEccCCC
Confidence 99997654
No 64
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=3.7e-22 Score=133.08 Aligned_cols=84 Identities=21% Similarity=0.310 Sum_probs=77.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
....++|||+|||+.+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++||+.|||..|.|+.|.|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999998887777778899999999999999999999999999999999999999
Q ss_pred cccC
Q 029300 92 AKYG 95 (195)
Q Consensus 92 a~~~ 95 (195)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8743
No 65
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.87 E-value=1e-21 Score=128.59 Aligned_cols=80 Identities=28% Similarity=0.466 Sum_probs=76.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
.++|||+|||+.+++++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.|+ .|||..|.|+.|.|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 578999999999999999999999999999999999889999999999999999999999 8999999999999999976
Q ss_pred C
Q 029300 95 G 95 (195)
Q Consensus 95 ~ 95 (195)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 66
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.7e-21 Score=128.10 Aligned_cols=84 Identities=23% Similarity=0.395 Sum_probs=77.9
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEE
Q 029300 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (195)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 89 (195)
+.....++|||+|||+.+++++|+++|.+| .|..|.|+.+ .+|.++|||||+|.+.++|+.||. |||..|+|+.|.|
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 344567899999999999999999999999 9999999988 689999999999999999999999 9999999999999
Q ss_pred EecccCC
Q 029300 90 QFAKYGP 96 (195)
Q Consensus 90 ~~a~~~~ 96 (195)
.++...+
T Consensus 82 ~~a~~~~ 88 (91)
T 2dgw_A 82 FREKSGP 88 (91)
T ss_dssp EEESSCC
T ss_pred EECCcCC
Confidence 9998654
No 67
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.87 E-value=2.4e-21 Score=134.68 Aligned_cols=87 Identities=28% Similarity=0.450 Sum_probs=80.7
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEE
Q 029300 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (195)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 89 (195)
+....+++|||+|||..+++++|+++|.+||.|..|.|+.+. +|.++|||||+|.+.++|+.|+..|||..|+|+.|.|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345667899999999999999999999999999999999987 8999999999999999999999999999999999999
Q ss_pred EecccCCC
Q 029300 90 QFAKYGPN 97 (195)
Q Consensus 90 ~~a~~~~~ 97 (195)
.+|.....
T Consensus 109 ~~a~~~~~ 116 (124)
T 2kt5_A 109 QLVASQID 116 (124)
T ss_dssp EEECCTTC
T ss_pred EEeCCCCC
Confidence 99976543
No 68
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.8e-21 Score=132.19 Aligned_cols=85 Identities=24% Similarity=0.311 Sum_probs=78.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCc-eeEEEec-cCCCCCCcccEEEEEEccHHHHHHHHHhhC--CceecCcEEE
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGK-VVDVFIP-RDRRTGDSRGFAFVRYKYADEAQKAVDRLD--GRVVDGREIT 88 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~-i~~v~~~-~~~~~g~~~g~afV~f~~~~~a~~a~~~l~--g~~~~g~~l~ 88 (195)
.+.++|||+|||+.+++++|.++|.+||. |..|.|+ .+..++.++|||||+|.+.++|+.||..|| +..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 777788999999999999999999999996 5899999999
Q ss_pred EEecccCCC
Q 029300 89 VQFAKYGPN 97 (195)
Q Consensus 89 v~~a~~~~~ 97 (195)
|.|+++...
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987654
No 69
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-22 Score=137.14 Aligned_cols=89 Identities=33% Similarity=0.499 Sum_probs=81.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
.....++|||+|||..+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.|++.|||..|.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 33456799999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred ecccCCCch
Q 029300 91 FAKYGPNAE 99 (195)
Q Consensus 91 ~a~~~~~~~ 99 (195)
++.......
T Consensus 84 ~a~~~~~~~ 92 (104)
T 1p1t_A 84 NAASEKNKE 92 (104)
T ss_dssp ETTCTTHHH
T ss_pred eCCCccchh
Confidence 998765443
No 70
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.87 E-value=2.7e-22 Score=141.56 Aligned_cols=89 Identities=55% Similarity=0.929 Sum_probs=82.3
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
+++..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|.|+.|.
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44456678999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEecccCCC
Q 029300 89 VQFAKYGPN 97 (195)
Q Consensus 89 v~~a~~~~~ 97 (195)
|.|+++...
T Consensus 121 V~~a~~~~~ 129 (135)
T 2lea_A 121 VQMARYGRP 129 (135)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCCC
Confidence 999986543
No 71
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.2e-21 Score=133.74 Aligned_cols=86 Identities=21% Similarity=0.395 Sum_probs=78.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHH---HHhhcCCceeEEEeccCCCCC---CcccEEEEEEccHHHHHHHHHhhCCceecC
Q 029300 11 DIRDTYSLLVLNITFRTTADDLF---PLFEKYGKVVDVFIPRDRRTG---DSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~---~~f~~~G~i~~v~~~~~~~~g---~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 84 (195)
.....++|||+|||+.+++++|. ++|.+||.|..|.|+.+..++ .++|||||+|.+.++|++||+.|||..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34567899999999999999999 999999999999998877644 456999999999999999999999999999
Q ss_pred cEEEEEecccCC
Q 029300 85 REITVQFAKYGP 96 (195)
Q Consensus 85 ~~l~v~~a~~~~ 96 (195)
+.|.|.||++++
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998765
No 72
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4.6e-21 Score=128.94 Aligned_cols=87 Identities=29% Similarity=0.541 Sum_probs=79.0
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
+....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||. ++..|+|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 3445667899999999999999999999999999999999998889999999999999999999999 47899999999
Q ss_pred EEecccCCC
Q 029300 89 VQFAKYGPN 97 (195)
Q Consensus 89 v~~a~~~~~ 97 (195)
|.++.+...
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cqg_A 87 CKLPNSKQS 95 (103)
T ss_dssp EECCCTTCC
T ss_pred EEecCCCCc
Confidence 999976543
No 73
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.86 E-value=1e-21 Score=141.74 Aligned_cols=82 Identities=24% Similarity=0.419 Sum_probs=77.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCC--ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYG--KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G--~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
..++|||+|||+.+++++|.++|.+|| .|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 357999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 029300 92 AKYG 95 (195)
Q Consensus 92 a~~~ 95 (195)
+...
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9753
No 74
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.86 E-value=2.8e-21 Score=136.76 Aligned_cols=82 Identities=30% Similarity=0.489 Sum_probs=77.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
...+..+|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|.|+.|.|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ec
Q 029300 91 FA 92 (195)
Q Consensus 91 ~a 92 (195)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 75
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.2e-21 Score=131.92 Aligned_cols=81 Identities=20% Similarity=0.294 Sum_probs=75.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
.....+|||+|||+.+|+++|.++|++||.|..|.|+.++. |.++|||||+|.+.++|+.||. +||..|+|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999876 9999999999999999999999 899999999999999
Q ss_pred ccc
Q 029300 92 AKY 94 (195)
Q Consensus 92 a~~ 94 (195)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 864
No 76
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1e-21 Score=131.92 Aligned_cols=78 Identities=18% Similarity=0.330 Sum_probs=71.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhC--CceecCcEEEEEe
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD--GRVVDGREITVQF 91 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~--g~~~~g~~l~v~~ 91 (195)
+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|++.++|+.||+.|+ +..|.|++|.|.|
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4689999999999999999999999999999999865 4999999999999999999886 4789999999999
Q ss_pred cccCCC
Q 029300 92 AKYGPN 97 (195)
Q Consensus 92 a~~~~~ 97 (195)
++..+.
T Consensus 89 A~~~~~ 94 (105)
T 1sjq_A 89 SNHKEL 94 (105)
T ss_dssp CSSSSC
T ss_pred cCCCCC
Confidence 986543
No 77
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.86 E-value=4.5e-22 Score=131.87 Aligned_cols=81 Identities=22% Similarity=0.329 Sum_probs=75.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
..++|||+|||+.+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++||+.|||..|.|+.|.|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 46899999999999999999999999999888888877889999999999999999999999999999999999999986
Q ss_pred c
Q 029300 94 Y 94 (195)
Q Consensus 94 ~ 94 (195)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 78
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.8e-22 Score=136.19 Aligned_cols=80 Identities=29% Similarity=0.403 Sum_probs=76.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.|| .|||..|+|+.|.|.+++.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 469999999999999999999999999999999999888999999999999999999999 8999999999999999975
Q ss_pred C
Q 029300 95 G 95 (195)
Q Consensus 95 ~ 95 (195)
.
T Consensus 104 ~ 104 (114)
T 2cq4_A 104 E 104 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 79
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.86 E-value=5.2e-22 Score=133.00 Aligned_cols=84 Identities=19% Similarity=0.381 Sum_probs=74.5
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCC-CCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDR-RTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~-~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
+.....++|||+|||..+++++|+++|.+|| |..|.|+.++ .+|.++|||||+|.+.++|+.|| .|||..|+|+.|.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3446678999999999999999999999999 9999999887 58999999999999999999999 7999999999999
Q ss_pred EEecccC
Q 029300 89 VQFAKYG 95 (195)
Q Consensus 89 v~~a~~~ 95 (195)
|.+++..
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9999754
No 80
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.86 E-value=6.9e-22 Score=138.74 Aligned_cols=85 Identities=26% Similarity=0.440 Sum_probs=79.0
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeE--EEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCc----eec
Q 029300 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVD--VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR----VVD 83 (195)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~--v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~----~~~ 83 (195)
.......+|||+|||+.+++++|+++|.+||.|.. |.|+.++.+|.++|||||+|.+. +|+.||..|||. .|+
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34456789999999999999999999999999966 99999998999999999999999 999999999999 999
Q ss_pred CcEEEEEecccC
Q 029300 84 GREITVQFAKYG 95 (195)
Q Consensus 84 g~~l~v~~a~~~ 95 (195)
|+.|.|.++++.
T Consensus 97 gr~l~V~~a~~~ 108 (131)
T 2m2b_A 97 GKTINVEFAKGS 108 (131)
T ss_dssp GCCCCCEECCCS
T ss_pred CEEEEEEECCCC
Confidence 999999999764
No 81
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=4.9e-21 Score=127.42 Aligned_cols=81 Identities=27% Similarity=0.440 Sum_probs=73.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceec--CcEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD--GREIT 88 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~--g~~l~ 88 (195)
...+.++|||+|||+.+++++|+++|.+||.|..|.|..+ +|||||+|.+.++|+.|++.|||..|. |+.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 4455789999999999999999999999999999998754 489999999999999999999999999 99999
Q ss_pred EEecccCCC
Q 029300 89 VQFAKYGPN 97 (195)
Q Consensus 89 v~~a~~~~~ 97 (195)
|.|+++.+.
T Consensus 87 V~~a~~~~~ 95 (97)
T 1why_A 87 VDFAKSGPS 95 (97)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCCC
Confidence 999986543
No 82
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3e-22 Score=130.11 Aligned_cols=81 Identities=27% Similarity=0.370 Sum_probs=76.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
.++++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.|++.|||..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 34789999999999999999999999999999999999889999999999999999999999999999999999988775
Q ss_pred c
Q 029300 93 K 93 (195)
Q Consensus 93 ~ 93 (195)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 83
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.86 E-value=3e-21 Score=131.29 Aligned_cols=84 Identities=23% Similarity=0.365 Sum_probs=75.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
..+.++|||+|||..+++++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||..+ +..|+|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 355789999999999999999999999999999999999888999999999999999999999976 5999999999999
Q ss_pred cccCC
Q 029300 92 AKYGP 96 (195)
Q Consensus 92 a~~~~ 96 (195)
+.+..
T Consensus 101 a~~~~ 105 (109)
T 2rs2_A 101 AFPRR 105 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 97654
No 84
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=4.1e-21 Score=129.40 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=73.4
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCc--eecCc
Q 029300 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR--VVDGR 85 (195)
Q Consensus 8 ~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~--~~~g~ 85 (195)
.+....++.+|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|++.++|+.||+.|++. .|.|+
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr 81 (104)
T 1wex_A 8 SHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQ 81 (104)
T ss_dssp SCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSS
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 3444566789999999999999999999999999999998764 499999999999999999988754 58999
Q ss_pred EEEEEecccCCC
Q 029300 86 EITVQFAKYGPN 97 (195)
Q Consensus 86 ~l~v~~a~~~~~ 97 (195)
+|.|+|++....
T Consensus 82 ~l~V~~a~~~~~ 93 (104)
T 1wex_A 82 QAFFNYSTSKRI 93 (104)
T ss_dssp BCEEEECSSSSC
T ss_pred EEEEEEccCccc
Confidence 999999986443
No 85
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.86 E-value=4.5e-21 Score=138.57 Aligned_cols=85 Identities=54% Similarity=0.898 Sum_probs=80.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
....++|||+|||+.+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|.|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCC
Q 029300 92 AKYGP 96 (195)
Q Consensus 92 a~~~~ 96 (195)
+++..
T Consensus 147 a~~~~ 151 (158)
T 2kn4_A 147 ARYGR 151 (158)
T ss_dssp ECCSS
T ss_pred CCCCC
Confidence 98643
No 86
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.86 E-value=1.6e-21 Score=132.80 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=72.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
+...++|||+|||+.+++++|+++|.+|| .|..|.|... .++|||||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34578999999999999999999999999 8999988532 367999999999999999999999999999999999
Q ss_pred ecccCC
Q 029300 91 FAKYGP 96 (195)
Q Consensus 91 ~a~~~~ 96 (195)
++...+
T Consensus 101 ~a~~~p 106 (111)
T 2jvr_A 101 RDDNPP 106 (111)
T ss_dssp ESCC--
T ss_pred ECCCCC
Confidence 997544
No 87
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4.9e-21 Score=125.69 Aligned_cols=78 Identities=26% Similarity=0.407 Sum_probs=72.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
..+.++|||+|||..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|+.||+.||+..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4557899999999999999999999999999999987 38999999999999999999999999999999999
Q ss_pred cccCCC
Q 029300 92 AKYGPN 97 (195)
Q Consensus 92 a~~~~~ 97 (195)
++..+.
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 986543
No 88
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.86 E-value=2.1e-21 Score=135.35 Aligned_cols=88 Identities=20% Similarity=0.406 Sum_probs=77.1
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHH----HHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecC
Q 029300 9 PPDIRDTYSLLVLNITFRTTADDLF----PLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~~~~~~l~----~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 84 (195)
+++..++++|||+|||+.+++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|+.||..|||..|.|
T Consensus 23 ~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 23 PPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 3445668899999999999999876 6999999999988853 67789999999999999999999999999999
Q ss_pred cEEEEEecccCCCch
Q 029300 85 REITVQFAKYGPNAE 99 (195)
Q Consensus 85 ~~l~v~~a~~~~~~~ 99 (195)
++|.|.|++......
T Consensus 100 r~l~V~~a~~~~~~~ 114 (127)
T 2a3j_A 100 NPLVITFSETPQSQV 114 (127)
T ss_dssp SCCEEEECCCCCHHH
T ss_pred CEEEEEEccCcchhc
Confidence 999999998765433
No 89
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=7.6e-21 Score=127.40 Aligned_cols=83 Identities=23% Similarity=0.490 Sum_probs=74.1
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEE
Q 029300 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (195)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 89 (195)
+...+.++|||+|||+.+++++|+++|.+||.| .|+.+ .++..+|||||+|.+.++|++||+.|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 345568899999999999999999999999987 45555 57889999999999999999999999999999999999
Q ss_pred EecccCC
Q 029300 90 QFAKYGP 96 (195)
Q Consensus 90 ~~a~~~~ 96 (195)
.|+++.+
T Consensus 86 ~~a~~~~ 92 (101)
T 2fc9_A 86 ELQGPRG 92 (101)
T ss_dssp EECSSCC
T ss_pred EEcCCCC
Confidence 9997653
No 90
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=8.7e-21 Score=127.10 Aligned_cols=80 Identities=16% Similarity=0.231 Sum_probs=71.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhh--CCceecCcEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL--DGRVVDGREIT 88 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l--~g~~~~g~~l~ 88 (195)
...++++|||+|||+.+++++|.++|.+||.|..|.|+.+ +|||||+|++.++|+.|++.| ++..|.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3456789999999999999999999999999999988764 499999999999999999977 46789999999
Q ss_pred EEecccCC
Q 029300 89 VQFAKYGP 96 (195)
Q Consensus 89 v~~a~~~~ 96 (195)
|.|++...
T Consensus 85 V~~a~~~~ 92 (101)
T 2cq1_A 85 IQYSNHKE 92 (101)
T ss_dssp EEECSCSS
T ss_pred EEEcCccc
Confidence 99998544
No 91
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.6e-21 Score=133.61 Aligned_cols=83 Identities=24% Similarity=0.313 Sum_probs=77.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCce-eEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKV-VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i-~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
..+.++|||+|||+.+++++|+++|..||.| ..|.|+.++ +|.++|||||+|.+.++|+.||+. |+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4567899999999999999999999999999 889999988 899999999999999999999996 9999999999999
Q ss_pred ecccCC
Q 029300 91 FAKYGP 96 (195)
Q Consensus 91 ~a~~~~ 96 (195)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997544
No 92
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.1e-21 Score=129.04 Aligned_cols=84 Identities=21% Similarity=0.347 Sum_probs=76.7
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeE-EEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVD-VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~-v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
++....++|||+|||+.+++++|+++|.+||.|.. |.|+.+ .+|.++|||||+|.+.++|++||.. |+..|+|+.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 34566789999999999999999999999999987 888887 6899999999999999999999997 99999999999
Q ss_pred EEecccC
Q 029300 89 VQFAKYG 95 (195)
Q Consensus 89 v~~a~~~ 95 (195)
|.++...
T Consensus 88 v~~~~~~ 94 (104)
T 1wg5_A 88 IFKSSRA 94 (104)
T ss_dssp EEEECTT
T ss_pred EEECCHH
Confidence 9998643
No 93
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.86 E-value=4.1e-21 Score=127.77 Aligned_cols=79 Identities=14% Similarity=0.189 Sum_probs=71.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCce--ecCcEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV--VDGREIT 88 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~--~~g~~l~ 88 (195)
...++.+|||+|||..+++++|.++|++||.|..|.|+.. +|||||+|++.++|++|++.||+.. |.|++|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 3456789999999999999999999999999999998754 4899999999999999999999875 7899999
Q ss_pred EEecccC
Q 029300 89 VQFAKYG 95 (195)
Q Consensus 89 v~~a~~~ 95 (195)
|+|++.+
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9999754
No 94
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.86 E-value=3e-21 Score=130.44 Aligned_cols=82 Identities=23% Similarity=0.404 Sum_probs=75.1
Q ss_pred CCCCCcEEEEeCCCCCC------CHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecC
Q 029300 11 DIRDTYSLLVLNITFRT------TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~------~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 84 (195)
.....++|||+|||+.+ ++++|.++|++||.|..|.|+ ..+|.++|||||+|.+.++|+.||..|||..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34457899999999999 789999999999999999988 3588999999999999999999999999999999
Q ss_pred c-EEEEEeccc
Q 029300 85 R-EITVQFAKY 94 (195)
Q Consensus 85 ~-~l~v~~a~~ 94 (195)
+ .|.|.++..
T Consensus 89 ~~~l~V~~a~~ 99 (105)
T 2nlw_A 89 QHTFRVNLFTD 99 (105)
T ss_dssp TCEEEEECSCC
T ss_pred CceEEEEEcch
Confidence 8 999999864
No 95
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=9.9e-21 Score=124.74 Aligned_cols=81 Identities=28% Similarity=0.409 Sum_probs=73.6
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
++...+.++|||+|||+.+++++|+++|++||.|..|.|+. +||||+|.+.++|++|+..|||..|.|+.|.
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 34556688999999999999999999999999999999873 5999999999999999999999999999999
Q ss_pred EEecccCCC
Q 029300 89 VQFAKYGPN 97 (195)
Q Consensus 89 v~~a~~~~~ 97 (195)
|.++++.+.
T Consensus 76 V~~a~~~~~ 84 (92)
T 2dgt_A 76 VQLSTSRLR 84 (92)
T ss_dssp EEESSCCCS
T ss_pred EEEccCCCC
Confidence 999986543
No 96
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.5e-21 Score=129.81 Aligned_cols=79 Identities=19% Similarity=0.309 Sum_probs=71.2
Q ss_pred CCCCcEEEEeCCCC-CCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCc--eecCcEEE
Q 029300 12 IRDTYSLLVLNITF-RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR--VVDGREIT 88 (195)
Q Consensus 12 ~~~~~~l~V~nLp~-~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~--~~~g~~l~ 88 (195)
..++++|||+|||+ .+++++|.++|.+||.|..|.|+.++ |||||+|++.++|+.||+.||+. .|.|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34678999999999 99999999999999999999998654 89999999999999999998864 59999999
Q ss_pred EEecccCC
Q 029300 89 VQFAKYGP 96 (195)
Q Consensus 89 v~~a~~~~ 96 (195)
|+|++...
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99997543
No 97
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.1e-21 Score=131.93 Aligned_cols=81 Identities=28% Similarity=0.464 Sum_probs=77.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||.. |+..|+|+.|.|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 48999999999999999999999999999999999988999999999999999999999997 99999999999999976
Q ss_pred CC
Q 029300 95 GP 96 (195)
Q Consensus 95 ~~ 96 (195)
..
T Consensus 106 ~~ 107 (116)
T 1x4b_A 106 RE 107 (116)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 98
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=5.1e-21 Score=124.18 Aligned_cols=80 Identities=19% Similarity=0.365 Sum_probs=73.3
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhh-CCceecCcE
Q 029300 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL-DGRVVDGRE 86 (195)
Q Consensus 8 ~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l-~g~~~~g~~ 86 (195)
.|+.....++|||+|||..+++++|+++|.+||.|..|.++.+ +|||||+|.+.++|+.|+..| ||..|+|+.
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 4455567889999999999999999999999999999999864 489999999999999999998 999999999
Q ss_pred EEEEecc
Q 029300 87 ITVQFAK 93 (195)
Q Consensus 87 l~v~~a~ 93 (195)
|.|+|++
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9999985
No 99
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.85 E-value=1.1e-21 Score=124.46 Aligned_cols=75 Identities=27% Similarity=0.488 Sum_probs=72.0
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
+|||+|||+.+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++ |||..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 49999999999999999999999999999999998889999999999999999999998 9999999999999886
No 100
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=4.5e-21 Score=128.08 Aligned_cols=84 Identities=33% Similarity=0.529 Sum_probs=75.6
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcE
Q 029300 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (195)
Q Consensus 7 ~~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 86 (195)
..+....+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|++||+.|||..|.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 7 GGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp CCSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred CCCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 33445567789999999999999999999999999999999764 489999999999999999999999999999
Q ss_pred EEEEecccCC
Q 029300 87 ITVQFAKYGP 96 (195)
Q Consensus 87 l~v~~a~~~~ 96 (195)
|.|.|++...
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpj_A 81 LRVRFACHSA 90 (99)
T ss_dssp CEEEESSCCS
T ss_pred EEEEEcCCCC
Confidence 9999998644
No 101
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.85 E-value=3.6e-21 Score=124.11 Aligned_cols=73 Identities=25% Similarity=0.274 Sum_probs=69.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
...|||+||++.+++++|+++|.+||+|..+.+.. ++|||||+|.+.++|+.|++.||+..|.|++|.|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 67899999999999999999999999999999875 45999999999999999999999999999999999994
No 102
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.4e-21 Score=130.27 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=75.4
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEE
Q 029300 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (195)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 89 (195)
......++|||+|||+.+++++|+++|.+||. +.|.|+.++ ++.++|||||+|.+.++|++||+ +|+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVEL 86 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 34566789999999999999999999999995 499999887 89999999999999999999996 7999999999999
Q ss_pred EecccC
Q 029300 90 QFAKYG 95 (195)
Q Consensus 90 ~~a~~~ 95 (195)
.++...
T Consensus 87 ~~~~~~ 92 (102)
T 1wez_A 87 FLNSTA 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 998654
No 103
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.9e-21 Score=130.72 Aligned_cols=83 Identities=36% Similarity=0.580 Sum_probs=76.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
.....++|||+|||..+++++|+++|++||.|..|.|+.++ +.++|||||+|.+.++|+.|++.|||..|+|+.|.|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999998874 3478999999999999999999999999999999999
Q ss_pred ecccC
Q 029300 91 FAKYG 95 (195)
Q Consensus 91 ~a~~~ 95 (195)
++++.
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99764
No 104
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.85 E-value=4.5e-21 Score=133.17 Aligned_cols=81 Identities=27% Similarity=0.441 Sum_probs=76.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
.++|||+|||..+++++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.|| .|||..|+|+.|.|.+++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 579999999999999999999999999999999998889999999999999999999999 7999999999999999975
Q ss_pred CC
Q 029300 95 GP 96 (195)
Q Consensus 95 ~~ 96 (195)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 105
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.85 E-value=3.6e-21 Score=132.72 Aligned_cols=83 Identities=20% Similarity=0.292 Sum_probs=76.7
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCc---eeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcE
Q 029300 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGK---VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (195)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~---i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 86 (195)
++..+.++|||+|||+.+++++|+++|..||. |..|.|+.++. |.++|||||+|.+.++|++||+ ||+..|+|+.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 34566789999999999999999999999999 89999998875 9999999999999999999999 9999999999
Q ss_pred EEEEeccc
Q 029300 87 ITVQFAKY 94 (195)
Q Consensus 87 l~v~~a~~ 94 (195)
|.|.++..
T Consensus 90 i~V~~a~~ 97 (118)
T 2db1_A 90 IEVFKSHR 97 (118)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99999864
No 106
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=126.86 Aligned_cols=84 Identities=27% Similarity=0.438 Sum_probs=75.0
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEE
Q 029300 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (195)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 89 (195)
+...+.++|||+|||+.+++++|+++|..|+ .|.++.++.++.++|||||+|.+.++|+.||+.|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456678999999999999999999999874 5666677778999999999999999999999999999999999999
Q ss_pred EecccCC
Q 029300 90 QFAKYGP 96 (195)
Q Consensus 90 ~~a~~~~ 96 (195)
.|+++..
T Consensus 87 ~~a~~~~ 93 (102)
T 2fc8_A 87 DWAKPKG 93 (102)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9998654
No 107
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-20 Score=129.03 Aligned_cols=82 Identities=21% Similarity=0.475 Sum_probs=76.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCcee--------c
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV--------D 83 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~--------~ 83 (195)
..+.++|||+|||+.+++++|.++|.+||.|..|.|+.++ ++.++|||||+|.+.++|+.||..|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3567899999999999999999999999999999999987 899999999999999999999999999999 5
Q ss_pred CcEEEEEeccc
Q 029300 84 GREITVQFAKY 94 (195)
Q Consensus 84 g~~l~v~~a~~ 94 (195)
+++|.|.|+.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 78899999974
No 108
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.85 E-value=3.1e-21 Score=128.32 Aligned_cols=86 Identities=24% Similarity=0.508 Sum_probs=76.0
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHH----HHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCc
Q 029300 10 PDIRDTYSLLVLNITFRTTADDLF----PLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (195)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~----~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 85 (195)
++..++++|||+|||..+++++|. ++|.+||.|..|.|+. ++.++|||||+|.+.++|+.|+..|||..|+|+
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 345668899999999999999999 9999999999998873 566779999999999999999999999999999
Q ss_pred EEEEEecccCCCc
Q 029300 86 EITVQFAKYGPNA 98 (195)
Q Consensus 86 ~l~v~~a~~~~~~ 98 (195)
.|.|.|+++.+..
T Consensus 80 ~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 80 PMRIQYAKTDSDI 92 (97)
T ss_dssp ECEEEECSSCCTH
T ss_pred EEEEEEccCCCcc
Confidence 9999999876543
No 109
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.84 E-value=4e-21 Score=135.42 Aligned_cols=83 Identities=18% Similarity=0.266 Sum_probs=77.2
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCc---eeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcE
Q 029300 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGK---VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (195)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~---i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 86 (195)
++..+.++|||+|||+.+|+++|+++|.+||. |..|.|+.++. |.++|||||+|.+.++|++||+ ||+..|+|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 44566889999999999999999999999999 88999998876 9999999999999999999999 9999999999
Q ss_pred EEEEeccc
Q 029300 87 ITVQFAKY 94 (195)
Q Consensus 87 l~v~~a~~ 94 (195)
|.|.++..
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99999864
No 110
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.84 E-value=7.2e-22 Score=129.65 Aligned_cols=81 Identities=30% Similarity=0.475 Sum_probs=73.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecccC
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 95 (195)
++|||+|||..+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.+ |+.|+..|||..|+|+.|.|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999888999999999999999 99999999999999999999999865
Q ss_pred CC
Q 029300 96 PN 97 (195)
Q Consensus 96 ~~ 97 (195)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 111
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9e-21 Score=130.29 Aligned_cols=80 Identities=18% Similarity=0.301 Sum_probs=72.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCC--ceecCcEEEE
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG--RVVDGREITV 89 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g--~~~~g~~l~v 89 (195)
..++.+|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|++.++|++|++.|++ ..|.|++|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345789999999999999999999999999999999865 49999999999999999998884 6899999999
Q ss_pred EecccCCC
Q 029300 90 QFAKYGPN 97 (195)
Q Consensus 90 ~~a~~~~~ 97 (195)
.|++....
T Consensus 102 ~~a~~k~~ 109 (119)
T 2ad9_A 102 QFSNHKEL 109 (119)
T ss_dssp EECSSSSC
T ss_pred EEccCCCC
Confidence 99986543
No 112
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-21 Score=123.91 Aligned_cols=76 Identities=25% Similarity=0.466 Sum_probs=73.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.|+..++ ..|+|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999999 9999999999987
No 113
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=8.4e-21 Score=126.32 Aligned_cols=81 Identities=22% Similarity=0.241 Sum_probs=71.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
.....++|||+|||+.+++++|+++|.+||.|. +.++. +.++|||||+|.+.++|+.||+.|||..|+|+.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345578999999999999999999999999996 55553 3567999999999999999999999999999999999
Q ss_pred ecccCC
Q 029300 91 FAKYGP 96 (195)
Q Consensus 91 ~a~~~~ 96 (195)
++++.+
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998654
No 114
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=127.66 Aligned_cols=79 Identities=18% Similarity=0.435 Sum_probs=73.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
...++|||+|||..+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|+.||..|||..|.|+.|.|.|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 45789999999999999999999999999999999876 499999999999999999999999999999999999
Q ss_pred ccCCC
Q 029300 93 KYGPN 97 (195)
Q Consensus 93 ~~~~~ 97 (195)
+..+.
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87654
No 115
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-21 Score=135.96 Aligned_cols=84 Identities=15% Similarity=0.233 Sum_probs=75.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
+..+.++|||+|||+.+++++|.++|..||.|..+.++.+..+|.++|||||+|.+.++|++||+ |||..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34567899999999999999999999999999885555555689999999999999999999999 99999999999999
Q ss_pred ecccC
Q 029300 91 FAKYG 95 (195)
Q Consensus 91 ~a~~~ 95 (195)
++...
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 99754
No 116
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.84 E-value=7.7e-21 Score=139.96 Aligned_cols=84 Identities=29% Similarity=0.470 Sum_probs=78.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
...++++|||+|||+.+++++|+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred ecccC
Q 029300 91 FAKYG 95 (195)
Q Consensus 91 ~a~~~ 95 (195)
||...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 99754
No 117
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=122.78 Aligned_cols=77 Identities=29% Similarity=0.569 Sum_probs=71.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45578999999999999999999999999999999973 5999999999999999999999999999999999
Q ss_pred cccCC
Q 029300 92 AKYGP 96 (195)
Q Consensus 92 a~~~~ 96 (195)
+++..
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97643
No 118
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=128.27 Aligned_cols=81 Identities=19% Similarity=0.262 Sum_probs=74.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
...+.++|||+|||+.+++++|+++|.+| .|..|.|+.++. |.++|||||+|.+.++|++|| .||+..|+|+.|.|.
T Consensus 12 ~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 88 (109)
T 2dnn_A 12 INPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVS 88 (109)
T ss_dssp CCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 34456899999999999999999999999 899999998874 899999999999999999999 599999999999998
Q ss_pred eccc
Q 029300 91 FAKY 94 (195)
Q Consensus 91 ~a~~ 94 (195)
.+..
T Consensus 89 ~a~~ 92 (109)
T 2dnn_A 89 PATE 92 (109)
T ss_dssp ECCH
T ss_pred ECCc
Confidence 8864
No 119
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.84 E-value=4.4e-21 Score=146.75 Aligned_cols=82 Identities=26% Similarity=0.385 Sum_probs=77.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCC--ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYG--KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G--~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
..++|||+|||+.+++++|+++|.+|| .|+.|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 029300 92 AKYG 95 (195)
Q Consensus 92 a~~~ 95 (195)
++..
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 9753
No 120
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-21 Score=133.78 Aligned_cols=81 Identities=25% Similarity=0.403 Sum_probs=72.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCce----eEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEE
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKV----VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i----~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 87 (195)
..++++|||+|||..+++++|.++|.+||.| ..+.+. ++.++|||||+|.+.++|+.||+.|||..|.|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3457899999999999999999999999998 444443 77888999999999999999999999999999999
Q ss_pred EEEecccCC
Q 029300 88 TVQFAKYGP 96 (195)
Q Consensus 88 ~v~~a~~~~ 96 (195)
.|.|++...
T Consensus 98 ~v~~a~~~~ 106 (115)
T 2cpx_A 98 VIEFGKNKK 106 (115)
T ss_dssp EEEECCCCS
T ss_pred EEEEccCCC
Confidence 999998654
No 121
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.84 E-value=4.1e-21 Score=130.19 Aligned_cols=85 Identities=16% Similarity=0.279 Sum_probs=78.0
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCc---eeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCc
Q 029300 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGK---VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~---i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 85 (195)
.++..+.++|||+|||+.+++++|+++|..||. |..|.|+.++. |.++|||||+|.+.++|++||. ||+..|+|+
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQR 82 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCe
Confidence 445567889999999999999999999999998 89999999876 9999999999999999999999 999999999
Q ss_pred EEEEEecccC
Q 029300 86 EITVQFAKYG 95 (195)
Q Consensus 86 ~l~v~~a~~~ 95 (195)
.|.|.++...
T Consensus 83 ~i~V~~a~~~ 92 (107)
T 2lmi_A 83 YVEVYEINNE 92 (107)
T ss_dssp CCCCEECCHH
T ss_pred EEEEEECCHH
Confidence 9999998653
No 122
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.84 E-value=1.5e-20 Score=127.65 Aligned_cols=79 Identities=24% Similarity=0.448 Sum_probs=72.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
.....++|||+|||..+++++|.++|.+||.|..|.|+ +|||||+|.+.++|+.|++.|||..|+|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999987 3899999999999999999999999999999999
Q ss_pred ecccCCC
Q 029300 91 FAKYGPN 97 (195)
Q Consensus 91 ~a~~~~~ 97 (195)
|++..+.
T Consensus 99 ~a~~~~~ 105 (108)
T 2jvo_A 99 YSKLPAK 105 (108)
T ss_dssp SCSCCC-
T ss_pred EecCCCC
Confidence 9986543
No 123
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=8.6e-20 Score=121.80 Aligned_cols=78 Identities=29% Similarity=0.424 Sum_probs=71.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcC--CceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKY--GKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~--G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
...+.++|||+|||+.+++++|+++|.+| |.|..|.+. +|||||+|.+.++|+.||..|||..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 44567899999999999999999999999 999998875 37999999999999999999999999999999
Q ss_pred EEecccCC
Q 029300 89 VQFAKYGP 96 (195)
Q Consensus 89 v~~a~~~~ 96 (195)
|.|+++..
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpd_A 83 VTLAKPVD 90 (99)
T ss_dssp EECCCCCC
T ss_pred EEECCCCC
Confidence 99997643
No 124
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.84 E-value=3.5e-20 Score=123.40 Aligned_cols=77 Identities=17% Similarity=0.447 Sum_probs=70.9
Q ss_pred CCCCCcEEEEeCCCC-CCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEE
Q 029300 11 DIRDTYSLLVLNITF-RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~-~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 89 (195)
...++++|||+|||. .+++++|.++|.+||.|..|.|. +|||||+|.+.++|+.|++.|||..|+|+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345688999999998 99999999999999999999984 489999999999999999999999999999999
Q ss_pred EecccC
Q 029300 90 QFAKYG 95 (195)
Q Consensus 90 ~~a~~~ 95 (195)
++++..
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 999754
No 125
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-21 Score=131.08 Aligned_cols=82 Identities=26% Similarity=0.362 Sum_probs=74.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
...++|||+|||+.+++++|+++|.+||.|.. .++.+..++.++|||||+|.+.++|++||+ |||..|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35789999999999999999999999999877 555666678899999999999999999999 9999999999999999
Q ss_pred ccCC
Q 029300 93 KYGP 96 (195)
Q Consensus 93 ~~~~ 96 (195)
++..
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7644
No 126
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.83 E-value=4.7e-21 Score=123.37 Aligned_cols=73 Identities=26% Similarity=0.504 Sum_probs=67.6
Q ss_pred CcEEEEeCCCCCC------CHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCc-EE
Q 029300 15 TYSLLVLNITFRT------TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR-EI 87 (195)
Q Consensus 15 ~~~l~V~nLp~~~------~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~-~l 87 (195)
+++|||+|||..+ ++++|.++|++||.|..|.|+ +.+|.++|||||+|.+.++|+.|+..|||..|+|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 779999999999999999987 35889999999999999999999999999999999 88
Q ss_pred EE
Q 029300 88 TV 89 (195)
Q Consensus 88 ~v 89 (195)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 127
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.1e-20 Score=128.86 Aligned_cols=78 Identities=23% Similarity=0.298 Sum_probs=71.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
...++|||+|||+.+++++|+++|.+||.|..|.|+. .+|||||+|.+.++|+.||+.|||..|.|+.|.|+|+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4567999999999999999999999999999999875 3489999999999999999999999999999999999
Q ss_pred ccCC
Q 029300 93 KYGP 96 (195)
Q Consensus 93 ~~~~ 96 (195)
+...
T Consensus 82 ~~~~ 85 (111)
T 1whx_A 82 PIGV 85 (111)
T ss_dssp ETTT
T ss_pred CCCc
Confidence 7543
No 128
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=125.58 Aligned_cols=76 Identities=32% Similarity=0.531 Sum_probs=71.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecccC
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 95 (195)
++|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|++.|||..|.|+.|.|.+++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999876 5699999999999999999999999999999999999865
Q ss_pred C
Q 029300 96 P 96 (195)
Q Consensus 96 ~ 96 (195)
+
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 129
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.83 E-value=4.1e-20 Score=126.68 Aligned_cols=79 Identities=28% Similarity=0.501 Sum_probs=73.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
..+++|||+|||+.+++++|.++|.+||.|..|.|+.+ +..+|||||+|.+.++|+.|++.|||..|+|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 34689999999999999999999999999999999864 445799999999999999999999999999999999999
Q ss_pred cc
Q 029300 93 KY 94 (195)
Q Consensus 93 ~~ 94 (195)
.+
T Consensus 83 ~~ 84 (115)
T 3lqv_A 83 NA 84 (115)
T ss_dssp CH
T ss_pred cC
Confidence 75
No 130
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=2e-20 Score=124.25 Aligned_cols=78 Identities=18% Similarity=0.464 Sum_probs=70.9
Q ss_pred CCCCcEEEEeCCCC-CCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 12 IRDTYSLLVLNITF-RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 12 ~~~~~~l~V~nLp~-~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
..+.++|||+|||+ .+++++|.++|.+||.|..|.|. +|||||+|.+.++|+.||+.|||..|.|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999998 99999999999999999999984 4899999999999999999999999999999999
Q ss_pred ecccCCC
Q 029300 91 FAKYGPN 97 (195)
Q Consensus 91 ~a~~~~~ 97 (195)
+++..+.
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9986543
No 131
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-20 Score=124.61 Aligned_cols=81 Identities=27% Similarity=0.519 Sum_probs=72.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
...+.++|||+|||..+++++|+++|.+||.|..+ ..++.++|||||+|.+.++|+.|+..|||..|+|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999988766 2477889999999999999999999999999999999999
Q ss_pred ecccCC
Q 029300 91 FAKYGP 96 (195)
Q Consensus 91 ~a~~~~ 96 (195)
++.+..
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 997643
No 132
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.8e-20 Score=124.62 Aligned_cols=75 Identities=24% Similarity=0.422 Sum_probs=70.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
..++|||+|||..+++++|.++|.+||.|..|.|.. .+|||||+|.+.++|+.|+..|||..|+|+.|.|.|++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 468999999999999999999999999999999874 34999999999999999999999999999999999987
Q ss_pred c
Q 029300 94 Y 94 (195)
Q Consensus 94 ~ 94 (195)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 133
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.82 E-value=4.5e-20 Score=125.55 Aligned_cols=75 Identities=27% Similarity=0.474 Sum_probs=69.5
Q ss_pred CCCcEEEEeCCCCC-CCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 13 RDTYSLLVLNITFR-TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 13 ~~~~~l~V~nLp~~-~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
...++|||+|||+. +++++|+++|.+||.|..|.| .+|||||+|.+.++|+.||+.|||..|+|+.|.|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34589999999999 999999999999999999988 348999999999999999999999999999999999
Q ss_pred cccC
Q 029300 92 AKYG 95 (195)
Q Consensus 92 a~~~ 95 (195)
++..
T Consensus 97 a~~~ 100 (110)
T 1wf1_A 97 AGEP 100 (110)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9743
No 134
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3e-20 Score=122.64 Aligned_cols=77 Identities=26% Similarity=0.378 Sum_probs=68.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCc-eeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCC-ceecCcEEEEE
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGK-VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG-RVVDGREITVQ 90 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~-i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g-~~~~g~~l~v~ 90 (195)
...++|||+|||+.+++++|+++|.+||. |..+.+. .+|||||+|.+.++|+.||+.||| ..|+|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45678999999999999999999999999 6555553 348999999999999999999999 99999999999
Q ss_pred ecccCC
Q 029300 91 FAKYGP 96 (195)
Q Consensus 91 ~a~~~~ 96 (195)
++++..
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 997543
No 135
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=5e-22 Score=136.56 Aligned_cols=86 Identities=26% Similarity=0.405 Sum_probs=79.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeE--------EEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceec
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVD--------VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD 83 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~--------v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 83 (195)
..+.++|||+|||..+++++|+++|.+||.|.. |.|+.++.++.++|||||+|.+.++|+.||..|||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 445789999999999999999999999999998 889888888999999999999999999999999999999
Q ss_pred CcEEEEEecccCCC
Q 029300 84 GREITVQFAKYGPN 97 (195)
Q Consensus 84 g~~l~v~~a~~~~~ 97 (195)
|+.|.|.++++.+.
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999986543
No 136
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.82 E-value=7e-21 Score=120.65 Aligned_cols=75 Identities=21% Similarity=0.409 Sum_probs=71.5
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
+|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.|++ +++..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999998889999999999999999999999 4999999999999875
No 137
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=5.6e-20 Score=121.98 Aligned_cols=81 Identities=23% Similarity=0.300 Sum_probs=72.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEE-EeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDV-FIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v-~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 89 (195)
.....++|||+|||+.+++++|+++|.+||.|..| .|+.++.+ +.|||+|.+.++|+.||..|||..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34457899999999999999999999999999999 57776544 44999999999999999999999999999999
Q ss_pred EecccC
Q 029300 90 QFAKYG 95 (195)
Q Consensus 90 ~~a~~~ 95 (195)
.++.+.
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 999865
No 138
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-20 Score=127.51 Aligned_cols=79 Identities=19% Similarity=0.244 Sum_probs=70.3
Q ss_pred CCCCcEEEEeCCCCC-CCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCC--ceecCcEEE
Q 029300 12 IRDTYSLLVLNITFR-TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG--RVVDGREIT 88 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~-~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g--~~~~g~~l~ 88 (195)
..++++|||+|||+. +++++|.++|.+||.|..|.|+.. +|||||+|++.++|+.||+.||+ ..|.|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345789999999998 999999999999999999999753 49999999999999999998864 569999999
Q ss_pred EEecccCC
Q 029300 89 VQFAKYGP 96 (195)
Q Consensus 89 v~~a~~~~ 96 (195)
|+|++...
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997543
No 139
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.82 E-value=8.4e-20 Score=138.12 Aligned_cols=85 Identities=24% Similarity=0.413 Sum_probs=78.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
..+.++|||+|||+.+++++|.++|++||+|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccCC
Q 029300 92 AKYGP 96 (195)
Q Consensus 92 a~~~~ 96 (195)
+....
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 87544
No 140
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.82 E-value=7.9e-21 Score=135.19 Aligned_cols=87 Identities=25% Similarity=0.335 Sum_probs=73.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEE--eccC---CCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcE
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVF--IPRD---RRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~--~~~~---~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 86 (195)
..++++|||+|||+.+++++|..+|.+||.|..|. ++.+ ..++.++|||||+|.+.++|+.||..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45578999999999999999999999999987641 1111 136888999999999999999999999999999999
Q ss_pred EEEEecccCCCc
Q 029300 87 ITVQFAKYGPNA 98 (195)
Q Consensus 87 l~v~~a~~~~~~ 98 (195)
|.|.|++.....
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999765433
No 141
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.7e-19 Score=118.30 Aligned_cols=79 Identities=28% Similarity=0.431 Sum_probs=70.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
...+.++|||+|| .+++++|+++|.+||.|..|.|.. .+|||||+|.+.++|+.||..|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456789999996 899999999999999999999853 45899999999999999999999999999999999
Q ss_pred ecccCCC
Q 029300 91 FAKYGPN 97 (195)
Q Consensus 91 ~a~~~~~ 97 (195)
|+++.+.
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9986543
No 142
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=119.74 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=68.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
.....+|||+|||+.+++++|.++|.+||.|..| +.++.++. ||||+|.+.++|++||+ |||..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456799999999999999999999999999988 34444554 99999999999999999 999999999999998
Q ss_pred cccC
Q 029300 92 AKYG 95 (195)
Q Consensus 92 a~~~ 95 (195)
+...
T Consensus 79 a~~~ 82 (94)
T 2e5g_A 79 REQK 82 (94)
T ss_dssp SCCS
T ss_pred CCcC
Confidence 8643
No 143
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.81 E-value=2e-20 Score=125.57 Aligned_cols=85 Identities=27% Similarity=0.410 Sum_probs=77.7
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
|+.....++|||+|||+.+++++|.++|.+||.|..|.|+.++ +|.++|||||+|.+.++|+.||. ++..|+|+.|.
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~ 79 (102)
T 2xs2_A 3 PEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLK 79 (102)
T ss_dssp CCCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEE
Confidence 3344557899999999999999999999999999999999998 89999999999999999999999 99999999999
Q ss_pred EEecccCC
Q 029300 89 VQFAKYGP 96 (195)
Q Consensus 89 v~~a~~~~ 96 (195)
|.++....
T Consensus 80 v~~a~~~~ 87 (102)
T 2xs2_A 80 LGPAIRKQ 87 (102)
T ss_dssp EEEEEECC
T ss_pred EEECCcCc
Confidence 99987544
No 144
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.81 E-value=1.2e-20 Score=133.40 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=74.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
.....++|||+|||+.+++++|+++|.+|| |+.|.|+.++. +.++|||||+|.+.++|++|| .+|+..|+|+.|.|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 345578999999999999999999999999 77999999875 999999999999999999999 689999999999999
Q ss_pred ecccCC
Q 029300 91 FAKYGP 96 (195)
Q Consensus 91 ~a~~~~ 96 (195)
++....
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 987644
No 145
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.5e-19 Score=129.50 Aligned_cols=83 Identities=28% Similarity=0.550 Sum_probs=78.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
...+.++|||+|||..+++++|.++|++||.|..+.++.++.+|.++|||||+|.+.++|+.|+..|||..|+|+.|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecc
Q 029300 91 FAK 93 (195)
Q Consensus 91 ~a~ 93 (195)
||+
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 986
No 146
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.81 E-value=1.5e-19 Score=129.60 Aligned_cols=81 Identities=27% Similarity=0.428 Sum_probs=74.3
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEE
Q 029300 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (195)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 89 (195)
......++|||+|||+.+++++|.++|.+||.|..|.|+.+ ++|||||+|.+.++|+.||..|||..|+|++|.|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999875 4699999999999999999999999999999999
Q ss_pred EecccC
Q 029300 90 QFAKYG 95 (195)
Q Consensus 90 ~~a~~~ 95 (195)
.|+++.
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 999764
No 147
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=117.85 Aligned_cols=74 Identities=28% Similarity=0.409 Sum_probs=66.0
Q ss_pred CCcE-EEEeCCCCCCCHHH----HHHHhhcC-CceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEE
Q 029300 14 DTYS-LLVLNITFRTTADD----LFPLFEKY-GKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (195)
Q Consensus 14 ~~~~-l~V~nLp~~~~~~~----l~~~f~~~-G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 87 (195)
++.| |||+|||+.+++++ |.++|.+| |+|..| ++ |+|||+|.+.++|+.|++.|||..|.|++|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 4555 99999999999988 55899999 499988 23 999999999999999999999999999999
Q ss_pred EEEecccCCC
Q 029300 88 TVQFAKYGPN 97 (195)
Q Consensus 88 ~v~~a~~~~~ 97 (195)
.|.||+....
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999987654
No 148
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=2.6e-19 Score=123.91 Aligned_cols=75 Identities=25% Similarity=0.347 Sum_probs=67.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccE-EEEEEccHHHHHHHHHhhCCceecC--cEEEEEec
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGF-AFVRYKYADEAQKAVDRLDGRVVDG--REITVQFA 92 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~-afV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a 92 (195)
..|||+||++.+++++|.++|++||.|..|.|+.. .|| |||+|.+.++|+.|++.|||..|.| ..|.|+||
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 45789999999999999999999999999998642 176 9999999999999999999999987 68999999
Q ss_pred ccCC
Q 029300 93 KYGP 96 (195)
Q Consensus 93 ~~~~ 96 (195)
++..
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8653
No 149
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=123.84 Aligned_cols=79 Identities=25% Similarity=0.449 Sum_probs=70.6
Q ss_pred CCCcEEEE--eCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCcee-----cCc
Q 029300 13 RDTYSLLV--LNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV-----DGR 85 (195)
Q Consensus 13 ~~~~~l~V--~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~-----~g~ 85 (195)
.++.+||| +||++.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|++.|||..| .|.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 44678999 779999999999999999999999988643 48999999999999999999999998 689
Q ss_pred EEEEEecccCCC
Q 029300 86 EITVQFAKYGPN 97 (195)
Q Consensus 86 ~l~v~~a~~~~~ 97 (195)
+|.|.|++..+.
T Consensus 97 ~l~v~~a~~~p~ 108 (114)
T 2cq2_A 97 TLYLNFVEKVQW 108 (114)
T ss_dssp ECEEEEESCCCC
T ss_pred EEEEEecccCcc
Confidence 999999976554
No 150
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.81 E-value=8.4e-20 Score=126.86 Aligned_cols=80 Identities=23% Similarity=0.349 Sum_probs=72.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCcee--EEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVV--DVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~--~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
+....++|||+|||+.+++++|+++|.+| .|+ .|.|+.++. |.++|||||+|.+.++|++||+ +++..|+|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 44567899999999999999999999999 676 899998875 9999999999999999999999 478999999999
Q ss_pred EEecc
Q 029300 89 VQFAK 93 (195)
Q Consensus 89 v~~a~ 93 (195)
|.++.
T Consensus 115 V~~a~ 119 (126)
T 2hgm_A 115 VFKSS 119 (126)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 98875
No 151
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.80 E-value=3.7e-19 Score=128.73 Aligned_cols=82 Identities=28% Similarity=0.492 Sum_probs=78.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
.++|||+|||+.+++++|.++|..||.|..|.++.++.+|.++|||||+|.+.++|+.|++.|||..|.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999999988999999999999999999999999999999999999999976
Q ss_pred CC
Q 029300 95 GP 96 (195)
Q Consensus 95 ~~ 96 (195)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 152
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.80 E-value=2e-19 Score=117.55 Aligned_cols=76 Identities=18% Similarity=0.365 Sum_probs=69.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
..++|||+|||+.+++++|+++|.+| .|..|.|. .++|||||+|.+.++|+.|++.|||..|+|+.|.|++++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46789999999999999999999999 99999884 456999999999999999999999999999999999997
Q ss_pred cCC
Q 029300 94 YGP 96 (195)
Q Consensus 94 ~~~ 96 (195)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 153
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.80 E-value=2.7e-19 Score=129.80 Aligned_cols=83 Identities=30% Similarity=0.503 Sum_probs=78.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
++++|||+|||+.+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|+.|++.|||..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 36799999999999999999999999999999999988889999999999999999999999999999999999999997
Q ss_pred cCC
Q 029300 94 YGP 96 (195)
Q Consensus 94 ~~~ 96 (195)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 644
No 154
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.80 E-value=2.4e-19 Score=129.22 Aligned_cols=80 Identities=24% Similarity=0.368 Sum_probs=71.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecC--cEEEE
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG--REITV 89 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~l~v 89 (195)
.....+|||+||++.+++++|.++|++||.|..|.|... ..+|||||+|.+.++|+.|++.|||..|.| +.|.|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 344567999999999999999999999999999998643 245899999999999999999999999965 99999
Q ss_pred EecccC
Q 029300 90 QFAKYG 95 (195)
Q Consensus 90 ~~a~~~ 95 (195)
+|+++.
T Consensus 119 ~~Ak~~ 124 (164)
T 1sjr_A 119 DFSKLT 124 (164)
T ss_dssp EECSSS
T ss_pred EEecCC
Confidence 999865
No 155
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.80 E-value=4e-19 Score=133.97 Aligned_cols=86 Identities=27% Similarity=0.449 Sum_probs=80.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
...++|||+|||..+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|+..|||..|+|+.|.|.|+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCCCc
Q 029300 93 KYGPNA 98 (195)
Q Consensus 93 ~~~~~~ 98 (195)
...+..
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 876543
No 156
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.8e-19 Score=122.43 Aligned_cols=81 Identities=17% Similarity=0.266 Sum_probs=69.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCC---CCcccEEEEEEccHHHHHHHHHhhCCceecCcEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRT---GDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~---g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 87 (195)
.....++|||+|||+.+++++|+++|.+||.|. +.++.+..+ |.++|||||+|.+.++|++||+.|+ .++|..|
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~ 80 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLY 80 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEE
Confidence 345578999999999999999999999999999 888877766 7899999999999999999999884 3777777
Q ss_pred EEEeccc
Q 029300 88 TVQFAKY 94 (195)
Q Consensus 88 ~v~~a~~ 94 (195)
.|..+..
T Consensus 81 ~~~~~~~ 87 (114)
T 2dnl_A 81 LCVSSPT 87 (114)
T ss_dssp EEECCSS
T ss_pred EeccCCC
Confidence 7766543
No 157
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=125.96 Aligned_cols=80 Identities=18% Similarity=0.280 Sum_probs=73.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCce----eEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKV----VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i----~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
.+.++|||+|||+.+++++|+++|.+||.| ..|.|+.+. +|.++|||||+|.+.++|++||+. |+..|+|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 457899999999999999999999999975 688888874 899999999999999999999996 99999999999
Q ss_pred EEeccc
Q 029300 89 VQFAKY 94 (195)
Q Consensus 89 v~~a~~ 94 (195)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988854
No 158
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.79 E-value=4.8e-19 Score=131.62 Aligned_cols=87 Identities=31% Similarity=0.503 Sum_probs=79.0
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEE
Q 029300 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (195)
Q Consensus 8 ~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 87 (195)
.|+...+.++|||+|||+.+++++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||+. ++..|.|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l 84 (196)
T 1l3k_A 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVV 84 (196)
T ss_dssp --CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEe
Confidence 445566788999999999999999999999999999999999988999999999999999999999985 9999999999
Q ss_pred EEEecccC
Q 029300 88 TVQFAKYG 95 (195)
Q Consensus 88 ~v~~a~~~ 95 (195)
.|.++...
T Consensus 85 ~v~~~~~~ 92 (196)
T 1l3k_A 85 EPKRAVSR 92 (196)
T ss_dssp EEEECCC-
T ss_pred eeecccCc
Confidence 99998754
No 159
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.79 E-value=7.1e-19 Score=130.90 Aligned_cols=84 Identities=23% Similarity=0.380 Sum_probs=79.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
...++|||+|||..+++++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.|++.|||..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45689999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred ccCC
Q 029300 93 KYGP 96 (195)
Q Consensus 93 ~~~~ 96 (195)
++..
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 160
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.79 E-value=7.2e-19 Score=122.30 Aligned_cols=77 Identities=26% Similarity=0.436 Sum_probs=69.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccE-EEEEEccHHHHHHHHHhhCCceecC--cEEEEE
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGF-AFVRYKYADEAQKAVDRLDGRVVDG--REITVQ 90 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~-afV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~ 90 (195)
.-..|||+||++.+++++|.++|++||.|..|.|+.. .+|| |||+|.+.++|+.|++.|||..|.| ..|.|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3456889999999999999999999999999988753 2477 9999999999999999999999988 899999
Q ss_pred ecccC
Q 029300 91 FAKYG 95 (195)
Q Consensus 91 ~a~~~ 95 (195)
|++..
T Consensus 102 ~ak~~ 106 (130)
T 3zzy_A 102 FSKLT 106 (130)
T ss_dssp ECSCS
T ss_pred ecCCC
Confidence 99864
No 161
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.6e-19 Score=122.26 Aligned_cols=79 Identities=19% Similarity=0.234 Sum_probs=72.1
Q ss_pred cEEEEeCC----CCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEcc----HHH----HHHHHH--hhCCce
Q 029300 16 YSLLVLNI----TFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADE----AQKAVD--RLDGRV 81 (195)
Q Consensus 16 ~~l~V~nL----p~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~----~~~----a~~a~~--~l~g~~ 81 (195)
..|||+|| |+.+++++|+++|+.||+|..|.++.++.||.++|||||+|.+ +++ |..|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999996 333 788888 789999
Q ss_pred ecCcEEEEEeccc
Q 029300 82 VDGREITVQFAKY 94 (195)
Q Consensus 82 ~~g~~l~v~~a~~ 94 (195)
|+|+.|.|.+...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999999764
No 162
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.78 E-value=8.9e-19 Score=130.16 Aligned_cols=85 Identities=31% Similarity=0.392 Sum_probs=75.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
...++|||+|||+.+++++|.++|++||.|..|.|+.+..+|.++|||||+|.+.++|++||.. +|..|+|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3458999999999999999999999999999999999988999999999999999999999996 899999999999999
Q ss_pred ccCCCc
Q 029300 93 KYGPNA 98 (195)
Q Consensus 93 ~~~~~~ 98 (195)
.+....
T Consensus 181 ~~k~~~ 186 (196)
T 1l3k_A 181 LSKQEM 186 (196)
T ss_dssp C-----
T ss_pred CChhHh
Confidence 865543
No 163
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.78 E-value=8.7e-19 Score=127.60 Aligned_cols=80 Identities=23% Similarity=0.370 Sum_probs=76.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
....+|||+|||..+++++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.++|++|++.|||..|+|+.|.|.||
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34688999999999999999999999999999999999889999999999999999999999999999999999999997
No 164
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.78 E-value=1.7e-18 Score=113.36 Aligned_cols=77 Identities=34% Similarity=0.467 Sum_probs=62.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCce--ecCcEEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV--VDGREIT 88 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~--~~g~~l~ 88 (195)
.....++|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++ |++.. +.|..|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3455789999999999999999999999999999999864 66999999999999983 45554 4699999
Q ss_pred EEecccCC
Q 029300 89 VQFAKYGP 96 (195)
Q Consensus 89 v~~a~~~~ 96 (195)
|.++.+..
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99997543
No 165
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.78 E-value=5.3e-19 Score=128.18 Aligned_cols=80 Identities=26% Similarity=0.399 Sum_probs=76.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
..+|||+|||..+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|++ ++|..|+|+.|.|.||.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 5689999999999999999999999999999999998899999999999999999999999 899999999999999976
Q ss_pred C
Q 029300 95 G 95 (195)
Q Consensus 95 ~ 95 (195)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 166
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.77 E-value=1.1e-18 Score=120.62 Aligned_cols=79 Identities=28% Similarity=0.428 Sum_probs=70.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEe
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 91 (195)
....++|||+|| .+++++|.++|++||.|..|.|.. .+|||||+|.+.++|+.||+.|||..|.|+.|.|.|
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET------TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 355789999996 699999999999999999998863 459999999999999999999999999999999999
Q ss_pred cccCCCc
Q 029300 92 AKYGPNA 98 (195)
Q Consensus 92 a~~~~~~ 98 (195)
++..+..
T Consensus 108 a~~~~~~ 114 (121)
T 2bz2_A 108 ARKQPML 114 (121)
T ss_dssp CCSSCC-
T ss_pred eCCCCCC
Confidence 9876543
No 167
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.77 E-value=2.9e-18 Score=124.24 Aligned_cols=81 Identities=38% Similarity=0.594 Sum_probs=76.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecC--cEEEE
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG--REITV 89 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g--~~l~v 89 (195)
....++|||+|||..+++++|.++|++||.|..|.++.++.++.++|||||+|.+.++|+.|+..|||..|.| .+|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3457899999999999999999999999999999999988889999999999999999999999999999988 99999
Q ss_pred Eec
Q 029300 90 QFA 92 (195)
Q Consensus 90 ~~a 92 (195)
.||
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 168
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.77 E-value=1.7e-18 Score=130.95 Aligned_cols=81 Identities=19% Similarity=0.455 Sum_probs=74.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
...+|||+|||+.+++++|.++|.+||.|..|.|+.+. +.++|||||+|.+.++|+.||+.|||..|+|+.|.|.+++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 35689999999999999999999999999999998874 4478999999999999999999999999999999999997
Q ss_pred cCC
Q 029300 94 YGP 96 (195)
Q Consensus 94 ~~~ 96 (195)
+..
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 643
No 169
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.77 E-value=2e-18 Score=112.27 Aligned_cols=72 Identities=29% Similarity=0.560 Sum_probs=66.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcC----C-------ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCce
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKY----G-------KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV 81 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~----G-------~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~ 81 (195)
.+.++|||+|||+.+++++|+++|.+| | .|..|.+..+ +|||||+|.+.++|++|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 8999998765 499999999999999999 899999
Q ss_pred ecCcEEEEEe
Q 029300 82 VDGREITVQF 91 (195)
Q Consensus 82 ~~g~~l~v~~ 91 (195)
|.|+.|.|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999874
No 170
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.76 E-value=3.7e-18 Score=128.44 Aligned_cols=77 Identities=23% Similarity=0.368 Sum_probs=71.3
Q ss_pred CCcEEEEeCCC-CCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 14 DTYSLLVLNIT-FRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 14 ~~~~l~V~nLp-~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
++++|||+||| ..+++++|.++|++||.|..|.|+.+ .+|||||+|.+.++|+.||+.|||..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 79999999999999999999999764 3599999999999999999999999999999999999
Q ss_pred ccC
Q 029300 93 KYG 95 (195)
Q Consensus 93 ~~~ 95 (195)
+..
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 754
No 171
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.76 E-value=1.1e-18 Score=133.46 Aligned_cols=83 Identities=18% Similarity=0.343 Sum_probs=71.1
Q ss_pred CCCCcEEEEeCCCCCC---------CHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCcee
Q 029300 12 IRDTYSLLVLNITFRT---------TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~---------~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 82 (195)
.....+|||+||+..+ ++++|.++|++||+|..|.|+.+ +|||||+|.+.++|+.|+++|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 79999999999999999999864 49999999999999999999999999
Q ss_pred ------------cCcEEEEEecccCCCchh
Q 029300 83 ------------DGREITVQFAKYGPNAEK 100 (195)
Q Consensus 83 ------------~g~~l~v~~a~~~~~~~~ 100 (195)
.|..|.|.||+..++...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pnp~~ 234 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPDPAA 234 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC-------
T ss_pred eccccccccccCCCCEEEEEEccCCCCHHH
Confidence 899999999998766543
No 172
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.76 E-value=3e-18 Score=123.75 Aligned_cols=80 Identities=24% Similarity=0.371 Sum_probs=74.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecccC
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 95 (195)
.+|||+|||..+++++|.++|++||.|..|.|+.++ ++.++|||||+|.+.++|+.|++.|||..|.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 479999999999999999999999999999998886 5778999999999999999999999999999999999999754
Q ss_pred C
Q 029300 96 P 96 (195)
Q Consensus 96 ~ 96 (195)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 173
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.76 E-value=2.7e-18 Score=129.39 Aligned_cols=83 Identities=24% Similarity=0.369 Sum_probs=75.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
+.++|||+|||..+++++|.++|.+||.|..|.|+.++.++..+|||||+|.+.++|+.||+.|||..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 35789999999999999999999999999999999988889999999999999999999999999999999999999876
Q ss_pred cCC
Q 029300 94 YGP 96 (195)
Q Consensus 94 ~~~ 96 (195)
...
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 543
No 174
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.76 E-value=6e-18 Score=114.02 Aligned_cols=82 Identities=27% Similarity=0.272 Sum_probs=72.2
Q ss_pred CCCcEEEEeCCCC-----CCCHHHHHHHhhcCCceeEEEeccCCCC-CCcccEEEEEEccHHHHHHHHHhhCCceecCcE
Q 029300 13 RDTYSLLVLNITF-----RTTADDLFPLFEKYGKVVDVFIPRDRRT-GDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (195)
Q Consensus 13 ~~~~~l~V~nLp~-----~~~~~~l~~~f~~~G~i~~v~~~~~~~~-g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 86 (195)
.++.+|+|.||.. ..++++|+++|++||.|..|.|+.++.+ +.++|||||+|.+.++|++|++.|||..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3477999999963 2378999999999999999999887643 678999999999999999999999999999999
Q ss_pred EEEEeccc
Q 029300 87 ITVQFAKY 94 (195)
Q Consensus 87 l~v~~a~~ 94 (195)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 175
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.75 E-value=3e-18 Score=130.93 Aligned_cols=88 Identities=32% Similarity=0.460 Sum_probs=76.0
Q ss_pred CCCCCCCC--CCCCCcEEEEeCCCC-CCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCC
Q 029300 3 HFGKSGPP--DIRDTYSLLVLNITF-RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (195)
Q Consensus 3 ~~~~~~p~--~~~~~~~l~V~nLp~-~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g 79 (195)
|||..+++ ...++++|||+|||+ .+++++|.++|++||.|..|.|+.++ +|||||+|.+.++|+.||+.|||
T Consensus 20 ~~g~~~~p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g 94 (229)
T 2adc_A 20 HMGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNG 94 (229)
T ss_dssp --CCCCCGGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTT
T ss_pred hccCcCCCCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCC
Confidence 44543333 235678999999999 99999999999999999999998764 58999999999999999999999
Q ss_pred ceecCcEEEEEecccC
Q 029300 80 RVVDGREITVQFAKYG 95 (195)
Q Consensus 80 ~~~~g~~l~v~~a~~~ 95 (195)
..|.|+.|.|.++...
T Consensus 95 ~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 95 HKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CBCSSSBCEEECCSCC
T ss_pred CeECCeEEEEEEecCc
Confidence 9999999999999755
No 176
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.75 E-value=5.1e-18 Score=122.65 Aligned_cols=80 Identities=35% Similarity=0.533 Sum_probs=74.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcE--EEEE
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE--ITVQ 90 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~--l~v~ 90 (195)
....+|||+|||..+++++|.++|.+||.|..|.++.+..+|.++|||||+|.+.++|+.|++.|||..|.|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 45678999999999999999999999999999999998888999999999999999999999999999999964 8888
Q ss_pred ec
Q 029300 91 FA 92 (195)
Q Consensus 91 ~a 92 (195)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 76
No 177
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-18 Score=111.89 Aligned_cols=76 Identities=30% Similarity=0.460 Sum_probs=64.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
++++|||+|||+.+++++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.|..|.|.+++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 4689999999999999999999999999999999754 569999999999999865332 345689999999987
Q ss_pred cCC
Q 029300 94 YGP 96 (195)
Q Consensus 94 ~~~ 96 (195)
+..
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.75 E-value=6.3e-18 Score=123.52 Aligned_cols=78 Identities=28% Similarity=0.530 Sum_probs=71.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
...++|||+|||..+++++|.++|.+||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 456899999999999999999999999988776 347888999999999999999999999999999999999999
Q ss_pred ccC
Q 029300 93 KYG 95 (195)
Q Consensus 93 ~~~ 95 (195)
.++
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 765
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.74 E-value=1.3e-17 Score=130.87 Aligned_cols=85 Identities=25% Similarity=0.513 Sum_probs=76.9
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHH----HHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCc
Q 029300 10 PDIRDTYSLLVLNITFRTTADDLF----PLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (195)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~----~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 85 (195)
++..++++|||+|||+.+++++|+ ++|.+||.|..|.|+. ++..+|||||+|.+.++|+.||+.|||..|.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 345668999999999999999966 8999999999999875 677889999999999999999999999999999
Q ss_pred EEEEEecccCCC
Q 029300 86 EITVQFAKYGPN 97 (195)
Q Consensus 86 ~l~v~~a~~~~~ 97 (195)
.|.|.|++....
T Consensus 81 ~l~v~~a~~~~~ 92 (282)
T 3pgw_A 81 PMRIQYAKTDSD 92 (282)
T ss_pred EEEEEEeccCcc
Confidence 999999976543
No 180
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.74 E-value=8.3e-18 Score=122.55 Aligned_cols=80 Identities=26% Similarity=0.400 Sum_probs=73.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceec---CcEEEE
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD---GREITV 89 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~~l~v 89 (195)
....+|||+|||+.+++++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++|+.|++.|||..+. +++|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 356799999999999999999999999999999998885 6889999999999999999999999998775 499999
Q ss_pred Eecc
Q 029300 90 QFAK 93 (195)
Q Consensus 90 ~~a~ 93 (195)
.||.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9973
No 181
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.73 E-value=9.6e-18 Score=122.20 Aligned_cols=82 Identities=28% Similarity=0.381 Sum_probs=74.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCC--CcccEEEEEEccHHHHHHHHHhhCCceec---CcEEE
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTG--DSRGFAFVRYKYADEAQKAVDRLDGRVVD---GREIT 88 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g--~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~~l~ 88 (195)
+.++|||+|||+.+++++|.++|.+||.|..|.|+.++.++ .++|||||+|.+.++|+.|++.|||..+. +..|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999988776 78999999999999999999999998875 67788
Q ss_pred EEecccC
Q 029300 89 VQFAKYG 95 (195)
Q Consensus 89 v~~a~~~ 95 (195)
|.++...
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 8887644
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.73 E-value=1.4e-17 Score=131.36 Aligned_cols=84 Identities=21% Similarity=0.409 Sum_probs=76.3
Q ss_pred CCCCcEEEEeCCCCC-CCHHHHHHHhhcCCceeEEEeccCCC-CCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEE
Q 029300 12 IRDTYSLLVLNITFR-TTADDLFPLFEKYGKVVDVFIPRDRR-TGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~-~~~~~l~~~f~~~G~i~~v~~~~~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 89 (195)
....++|||+|||.. +++++|.++|.+||.|..|.|+.+.. +|.++|||||+|.+.++|+.|| .|||..|+|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 345689999999999 99999999999999999999998765 5899999999999999999999 99999999999999
Q ss_pred EecccCC
Q 029300 90 QFAKYGP 96 (195)
Q Consensus 90 ~~a~~~~ 96 (195)
.|+++++
T Consensus 286 ~~a~~k~ 292 (292)
T 2ghp_A 286 SLADKKP 292 (292)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9998653
No 183
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.73 E-value=7.8e-18 Score=121.97 Aligned_cols=79 Identities=30% Similarity=0.542 Sum_probs=73.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
++++|||+|||+.+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|+.||.. +..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 468999999999999999999999999999999999988999999999999999999999994 678999999998875
Q ss_pred c
Q 029300 94 Y 94 (195)
Q Consensus 94 ~ 94 (195)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 184
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.73 E-value=2e-17 Score=123.24 Aligned_cols=78 Identities=19% Similarity=0.294 Sum_probs=71.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
.++|||+|||+.+++++|.++|++||.|..|.|+.+. ++.++|||||+|.+.++|+.||..++ ..|+|+.|.|.+++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 4789999999999999999999999999999998876 58899999999999999999998654 599999999999864
No 185
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.72 E-value=3.4e-17 Score=127.45 Aligned_cols=85 Identities=36% Similarity=0.607 Sum_probs=75.5
Q ss_pred CCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceec
Q 029300 4 FGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD 83 (195)
Q Consensus 4 ~~~~~p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 83 (195)
+..++.......++|||+|||+.+|+++|.++|.+||.|..|.|..+ +|||||+|.+.++|+.|+..|||..|.
T Consensus 11 ~~~p~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~ 84 (261)
T 3sde_A 11 FLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILK 84 (261)
T ss_dssp CCCTTCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred cCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEEC
Confidence 34444555566789999999999999999999999999999999654 499999999999999999999999999
Q ss_pred CcEEEEEeccc
Q 029300 84 GREITVQFAKY 94 (195)
Q Consensus 84 g~~l~v~~a~~ 94 (195)
|+.|.|.++..
T Consensus 85 g~~l~v~~a~~ 95 (261)
T 3sde_A 85 SRPLRIRFATH 95 (261)
T ss_dssp TEECEEEECCC
T ss_pred CceeEeeeccc
Confidence 99999999864
No 186
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.1e-17 Score=109.75 Aligned_cols=83 Identities=27% Similarity=0.414 Sum_probs=70.0
Q ss_pred CCCCCCcEEEEeCCCCCCC-----------HHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhC
Q 029300 10 PDIRDTYSLLVLNITFRTT-----------ADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (195)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~-----------~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 78 (195)
..+.++.+|+|.||..... +++|+++|.+||.|..|.| .++ .++|||||+|.+.++|+.||..||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3445688999999944332 5799999999999999966 332 368999999999999999999999
Q ss_pred CceecCcEEEEEecccCC
Q 029300 79 GRVVDGREITVQFAKYGP 96 (195)
Q Consensus 79 g~~~~g~~l~v~~a~~~~ 96 (195)
|..|+|++|.|.++.+..
T Consensus 86 g~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp TCEETTEECEEEECCSCC
T ss_pred CCEECCcEEEEEEeCCCC
Confidence 999999999999997643
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.71 E-value=4.1e-17 Score=128.14 Aligned_cols=88 Identities=22% Similarity=0.314 Sum_probs=80.3
Q ss_pred CCCCCcEEEEeCCCCCC-CHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEE
Q 029300 11 DIRDTYSLLVLNITFRT-TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~-~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 89 (195)
......+|||+|||..+ ++++|.++|+.||.|..|.|+.+. +|.++|||||+|.+.++|..|+..|||..|+|+.|.|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 33557899999999995 999999999999999999998876 7889999999999999999999999999999999999
Q ss_pred EecccCCCch
Q 029300 90 QFAKYGPNAE 99 (195)
Q Consensus 90 ~~a~~~~~~~ 99 (195)
.|+.+.....
T Consensus 259 ~~a~~~~~~~ 268 (284)
T 3smz_A 259 SFCAPGPPGR 268 (284)
T ss_dssp EECCSSSCHH
T ss_pred EEecCCCccc
Confidence 9998776543
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.70 E-value=7.3e-17 Score=126.59 Aligned_cols=76 Identities=25% Similarity=0.325 Sum_probs=70.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceec-CcEEEEEe
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD-GREITVQF 91 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~ 91 (195)
..+++|||+|||..+++++|+++|.+||.|..|.|+.+. +|||||+|.+.++|+.||+.|||..|. |+.|.|.|
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 356889999999999999999999999999999998543 489999999999999999999999999 99999999
Q ss_pred cc
Q 029300 92 AK 93 (195)
Q Consensus 92 a~ 93 (195)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 86
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.70 E-value=1.2e-16 Score=125.40 Aligned_cols=83 Identities=27% Similarity=0.429 Sum_probs=78.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
..++|||+|||+.+++++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45789999999999999999999999999999999988899999999999999999999999999999999999999997
Q ss_pred cCC
Q 029300 94 YGP 96 (195)
Q Consensus 94 ~~~ 96 (195)
...
T Consensus 174 ~~~ 176 (284)
T 3smz_A 174 AGQ 176 (284)
T ss_dssp GGG
T ss_pred CCC
Confidence 643
No 190
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.69 E-value=1.1e-17 Score=122.24 Aligned_cols=85 Identities=25% Similarity=0.353 Sum_probs=73.2
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEE
Q 029300 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (195)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 89 (195)
+...+.++|||+|||..+++++|+++|..||.|..+ ++.+..++.++|||||+|.+.++|+.||+ |||..|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 345668999999999999999999999999987662 33344577888999999999999999995 9999999999999
Q ss_pred EecccCC
Q 029300 90 QFAKYGP 96 (195)
Q Consensus 90 ~~a~~~~ 96 (195)
.++....
T Consensus 86 ~~~~~~~ 92 (175)
T 1fje_B 86 EKPKGRD 92 (175)
T ss_dssp ECCCCSS
T ss_pred ecCCCcc
Confidence 9997643
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.69 E-value=5.2e-17 Score=121.01 Aligned_cols=77 Identities=32% Similarity=0.455 Sum_probs=71.8
Q ss_pred CcEEEEeCCCC-CCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecc
Q 029300 15 TYSLLVLNITF-RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 15 ~~~l~V~nLp~-~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 93 (195)
+++|||+|||+ .+++++|.++|.+||.|..|.|+.++ +|||||+|.+.++|+.|+..|||..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57899999999 99999999999999999999998764 5899999999999999999999999999999999997
Q ss_pred cCC
Q 029300 94 YGP 96 (195)
Q Consensus 94 ~~~ 96 (195)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 192
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.68 E-value=2e-16 Score=106.52 Aligned_cols=81 Identities=26% Similarity=0.331 Sum_probs=69.7
Q ss_pred CCcEEEEeCC--CCCCC--------HHHHHHHhhcCCceeEEEeccCCCC--CCcccEEEEEEccHHHHHHHHHhhCCce
Q 029300 14 DTYSLLVLNI--TFRTT--------ADDLFPLFEKYGKVVDVFIPRDRRT--GDSRGFAFVRYKYADEAQKAVDRLDGRV 81 (195)
Q Consensus 14 ~~~~l~V~nL--p~~~~--------~~~l~~~f~~~G~i~~v~~~~~~~~--g~~~g~afV~f~~~~~a~~a~~~l~g~~ 81 (195)
++.+|.|.|+ |..+. +++|+++|++||.|..|.|+.+..+ +.++|+|||+|.+.++|++|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4678999998 33333 3689999999999999999887644 3578999999999999999999999999
Q ss_pred ecCcEEEEEeccc
Q 029300 82 VDGREITVQFAKY 94 (195)
Q Consensus 82 ~~g~~l~v~~a~~ 94 (195)
|+|++|.|.|+..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999853
No 193
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.67 E-value=1e-16 Score=120.51 Aligned_cols=77 Identities=12% Similarity=0.251 Sum_probs=68.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCce--eEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCc----EE
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKV--VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR----EI 87 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i--~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~----~l 87 (195)
++.+|||+|||+.+++++|+++|++||.| ..|.|+.+. +..+|||||+|.+.++|..||..|||..|.|. ++
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 46789999999999999999999999999 889887764 45569999999999999999999999999876 57
Q ss_pred EEEec
Q 029300 88 TVQFA 92 (195)
Q Consensus 88 ~v~~a 92 (195)
.|.||
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 76665
No 194
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.66 E-value=4.6e-17 Score=109.50 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=63.3
Q ss_pred EeCCCCCCCHHHHHHHh------------hcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEE
Q 029300 20 VLNITFRTTADDLFPLF------------EKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (195)
Q Consensus 20 V~nLp~~~~~~~l~~~f------------~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 87 (195)
+.|||..+++++|.++| ++||.|..|.|+.+. ++.++|||||+|.+.++|++|+..|||..|+|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 55677777777776666 999999999998875 47889999999999999999999999999999999
Q ss_pred EEEec
Q 029300 88 TVQFA 92 (195)
Q Consensus 88 ~v~~a 92 (195)
.|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99987
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.66 E-value=2.3e-16 Score=117.51 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=70.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceec-CcEEEEE
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD-GREITVQ 90 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~-g~~l~v~ 90 (195)
.++++|||+|||..+++++|.++|.+|| .|..|.|+.+ .+|||||+|.+.++|+.|+..|||..|+ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 3478999999999999999999999999 9999998653 2489999999999999999999999999 9999999
Q ss_pred eccc
Q 029300 91 FAKY 94 (195)
Q Consensus 91 ~a~~ 94 (195)
|+++
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9975
No 196
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.66 E-value=4.8e-16 Score=118.65 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=70.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceec-CcEEEEE
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD-GREITVQ 90 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~-g~~l~v~ 90 (195)
.++++|||+|||..+++++|.++|.+|| .|..|.|+.. .+|||||+|.+.++|++|+..|||..|. |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 3468999999999999999999999999 9999998653 2489999999999999999999999999 9999999
Q ss_pred eccc
Q 029300 91 FAKY 94 (195)
Q Consensus 91 ~a~~ 94 (195)
|+++
T Consensus 224 ~a~~ 227 (229)
T 2adc_A 224 FSKS 227 (229)
T ss_dssp ECSS
T ss_pred EecC
Confidence 9975
No 197
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.65 E-value=3.7e-16 Score=107.28 Aligned_cols=81 Identities=21% Similarity=0.350 Sum_probs=70.1
Q ss_pred CCcEEEEeCCCC--CC---CHHHHHHHhhcCCceeEEEeccCCC----CCCcccEEEEEEccHHHHHHHHHhhCCceecC
Q 029300 14 DTYSLLVLNITF--RT---TADDLFPLFEKYGKVVDVFIPRDRR----TGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (195)
Q Consensus 14 ~~~~l~V~nLp~--~~---~~~~l~~~f~~~G~i~~v~~~~~~~----~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 84 (195)
++.+|+|.|+-. ++ .+++|+++|++||.|..|.|+.+.. ++..+|+|||+|.+.++|++|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 478999999842 22 3689999999999999999988754 35677999999999999999999999999999
Q ss_pred cEEEEEeccc
Q 029300 85 REITVQFAKY 94 (195)
Q Consensus 85 ~~l~v~~a~~ 94 (195)
+.|.|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999853
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.65 E-value=4.2e-16 Score=122.83 Aligned_cols=83 Identities=18% Similarity=0.315 Sum_probs=70.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
..++|||+|||+.+++++|.++|.+|| .|..|.|+.++. +.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 468999999999999999999999999 999999988764 778999999999999999999999999999999999999
Q ss_pred ccCCC
Q 029300 93 KYGPN 97 (195)
Q Consensus 93 ~~~~~ 97 (195)
.+...
T Consensus 195 ~~~~~ 199 (292)
T 2ghp_A 195 NPLEK 199 (292)
T ss_dssp CCC--
T ss_pred CCCcc
Confidence 76543
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=6.6e-16 Score=112.24 Aligned_cols=76 Identities=28% Similarity=0.505 Sum_probs=67.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcC----C-------ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCce
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKY----G-------KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV 81 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~----G-------~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~ 81 (195)
.+.++|||+|||+.+++++|.++|.+| | .|..+.+..+ +|||||+|.+.++|+.|+ .|||..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 356899999999999999999999999 6 7777776543 499999999999999999 799999
Q ss_pred ecCcEEEEEecccC
Q 029300 82 VDGREITVQFAKYG 95 (195)
Q Consensus 82 ~~g~~l~v~~a~~~ 95 (195)
|.|+.|.|.++...
T Consensus 75 ~~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 75 FQGQSLKIRRPHDY 88 (172)
T ss_dssp ETTEECEEECCSSC
T ss_pred ecCceeeecCCccc
Confidence 99999999998654
No 200
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3.2e-15 Score=99.60 Aligned_cols=76 Identities=22% Similarity=0.308 Sum_probs=64.2
Q ss_pred CcEEEEeCCC-------CCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEE
Q 029300 15 TYSLLVLNIT-------FRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (195)
Q Consensus 15 ~~~l~V~nLp-------~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 87 (195)
...|.|.-.. ..+++++|+++|.+||.|..|.|+ +.++|||||+|.+.++|+.||+.+++ +.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 5567776554 458999999999999999999987 35679999999999999999997554 679999
Q ss_pred EEEecccCCC
Q 029300 88 TVQFAKYGPN 97 (195)
Q Consensus 88 ~v~~a~~~~~ 97 (195)
.|.|++..+.
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999986654
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.64 E-value=1.1e-15 Score=118.97 Aligned_cols=81 Identities=22% Similarity=0.273 Sum_probs=73.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCC-ceec---CcEEEE
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG-RVVD---GREITV 89 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g-~~~~---g~~l~v 89 (195)
+..+|||+|||+.+++++|.++|..||.|..|.|+.+ .+|.++|||||+|.+.++|..||..||+ ..+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4678999999999999999999999999999999988 4899999999999999999999999954 4544 999999
Q ss_pred EecccC
Q 029300 90 QFAKYG 95 (195)
Q Consensus 90 ~~a~~~ 95 (195)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998753
No 202
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.63 E-value=1.3e-15 Score=113.17 Aligned_cols=75 Identities=27% Similarity=0.482 Sum_probs=65.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcC----C-------ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCcee
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKY----G-------KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~----G-------~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 82 (195)
..++|||+|||+.+++++|.++|.+| | .|..+.+.. .+|||||+|.+.++|+.|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~------~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET------TTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC------CCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 566666543 4599999999999999999 7999999
Q ss_pred cCcEEEEEecccC
Q 029300 83 DGREITVQFAKYG 95 (195)
Q Consensus 83 ~g~~l~v~~a~~~ 95 (195)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998754
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.60 E-value=3.7e-15 Score=119.58 Aligned_cols=76 Identities=29% Similarity=0.556 Sum_probs=65.4
Q ss_pred CCCCcEEEEeC--CCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceec---Cc-
Q 029300 12 IRDTYSLLVLN--ITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD---GR- 85 (195)
Q Consensus 12 ~~~~~~l~V~n--Lp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~- 85 (195)
..++.+|||+| |+..+++++|+++|++||+|..|.|.. .+|||||+|.+.++|++||+.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 35577999999 578999999999999999999988754 3599999999999999999999999883 44
Q ss_pred -EEEEEecc
Q 029300 86 -EITVQFAK 93 (195)
Q Consensus 86 -~l~v~~a~ 93 (195)
+|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57777774
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.58 E-value=1.6e-14 Score=98.45 Aligned_cols=78 Identities=23% Similarity=0.374 Sum_probs=65.9
Q ss_pred CCCcEEEEeCCCCCC----------CHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCcee
Q 029300 13 RDTYSLLVLNITFRT----------TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~----------~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 82 (195)
.++.+|.|.|+-... .+++|+++|++||.|..|.|..+. .+|||||+|.+.++|++|++.|||..|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 457789999874322 235789999999999999997653 479999999999999999999999999
Q ss_pred cCcEEEEEeccc
Q 029300 83 DGREITVQFAKY 94 (195)
Q Consensus 83 ~g~~l~v~~a~~ 94 (195)
+|+.|.|.|+..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999864
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.5e-13 Score=94.03 Aligned_cols=81 Identities=17% Similarity=0.103 Sum_probs=71.3
Q ss_pred CCCCCCCcEEEEeCCCCC-CCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEcc-HHHHHHHHHhhC--CceecC
Q 029300 9 PPDIRDTYSLLVLNITFR-TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY-ADEAQKAVDRLD--GRVVDG 84 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~-~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~-~~~a~~a~~~l~--g~~~~g 84 (195)
......++.|+|+||+.. ++.++|+++|++||+|..|.+..+. ..|||.|.+ ..+|+.|+..|| +..|.|
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 445667899999999999 9999999999999999999998875 359999999 899999999995 778999
Q ss_pred cEEEEEecccC
Q 029300 85 REITVQFAKYG 95 (195)
Q Consensus 85 ~~l~v~~a~~~ 95 (195)
..+.+++....
T Consensus 86 ~~~~~evL~Ge 96 (121)
T 1owx_A 86 KEVTWEVLEGE 96 (121)
T ss_dssp SSEEEEECCHH
T ss_pred cEEEEEECCCH
Confidence 99999887643
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=3e-13 Score=87.14 Aligned_cols=73 Identities=21% Similarity=0.314 Sum_probs=61.8
Q ss_pred CcEEEEeCCC----CCCCH----HHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcE
Q 029300 15 TYSLLVLNIT----FRTTA----DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (195)
Q Consensus 15 ~~~l~V~nLp----~~~~~----~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 86 (195)
..||+|.-++ .++.. .+|.+.|.+||.|..++|+.+. +||+|.+.++|.+||+ |||..++|+.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 4578887766 23333 6789999999999999998764 9999999999999999 9999999999
Q ss_pred EEEEecccCC
Q 029300 87 ITVQFAKYGP 96 (195)
Q Consensus 87 l~v~~a~~~~ 96 (195)
|+|+++.+..
T Consensus 78 LkV~lkt~dW 87 (91)
T 2dnr_A 78 ITIALKSPSG 87 (91)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeCCCCc
Confidence 9999997643
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=4.2e-12 Score=82.20 Aligned_cols=70 Identities=21% Similarity=0.323 Sum_probs=60.0
Q ss_pred CcEEEEeCCCCC-----CCH----HHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCc
Q 029300 15 TYSLLVLNITFR-----TTA----DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (195)
Q Consensus 15 ~~~l~V~nLp~~-----~~~----~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 85 (195)
..||+|..++.. +.. .+|.+.|.+||.|..++|+.+. +||+|.+.++|.+||+ |||..++|+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 457999888632 322 5688999999999999998764 9999999999999999 999999999
Q ss_pred EEEEEecc
Q 029300 86 EITVQFAK 93 (195)
Q Consensus 86 ~l~v~~a~ 93 (195)
.|+|.+..
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99999864
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.24 E-value=4.7e-11 Score=90.39 Aligned_cols=79 Identities=22% Similarity=0.352 Sum_probs=65.1
Q ss_pred CcEEEEeCCC-----CCCCHHHHHHHhhcCCceeEEEeccCC----CCCCcccEEEEEEccHHHHHHHHHhhCCceecCc
Q 029300 15 TYSLLVLNIT-----FRTTADDLFPLFEKYGKVVDVFIPRDR----RTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (195)
Q Consensus 15 ~~~l~V~nLp-----~~~~~~~l~~~f~~~G~i~~v~~~~~~----~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 85 (195)
...+.+.|+- ..-.+++|.+.|.+||.|..|.|+.+. .++..+|++||+|.+.++|++|+..|||..|+|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 3455555542 223467899999999999999998543 3458899999999999999999999999999999
Q ss_pred EEEEEecc
Q 029300 86 EITVQFAK 93 (195)
Q Consensus 86 ~l~v~~a~ 93 (195)
+|.|.|..
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999985
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.05 E-value=1.3e-09 Score=71.93 Aligned_cols=73 Identities=11% Similarity=0.151 Sum_probs=67.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcC-----CceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKY-----GKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~-----G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
...+|-|-|||..++...|..|+.++ |.|..|.+..+. +-|+|+|.+...|-+|..+|+|.+|.|++|.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 36789999999999999999999999 999999998876 6799999999999999999999999999999
Q ss_pred EEec
Q 029300 89 VQFA 92 (195)
Q Consensus 89 v~~a 92 (195)
|.-.
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 8754
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.58 E-value=2e-07 Score=61.26 Aligned_cols=75 Identities=17% Similarity=0.118 Sum_probs=62.6
Q ss_pred CcEEEEeCCCCCCCH-----HHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEE
Q 029300 15 TYSLLVLNITFRTTA-----DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~-----~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 89 (195)
.++|+|+||+..+-. +.++.+|..|+++....+...- .-..|.|.+.++|.+|-..|++..|+|..|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 367999999887522 4678999999988777665432 45899999999999999999999999999999
Q ss_pred EecccC
Q 029300 90 QFAKYG 95 (195)
Q Consensus 90 ~~a~~~ 95 (195)
.++.+.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 999743
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.43 E-value=2.4e-06 Score=55.12 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=62.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCC--cccEEEEEEccHHHHHHHHHhhCCceecC---c--EEE
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGD--SRGFAFVRYKYADEAQKAVDRLDGRVVDG---R--EIT 88 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~--~~g~afV~f~~~~~a~~a~~~l~g~~~~g---~--~l~ 88 (195)
++|.|.+||+.+|++++.+.+..+..+....++..+.+.. ...-|||.|.+.+++....+.++|..|.+ . +..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5799999999999999999999998887776655543322 23569999999999999999999998833 2 345
Q ss_pred EEeccc
Q 029300 89 VQFAKY 94 (195)
Q Consensus 89 v~~a~~ 94 (195)
|++|..
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 777754
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.38 E-value=1.3e-06 Score=56.46 Aligned_cols=57 Identities=25% Similarity=0.358 Sum_probs=47.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhC
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 78 (195)
...+.++| ++|+.+...||.++|..||.| .|.++.+ ..|||.|.+.+.|..||..++
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 34567777 999999999999999999954 5666655 469999999999999999763
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.35 E-value=3.4e-06 Score=56.92 Aligned_cols=74 Identities=22% Similarity=0.331 Sum_probs=60.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecC-cEEEEE
Q 029300 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG-REITVQ 90 (195)
Q Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g-~~l~v~ 90 (195)
....+.|.|-++|+.. ...|...|.+||.|.+...... ..+..|.|.+..+|++||. .||..|.| ..|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 4457889999999885 6778889999999998877322 2689999999999999999 59999985 666676
Q ss_pred ecc
Q 029300 91 FAK 93 (195)
Q Consensus 91 ~a~ 93 (195)
...
T Consensus 93 p~~ 95 (119)
T 1wwh_A 93 PCI 95 (119)
T ss_dssp ECC
T ss_pred ECC
Confidence 653
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=98.22 E-value=2.2e-06 Score=55.60 Aligned_cols=55 Identities=24% Similarity=0.349 Sum_probs=46.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhC
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 78 (195)
.+.++| ++|+.+...||.++|+.||. ..|.++.+ ..|||.|.+.+.|..||..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 456777 99999999999999999994 46666665 469999999999999999764
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=6e-05 Score=49.28 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=58.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhc-----CCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEE
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEK-----YGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~-----~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 88 (195)
...+|.|.|||+.+.++.|.-+|+. -|+|..|.... +-|+|+|.+.+.|+..|+. ....|.+..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 3568999999999999999999986 25788887743 4599999999999999883 46788888898
Q ss_pred EEeccc
Q 029300 89 VQFAKY 94 (195)
Q Consensus 89 v~~a~~ 94 (195)
|.-..+
T Consensus 78 V~P~~~ 83 (104)
T 2dhx_A 78 LRPAPP 83 (104)
T ss_dssp EEECCC
T ss_pred EEcCCC
Confidence 866543
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=98.08 E-value=1.5e-05 Score=51.77 Aligned_cols=80 Identities=14% Similarity=0.088 Sum_probs=58.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCC--cccEEEEEEccHHHHHHHHHhhCCceecC-----cE
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGD--SRGFAFVRYKYADEAQKAVDRLDGRVVDG-----RE 86 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~--~~g~afV~f~~~~~a~~a~~~l~g~~~~g-----~~ 86 (195)
..-+|.|..||+.+|++++.+.+..+-++.....+..+.+.+ ...-|||.|.+.+++....+.++|..|.+ -+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 356799999999999999988888765554443333322221 13458999999999999999999998833 23
Q ss_pred EEEEecc
Q 029300 87 ITVQFAK 93 (195)
Q Consensus 87 l~v~~a~ 93 (195)
..|++|.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 5677775
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.78 E-value=6.2e-05 Score=51.42 Aligned_cols=78 Identities=15% Similarity=0.266 Sum_probs=56.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeE-EEecc------------CCCCC-CcccEEEEEEccHHHHHHHHHhhCC
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVD-VFIPR------------DRRTG-DSRGFAFVRYKYADEAQKAVDRLDG 79 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~-v~~~~------------~~~~g-~~~g~afV~f~~~~~a~~a~~~l~g 79 (195)
....|.|-++|+..+ ..|...|++||.|.+ +.+.. .+... ....+..|+|.+..+|..||. .||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 356788899987654 557788999999876 22211 00001 124688999999999999999 699
Q ss_pred ceecCcEEEEEecc
Q 029300 80 RVVDGREITVQFAK 93 (195)
Q Consensus 80 ~~~~g~~l~v~~a~ 93 (195)
..|.|..|-|....
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999988887764
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.17 E-value=0.00022 Score=59.21 Aligned_cols=55 Identities=11% Similarity=0.265 Sum_probs=42.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHh
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 76 (195)
.+|+|. +|..+++.+|.++|++||+|..+.+..++ | .||.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 689997 79999999999999999999999887653 2 6999999999999877653
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.78 E-value=0.00063 Score=47.68 Aligned_cols=40 Identities=25% Similarity=0.167 Sum_probs=36.2
Q ss_pred CCcccEEEEEEccHHHHHHHHHhh-CCceecCcEEEEEeccc
Q 029300 54 GDSRGFAFVRYKYADEAQKAVDRL-DGRVVDGREITVQFAKY 94 (195)
Q Consensus 54 g~~~g~afV~f~~~~~a~~a~~~l-~g~~~~g~~l~v~~a~~ 94 (195)
...+|+++|+|.+.++|++|++.| ||..|+| .|.|.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 456799999999999999999999 9999999 999998764
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.72 E-value=0.0011 Score=46.76 Aligned_cols=34 Identities=12% Similarity=0.006 Sum_probs=27.1
Q ss_pred EEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCc
Q 029300 45 VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (195)
Q Consensus 45 v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~ 80 (195)
+.|+.+. ...+|||||+|.+.++|++|+..+++.
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 4555553 357899999999999999999887754
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.92 E-value=0.026 Score=47.55 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=46.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCC
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g 79 (195)
..+.++|+ +|..+...+|.++|+.||.| .|.++.+ ..|||.|.+.+.|..++..++.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 35677776 99999999999999999954 5666544 4699999999999999998853
No 222
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=94.79 E-value=0.42 Score=30.15 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=47.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhh
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l 77 (195)
....++.|.|-|+|..+-..++.-.....|---.|..+. |.|.|.|.+.++...|+..|
T Consensus 8 sikqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 8 SIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp --CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hhhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 356788999999999998888877777777666666643 67999999999999998866
No 223
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=94.49 E-value=0.13 Score=42.35 Aligned_cols=10 Identities=0% Similarity=0.189 Sum_probs=4.2
Q ss_pred cHHHHHHHHH
Q 029300 66 YADEAQKAVD 75 (195)
Q Consensus 66 ~~~~a~~a~~ 75 (195)
+.++...++.
T Consensus 115 te~~L~~~F~ 124 (437)
T 3pgw_S 115 TESKLRREFE 124 (437)
T ss_pred CHHHHHHHHH
Confidence 3344444444
No 224
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=91.26 E-value=0.62 Score=28.16 Aligned_cols=68 Identities=15% Similarity=0.167 Sum_probs=42.7
Q ss_pred EEEEeCC-CCCCCHHHHHHHhhcCC-----ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEE
Q 029300 17 SLLVLNI-TFRTTADDLFPLFEKYG-----KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (195)
Q Consensus 17 ~l~V~nL-p~~~~~~~l~~~f~~~G-----~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 90 (195)
+|||..= -..+...+|..++..-+ .|-.|.|.. .|.||+.... .|..++..|++..+.|+.+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 4566422 23467778887776544 355677644 4789888764 5777888899999999999988
Q ss_pred ecc
Q 029300 91 FAK 93 (195)
Q Consensus 91 ~a~ 93 (195)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 225
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=81.73 E-value=7.2 Score=27.69 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=37.1
Q ss_pred cEEEEeCCCC-C--------CCHHHHHHHh--hcCCceeEEEeccCCCCCCcccEEEEEEcc-HHHHHHHHH
Q 029300 16 YSLLVLNITF-R--------TTADDLFPLF--EKYGKVVDVFIPRDRRTGDSRGFAFVRYKY-ADEAQKAVD 75 (195)
Q Consensus 16 ~~l~V~nLp~-~--------~~~~~l~~~f--~~~G~i~~v~~~~~~~~g~~~g~afV~f~~-~~~a~~a~~ 75 (195)
.++.|.|+|. . ...++|.+.| ..|.++.-..+ .++ . ...|+|.|.|.+ ......|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l-~~~-~-Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPL-WNY-L-GHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEE-ECS-S-BEEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEec-ccC-C-CCceeEEEEecCChHHHHHHHH
Confidence 3578889887 2 3457899977 89988764444 432 2 355899999984 333444443
No 226
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=80.20 E-value=5.6 Score=23.10 Aligned_cols=55 Identities=11% Similarity=0.022 Sum_probs=41.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHh
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 76 (195)
..+|.|.|+.-..-...|...+.. ..|..+.+.... +.+.|+|.+.+....+|+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~------~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE------AVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE------EEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC------CEEEEEECCHHHHHHHHHH
Confidence 457889999877778889999988 788877775432 5688888866667777774
No 227
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=75.28 E-value=12 Score=23.41 Aligned_cols=35 Identities=9% Similarity=0.288 Sum_probs=27.0
Q ss_pred ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCc
Q 029300 41 KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (195)
Q Consensus 41 ~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~ 80 (195)
.|..+.++.. ..||.||++...++...++..+.|.
T Consensus 39 ~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASES-----LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCCc
Confidence 3666666532 5599999999999999998877765
No 228
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=72.16 E-value=6.5 Score=25.18 Aligned_cols=66 Identities=17% Similarity=0.265 Sum_probs=46.2
Q ss_pred EeCCCCCCCHHHHHHHh-hcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEeccc
Q 029300 20 VLNITFRTTADDLFPLF-EKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (195)
Q Consensus 20 V~nLp~~~~~~~l~~~f-~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 94 (195)
|-.++..+..++|.... ..||.-..+....+ -+.|-..+.++..+||+.|+-. ..-+.|+|-+..+
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~ 87 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVIN 87 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEEC
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecC
Confidence 44567788888887665 56898777777633 2788999999999999977644 2334455555443
No 229
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=67.84 E-value=15 Score=26.80 Aligned_cols=27 Identities=7% Similarity=0.081 Sum_probs=23.6
Q ss_pred cccEEEEEEccHHHHHHHHHhhCCcee
Q 029300 56 SRGFAFVRYKYADEAQKAVDRLDGRVV 82 (195)
Q Consensus 56 ~~g~afV~f~~~~~a~~a~~~l~g~~~ 82 (195)
.+||.|||=.+..++..||+.+.+...
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 569999999999999999998887644
No 230
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=64.14 E-value=14 Score=20.72 Aligned_cols=55 Identities=18% Similarity=0.131 Sum_probs=39.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEc---cHHHHHHHHHh
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK---YADEAQKAVDR 76 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~---~~~~a~~a~~~ 76 (195)
.++.|.|+.-..-...|...+.....|..+.+.... +-+.|.|. +.+....++..
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFAL------EQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCHHHHHHHHHH
Confidence 467888887776778899999988888877775442 56888884 34455566653
No 231
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=62.61 E-value=24 Score=21.98 Aligned_cols=67 Identities=15% Similarity=0.237 Sum_probs=46.6
Q ss_pred EeCCCCCCCHHHHHHHh-hcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecCcEEEEEecccC
Q 029300 20 VLNITFRTTADDLFPLF-EKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (195)
Q Consensus 20 V~nLp~~~~~~~l~~~f-~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 95 (195)
|-.++.-+..++|.... ..||.-..+....+. -.|-..+.++..+|++.|+- ...-+.|+|-+....
T Consensus 17 Ii~f~RPvkf~dl~qkv~~afGq~ldl~y~nnE--------L~iPL~~Q~DLDkAvelLDr-s~~mkSLRIlL~~~~ 84 (94)
T 2jrh_A 17 IIAFSRPVKYEDVEHKVTTVFGQPLDLHYMNNE--------LSILLKNQDDLDKAIDILDR-SSSMKSLRILLLSQD 84 (94)
T ss_dssp EEEECSSCCHHHHHHHHHHHHCSSEEEEEECSS--------CEEECCSHHHHHHHHHHHHH-STTTTEEEEEEEECS
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeeEEecce--------eEEeccCHHHHHHHHHHhcc-CccccceEEEEEcCC
Confidence 44567778888887766 468988888776432 67888999999999997653 233445565555443
No 232
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=62.55 E-value=19 Score=20.49 Aligned_cols=55 Identities=9% Similarity=0.097 Sum_probs=40.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEc----cHHHHHHHHHh
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK----YADEAQKAVDR 76 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~----~~~~a~~a~~~ 76 (195)
.++.|.|+.-..-...|...+.....|..+.+.... +-+.|+|. +.++...+|+.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQ------NRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGG------TEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 467888887776778899999988788777665432 56889885 45667777764
No 233
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=62.13 E-value=22 Score=22.52 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=40.0
Q ss_pred EeCCCCCCCHHHHHHHh-hcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhC
Q 029300 20 VLNITFRTTADDLFPLF-EKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (195)
Q Consensus 20 V~nLp~~~~~~~l~~~f-~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 78 (195)
|-.++.-+..++|.... ..||.-..+....+. -.|-..+.++..+||+.|+
T Consensus 33 Ii~f~RPv~f~el~~kv~~afGq~ldl~y~nnE--------L~iPL~~Q~DLDkAvelLD 84 (100)
T 2npt_B 33 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNNE--------LVIPLTTQDDLDKAVELLD 84 (100)
T ss_dssp EEEECSSCCHHHHHHHHHHHHTSCEEEEEEETT--------EEEECCCHHHHHHHHHHHH
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeeEEecce--------eEEecccHHHHHHHHHHhc
Confidence 44567788889988766 468988888776442 7888999999999999765
No 234
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=61.79 E-value=7.2 Score=33.76 Aligned_cols=55 Identities=9% Similarity=0.164 Sum_probs=39.2
Q ss_pred CCCCCCCHHHHHHHhh----cCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhh
Q 029300 22 NITFRTTADDLFPLFE----KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (195)
Q Consensus 22 nLp~~~~~~~l~~~f~----~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l 77 (195)
.++...+--+|..+|- .+|-|+++.|...+.. ....+++|.|.+.++|..|+..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P-~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTP-EYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECC-SEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCC-ccccccccccCCchhhhhhHHHH
Confidence 3455556668888883 5778888877655422 33467889999999999888765
No 235
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=64.59 E-value=1.8 Score=28.19 Aligned_cols=63 Identities=24% Similarity=0.282 Sum_probs=37.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEE--EEEEccHHHHHHHHHhhCCcee
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFA--FVRYKYADEAQKAVDRLDGRVV 82 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~a--fV~f~~~~~a~~a~~~l~g~~~ 82 (195)
.++|.|..+. .+++|..+..+.+ +..+.+......|+. .|. +-.|.+.++|..|+..|....-
T Consensus 25 ~YTLQL~a~~---~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~l~ 89 (106)
T 2lfv_A 25 HYTLQLSSSS---NYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPADVQ 89 (106)
Confidence 5667666543 4566777777765 334444432222322 333 3478999999999998765443
No 236
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=59.78 E-value=25 Score=22.73 Aligned_cols=36 Identities=14% Similarity=0.355 Sum_probs=27.0
Q ss_pred ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCce
Q 029300 41 KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV 81 (195)
Q Consensus 41 ~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~ 81 (195)
.|..|.... ..+||.|||=.+..++..|+..+.+..
T Consensus 40 ~I~Si~~~~-----~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPE-----HVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECT-----TCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecC-----CCceEEEEEeCCHHHHHHHHhccccee
Confidence 466666543 256999999999999999988765543
No 237
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=57.73 E-value=16 Score=22.86 Aligned_cols=53 Identities=8% Similarity=0.037 Sum_probs=35.3
Q ss_pred EEEeCCCCCCCHHHHHHHhh-cCC----ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhh
Q 029300 18 LLVLNITFRTTADDLFPLFE-KYG----KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (195)
Q Consensus 18 l~V~nLp~~~~~~~l~~~f~-~~G----~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l 77 (195)
|.+..+|..++.++|.+.+. -|+ ....++++-. .| -+|++.+.++.+.|+..+
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE--eG-----D~itisSd~EL~eAl~l~ 74 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE--EG-----DPCTVSSQLELEEAFRLY 74 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS--SS-----CCEECCSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC--CC-----CcccccCHHHHHHHHHHH
Confidence 55667888999998876654 233 2233444322 23 578999999999998843
No 238
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=61.28 E-value=2.3 Score=27.04 Aligned_cols=69 Identities=20% Similarity=0.349 Sum_probs=39.0
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCc-------------eeEEEeccCCC----CCCcccEEEEEEccHHHHH
Q 029300 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGK-------------VVDVFIPRDRR----TGDSRGFAFVRYKYADEAQ 71 (195)
Q Consensus 9 p~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~-------------i~~v~~~~~~~----~g~~~g~afV~f~~~~~a~ 71 (195)
..+...++-|.|-|+|..+-..++.-.....|- |..-.+..+.. .-...|.|.|.|.+.++..
T Consensus 12 dveikqnclikiinipqgtlkaevvlavrhlgyefycdyidensnqinsnliqqdqhpqlndllkegqamirfqnsdeqr 91 (137)
T 2lsl_A 12 DVEIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDENSNQINSNLIQQDQHPQLNDLLKEGQAMIRFQNSDEQR 91 (137)
Confidence 345677888899999987665554322222221 11111111100 0112478999999999888
Q ss_pred HHHHhh
Q 029300 72 KAVDRL 77 (195)
Q Consensus 72 ~a~~~l 77 (195)
-|+..|
T Consensus 92 laiqkl 97 (137)
T 2lsl_A 92 LAIQKL 97 (137)
Confidence 888765
No 239
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.42 E-value=21 Score=22.15 Aligned_cols=56 Identities=25% Similarity=0.271 Sum_probs=36.6
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-CC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHh
Q 029300 18 LLVLNITFRTTADDLFPLFEK-YG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (195)
Q Consensus 18 l~V~nLp~~~~~~~l~~~f~~-~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 76 (195)
.|+-.+...++..+|++.+++ |+ .|..|..+.-+ .|. --|||.+..-.+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~~--KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RGE--KKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TSC--EEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CCc--eEEEEEcCCCCcHHHHHHh
Confidence 344456778899999988875 66 56666554432 221 3499999877777665443
No 240
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=55.66 E-value=3.8 Score=31.41 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=25.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEec
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIP 48 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~ 48 (195)
..+.|+|||+.++...|..++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 457899999999999999999765455444443
No 241
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=55.30 E-value=22 Score=22.81 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=39.0
Q ss_pred EeCCCCCCCHHHHHHHh-hcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhC
Q 029300 20 VLNITFRTTADDLFPLF-EKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (195)
Q Consensus 20 V~nLp~~~~~~~l~~~f-~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 78 (195)
|-.++.-+..++|.... ..||.-..+....+. -.|-..+.++..+|++.|+
T Consensus 44 Iiqf~RPvkf~dl~qkv~~afGq~ldl~y~nnE--------L~IPL~~Q~DLDkAvelLD 95 (111)
T 2c60_A 44 IIAFSRPVKYEDVEHKVTTVFGQPLDLHYMNNE--------LSILLKNQDDLDKAIDILD 95 (111)
T ss_dssp EEEECSSCCHHHHHHHHHHHHSSCCEEEEECSS--------CEEECCSHHHHHHHHHHHH
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeeEEecce--------EEEecccHHHHHHHHHHhc
Confidence 34567778888887666 468988888776442 6788899999999999765
No 242
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=54.53 E-value=12 Score=28.45 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=24.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEE
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVF 46 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~ 46 (195)
...+.|+|||+.++...|..++.. +.+..+.
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~ 140 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLV 140 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEE
Confidence 356899999999999999999977 5554433
No 243
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=52.12 E-value=3.2 Score=28.76 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=16.6
Q ss_pred HHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEc
Q 029300 30 DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK 65 (195)
Q Consensus 30 ~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~ 65 (195)
+++.++|...|.|+.... .+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 455667777777665543 2389999876
No 244
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=51.76 E-value=44 Score=21.33 Aligned_cols=75 Identities=11% Similarity=0.208 Sum_probs=41.5
Q ss_pred cEEEEeCCCCCCCHHH--HHHHhhc-----C---C-----ceeEEEeccCCCC--CCcccEEEEEEccHHH---HHHHHH
Q 029300 16 YSLLVLNITFRTTADD--LFPLFEK-----Y---G-----KVVDVFIPRDRRT--GDSRGFAFVRYKYADE---AQKAVD 75 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~--l~~~f~~-----~---G-----~i~~v~~~~~~~~--g~~~g~afV~f~~~~~---a~~a~~ 75 (195)
+.|.|-|||....+.. +..+|.. | + .|..+.-..++.+ ........|.|....+ ...|..
T Consensus 4 ~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaar 83 (100)
T 2w7a_A 4 GNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAR 83 (100)
T ss_dssp TEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHHH
T ss_pred cceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHHH
Confidence 5699999998733222 3333321 2 2 3455543333221 1123467777776554 444555
Q ss_pred hhCCceecCcEEEEE
Q 029300 76 RLDGRVVDGREITVQ 90 (195)
Q Consensus 76 ~l~g~~~~g~~l~v~ 90 (195)
......+.|.+|.+.
T Consensus 84 ~k~~vtykg~pirls 98 (100)
T 2w7a_A 84 EKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHCCEEETTEEEEEE
T ss_pred HhCceeeCCcceeec
Confidence 556788899998875
No 245
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=49.93 E-value=30 Score=21.56 Aligned_cols=20 Identities=5% Similarity=0.140 Sum_probs=16.5
Q ss_pred cccEEEEEEccHHHHHHHHH
Q 029300 56 SRGFAFVRYKYADEAQKAVD 75 (195)
Q Consensus 56 ~~g~afV~f~~~~~a~~a~~ 75 (195)
......|+|.+.+.|.++..
T Consensus 52 ~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 52 HKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp CSEEEEEEESSHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHC
Confidence 34678999999999998865
No 246
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=48.80 E-value=41 Score=20.12 Aligned_cols=56 Identities=11% Similarity=0.254 Sum_probs=39.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEc----cHHHHHHHHHhh
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK----YADEAQKAVDRL 77 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~----~~~~a~~a~~~l 77 (195)
.+|.|.++.-..-...|...+.....|..+.+.... +.+.|.|. +.+....+|..+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~------~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLEN------RSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTT------TEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccC------CEEEEEECCCCCCHHHHHHHHHhc
Confidence 357788876655567788999888888877775442 56888885 345566667654
No 247
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=48.64 E-value=36 Score=19.34 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=39.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEcc----HHHHHHHHHhh
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDRL 77 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~----~~~a~~a~~~l 77 (195)
..++.|.++.-..-...|...+.....|..+.+.... +.+.|.|.. .+....++..+
T Consensus 9 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEE------KNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGG------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccC------CEEEEEECCCCCCHHHHHHHHHHC
Confidence 4568888988777788899999887777666554332 568888863 35556666643
No 248
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=48.39 E-value=30 Score=22.16 Aligned_cols=48 Identities=17% Similarity=0.283 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHhhc-CCc---eeEE-EeccCCCCCCcccEEEEEEccHHHHHHH
Q 029300 25 FRTTADDLFPLFEK-YGK---VVDV-FIPRDRRTGDSRGFAFVRYKYADEAQKA 73 (195)
Q Consensus 25 ~~~~~~~l~~~f~~-~G~---i~~v-~~~~~~~~g~~~g~afV~f~~~~~a~~a 73 (195)
..++..+|++.+.+ |+. ++.| .+......|...|||.| |.+.+.|...
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45677888777653 442 2222 34444445666777765 7777776654
No 249
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=48.17 E-value=39 Score=19.68 Aligned_cols=56 Identities=16% Similarity=0.193 Sum_probs=40.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEc----cHHHHHHHHHh
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK----YADEAQKAVDR 76 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~----~~~~a~~a~~~ 76 (195)
..+|.|.++.-..-...|...+.....|..+.+.... +.+.|.|. +.+....+++.
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 69 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDN------QEATIVYQPHLISVEEMKKQIEA 69 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTT------TEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 3467888887776777899999988888887775432 56888885 34555666664
No 250
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=48.07 E-value=37 Score=21.97 Aligned_cols=48 Identities=15% Similarity=0.078 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHhhc-CCc---eeEE-EeccCCCCCCcccEEEEEEccHHHHHHH
Q 029300 25 FRTTADDLFPLFEK-YGK---VVDV-FIPRDRRTGDSRGFAFVRYKYADEAQKA 73 (195)
Q Consensus 25 ~~~~~~~l~~~f~~-~G~---i~~v-~~~~~~~~g~~~g~afV~f~~~~~a~~a 73 (195)
..++..+|.+.+.+ |+. ++.| .+......|...|||.| |.+.+.|...
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 34677777766643 442 2222 34444445667778865 7777777653
No 251
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=48.02 E-value=31 Score=18.50 Aligned_cols=54 Identities=15% Similarity=0.146 Sum_probs=34.8
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEc---cHHHHHHHHHh
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK---YADEAQKAVDR 76 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~---~~~~a~~a~~~ 76 (195)
++.|.|+.-..-...|...+.....|..+.+.... +.+.|.|. +.+....++..
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~ 60 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEK------KSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTT------TEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCC------CEEEEEECCCCCHHHHHHHHHH
Confidence 45566665555567788888888778777765432 56788876 34455555554
No 252
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=47.19 E-value=33 Score=27.72 Aligned_cols=57 Identities=23% Similarity=0.305 Sum_probs=38.9
Q ss_pred EEEeCCCCCC----CHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCceecC
Q 029300 18 LLVLNITFRT----TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (195)
Q Consensus 18 l~V~nLp~~~----~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 84 (195)
-+||||+.-. ....+.++..+||.|..+.+. +.-+|...+.+.|+.++.. ++..+.+
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g---------~~~~vvv~~p~~~k~il~~-~~~~f~~ 77 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG---------TKTTVIVGHHQLAKEVLIK-KGKDFSG 77 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHTT-TTTTTBB
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC---------CCCEEEECCHHHHHHHHHh-CcHhhCC
Confidence 4688886432 235677778899999888774 2356777889999988863 4344433
No 253
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=45.73 E-value=34 Score=21.94 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHhhc-CC---ceeE-EEeccCCCCCCcccEEEEEEccHHHHHH
Q 029300 25 FRTTADDLFPLFEK-YG---KVVD-VFIPRDRRTGDSRGFAFVRYKYADEAQK 72 (195)
Q Consensus 25 ~~~~~~~l~~~f~~-~G---~i~~-v~~~~~~~~g~~~g~afV~f~~~~~a~~ 72 (195)
..++..+|++.+.+ |+ .++. ..+......|...|||.| |.+.+.|+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45677888776653 44 2222 244444445667778865 777777665
No 254
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=45.33 E-value=37 Score=18.54 Aligned_cols=55 Identities=18% Similarity=0.109 Sum_probs=36.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEcc---HHHHHHHHHh
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY---ADEAQKAVDR 76 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~---~~~a~~a~~~ 76 (195)
.++.|.|+.-..-...|...+.....|..+.+.... +.+.|.|.. .+....+++.
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~ 62 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFAL------EQAVVSYHGETTPQILTDAVER 62 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEEC---CHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccC------CEEEEEECCCCCHHHHHHHHHH
Confidence 357788887655567788889888778777775432 568888863 3344455554
No 255
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=43.67 E-value=32 Score=21.61 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=34.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEecc-CCCCCCcccEEEEEEc--cHHHHHHHHHhhC
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPR-DRRTGDSRGFAFVRYK--YADEAQKAVDRLD 78 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~-~~~~g~~~g~afV~f~--~~~~a~~a~~~l~ 78 (195)
.|.|.-....+.+..|..+...||.-.+|.... +...+...|..+|++. +.++.++|+..|.
T Consensus 22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~ 86 (98)
T 3ced_A 22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELI 86 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHH
Confidence 444443333455666677777787433332111 1123455688888887 3666777777664
No 256
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=43.21 E-value=19 Score=27.01 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=21.0
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCcee
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVV 43 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~ 43 (195)
.+.|+|||+.++...|..++.....+.
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~ 118 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIA 118 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcc
Confidence 588999999999998888886433333
No 257
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=42.98 E-value=41 Score=18.43 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=36.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEcc----HHHHHHHHHhh
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDRL 77 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~----~~~a~~a~~~l 77 (195)
.++.|.++.-..-...|...+.....|..+.+.... +.+.|.|.. .+....+++.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLAN------SNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTT------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccC------CEEEEEECCCcCCHHHHHHHHHHC
Confidence 357787876555556788888887777666664432 568888863 45556666643
No 258
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=41.78 E-value=43 Score=18.31 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=37.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEcc----HHHHHHHHHh
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDR 76 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~----~~~a~~a~~~ 76 (195)
.+|.|.++.-..-...|...+.....|..+.+.... +.+.|.|.. .+....++..
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 65 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAE------GTVEVTIDSSVVTLKDIVAVIED 65 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEEETTTSCHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 457888887655566788888888778777765432 568888863 4455566654
No 259
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=41.37 E-value=8.6 Score=28.96 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=23.8
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEe
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFI 47 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~ 47 (195)
...|+|||+.++...|..++...+.+..+.+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~l 128 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHF 128 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEE
Confidence 3489999999999999999986555544433
No 260
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=41.25 E-value=22 Score=28.29 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=19.1
Q ss_pred EEEEeCCCCCCCHHHHHHHhhc
Q 029300 17 SLLVLNITFRTTADDLFPLFEK 38 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~ 38 (195)
.+.|+|||++++..-|..+|..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 5789999999999988888864
No 261
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=40.95 E-value=35 Score=23.31 Aligned_cols=54 Identities=19% Similarity=0.272 Sum_probs=32.2
Q ss_pred EEeCCCCCCCHHHHHHHhhc-CC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHH
Q 029300 19 LVLNITFRTTADDLFPLFEK-YG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (195)
Q Consensus 19 ~V~nLp~~~~~~~l~~~f~~-~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~ 75 (195)
|+.-+...++..+|++.++. |+ .|..|..+.-+ .| .--|||.+....+|.....
T Consensus 82 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~g--~KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 82 LVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRP-NG--TKKAYVRLTADYDALDIAN 137 (142)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECT-TS--CEEEEEEECTTCCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CC--ceEEEEEeCCCCcHHHHHH
Confidence 34445667888888877764 45 56666544332 12 1248998886666655444
No 262
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=40.81 E-value=42 Score=27.67 Aligned_cols=54 Identities=22% Similarity=0.198 Sum_probs=35.1
Q ss_pred CCCCCCHHHHHHHhh----cCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhh
Q 029300 23 ITFRTTADDLFPLFE----KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (195)
Q Consensus 23 Lp~~~~~~~l~~~f~----~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l 77 (195)
+..+.+.-+|..+|. .+|-|+.+.+...+.. .....+++.|.+.++|..|+..+
T Consensus 194 ~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p-~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 194 LKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKP-RAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp CSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECC-SEEEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecC-ceeEEEEEEcCCHHHHHHHHHHH
Confidence 334444446666653 4567888877655432 23456889999999988887655
No 263
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=40.43 E-value=49 Score=18.60 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=37.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEc----cHHHHHHHHHhh
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK----YADEAQKAVDRL 77 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~----~~~~a~~a~~~l 77 (195)
.+|.|.++.-..-...|...+.....|..+.+.... +.+.|.|. +.+....++..+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 5 CYIQVTGMTCASCVANIERNLRREEGIYSILVALMA------GKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTT------TBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 357788887666677788999888777776654332 56888885 344556666643
No 264
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=40.00 E-value=17 Score=27.14 Aligned_cols=25 Identities=8% Similarity=-0.093 Sum_probs=20.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCC
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYG 40 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G 40 (195)
..+.|+|||+.++...|..++....
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~ 120 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKD 120 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGG
T ss_pred CcEEEEECchhccHHHHHHHHhcCC
Confidence 3488999999999999999887543
No 265
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=39.58 E-value=73 Score=20.64 Aligned_cols=31 Identities=6% Similarity=0.134 Sum_probs=14.1
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEe
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFI 47 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~ 47 (195)
+|.|.|+.-..-...|+..+.....|..+.+
T Consensus 83 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v 113 (149)
T 2ew9_A 83 ELTITGMTCASCVHNIESKLTRTNGITYASV 113 (149)
T ss_dssp EEEEESCCSHHHHHHHHHHHHHSSSCCEEEE
T ss_pred EEEEEeccCHHHHHHHHHHHhcCCCeEEEEE
Confidence 3445454433333445555554444444444
No 266
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=38.63 E-value=47 Score=17.84 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=37.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEcc----HHHHHHHHHh
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDR 76 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~----~~~a~~a~~~ 76 (195)
++.|.|+.-..-...|...+.....|..+.+.... +.+.|.|.. .+....++..
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKK------EKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 57888887766677888999888778777765432 568888863 4455555654
No 267
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=38.57 E-value=39 Score=23.31 Aligned_cols=54 Identities=26% Similarity=0.356 Sum_probs=32.9
Q ss_pred EEeCCCCCCCHHHHHHHhhc-CC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHH
Q 029300 19 LVLNITFRTTADDLFPLFEK-YG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (195)
Q Consensus 19 ~V~nLp~~~~~~~l~~~f~~-~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~ 75 (195)
|+.-+...++..+|++.++. |+ .|..|..+.-+ .| .--|||.+....+|.....
T Consensus 90 ~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p-~g--~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 90 MVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTI-TG--NKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TS--CEEEEEEECSSSCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CC--cEEEEEEcCCCCcHHHHHH
Confidence 33445667888888877765 45 56666554433 12 1348999987666665544
No 268
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=38.48 E-value=48 Score=17.98 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=37.2
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEcc---HHHHHHHHHh
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY---ADEAQKAVDR 76 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~---~~~a~~a~~~ 76 (195)
++.|.|+.-..-...|...+.....|..+.+.... +.+.|.|.. .+....+++.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPK------GTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTT------TEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccC------CEEEEEECCCCCHHHHHHHHHH
Confidence 47788887666667888889888778777775432 567788763 3455556654
No 269
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=38.34 E-value=33 Score=21.82 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhhc-CCceeEEEe----ccCCCCCCcccEEEEEEccHHHHHH
Q 029300 25 FRTTADDLFPLFEK-YGKVVDVFI----PRDRRTGDSRGFAFVRYKYADEAQK 72 (195)
Q Consensus 25 ~~~~~~~l~~~f~~-~G~i~~v~~----~~~~~~g~~~g~afV~f~~~~~a~~ 72 (195)
..++..+|.+.+.+ |+.-.++.+ ......|...|||.| |.+.+.|..
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 35677777766643 432222222 222233455666655 666665554
No 270
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=37.89 E-value=83 Score=20.49 Aligned_cols=12 Identities=17% Similarity=0.576 Sum_probs=5.3
Q ss_pred HHHHHHHhhCCc
Q 029300 69 EAQKAVDRLDGR 80 (195)
Q Consensus 69 ~a~~a~~~l~g~ 80 (195)
..+.++..+.|.
T Consensus 91 ~ie~~l~~~~gv 102 (151)
T 1p6t_A 91 RIEKRLNKIEGV 102 (151)
T ss_dssp HHHHHHTTSSSE
T ss_pred HHHHHHhcCCCc
Confidence 344444444443
No 271
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=37.58 E-value=51 Score=17.98 Aligned_cols=54 Identities=19% Similarity=0.118 Sum_probs=37.3
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEcc----HHHHHHHHHh
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDR 76 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~----~~~a~~a~~~ 76 (195)
++.|.++.-..-...|...+.....|..+.+.... +.+.|.|.. .+....++..
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 63 (72)
T 1osd_A 6 TLSVPGMTCSACPITVKKAISKVEGVSKVDVTFET------RQAVVTFDDAKTSVQKLTKATAD 63 (72)
T ss_dssp EEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEEETTTCCHHHHHHHHHH
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHh
Confidence 56777777666667788999888888777765432 568888863 4455566664
No 272
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=37.14 E-value=61 Score=22.29 Aligned_cols=48 Identities=23% Similarity=0.196 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHhhc-CCc---eeEE-EeccCCCCCCcccEEEEEEccHHHHHHH
Q 029300 25 FRTTADDLFPLFEK-YGK---VVDV-FIPRDRRTGDSRGFAFVRYKYADEAQKA 73 (195)
Q Consensus 25 ~~~~~~~l~~~f~~-~G~---i~~v-~~~~~~~~g~~~g~afV~f~~~~~a~~a 73 (195)
..++..+|.+.+.. |+. ++.| .|......|...|||.| |.+.+.|...
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 35677888777654 542 2222 34344445666777776 7777776653
No 273
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.02 E-value=21 Score=20.93 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=12.8
Q ss_pred CceeEEEeccCCCCCCcccEEEEEEcc
Q 029300 40 GKVVDVFIPRDRRTGDSRGFAFVRYKY 66 (195)
Q Consensus 40 G~i~~v~~~~~~~~g~~~g~afV~f~~ 66 (195)
|.|+.|... +..|||.|++
T Consensus 28 GtV~kV~~~--------~~~ClV~FeD 46 (68)
T 2e5p_A 28 GTIKKVDSA--------REVCLVQFED 46 (68)
T ss_dssp EEEEEEETT--------TTEEEEEETT
T ss_pred eEEEEEecC--------CcEEEEEEcc
Confidence 566666432 2679999986
No 274
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=36.37 E-value=56 Score=18.11 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=36.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEcc----HHHHHHHHHh
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDR 76 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~----~~~a~~a~~~ 76 (195)
++.|.++.-..-...|...+.....|..+.+.... +.+.|.|.. .+....++..
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 62 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEE------KNATIIYDPKLQTPKTLQEAIDD 62 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 46777776555567788888888778777765432 568888853 4555666664
No 275
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=36.28 E-value=79 Score=19.78 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=40.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEcc----HHHHHHHHHhh
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDRL 77 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~----~~~a~~a~~~l 77 (195)
.+|.|.++.-..-...|...+...-.|..+.+.... +.+.|.|.. .+....+|..+
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~------~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVAT------GRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTT------TEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 467888888777778899999988778777775432 568888873 35556666643
No 276
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=35.83 E-value=39 Score=23.39 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=30.3
Q ss_pred EeCCCCCCCHHHHHHHhhc-CC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHH
Q 029300 20 VLNITFRTTADDLFPLFEK-YG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (195)
Q Consensus 20 V~nLp~~~~~~~l~~~f~~-~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~ 75 (195)
+.-+...++..+|++.++. |+ .|..|..+.-+ .| .--|||.+....+|.....
T Consensus 93 vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~g--~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 93 VFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRP-DG--KKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECT-TS--SEEEEEEECTTSCHHHHHG
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcC-CC--ceEEEEEcCCCCcHHHHHH
Confidence 3345567777777766654 44 55566544332 11 1348888887666655543
No 277
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=35.83 E-value=27 Score=20.91 Aligned_cols=56 Identities=16% Similarity=-0.016 Sum_probs=33.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEc-cHHHHHHHHHh
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK-YADEAQKAVDR 76 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~-~~~~a~~a~~~ 76 (195)
..+|.|.++.-..-...|...+.....|..+.+.... +.+.|.|. +.+....+|+.
T Consensus 23 ~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~------~~~~V~~~~~~~~i~~~i~~ 79 (85)
T 2k2p_A 23 GLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPAS------RTVVVGGVSDAAHIAEIITA 79 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTT------TEEEEESCCCHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCC------CEEEEEecCCHHHHHHHHHH
Confidence 3456666665544456678888776666666654432 45777764 44555566654
No 278
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=35.29 E-value=39 Score=19.90 Aligned_cols=65 Identities=15% Similarity=0.096 Sum_probs=40.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCcee
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 82 (195)
...+.|.|+-+......+.|...+...|.-..|. .. +..-..-+--|.+.++|+.++..|...-+
T Consensus 7 ~~~~~vQvGaf~~~~~A~~~~~~L~~~g~~~~i~--~~---~~~yRV~vGpf~~~~~A~~~~~~L~~~g~ 71 (79)
T 1x60_A 7 SGLYKVQIGAFKVKANADSLASNAEAKGFDSIVL--LK---DGLYKVQIGAFSSKDNADTLAARAKNAGF 71 (79)
T ss_dssp CCEEEEEEEEESCHHHHHHHHHHHHHHTCCEEEE--EE---TTEEEEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEEEEcCCHHHHHHHHHHHHhCCCCeEEe--cC---CcEEEEEECCcCCHHHHHHHHHHHHHcCC
Confidence 3467889998887777777777776556333332 11 11112233468899999999888765333
No 279
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=35.23 E-value=44 Score=20.61 Aligned_cols=53 Identities=25% Similarity=0.285 Sum_probs=33.8
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-CC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHH
Q 029300 18 LLVLNITFRTTADDLFPLFEK-YG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKA 73 (195)
Q Consensus 18 l~V~nLp~~~~~~~l~~~f~~-~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a 73 (195)
.|+-.+...++..+|++.+++ || .|..|....-+ .+ .--|||.+....+|...
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~-~~--~KKA~VtL~~g~~aid~ 78 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTM-DG--EKKAVVRLSEDDDAQEV 78 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TS--SEEEEEEECTTSCHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecC-CC--ceEEEEEECCCCcHHHH
Confidence 345556788999999988865 56 56666554433 11 23489999876655443
No 280
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=35.18 E-value=23 Score=29.52 Aligned_cols=43 Identities=14% Similarity=0.024 Sum_probs=27.8
Q ss_pred HHHHHh--hcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHH
Q 029300 31 DLFPLF--EKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAV 74 (195)
Q Consensus 31 ~l~~~f--~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~ 74 (195)
+|..+| +.+|-|+.+.|...+.. .....+++.|.+.++|..|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p-~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKP-PVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECC-SEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecC-CeEEEEEEEeCCHHHHHHHH
Confidence 456666 36899998887665422 22345788898877665533
No 281
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=34.99 E-value=37 Score=27.11 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=36.0
Q ss_pred EEEeCCCCC---CCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHh
Q 029300 18 LLVLNITFR---TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (195)
Q Consensus 18 l~V~nLp~~---~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 76 (195)
-+|||+..- -....+.++..+||.|..+.+. +.-+|...+.+.++.++..
T Consensus 19 PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g---------~~~~vvv~~~~~v~~il~~ 71 (476)
T 3e6i_A 19 PIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVG---------SQRMVVMHGYKAVKEALLD 71 (476)
T ss_dssp TTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHHT
T ss_pred ccccChhhhccccHhHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHhc
Confidence 456777543 2245677888999999887763 3467888899999998864
No 282
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=34.45 E-value=48 Score=21.08 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=32.2
Q ss_pred CCCHHHHHHHhhcCCceeEEEecc-CCCCCCcccEEEEEEc-cHHHHHHHHHhhC
Q 029300 26 RTTADDLFPLFEKYGKVVDVFIPR-DRRTGDSRGFAFVRYK-YADEAQKAVDRLD 78 (195)
Q Consensus 26 ~~~~~~l~~~f~~~G~i~~v~~~~-~~~~g~~~g~afV~f~-~~~~a~~a~~~l~ 78 (195)
.+.+..|.++...||.-.+|.... +...+...|..+|++. +.++.++|+..|.
T Consensus 32 ~~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~ 86 (106)
T 3dhx_A 32 SVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQ 86 (106)
T ss_dssp CTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred ccChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHH
Confidence 455667778888898544432211 1123556688888887 4556667776654
No 283
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=34.27 E-value=1.4e+02 Score=22.12 Aligned_cols=78 Identities=10% Similarity=0.186 Sum_probs=41.7
Q ss_pred CcEEEEeCCCCCCC--HHHHHHHhhc-----CCc--------eeEEEeccCCCC--CCcccEEEEEEccHHHH---HHHH
Q 029300 15 TYSLLVLNITFRTT--ADDLFPLFEK-----YGK--------VVDVFIPRDRRT--GDSRGFAFVRYKYADEA---QKAV 74 (195)
Q Consensus 15 ~~~l~V~nLp~~~~--~~~l~~~f~~-----~G~--------i~~v~~~~~~~~--g~~~g~afV~f~~~~~a---~~a~ 74 (195)
-+.|.|-|||.... +..+..+|.. |.. |..+.=..++.+ ........|.|....+- ..|.
T Consensus 52 r~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~IIvK~~~~~~KErILkaa 131 (233)
T 2yko_A 52 RPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 131 (233)
T ss_dssp TTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCCEEEEESSHHHHHHHHHHH
T ss_pred ccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 35799999998765 3334433322 332 333322211111 11224567777765544 4444
Q ss_pred HhhCCceecCcEEEEEec
Q 029300 75 DRLDGRVVDGREITVQFA 92 (195)
Q Consensus 75 ~~l~g~~~~g~~l~v~~a 92 (195)
.......+.|.+|.+...
T Consensus 132 R~k~~vtykG~pIrlsaD 149 (233)
T 2yko_A 132 REKGRVTLKGKPIRLTVD 149 (233)
T ss_dssp HTTSCEEETTEEEEEEEC
T ss_pred HHhcccccCCCceEEeCC
Confidence 445677889999877543
No 284
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=33.77 E-value=48 Score=20.57 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=28.5
Q ss_pred ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCcee--cCcEEEEEecc
Q 029300 41 KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV--DGREITVQFAK 93 (195)
Q Consensus 41 ~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a~ 93 (195)
+|++|.+..-...|..++||-|+|.+. + .+++..+ +..-|.|.+..
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd~------f-vI~~ikVieg~~GlFVaMPs 52 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDEA------F-VIHDLRVIEGNSGLFVAMPS 52 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETTT------E-EEEEEEEEEETTEEEEECCE
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECCE------E-EEeeEEEEECCCceEEECCC
Confidence 567777765555788899999999852 1 1444433 23346666543
No 285
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=33.69 E-value=31 Score=29.33 Aligned_cols=55 Identities=5% Similarity=0.011 Sum_probs=33.0
Q ss_pred CCCCCCHHHHHHHhh----cCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhC
Q 029300 23 ITFRTTADDLFPLFE----KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (195)
Q Consensus 23 Lp~~~~~~~l~~~f~----~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 78 (195)
++...+.-+|..+|- .+|-|+++.|...+.. .....+++.|.+.++|..|+..+-
T Consensus 281 ~~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p-~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 281 GARSGAGINYKHIILGSEGTLGIITEAVMKVHAVP-QAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp ------CCCTHHHHTTCTTSSCEEEEEEEECEECC-SEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCCcchhhhhccCCCCcEEEEEEEEEEEecc-cceEEEEEEcCCHHHHHHHHHHHH
Confidence 333334446666653 4577888877665422 233567889999999888877553
No 286
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=33.60 E-value=60 Score=17.64 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=35.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEc---cHHHHHHHHHhh
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK---YADEAQKAVDRL 77 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~---~~~~a~~a~~~l 77 (195)
++.|.|+.-..-...|...+.....|..+.+.... +.+.|.|. +.+....++..+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLVT------NECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTT------TEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCHHHHHHHHHHC
Confidence 56777776555566788888888777777664432 56788875 334555566543
No 287
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=33.01 E-value=1e+02 Score=20.41 Aligned_cols=35 Identities=14% Similarity=0.037 Sum_probs=18.0
Q ss_pred CCceeEEEeccCCCCCCcccEEEEE-EccHHHHHHHHHhh
Q 029300 39 YGKVVDVFIPRDRRTGDSRGFAFVR-YKYADEAQKAVDRL 77 (195)
Q Consensus 39 ~G~i~~v~~~~~~~~g~~~g~afV~-f~~~~~a~~a~~~l 77 (195)
+-.|..|.|-.+.. ...+||. |-+.++.+.+++.|
T Consensus 43 ~vtVt~V~vS~Dl~----~AkVyvs~~~~~~~~~~~~~~L 78 (129)
T 2e7g_A 43 NVELSKVSLTPDFS----ACRAYWKTTLSAEQNAHMEAVL 78 (129)
T ss_dssp TCCEEEEEECTTSC----CEEEEECCCSCHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCc----EEEEEEEecCChhhHHHHHHHH
Confidence 34788888866641 1334555 43444433344333
No 288
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=32.65 E-value=26 Score=22.19 Aligned_cols=32 Identities=9% Similarity=-0.043 Sum_probs=25.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCcee
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVV 43 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~ 43 (195)
.+-.+.+|+|.++.. .+..+|..++..+|...
T Consensus 14 ~~l~g~~i~isg~~~-~~r~~l~~li~~~Gg~v 45 (107)
T 3l3e_A 14 KPLHKVVVCVSKKLS-KKQSELNGIAASLGADY 45 (107)
T ss_dssp CTTTTCEEEECGGGG-GGHHHHHHHHHHTTCEE
T ss_pred CCCCCeEEEEeCCCh-HhHHHHHHHHHHcCCEE
Confidence 345678899988765 67889999999988643
No 289
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=32.56 E-value=65 Score=17.69 Aligned_cols=56 Identities=11% Similarity=0.171 Sum_probs=38.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEcc----HHHHHHHHHh
Q 029300 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDR 76 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~----~~~a~~a~~~ 76 (195)
..++.|.++.-..-...|...+.....|..+.+.... +.+.|.|.. .+....++..
T Consensus 5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 64 (75)
T 1yjr_A 5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALAT------NKAHIKYDPEIIGPRDIIHTIES 64 (75)
T ss_dssp CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTT------TEEEEEECTTTTHHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 3568899988777778889999888778777765432 568888863 2344455553
No 290
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=31.86 E-value=28 Score=21.01 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=12.9
Q ss_pred CceeEEEeccCCCCCCcccEEEEEEccH
Q 029300 40 GKVVDVFIPRDRRTGDSRGFAFVRYKYA 67 (195)
Q Consensus 40 G~i~~v~~~~~~~~g~~~g~afV~f~~~ 67 (195)
|.|++|... +..|||.|++.
T Consensus 45 GTI~kV~~~--------~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKVDSA--------REVCLVQFEDD 64 (79)
T ss_dssp EEEEEEETT--------TTEEEEEETTS
T ss_pred EEEEEeccC--------CCEEEEEEcCC
Confidence 556655442 25799999863
No 291
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=31.33 E-value=36 Score=21.05 Aligned_cols=30 Identities=7% Similarity=0.266 Sum_probs=24.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCC
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYG 40 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G 40 (195)
.......|.|.+.+..++.++...++..|-
T Consensus 15 ~lNtPvvi~v~~~~q~v~~~eae~~L~~FI 44 (87)
T 2rf4_B 15 TLNTPVVIHATQLPQHVSTDEVLQFLESFI 44 (87)
T ss_dssp -CCCCCEEEESSCCEECCHHHHHHHHHHHH
T ss_pred ccCCCeEEEeecCCccCCHHHHHHHHHHHH
Confidence 445567899999999999999999988873
No 292
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=31.28 E-value=23 Score=22.46 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=15.3
Q ss_pred EeCCCCCCCHHHHHHHh-hcCCc
Q 029300 20 VLNITFRTTADDLFPLF-EKYGK 41 (195)
Q Consensus 20 V~nLp~~~~~~~l~~~f-~~~G~ 41 (195)
|.+|...+|-+||...| ...|+
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EECCCCCCcHHHHHHHHHhccCC
Confidence 44688899999988755 44453
No 293
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=31.16 E-value=1e+02 Score=20.88 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=28.6
Q ss_pred HHHHhhcCCceeEEEeccC-----CCC----------CCcccEEEEEEccHHHHHHHHH
Q 029300 32 LFPLFEKYGKVVDVFIPRD-----RRT----------GDSRGFAFVRYKYADEAQKAVD 75 (195)
Q Consensus 32 l~~~f~~~G~i~~v~~~~~-----~~~----------g~~~g~afV~f~~~~~a~~a~~ 75 (195)
...+|..||.+..+....+ +.| +..--|.+|+|.+.+...++..
T Consensus 50 a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~ 108 (141)
T 2okq_A 50 AAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQ 108 (141)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHH
Confidence 4578999997755543221 111 2234678999999988887764
No 294
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=31.15 E-value=30 Score=16.25 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=15.4
Q ss_pred CCCCCCCHHHHHHHhhcCCcee
Q 029300 22 NITFRTTADDLFPLFEKYGKVV 43 (195)
Q Consensus 22 nLp~~~~~~~l~~~f~~~G~i~ 43 (195)
|.|+++.-.--.+.|.+||.+.
T Consensus 2 naPFeiGi~ls~~~y~~yG~~L 23 (26)
T 2jsh_A 2 NAPFDVGIKLSGAQYQQHGRAL 23 (26)
T ss_dssp CSCSSTTGGGHHHHCSCSSSCC
T ss_pred CCceeEeeEecHHHHHHHhHHh
Confidence 4566666666677788998764
No 295
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=30.96 E-value=1.1e+02 Score=21.80 Aligned_cols=50 Identities=8% Similarity=-0.038 Sum_probs=32.7
Q ss_pred CcEEEEeCCCCCCCHHH--------HHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccH
Q 029300 15 TYSLLVLNITFRTTADD--------LFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYA 67 (195)
Q Consensus 15 ~~~l~V~nLp~~~~~~~--------l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~ 67 (195)
...=|+-.||.+++.++ ++++|..+|.|..+.|..+. . ..-.|.|.|.+.
T Consensus 70 lare~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~-~--~NpHaHim~t~R 127 (185)
T 2ns6_A 70 LFKEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGG-G--ENPHCHLMISER 127 (185)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEET-T--TEEEEEEEECCB
T ss_pred EEEEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCC-C--CCceEEEEEeec
Confidence 34556778999998765 44566677888888877532 1 223677766643
No 296
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=30.62 E-value=42 Score=22.86 Aligned_cols=34 Identities=15% Similarity=0.364 Sum_probs=26.4
Q ss_pred eeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCc
Q 029300 42 VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (195)
Q Consensus 42 i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~ 80 (195)
|..+.++.. ..||.||++...++...++..+.|.
T Consensus 33 i~~v~vp~~-----fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPSR-----VKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeecC-----CCcEEEEEEEchHHHHHHHhCCCCE
Confidence 566666532 4599999999999999998887776
No 297
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=30.54 E-value=79 Score=22.78 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=36.9
Q ss_pred CHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCc------eecCc-EEEEE
Q 029300 28 TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR------VVDGR-EITVQ 90 (195)
Q Consensus 28 ~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~------~~~g~-~l~v~ 90 (195)
.+++|...+..|.++ -+..+.-+...||++.+.++...++..|.|. .++|. .|...
T Consensus 66 ~~~~I~~Ei~aYnpL-------iP~~~~l~ATl~IE~~d~~er~~~L~~L~Gie~~v~l~v~~~~~V~ai 128 (194)
T 3fjv_A 66 DEDGIQAELDAYLPL-------VPDGSNLKATLQIEYENETQRRAALARLVGIEDRVFLRVDDEAPVYAI 128 (194)
T ss_dssp SHHHHHHHHHHHGGG-------CCCSSEEEEEEEECCSSHHHHHHHHHHTTTGGGSEEEEETTSCCEECE
T ss_pred CHHHHHHHHHHhccc-------CCCCCcEEEEEEEEcCCHHHHHHHHHHhcCccceEEEEECCcceeeee
Confidence 445555555555543 1223444566899999999999999999887 34665 45433
No 298
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=30.27 E-value=73 Score=17.56 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=38.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEcc--HHHHHHHHHhh
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY--ADEAQKAVDRL 77 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~--~~~a~~a~~~l 77 (195)
.++.|.|+.-..-...|...+.....|..+.+.... +.+.|.|.. .+....++..+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~------~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 5 YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFAT------EKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTT------TEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecC------CEEEEEECCCCHHHHHHHHHHc
Confidence 357888887766677889999888778777775432 567888874 34445555543
No 299
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=30.21 E-value=32 Score=20.18 Aligned_cols=9 Identities=11% Similarity=0.294 Sum_probs=7.8
Q ss_pred cEEEEEEcc
Q 029300 58 GFAFVRYKY 66 (195)
Q Consensus 58 g~afV~f~~ 66 (195)
|.|+|.|++
T Consensus 42 gtC~V~F~D 50 (66)
T 2eqj_A 42 QSCFIIFED 50 (66)
T ss_dssp TEEEEEETT
T ss_pred cEEEEEEcc
Confidence 789999985
No 300
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=29.56 E-value=48 Score=18.10 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=31.2
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHh
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 76 (195)
++.|.|+.-..-...|...+... .|..+.+.... +.+.|.|...+....++..
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~------~~~~v~~~~~~~i~~~i~~ 56 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEE------KKVVVETENLDSVLKKLEE 56 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTT------TEEEEECSCHHHHHHHHHT
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCC------CEEEEEECCHHHHHHHHHH
Confidence 35565655444456677777777 66666654432 5678888754344445543
No 301
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=28.99 E-value=32 Score=15.49 Aligned_cols=12 Identities=33% Similarity=0.683 Sum_probs=9.6
Q ss_pred HHHHHHHhhcCC
Q 029300 29 ADDLFPLFEKYG 40 (195)
Q Consensus 29 ~~~l~~~f~~~G 40 (195)
..+++.+|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 467889998887
No 302
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=28.61 E-value=1.4e+02 Score=20.17 Aligned_cols=47 Identities=30% Similarity=0.377 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHhh-cCCc---eeEE-EeccCCCCCCcccEEEEEEccHHHHHH
Q 029300 25 FRTTADDLFPLFE-KYGK---VVDV-FIPRDRRTGDSRGFAFVRYKYADEAQK 72 (195)
Q Consensus 25 ~~~~~~~l~~~f~-~~G~---i~~v-~~~~~~~~g~~~g~afV~f~~~~~a~~ 72 (195)
..++..+|.+.+. .|+. ++.| .|......|...|||.| |.+.+.|..
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 3577889988875 4552 2222 33344445666777766 777777665
No 303
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=28.43 E-value=71 Score=16.83 Aligned_cols=54 Identities=13% Similarity=0.176 Sum_probs=35.4
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEcc----HHHHHHHHHh
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDR 76 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~----~~~a~~a~~~ 76 (195)
++.|.++.-..-...|...+.....|..+.+.... +.+.|.|.. .+....++..
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 62 (69)
T 2qif_A 5 TLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEA------GKVDVSFDADKVSVKDIADAIED 62 (69)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 57788876555556688888887777777664432 567888863 3445555654
No 304
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.96 E-value=1.1e+02 Score=18.72 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=34.0
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEc-cHHHHHHHHHh
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK-YADEAQKAVDR 76 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~-~~~~a~~a~~~ 76 (195)
+|.|. +.-..-...|+..+.....|..+.+.... +.+.|.|. +.+....+|+.
T Consensus 22 ~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~------~~~~V~~~~~~~~i~~~i~~ 75 (98)
T 2crl_A 22 EFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLED------QMVLVHTTLPSQEVQALLEG 75 (98)
T ss_dssp EEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETTT------TEEEEEESSCHHHHHHHHHT
T ss_pred EEEEe-eECHHHHHHHHHHHHcCCCceEEEEECCC------CEEEEEEeCCHHHHHHHHHH
Confidence 35555 44434456788888888778777775442 56777775 45566666664
No 305
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=27.90 E-value=77 Score=25.46 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=29.1
Q ss_pred EEEeCCCCCC--CHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHH
Q 029300 18 LLVLNITFRT--TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (195)
Q Consensus 18 l~V~nLp~~~--~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~ 75 (195)
-+||||..-. ....+.++..+||.|..+.+. +.-+|...+.+.++.++.
T Consensus 18 P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~dp~~i~~il~ 68 (507)
T 3pm0_A 18 PLIGNAAAVGQAAHLSFARLARRYGDVFQIRLG---------SCPIVVLNGERAIHQALV 68 (507)
T ss_dssp ----------CCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHT
T ss_pred CeeCchhhcCccHHHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHH
Confidence 4577765332 245577788899999887763 345777788988888874
No 306
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=27.88 E-value=80 Score=17.24 Aligned_cols=55 Identities=15% Similarity=0.130 Sum_probs=37.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEc----cHHHHHHHHHh
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK----YADEAQKAVDR 76 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~----~~~~a~~a~~~ 76 (195)
.++.|.++.-..-...|...+.....|..+.+.... +.+.|.|. +.+....++..
T Consensus 8 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 66 (76)
T 1opz_A 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLAT------ETVNVIYDPAETGTAAIQEKIEK 66 (76)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGG------TEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 468888887766677788989887777776654332 56788885 34455556654
No 307
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=27.87 E-value=66 Score=20.49 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=28.2
Q ss_pred ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhhCCcee--cCcEEEEEecc
Q 029300 41 KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV--DGREITVQFAK 93 (195)
Q Consensus 41 ~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a~ 93 (195)
+|++|.|..-...|..++||-|+|.+. + .+++..+ +..-|.|.+..
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd~------f-vI~dIkVieg~~GlFVaMPS 52 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDHE------F-VVHDIRVIDGNNGLFVAMPS 52 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETTT------E-EEEEEEEEEETTEEEEECCE
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECCE------E-EEeeEEEEECCCceEEECCC
Confidence 567777755555688899999999752 1 1444433 23446665543
No 308
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=27.14 E-value=85 Score=17.34 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=35.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEc-cHHHHHHHHHh
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK-YADEAQKAVDR 76 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~-~~~~a~~a~~~ 76 (195)
.++.| ++.-..-...|+..+.....| .+.+.... +-+.|++. +.+....+++.
T Consensus 4 ~~~~v-gm~C~~C~~~i~~~l~~~~gV-~v~v~~~~------~~~~v~~~~~~~~i~~~i~~ 57 (68)
T 3iwl_A 4 HEFSV-DMTCGGCAEAVSRVLNKLGGV-KYDIDLPN------KKVCIESEHSMDTLLATLKK 57 (68)
T ss_dssp EEEEE-CCCSHHHHHHHHHHHHHHCSE-EEEEETTT------TEEEEEESSCHHHHHHHHHT
T ss_pred EEEEE-CcCcHHHHHHHHHHHHcCCCe-EEEEEcCC------CEEEEEecCCHHHHHHHHHH
Confidence 45777 777665667788888877777 77765542 45677774 55666666664
No 309
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=27.12 E-value=81 Score=20.32 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=20.7
Q ss_pred CCcccEEEEEEccHHHHHHHHHhhCCce
Q 029300 54 GDSRGFAFVRYKYADEAQKAVDRLDGRV 81 (195)
Q Consensus 54 g~~~g~afV~f~~~~~a~~a~~~l~g~~ 81 (195)
+......-+.|.+.|+|.+.++. ||..
T Consensus 48 ~D~~~qv~L~F~skE~AiayAek-~G~~ 74 (106)
T 2jya_A 48 SDMKQQVKLTFETQEQAEAYAQR-KGIE 74 (106)
T ss_dssp CCSEEEEEEEESSHHHHHHHHHH-HTCE
T ss_pred CCccccceEecCCHHHHHHHHHH-cCCE
Confidence 44555678999999999998885 6654
No 310
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=26.93 E-value=1.3e+02 Score=19.32 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=30.8
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-------CCceeEEEeccCCCCCCccc--EE-EEEEccHHHHHH
Q 029300 18 LLVLNITFRTTADDLFPLFEK-------YGKVVDVFIPRDRRTGDSRG--FA-FVRYKYADEAQK 72 (195)
Q Consensus 18 l~V~nLp~~~~~~~l~~~f~~-------~G~i~~v~~~~~~~~g~~~g--~a-fV~f~~~~~a~~ 72 (195)
|.+-.|...++++++..+... ...|..+.+-.+.. +...| +| +++|++.++.+.
T Consensus 25 IVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~ 88 (116)
T 3bgu_A 25 IALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRA 88 (116)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHH
Confidence 445568888888766555433 34566666655432 22223 34 467888776654
No 311
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=26.86 E-value=72 Score=20.53 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=19.0
Q ss_pred ceeEEEeccCCCCCCcccEEEEEEcc
Q 029300 41 KVVDVFIPRDRRTGDSRGFAFVRYKY 66 (195)
Q Consensus 41 ~i~~v~~~~~~~~g~~~g~afV~f~~ 66 (195)
+|++|.|..-...|..++||-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 46667665544567888999999975
No 312
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=26.75 E-value=1.1e+02 Score=18.99 Aligned_cols=62 Identities=10% Similarity=0.105 Sum_probs=35.3
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEecc-CCCCCCcccEEEEEEcc-HHHHHHHHHhhC
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPR-DRRTGDSRGFAFVRYKY-ADEAQKAVDRLD 78 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~-~~~~g~~~g~afV~f~~-~~~a~~a~~~l~ 78 (195)
.|.|.-....+.+..|..+...||--..|.... +...+...|..+|++.- .++.++|+..|.
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~ 88 (100)
T 2qsw_A 25 IVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLR 88 (100)
T ss_dssp EEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHH
Confidence 444443344566667777878887543332211 11234556888888873 455667776653
No 313
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=26.69 E-value=1.2e+02 Score=18.83 Aligned_cols=62 Identities=15% Similarity=0.090 Sum_probs=37.0
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCceeEEEecc-CCCCCCcccEEEEEEcc-HHHHHHHHHhhC
Q 029300 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPR-DRRTGDSRGFAFVRYKY-ADEAQKAVDRLD 78 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~-~~~~g~~~g~afV~f~~-~~~a~~a~~~l~ 78 (195)
.|.|.-....+.+..|..+...||--.+|.... +...+...|..+|++.- .++.++|+..|.
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~ 88 (101)
T 2qrr_A 25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLR 88 (101)
T ss_dssp EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHH
Confidence 455554455567777888888898544432211 11234556888888873 455667776653
No 314
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=26.68 E-value=90 Score=18.59 Aligned_cols=33 Identities=12% Similarity=0.035 Sum_probs=24.1
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCcee
Q 029300 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVV 43 (195)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~ 43 (195)
...-.+.+++|.++.. ...++|..++..+|...
T Consensus 5 ~~~f~g~~~~i~g~~~-~~~~~l~~~i~~~GG~~ 37 (92)
T 4id3_A 5 SKIFKNCVIYINGYTK-PGRLQLHEMIVLHGGKF 37 (92)
T ss_dssp -CTTTTCEEEECSCCS-SCHHHHHHHHHHTTCEE
T ss_pred ccccCCEEEEEeCCCC-cCHHHHHHHHHHCCCEE
Confidence 3445678999998653 36788999999988653
No 315
>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual specific phosphatase, COMP with peptide, hydrolase; 2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A
Probab=26.63 E-value=1.4e+02 Score=20.72 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=21.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCc
Q 029300 14 DTYSLLVLNITFRTTADDLFPLFEKYGK 41 (195)
Q Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~ 41 (195)
.+..+++...|...+.++..+++..+|.
T Consensus 35 ~~~r~I~tq~P~~~t~~~~~~~L~~~gi 62 (189)
T 3rz2_A 35 KNMRFLITHNPTNATLNKFIEELKKYGV 62 (189)
T ss_dssp TTEEEEEECCCCTTTHHHHHHHHHTTTE
T ss_pred CCCeEEEeCCCCcccHHHHHHHHHHcCC
Confidence 3466778888988888888888888863
No 316
>1rlh_A Conserved hypothetical protein; structural genomics, T. acidophilum, PSI, protein structure initiative; 1.80A {Thermoplasma acidophilum} SCOP: d.256.1.1
Probab=26.50 E-value=1.4e+02 Score=20.86 Aligned_cols=30 Identities=20% Similarity=0.152 Sum_probs=23.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCC
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYG 40 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G 40 (195)
+.++++.|.|+.-.+--|-+||.+.+-.-.
T Consensus 22 e~Pe~~NvIlGqsHFIKTVEDl~Ealv~sv 51 (173)
T 1rlh_A 22 VIPAEANIIVGYSHFIKTVEDLNEIIRTHV 51 (173)
T ss_dssp CCCTTCEEEEEEESSCCCTHHHHHHTGGGS
T ss_pred cCCCCceEEEeeccccccHHHHHHHHhhcC
Confidence 456678899999888889999988875443
No 317
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=26.06 E-value=1.4e+02 Score=19.35 Aligned_cols=57 Identities=9% Similarity=0.113 Sum_probs=32.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhh-------cCCceeEEEeccCCCC-CCccc--EE-EEEEccHHHHHHH
Q 029300 17 SLLVLNITFRTTADDLFPLFE-------KYGKVVDVFIPRDRRT-GDSRG--FA-FVRYKYADEAQKA 73 (195)
Q Consensus 17 ~l~V~nLp~~~~~~~l~~~f~-------~~G~i~~v~~~~~~~~-g~~~g--~a-fV~f~~~~~a~~a 73 (195)
-|.+-.|...++++++.+++. +...|..+.+-.+... +...+ ++ +++|++.++.+.-
T Consensus 23 HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y 90 (121)
T 3bb5_A 23 HLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAY 90 (121)
T ss_dssp EEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHH
Confidence 345557888888776544433 3556777766554321 22233 34 4688888766543
No 318
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=25.73 E-value=1.1e+02 Score=17.91 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=28.9
Q ss_pred CCHHHHHHHhhcCC-ceeEEEeccCCCCCCcccEEE--EEEccHHHHHHHHHhhCC
Q 029300 27 TTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAF--VRYKYADEAQKAVDRLDG 79 (195)
Q Consensus 27 ~~~~~l~~~f~~~G-~i~~v~~~~~~~~g~~~g~af--V~f~~~~~a~~a~~~l~g 79 (195)
-.-.+|..+|...| .|..+.+.... + ..... |+..+.+....+++.|..
T Consensus 17 G~L~~I~~~la~~~inI~~i~~~~~~--~--~~~~~i~v~~~~~~~l~~l~~~L~~ 68 (88)
T 2ko1_A 17 GMTNQITGVISKFDTNIRTIVLNAKD--G--IFTCNLMIFVKNTDKLTTLMDKLRK 68 (88)
T ss_dssp THHHHHHHHHTTSSSCEEEEEEEECS--S--EEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHCCCCeEEEEEEEcC--C--EEEEEEEEEECCHHHHHHHHHHHhc
Confidence 34577888898876 67777664431 1 12222 334456676777776654
No 319
>2ekm_A Hypothetical protein ST1511; NPPSFA, national project on protein ST and functional analyses, riken structural genomics/proteomi initiative; 2.06A {Sulfolobus tokodaii}
Probab=24.93 E-value=1.7e+02 Score=20.15 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=25.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCceeEE
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDV 45 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v 45 (195)
+.++++.|.|+.-++--|-+||.+.+-.-.+-..+
T Consensus 11 e~Pe~~NvI~GqsHFIKTvEDl~Ealv~svP~ikF 45 (162)
T 2ekm_A 11 EIPEGTNVIIGQSHFIKTVEDLYETLASSSPHLKF 45 (162)
T ss_dssp CCCTTEEEEEEECCSTTHHHHHHHHHHTTCSSCEE
T ss_pred cCCCCceEEEeeccccccHHHHHHHHhhcCCCCeE
Confidence 34567889999999988999998887654433333
No 320
>1wvq_A Hypothetical protein PAE2307; phosphorylated histidine, structural genomics, unknown funct; HET: NEP; 1.45A {Pyrobaculum aerophilum} PDB: 2gl0_A* 2jb7_A*
Probab=24.43 E-value=1.8e+02 Score=20.17 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=24.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCc
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGK 41 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~ 41 (195)
+.++++.|.||.-++--|-+||.+.+-.-.+
T Consensus 14 e~Pe~~NvI~GqsHFIKTVEDl~Ealv~svP 44 (167)
T 1wvq_A 14 PIPQGTNVIIGQAHFIKTVEDLYEALVTSVP 44 (167)
T ss_dssp CCCTTCEEEEEECCSTTHHHHHHHHHHTTCT
T ss_pred cCCCCceEEEeeccccccHHHHHHHHhhcCC
Confidence 3456788999999998899999888765443
No 321
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=24.39 E-value=1.6e+02 Score=19.39 Aligned_cols=72 Identities=13% Similarity=0.265 Sum_probs=41.4
Q ss_pred cEEEEeCCCCCCCHHHH---HHHhhcCCceeEEEeccCCCCCCcccEEEEEEc--cHHHHHHHHHhh-------CCc---
Q 029300 16 YSLLVLNITFRTTADDL---FPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK--YADEAQKAVDRL-------DGR--- 80 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l---~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~--~~~~a~~a~~~l-------~g~--- 80 (195)
-.|.|.++|..+..+-- ..+-..|.--....|+ |...|...|.|. +.+..++|++.| .|.
T Consensus 43 l~i~itgvpeqvrkelakeaerl~~efni~v~y~im-----gsgsgvm~i~f~gddlea~ekalkemirqarkfagtvty 117 (170)
T 4hhu_A 43 LVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIM-----GSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTY 117 (170)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEE-----CTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEE-----eCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEE
Confidence 35778899977654321 1222334322233332 223367778886 778888887654 444
Q ss_pred eecCcEEEEEec
Q 029300 81 VVDGREITVQFA 92 (195)
Q Consensus 81 ~~~g~~l~v~~a 92 (195)
.+.|..|.+.+.
T Consensus 118 tl~gn~l~i~it 129 (170)
T 4hhu_A 118 TLSGNRLVIVIT 129 (170)
T ss_dssp EECSSEEEEEEE
T ss_pred EEeCCEEEEEEe
Confidence 467888777665
No 322
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=24.22 E-value=34 Score=20.70 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=32.6
Q ss_pred EeCCCCCCCHHHHHHHh-hcCCc--------eeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhh
Q 029300 20 VLNITFRTTADDLFPLF-EKYGK--------VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (195)
Q Consensus 20 V~nLp~~~~~~~l~~~f-~~~G~--------i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l 77 (195)
+--+|..++..+|.... .+++. ...++..- ..| -||.+.+.++.+.|++.+
T Consensus 5 ~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD--EdG-----D~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 5 TLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD--EDG-----DFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp EEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE--TTT-----EEEECCSTTHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc--CCC-----CEEEEcCHHHHHHHHHHH
Confidence 33468888888876544 45552 12333322 132 899999999999998865
No 323
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=24.06 E-value=1.3e+02 Score=24.04 Aligned_cols=38 Identities=13% Similarity=0.097 Sum_probs=29.3
Q ss_pred HHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHh
Q 029300 30 DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (195)
Q Consensus 30 ~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 76 (195)
..|.++..+||+|..+.+. +.-+|.+.+.+.++.++..
T Consensus 36 ~~~~~l~~kYG~i~~~~~g---------~~~~vvv~dp~~~~~il~~ 73 (487)
T 3n9y_A 36 LHHVQNFQKYGPIYREKLG---------NVESVYVIDPEDVALLFKS 73 (487)
T ss_dssp HHHHHHHHHHCSEEEEEET---------TEEEEEECCHHHHHHHHHT
T ss_pred HHHHHHHHHcCceeeccCC---------CCCEEEEcCHHHHHHHHHh
Confidence 4567788899999888763 2357888899999988763
No 324
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=23.98 E-value=1.2e+02 Score=19.33 Aligned_cols=81 Identities=20% Similarity=0.223 Sum_probs=42.2
Q ss_pred CCCCCCCCCCCCcEEEEe----------CCCCCCCHHHHHHHhh-cCCceeEEEeccCCCCCCcccEEEEEEccHHHHHH
Q 029300 4 FGKSGPPDIRDTYSLLVL----------NITFRTTADDLFPLFE-KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQK 72 (195)
Q Consensus 4 ~~~~~p~~~~~~~~l~V~----------nLp~~~~~~~l~~~f~-~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~ 72 (195)
-|.++|.......+|-|. ..+..+++++|..++. .|| +..+.|.+-...+ =-|...+..+.+.
T Consensus 3 ~~~~~~~~m~~~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~-L~~~~IkY~DEen-----D~V~i~Sq~E~eE 76 (101)
T 1wj6_A 3 SGSSGPHSMEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD-LNTIQIKYLDEEN-----EEVSINSQGEYEE 76 (101)
T ss_dssp CSSCCCCSSCSCEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHC-CSSBCCEEECTTS-----CEECCCSHHHHHH
T ss_pred CCCCCccccCccEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcC-CCceEEEEecCCC-----CEEEEecHHHHHH
Confidence 355666666555555332 2345899999998885 354 2222221111111 2355566667777
Q ss_pred HHHhhCCceecCcEEEEEecc
Q 029300 73 AVDRLDGRVVDGREITVQFAK 93 (195)
Q Consensus 73 a~~~l~g~~~~g~~l~v~~a~ 93 (195)
|+... .-.|..|.+...+
T Consensus 77 Alkva---~k~~n~L~m~V~~ 94 (101)
T 1wj6_A 77 ALKMA---VKQGNQLQMQVHE 94 (101)
T ss_dssp HHHHH---HHHTSEEEEECCB
T ss_pred HHHHh---ccCCCEEEEEEee
Confidence 76621 1124556666654
No 325
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=23.51 E-value=2e+02 Score=21.93 Aligned_cols=35 Identities=14% Similarity=-0.100 Sum_probs=22.9
Q ss_pred cEEEEEEccHHHHHHHHHhhCCceecCcEEEEEec
Q 029300 58 GFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (195)
Q Consensus 58 g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 92 (195)
..+|..|.+.+.|+++.+.|...-+.+..+.+...
T Consensus 259 ptvfal~~~~~~a~~~~~~l~~~g~~~~v~~~~~~ 293 (306)
T 3pyf_A 259 PTCAFLCTSASSAIDVGAQLSGAGVCRTVRVATGP 293 (306)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHTTSSSEEEEEEEC
T ss_pred hhheEEeCCHHHHHHHHHHHHhcCCcceEEEeecC
Confidence 46788888888888887777644344455544443
No 326
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=23.14 E-value=1.4e+02 Score=23.77 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=32.3
Q ss_pred EEeCCCCC--CCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHH
Q 029300 19 LVLNITFR--TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (195)
Q Consensus 19 ~V~nLp~~--~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~ 75 (195)
+|||+..- -....|.++..+||+|..+.+. |.-+|...+.+.++.++.
T Consensus 22 ~iG~~~~~~~~~~~~~~~~~~kYG~i~~~~~~---------~~~~vvv~~~~~i~~il~ 71 (461)
T 3ld6_A 22 FLGHAIAFGKSPIEFLENAYEKYGPVFSFTMV---------GKTFTYLLGSDAAALLFN 71 (461)
T ss_dssp TTBTHHHHHHCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHH
T ss_pred eeeeHHHhhhCHHHHHHHHHHHhCCEEEEEEC---------CccEEEEeCHHHHHHHHh
Confidence 45665321 1234577888899999888774 345677778888887765
No 327
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=23.08 E-value=1.3e+02 Score=20.84 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=26.5
Q ss_pred CCHHHHHHHhhcCCce---eEEEeccCCCCCCcccEEEE
Q 029300 27 TTADDLFPLFEKYGKV---VDVFIPRDRRTGDSRGFAFV 62 (195)
Q Consensus 27 ~~~~~l~~~f~~~G~i---~~v~~~~~~~~g~~~g~afV 62 (195)
.++++|.++-.+.|.+ ..+.|..+..+|..+.+||-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 5889999999999987 34555555347877777764
No 328
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=23.07 E-value=1.8e+02 Score=22.18 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=28.1
Q ss_pred HHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhh
Q 029300 32 LFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (195)
Q Consensus 32 l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l 77 (195)
|++.|+.+|.-.-..+ .|..-|+-||-|-+.+.|+.+++.|
T Consensus 47 ~~~~~~~~~~~~~~~~-----~ga~gg~~~~~~~~~~~a~~~~~~l 87 (291)
T 1o57_A 47 IKQTFEQQGIGTLLTV-----PGAAGGVKYIPKMKQAEAEEFVQTL 87 (291)
T ss_dssp HHHHHHHTTSEEEEEE-----CSTTCEEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEe-----cCCCCceEEcccCCHHHHHHHHHHH
Confidence 4578888774422333 4555588899999999888877654
No 329
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=22.81 E-value=30 Score=20.70 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=14.4
Q ss_pred CHHHHHHHhhcCCceeEE
Q 029300 28 TADDLFPLFEKYGKVVDV 45 (195)
Q Consensus 28 ~~~~l~~~f~~~G~i~~v 45 (195)
|--||.+++.+||.|+.+
T Consensus 4 tlYDVqQLLK~fG~~IY~ 21 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVYF 21 (72)
T ss_dssp SHHHHHHHHHTTTCCCCC
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 556899999999987553
No 330
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=22.78 E-value=79 Score=19.90 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=16.7
Q ss_pred CCHHHHHHHhhcCCceeEEEec
Q 029300 27 TTADDLFPLFEKYGKVVDVFIP 48 (195)
Q Consensus 27 ~~~~~l~~~f~~~G~i~~v~~~ 48 (195)
.+++.|.++|...|.|..-.+.
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF 25 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF 25 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET
T ss_pred hHHHHHHHHHhccCCceEeecc
Confidence 3567788999999998775553
No 331
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=22.58 E-value=98 Score=16.42 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=36.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEcc----HHHHHHHHHh
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDR 76 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~----~~~a~~a~~~ 76 (195)
.++.|.++.-..-...|...+.....|..+.+.... +.+.|.|.. .+....++..
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 63 (71)
T 2ldi_A 5 QQMQVGGMRCAACASSIERALERLKGVAEASVTVAT------GRLTVTYDPKQVSEITIQERIAA 63 (71)
T ss_dssp EEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTT------TEEEEEECTTTCCTHHHHHHHHT
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 357888887666667788888887777777664432 567788763 3445555654
No 332
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.46 E-value=1.6e+02 Score=19.21 Aligned_cols=30 Identities=7% Similarity=-0.014 Sum_probs=24.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCcee
Q 029300 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVV 43 (195)
Q Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i~ 43 (195)
-.+.+|+|.++. ..+.++|..++..+|...
T Consensus 23 f~g~~i~itG~~-~~~r~~l~~~i~~~Gg~v 52 (129)
T 2d8m_A 23 LQGVVVVLSGFQ-NPFRSELRDKALELGAKY 52 (129)
T ss_dssp STTEEEEEESCC-TTHHHHHHHHHHHTTEEE
T ss_pred CCCeEEEEeCCC-cHHHHHHHHHHHHcCCEE
Confidence 457889999987 557788999999998653
No 333
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.12 E-value=20 Score=20.68 Aligned_cols=10 Identities=10% Similarity=0.272 Sum_probs=7.9
Q ss_pred ccEEEEEEcc
Q 029300 57 RGFAFVRYKY 66 (195)
Q Consensus 57 ~g~afV~f~~ 66 (195)
+..|||.|++
T Consensus 35 ~~~ClV~FeD 44 (63)
T 2e5q_A 35 KQSCLVTFED 44 (63)
T ss_dssp TSEEEEEETT
T ss_pred CCEEEEEEcc
Confidence 3679999986
No 334
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=21.94 E-value=37 Score=28.65 Aligned_cols=43 Identities=19% Similarity=0.140 Sum_probs=27.7
Q ss_pred HHHHhh--cCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHH
Q 029300 32 LFPLFE--KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (195)
Q Consensus 32 l~~~f~--~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~ 75 (195)
|..+|. .+|-|+++.|...+.. .....+++.|.+.++|..|+.
T Consensus 250 l~~L~~~GtlGiIt~~tl~l~p~p-~~~~~~~~~f~~~~~a~~~~~ 294 (560)
T 1e8g_A 250 IDGLFSQSNMGIVTKIGIWLMPNP-GGYQSYLITLPKDGDLKQAVD 294 (560)
T ss_dssp CGGGGSSSSSEEEEEEEEECEECC-SCEEEEEEEECSTTHHHHHHH
T ss_pred hhcccccCcEEEEEEEEEEEEeCC-CceEEEEEEcCCHHHHHHHHH
Confidence 344453 4788888877665432 233567888998888766543
No 335
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.83 E-value=1.4e+02 Score=20.63 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=31.2
Q ss_pred EEeCCCCCCCHHHHHHHhhc-CC-ceeEEEeccCCCCCCcccEEEEEEccHHHHHHHH
Q 029300 19 LVLNITFRTTADDLFPLFEK-YG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAV 74 (195)
Q Consensus 19 ~V~nLp~~~~~~~l~~~f~~-~G-~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~ 74 (195)
|+..+...++..+|++.++. || .|..|..+.-+. | .--|||.+....+|....
T Consensus 96 yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-~--~KKAiVtL~~g~~aid~~ 150 (156)
T 2zkr_s 96 LVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPD-G--EKKAYVRLAPDYDALDVA 150 (156)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSS-S--CEEEEEEECTTSCHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCC-C--ceEEEEEECCCCcHHHHH
Confidence 34445667888888877764 55 566665443321 1 134888887665544433
No 336
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=21.77 E-value=1.6e+02 Score=18.63 Aligned_cols=33 Identities=9% Similarity=0.111 Sum_probs=25.7
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCce
Q 029300 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKV 42 (195)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~i 42 (195)
|+.-.+.++||.+..+......|..++-.||..
T Consensus 5 pd~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~ 37 (104)
T 3pc6_A 5 PDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGE 37 (104)
T ss_dssp CCTTTTCEEEEESCCSTTHHHHHHHHHHHTTCE
T ss_pred chhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCE
Confidence 455668899999887656677888899888865
No 337
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=21.52 E-value=1.2e+02 Score=16.85 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=35.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEcc----HHHHHHHHHh
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDR 76 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~----~~~a~~a~~~ 76 (195)
.++.|.++.-..-...|...+.....|..+.+... .+.+.|.|.. .+....++..
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 63 (80)
T 1jww_A 5 AEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFA------LETVTVEYNPKEASVSDLKEAVDK 63 (80)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSS------SSEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 35778887665555678888888777766654332 2567888853 4455555654
No 338
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=21.33 E-value=84 Score=25.15 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=32.0
Q ss_pred EEeCCCCCC---CHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHH
Q 029300 19 LVLNITFRT---TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (195)
Q Consensus 19 ~V~nLp~~~---~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~ 75 (195)
+|||+..-. ....+.++..+||+|..+.+. +.-+|.+.+.+.++.++.
T Consensus 20 ~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~~---------~~~~v~v~~~~~i~~il~ 70 (476)
T 2fdv_A 20 FIGNYLQLNTEQMYNSLMKISERYGPVFTIHLG---------PRRVVVLCGHDAVREALV 70 (476)
T ss_dssp TTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHT
T ss_pred ccccHhhcCCcchHHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHh
Confidence 467765321 234566777889999887662 224566788888888874
No 339
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=20.83 E-value=1.9e+02 Score=20.34 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=26.2
Q ss_pred HHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEccHHHHHHHHHhh
Q 029300 29 ADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (195)
Q Consensus 29 ~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l 77 (195)
-++|..+|..|=.+. .| +.+.+..|.+.+.|.+.|+..
T Consensus 132 l~~i~~fF~~YK~le---------~g--K~v~v~gw~~~~~A~~~I~~~ 169 (173)
T 3d53_A 132 KKRIVHFFEHYKDLE---------KG--KWVKVTGWGDKVKAETLIKEG 169 (173)
T ss_dssp HHHHHHHHHHTTTTS---------TT--CCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc---------CC--CcEEEccCcCHHHHHHHHHHH
Confidence 467888999883321 12 246778899999999888753
No 340
>1vgg_A Conserved hypothetical protein TT1634; thermus thermophilus HB8, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.75A {Thermus thermophilus} SCOP: d.256.1.1
Probab=20.81 E-value=1.8e+02 Score=20.05 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=22.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhc
Q 029300 11 DIRDTYSLLVLNITFRTTADDLFPLFEK 38 (195)
Q Consensus 11 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~ 38 (195)
+.++++.|.|+.-++--|-+||.+.+-.
T Consensus 9 e~Pe~~NvI~GqsHFIKTVEDl~Ealv~ 36 (161)
T 1vgg_A 9 EKPENLNVILGQAHFIKTVEDLHEALVT 36 (161)
T ss_dssp CCCTTCEEEEEECCSTTHHHHHHHHHHH
T ss_pred cCCCCceEEEeeccccccHHHHHHHHhh
Confidence 3456778999999998899999887754
No 341
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=20.46 E-value=65 Score=18.30 Aligned_cols=10 Identities=10% Similarity=0.331 Sum_probs=7.7
Q ss_pred cEEEEEEccH
Q 029300 58 GFAFVRYKYA 67 (195)
Q Consensus 58 g~afV~f~~~ 67 (195)
..|+|.|++.
T Consensus 32 ~~clV~F~D~ 41 (58)
T 4hcz_A 32 EVCLVQFEDD 41 (58)
T ss_dssp TEEEEEETTS
T ss_pred CEEEEEEcCC
Confidence 4799999863
No 342
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=20.37 E-value=38 Score=21.60 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=8.8
Q ss_pred HHHHHHHhhcCC
Q 029300 29 ADDLFPLFEKYG 40 (195)
Q Consensus 29 ~~~l~~~f~~~G 40 (195)
-..|+++|++||
T Consensus 90 I~~ire~fqKYG 101 (101)
T 4aj5_1 90 IMKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHcC
Confidence 356889999997
No 343
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=20.34 E-value=2.2e+02 Score=19.67 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=39.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCceeEEEeccCCCCCCcccEEEEEEc----cHHHHHHHHHhh
Q 029300 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK----YADEAQKAVDRL 77 (195)
Q Consensus 16 ~~l~V~nLp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~g~~~g~afV~f~----~~~~a~~a~~~l 77 (195)
.+|.|.++.-..-...|...+.....|..+.+.... +.+.|.|. +.++...+|..+
T Consensus 124 ~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 183 (202)
T 2rop_A 124 TLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAE------GTATVLYNPAVISPEELRAAIEDM 183 (202)
T ss_dssp EEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 467788887666667789999988888877775432 56888885 345566666654
Done!