BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029301
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Omp Peptide (Yqf)
pdb|3GCO|A Chain A, Crystal Structure Of Degs H198p/d320a Mutant Modified By
Dfp In Complex With Dnrdgnvyqf Omp Peptide
pdb|3GDS|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Dnrdgnvyyf Peptide
pdb|3GDU|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDV|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
Length = 340
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 113 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGL 172
V++E++ PAA G+Q+ D ++ A + LE +A G+ +PVV+MR
Sbjct: 268 VVNEVSPDGPAANAGIQVNDLIISVDNKPA-ISALETMAQVAEIRPGSVIPVVVMRDDKQ 326
Query: 173 INLAVTPRPW 182
+ L VT + +
Sbjct: 327 LTLQVTIQEY 336
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 113 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGL 172
V++E++ PAA G+Q+ D ++ A + LE + G+ +PVV+MR
Sbjct: 247 VVNEVSPDGPAANAGIQVNDLIISVDNKPA-ISALETMDQVAEIRPGSVIPVVVMRDDKQ 305
Query: 173 INLAVTPRPW 182
+ L VT + +
Sbjct: 306 LTLQVTIQEY 315
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 113 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGL 172
V++E++ PAA G+Q+ D ++ A + LE + G+ +PVV+MR
Sbjct: 242 VVNEVSPDGPAANAGIQVNDLIISVDNKPA-ISALETMDQVAEIRPGSVIPVVVMRDDKQ 300
Query: 173 INLAVTPRPW 182
+ L VT + +
Sbjct: 301 LTLQVTIQEY 310
>pdb|3LWS|A Chain A, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|B Chain B, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|C Chain C, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|D Chain D, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|E Chain E, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|F Chain F, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
Length = 357
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 22 ADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDI 56
AD++ ++++ + G G G LVD +G+ T+I +
Sbjct: 299 ADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISV 333
>pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|B Chain B, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|C Chain C, Crystal Structure Of The Degs Stress Sensor
Length = 320
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 113 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGL 172
V++E++ PAA G+Q+ D ++ A + LE G+ +PVV+ R
Sbjct: 242 VVNEVSPDGPAANAGIQVNDLIISVDNKPA-ISALETXDQVAEIRPGSVIPVVVXRDDKQ 300
Query: 173 INLAVTPRPW 182
+ L VT + +
Sbjct: 301 LTLQVTIQEY 310
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 117 ITDASPAAEDGLQLGDQVLKFGTVE 141
+ + SPAA++GL+ GDQ+L+ V+
Sbjct: 38 VLEDSPAAKEGLEEGDQILRVNNVD 62
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 117 ITDASPAAEDGLQLGDQVLKFGTVE 141
+ + SPAA++GL+ GDQ+L+ V+
Sbjct: 30 VLEDSPAAKEGLEEGDQILRVNNVD 54
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 38 GLSGNLVDS-EGFPRTDIDIHLVRSERRRLAGDDGG 72
G+ +L+ + EGF R D+D + +RS+++ A GG
Sbjct: 154 GIGADLIATLEGFSREDVDAYALRSQQKAAAAWSGG 189
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
Length = 194
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 117 ITDASPAAEDGLQLGDQVLKFGTVE 141
+ + SPAA++GL+ GDQ+L+ V+
Sbjct: 31 VLEDSPAAKEGLEEGDQILRVNNVD 55
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 107 IRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVE 141
I++P I + S +AE GL++GDQ+++ V+
Sbjct: 38 IQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVD 72
>pdb|3ID3|A Chain A, Crystal Structure Of Rsep Pdz2 I304a Domain
pdb|3ID3|B Chain B, Crystal Structure Of Rsep Pdz2 I304a Domain
Length = 89
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 113 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLE--RLAAEGRKNQGNAVPVVIMRQG 170
V++ + S A++ GLQ GD+++K G L + R N G ++ + I RQG
Sbjct: 5 VLENVQPNSAASKAGLQAGDRIVKVD----GQPLTQWVTFVMLVRDNPGKSLALEIERQG 60
Query: 171 GLINLAVTP--RPWQGR--GLLGCHFRML 195
++L + P +P G+ G +G +++
Sbjct: 61 SPLSLTLIPESKPGNGKAIGFVGAEPKVI 89
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 117 ITDASPAAEDGLQLGDQVLKFGTVE 141
+ + SPAA++GL+ GDQ+L+ V+
Sbjct: 58 VLEDSPAAKEGLEEGDQILRVNNVD 82
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 107 IRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVE 141
I++P I + S +AE GL++GDQ+++ V+
Sbjct: 24 IQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVD 58
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 117 ITDASPAAEDGLQLGDQVLKFGTVE 141
+ + SPAA++GL+ GDQ+L+ V+
Sbjct: 33 VLEDSPAAKEGLEEGDQILRVNNVD 57
>pdb|3ID2|A Chain A, Crystal Structure Of Rsep Pdz2 Domain
pdb|3ID2|B Chain B, Crystal Structure Of Rsep Pdz2 Domain
Length = 90
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 113 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLE--RLAAEGRKNQGNAVPVVIMRQG 170
V++ + S A++ GLQ GD+++K G L + R N G ++ + I RQG
Sbjct: 6 VLENVQPNSAASKAGLQAGDRIVKVD----GQPLTQWVTFVMLVRDNPGKSLALEIERQG 61
Query: 171 GLINLAVTP--RPWQGR--GLLGCHFRML 195
++L + P +P G+ G +G +++
Sbjct: 62 SPLSLTLIPESKPGNGKAIGFVGIEPKVI 90
>pdb|4F06|A Chain A, Crystal Structure Of Solute Binding Protein Of Abc
Transporter From Rhodopseudomonas Palustris Haa2
Rpb_2270 In Complex With P- Hydroxybenzoic Acid
Length = 371
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 87 ASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQL 130
++++ AV +SP ++++ A +DE+T S AA DG +L
Sbjct: 251 STYHYAVSHDSPENKAFLALLQKGGAKLDEVTXTSVAAYDGARL 294
>pdb|3ID4|A Chain A, Crystal Structure Of Rsep Pdz2 Domain Fused Gkaspv Peptide
Length = 93
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 113 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLE--RLAAEGRKNQGNAVPVVIMRQG 170
V++ + S A++ GLQ GD+++K G L + R N G ++ + I RQG
Sbjct: 5 VLENVQPNSAASKAGLQAGDRIVKVD----GQPLTQWVTFVMLVRDNPGKSLALEIERQG 60
Query: 171 GLINLAVTPRPWQGRG 186
++L + P G G
Sbjct: 61 SPLSLTLIPESKPGNG 76
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 137 FGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLI 173
FG V G N+++++ + G K+ PV+I R G LI
Sbjct: 136 FGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGELI 172
>pdb|1Y9U|A Chain A, Bordetella Ferric Binding Protein
pdb|2OWS|A Chain A, Crystal Structure Of Bordetella Pertussis Holo Ferric
Binding Protein Bound With Two Synergistic Oxalate
Anions
pdb|2OWT|A Chain A, Crystal Structure Of Bordetella Pertussis Holo Ferric
Binding Protein With Bound Synergistic Carbonate Anion
Length = 323
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 132 DQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINL 175
D +K TV D LLER+ AEG K+ + + V + G LI+L
Sbjct: 29 DSGIKVNTVFVKDGLLERVRAEGDKSPADVLMTVDI--GNLIDL 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,783,351
Number of Sequences: 62578
Number of extensions: 239859
Number of successful extensions: 595
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 569
Number of HSP's gapped (non-prelim): 38
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)