BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029301
(195 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9WTV5|PSMD9_RAT 26S proteasome non-ATPase regulatory subunit 9 OS=Rattus norvegicus
GN=Psmd9 PE=1 SV=1
Length = 222
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 26/204 (12%)
Query: 8 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRR-- 65
++I LM ++ +EA + A D L G G++ LVD EG+PR D+D++ VR+ R
Sbjct: 21 SDIQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCEGYPRADVDLYQVRTARHNII 80
Query: 66 -LAGDDGGSNNQNPSILGTVQS---------------ASFNNAVPRNSPAAMDVDVIIRR 109
L D Q L + + + N + +SPA + +
Sbjct: 81 CLQNDHKALMKQVEEALHQLHARDKEKQARDMAEAREEAMNRRLASDSPA-------LPK 133
Query: 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGD-NLLERLAAEGRKNQGNAVPVVIMR 168
FA ++ I+ SPA+ GLQ+ D++++FG+V + L+ + + ++G + V+++R
Sbjct: 134 AFARVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQNVGTVVQHSEGKPLNVMVIR 193
Query: 169 QGGLINLAVTPRPWQGRGLLGCHF 192
+G L +TP W G+GLLGC+
Sbjct: 194 RGEKHQLRLTPTRWAGKGLLGCNI 217
>sp|O00233|PSMD9_HUMAN 26S proteasome non-ATPase regulatory subunit 9 OS=Homo sapiens
GN=PSMD9 PE=1 SV=3
Length = 223
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 102/202 (50%), Gaps = 21/202 (10%)
Query: 8 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLA 67
+++ LM ++ +EA + A D L G G++ LVD EG+PR+D+D++ VR+ R +
Sbjct: 21 SDVQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCEGYPRSDVDLYQVRTARHNII 80
Query: 68 GDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDV-----DVIIR-----------RPF 111
N + +++ V+ A A D+ + + R R F
Sbjct: 81 ----CLQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAHKEAMSRKLGQSESQGPPRAF 136
Query: 112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGD-NLLERLAAEGRKNQGNAVPVVIMRQG 170
A ++ I+ SPA+ GLQ+ D++++FG+V + L + + + ++G + V ++R+G
Sbjct: 137 AKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLHNIGSVVQHSEGKPLNVTVIRRG 196
Query: 171 GLINLAVTPRPWQGRGLLGCHF 192
L + P W G+GLLGC+
Sbjct: 197 EKHQLRLVPTRWAGKGLLGCNI 218
>sp|Q3SZ19|PSMD9_BOVIN 26S proteasome non-ATPase regulatory subunit 9 OS=Bos taurus
GN=PSMD9 PE=1 SV=1
Length = 221
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 100/200 (50%), Gaps = 19/200 (9%)
Query: 8 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLA 67
+++ L+ ++ +EA + A + L G G++ LVD EG+PR D+D++ VR+ R +
Sbjct: 21 SDVQELIRRKEEIEAQIKANYEVLESQKGIGMNEPLVDCEGYPRADVDLYQVRTARHNIV 80
Query: 68 GDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIR--------------RPFAV 113
N + +++ V+ A A D+ R + FA
Sbjct: 81 ----CLQNDHKAVMKQVEDALHQLHARDKEKQARDLAEAHREALSRDQSQGLSPAQAFAK 136
Query: 114 IDEITDASPAAEDGLQLGDQVLKFGTVEAGD-NLLERLAAEGRKNQGNAVPVVIMRQGGL 172
++ I+ SPA+ GLQ+ D++L+FG+V + L+ + + + ++G + V +MR+G
Sbjct: 137 VNSISPGSPASIAGLQVDDEILEFGSVNTQNFQSLQNIGSVVQHSEGKPLNVTVMRRGEK 196
Query: 173 INLAVTPRPWQGRGLLGCHF 192
L + P W G+GLLGC+
Sbjct: 197 HQLRLVPTRWAGKGLLGCNI 216
>sp|Q9CR00|PSMD9_MOUSE 26S proteasome non-ATPase regulatory subunit 9 OS=Mus musculus
GN=Psmd9 PE=1 SV=1
Length = 222
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 26/204 (12%)
Query: 8 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRR-- 65
++I LM ++ +EA++ A D L G G++ LVD EG+PR D+D++ VR+ R
Sbjct: 21 SDIQDLMRRKEEIEAEIKANYDVLESQKGIGMNEPLVDCEGYPRADVDLYQVRTARHNII 80
Query: 66 -LAGDDGGSNNQNPSILGTVQS---------------ASFNNAVPRNSPAAMDVDVIIRR 109
L D Q L + + + N + NSP ++ +
Sbjct: 81 CLQNDHKALMKQVEEALHQLHARDKEKQARDMAEAREEAMNRRLASNSP-------VLPQ 133
Query: 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGD-NLLERLAAEGRKNQGNAVPVVIMR 168
FA ++ I+ SPA+ GLQ+ D++++FG+V + ++ + + ++G + V ++R
Sbjct: 134 AFARVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSVQNVGTVVQHSEGKPLNVTVIR 193
Query: 169 QGGLINLAVTPRPWQGRGLLGCHF 192
+G L + P W G+GLLGC+
Sbjct: 194 RGEKHQLRLIPTRWAGKGLLGCNI 217
>sp|P40555|PSMD9_YEAST Probable 26S proteasome regulatory subunit p27 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NAS2 PE=1
SV=1
Length = 220
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 98/194 (50%), Gaps = 10/194 (5%)
Query: 9 EIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRR--L 66
++ LM ++ +E + A L Q G G+ LV +G+PR+D+D+ V R+ +
Sbjct: 30 KLSELMVLKTDIETQLEAYFSVLEQQ-GIGMDSALVTPDGYPRSDVDVLQVTMIRKNVNM 88
Query: 67 AGDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVD---VIIRRPFAVIDEITDASPA 123
+D Q +L + N V N A + D + PFA I E+ SP+
Sbjct: 89 LKNDLNHLLQRSHVLLNQHFDNMN--VKSNQDARRNNDDQAIQYTIPFAFISEVVPGSPS 146
Query: 124 AEDGLQLGDQVLKFGTVEAGDN-LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP-RP 181
+ +++ D+++ G V A ++ L+ + KN+ +PV+++R+G ++ ++TP R
Sbjct: 147 DKADIKVDDKLISIGNVHAANHSKLQNIQMVVMKNEDRPLPVLLLREGQILKTSLTPSRN 206
Query: 182 WQGRGLLGCHFRML 195
W GRGLLGC + L
Sbjct: 207 WNGRGLLGCRIQEL 220
>sp|Q552Y8|PSMD9_DICDI Probable 26S proteasome non-ATPase regulatory subunit 9
OS=Dictyostelium discoideum GN=psmD9 PE=2 SV=1
Length = 262
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 52/233 (22%)
Query: 10 IMSLMEKRSALEADMNAIIDRLSQSNGP--GLSGNLVDSEGFPRTDIDIHL-VRSERRRL 66
I +LM R LE ++ ++++ L +G GL G+ DSEG+P +++ + V+ R R+
Sbjct: 25 IKTLMVTRGDLEKELESLMNFLKSGDGKTFGLKGSFTDSEGYPSPHLELIIEVKKARSRI 84
Query: 67 AG--------------------DDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVD-- 104
A + NQ+ S + S +N N+ M +D
Sbjct: 85 AHIQNDYKQVMKDIEFHLEKLHKSPTNKNQSSSTFSINNTTSTSNNNNNNNEDEMKIDKP 144
Query: 105 -------------VIIRR---PFAVIDEITDASPAAEDGLQLGDQVLKFGTV-------E 141
V + + PF ID +++ SP+ + L+ GD + +FGTV +
Sbjct: 145 LTVETETKPKPIEVEVEKVGIPFVYIDLVSEGSPSDKANLKKGDLIFQFGTVGPFFEERQ 204
Query: 142 AGDNL----LERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGC 190
GDNL L+ +A R ++ A+ + + R +I+ ++ PR W G+GL+GC
Sbjct: 205 VGDNLNSNHLQSIATIVRNSENKAIQIKLSRGTSIISTSLIPRKWSGQGLIGC 257
>sp|O94393|PSMD9_SCHPO Probable 26S proteasome regulatory subunit p27
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=nas2 PE=3 SV=1
Length = 213
Score = 70.5 bits (171), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 98/218 (44%), Gaps = 43/218 (19%)
Query: 14 MEKRSALEADMNAIIDRLSQSNGPGLSGN------LVDSEGFPRTDIDIHLVRSERRR-- 65
M++ L+ I +RL++ G L L+ +GFPR+DID+ +R+ R
Sbjct: 1 MDEFKQLDLKKREIENRLNELEGVLLKERVTMDTPLLTEDGFPRSDIDVPSIRTARHEII 60
Query: 66 -LAGDDGGSNNQNPSILGTV------QSASFNN-------AVPRNSPAA---MDVDVIIR 108
L D +Q +L V +S + N+ A P N AA M+ D+I R
Sbjct: 61 TLRNDHRELEDQIKKVLEKVFSGFSKESLAANDETKLAQEADPLNFNAANYNMN-DIISR 119
Query: 109 -------RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNA 161
+PF V+D + SPA E GL +GD+++ V + L L N
Sbjct: 120 SKILGRVKPFCVVDSVAVESPAQEAGLCIGDELVHVQNVTS----LSELPTFISNNVNKT 175
Query: 162 VPVVIMR------QGGLINLAVTPRPWQGRGLLGCHFR 193
+ V+++R L+ L +TP WQG GLLGCH R
Sbjct: 176 LDVLLIRGYSADGSTNLVELKLTPHKWQGPGLLGCHLR 213
>sp|Q10920|PSMD9_CAEEL Probable 26S proteasome non-ATPase regulatory subunit 9
OS=Caenorhabditis elegans GN=C44B7.1 PE=1 SV=2
Length = 197
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 91/192 (47%), Gaps = 24/192 (12%)
Query: 13 LMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAG--DD 70
L+++R L+ + ++ L ++N + L+D+EG+P ID++ VR R L +D
Sbjct: 10 LLQQRDELDGKIKELMLVL-ETNNSTMDSPLLDAEGYPLNTIDVYAVRHARHDLICLRND 68
Query: 71 GGS---------NNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDAS 121
+ N+N + G + S V R S PF I + + S
Sbjct: 69 RAALTEKIVVEMENENKEVSGQT-ATSEEKPVHRTS----------NEPFVKISSVVELS 117
Query: 122 PAAEDGLQLGDQVLKFGTVEAGD-NLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR 180
PA G + D ++++G + G+ N ++ +A ++++ + V ++R+ + L + P+
Sbjct: 118 PADIGGFRKDDLIIQYGNLHHGNFNDMQEVAQITKQSEDKIIRVTVIRENRPVRLEICPK 177
Query: 181 PWQGRGLLGCHF 192
W G GLLGC+
Sbjct: 178 KWSGPGLLGCNI 189
>sp|E1V4H2|DEGPL_HALED Probable periplasmic serine endoprotease DegP-like OS=Halomonas
elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 /
NCIMB 2198 / 1H9) GN=mucD PE=3 SV=1
Length = 474
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 112 AVIDEITDASPAAEDGLQLGDQVLKF-GTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG 170
A+I ++ PAA DGL+ GD VL+ G + L RL GR + GN V + ++R G
Sbjct: 297 ALIADLDPDGPAARDGLKAGDVVLEVDGQTVDSSSALPRLI--GRVSPGNDVELKVLRNG 354
Query: 171 GLINLAVTPRPW 182
N+ VT W
Sbjct: 355 EHRNVTVTVGDW 366
>sp|Q09838|PRZ1_SCHPO Transcriptional regulator prz1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prz1 PE=1 SV=1
Length = 681
Score = 35.4 bits (80), Expect = 0.27, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 21 EADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDI-DIHLVRSERRRLAGDDGGSNNQNPS 79
EAD +D +SQ+ SG VDSE FP D D L+ ++ + G ++ P
Sbjct: 231 EADAFNFVDVMSQA-----SGTEVDSERFPSVDFEDPSLLMENQQNITGTGSFADYLQPP 285
Query: 80 ILGTVQSASFNNAVPRNSPAAMDVD 104
G++ +F NA P S +D D
Sbjct: 286 SSGSL--GAFTNASPGESNTGIDFD 308
>sp|O83609|Y600_TREPA Putative zinc metalloprotease TP_0600 OS=Treponema pallidum (strain
Nichols) GN=TP_0600 PE=3 SV=1
Length = 450
Score = 33.9 bits (76), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 169
P V D +D SPA GLQ GD +L+ G + + ++ A+P VI R+
Sbjct: 137 PVYVYDS-SDNSPARRVGLQDGDTILRIG--DQPIRYFSDIQKIVSQHAQRALPFVIERR 193
Query: 170 GGLINLAVTP 179
G L+++ +TP
Sbjct: 194 GQLMHVTITP 203
>sp|O67776|Y1964_AQUAE Putative zinc metalloprotease aq_1964 OS=Aquifex aeolicus (strain
VF5) GN=aq_1964 PE=3 SV=1
Length = 429
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 113 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGL 172
V+ + SPA + G++ GD +L+ + N L E RK+QG A+ + I+R G +
Sbjct: 210 VVGGVKKGSPADQVGIKPGDLILEVNGKKI--NTWYELVEEVRKSQGKAIKLKILRNGKM 267
Query: 173 INLAVTP 179
I + P
Sbjct: 268 IEKELIP 274
>sp|P44947|DEGS_HAEIN Serine endoprotease DegS OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=degS PE=3 SV=1
Length = 340
Score = 33.5 bits (75), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 113 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGL 172
VI +++ SPAA+ G+Q+GD +LK E G + E + + V V I+R G +
Sbjct: 269 VITDVSPNSPAAKSGIQVGDVILKLNNQE-GISAREMMQIIANTKPNSKVLVTILRLGKI 327
Query: 173 INLAVTPRPW 182
+ + V +
Sbjct: 328 LQIPVVIEEF 337
>sp|Q9KYS0|Y5695_STRCO Putative zinc metalloprotease SCO5695 OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=SCO5695 PE=3
SV=1
Length = 430
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 127 GLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVT 178
GL+ GD++L F V D ++L+ R N G VPVV+ R+G I L T
Sbjct: 186 GLRAGDKILAFDGVRTDD--WDKLSDLIRANPGEDVPVVVERKGEEITLHAT 235
>sp|P0AEE3|DEGS_ECOLI Serine endoprotease DegS OS=Escherichia coli (strain K12) GN=degS
PE=1 SV=1
Length = 355
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 113 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGL 172
V++E++ PAA G+Q+ D ++ A + LE + G+ +PVV+MR
Sbjct: 283 VVNEVSPDGPAANAGIQVNDLIISVDNKPA-ISALETMDQVAEIRPGSVIPVVVMRDDKQ 341
Query: 173 INLAVTPRPW 182
+ L VT + +
Sbjct: 342 LTLQVTIQEY 351
>sp|P0AEE4|DEGS_ECO57 Serine endoprotease DegS OS=Escherichia coli O157:H7 GN=degS PE=3
SV=1
Length = 355
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 113 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGL 172
V++E++ PAA G+Q+ D ++ A + LE + G+ +PVV+MR
Sbjct: 283 VVNEVSPDGPAANAGIQVNDLIISVDNKPA-ISALETMDQVAEIRPGSVIPVVVMRDDKQ 341
Query: 173 INLAVTPRPW 182
+ L VT + +
Sbjct: 342 LTLQVTIQEY 351
>sp|Q8VQ25|Y627_BARHE Putative zinc metalloprotease BH06270 OS=Bartonella henselae
(strain ATCC 49882 / Houston 1) GN=BH06270 PE=3 SV=2
Length = 358
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 113 VIDEITDASPAAEDGLQLGDQVLKF--GTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG 170
V+ SPA + GLQLGD+ ++ VE+ ++L+ + G G+ + + R G
Sbjct: 121 VVGSFVKDSPAVQAGLQLGDRFIEMDGQQVESFEDLMNYVTFHG----GDPIEFKMERSG 176
Query: 171 GLINLAVTPR 180
+ +TP+
Sbjct: 177 QVFTTVITPK 186
>sp|Q7SXL3|TBP_DANRE TATA-box-binding protein OS=Danio rerio GN=tbp PE=1 SV=1
Length = 302
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 16/103 (15%)
Query: 72 GSNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDG---L 128
G + Q P + + Q+ S A+P N+P + P + IT A+PA+E
Sbjct: 74 GGSGQTPQLYHSTQAVSTTTALPGNTP-------LYTTPLTPMTPITPATPASESSGIVP 126
Query: 129 QLGDQVLKFGTVEAGDNL-LERLAAEGRKNQGNA--VPVVIMR 168
QL + V TV G L L+ +A R + N VIMR
Sbjct: 127 QLQNIV---STVNLGCKLDLKTIALRARNAEYNPKRFAAVIMR 166
>sp|P74060|Y821_SYNY3 Putative sulfur carrier protein slr0821 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=slr0821 PE=3 SV=1
Length = 109
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 22 ADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAGDD 70
A++ +I+ L ++N PG+ L D EG PR ++ ++ + R L G D
Sbjct: 44 ANVGQLIEAL-EANCPGIKARLCDEEGKPRRFLNFYVNEEDIRFLEGTD 91
>sp|Q8ZRP1|RSEP_SALTY Regulator of sigma E protease OS=Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720) GN=rseP PE=3 SV=1
Length = 450
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 113 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLE--RLAAEGRKNQGNAVPVVIMRQG 170
V+ E+ S A++ GLQ GD+++K G L + + R N G + + I RQG
Sbjct: 225 VLSEVQANSAASKAGLQAGDRIVKVD----GQPLTQWMKFVTFVRDNPGKPLALEIERQG 280
Query: 171 GLINLAVTP 179
++L +TP
Sbjct: 281 SALSLTLTP 289
>sp|Q9CBU4|Y1582_MYCLE Putative zinc metalloprotease ML1582 OS=Mycobacterium leprae
(strain TN) GN=ML1582 PE=3 SV=1
Length = 404
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 118 TDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINL 175
T PAA GL+ GD V+K G TV D+ +AA RK G VP+V R G I
Sbjct: 154 TGPGPAALAGLRAGDVVVKIGDTTVSTFDD----MAAVVRKLHGT-VPIVFERDGTAITS 208
Query: 176 AVTPRPWQ 183
V P Q
Sbjct: 209 YVDITPTQ 216
>sp|Q8Z9A4|RSEP_SALTI Regulator of sigma E protease OS=Salmonella typhi GN=rseP PE=3 SV=1
Length = 450
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 113 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLE--RLAAEGRKNQGNAVPVVIMRQG 170
V+ E+ S A++ GLQ GD+++K G L + + R N G + + I RQG
Sbjct: 225 VLSEVQANSAASKAGLQAGDRIVKVD----GQPLTQWMKFVTFVRDNPGKPLALEIERQG 280
Query: 171 GLINLAVTP 179
++L +TP
Sbjct: 281 SALSLTLTP 289
>sp|Q9WZZ2|Y890_THEMA Putative zinc metalloprotease TM_0890 OS=Thermotoga maritima
(strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
GN=TM_0890 PE=3 SV=1
Length = 501
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 114 IDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLI 173
IDE+ SPA E GL+ GD + A D + +G V +VI+R G
Sbjct: 125 IDEVVPGSPAEEAGLRRGDIIYSINDKIAFDTSI----ISNEIQKGLPVELVIIRNGEKK 180
Query: 174 NLAVTPRPW 182
+L +TPR +
Sbjct: 181 SLRLTPRMY 189
>sp|P63332|Y1262_STAAM Putative zinc metalloprotease SAV1262 OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=SAV1262 PE=3 SV=1
Length = 428
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 169
P + ++++ D PA + GLQ GD++++ G + + + + K + N V R
Sbjct: 200 PTSTVEQVADKYPAQQAGLQKGDKIVQIGKYKISE--FDDVDKALDKVKDNKTTVKFERD 257
Query: 170 GGLINLAVTPR 180
G ++ +TP+
Sbjct: 258 GKTKSVELTPK 268
>sp|P63333|Y1105_STAAN Putative zinc metalloprotease SA1105 OS=Staphylococcus aureus
(strain N315) GN=SA1105 PE=1 SV=1
Length = 428
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 169
P + ++++ D PA + GLQ GD++++ G + + + + K + N V R
Sbjct: 200 PTSTVEQVADKYPAQQAGLQKGDKIVQIGKYKISE--FDDVDKALDKVKDNKTTVKFERD 257
Query: 170 GGLINLAVTPR 180
G ++ +TP+
Sbjct: 258 GKTKSVELTPK 268
>sp|Q6G9V1|Y1196_STAAS Putative zinc metalloprotease SAS1196 OS=Staphylococcus aureus
(strain MSSA476) GN=SAS1196 PE=3 SV=1
Length = 428
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 169
P + ++++ D PA + GLQ GD++++ G + + + + K + N V R
Sbjct: 200 PTSTVEQVADKYPAQQAGLQKGDKIVQIGKYKISE--FDDVDKALDKVKDNKTTVKFERD 257
Query: 170 GGLINLAVTPR 180
G ++ +TP+
Sbjct: 258 GKTKSVELTPK 268
>sp|Q8NWZ4|Y1145_STAAW Putative zinc metalloprotease MW1145 OS=Staphylococcus aureus
(strain MW2) GN=MW1145 PE=3 SV=1
Length = 428
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 169
P + ++++ D PA + GLQ GD++++ G + + + + K + N V R
Sbjct: 200 PTSTVEQVADKYPAQQAGLQKGDKIVQIGKYKISE--FDDVDKALDKVKDNKTTVKFERD 257
Query: 170 GGLINLAVTPR 180
G ++ +TP+
Sbjct: 258 GKTKSVELTPK 268
>sp|C8VBH3|CEF1_EMENI Pre-mRNA-splicing factor cef1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cef1
PE=3 SV=1
Length = 791
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 85 QSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGT----V 140
Q+ + ++PR P +D+D ++ R V+D IT A E L + + KF T +
Sbjct: 546 QTQVYQRSLPR--PVVLDIDALMERASRVMDPITGLI-AKEAALLVANDACKFATPGAKI 602
Query: 141 EAGDNLLERL 150
E LERL
Sbjct: 603 EGKPRKLERL 612
>sp|Q5HGG9|Y1281_STAAC Putative zinc metalloprotease SACOL1281 OS=Staphylococcus aureus
(strain COL) GN=SACOL1281 PE=3 SV=1
Length = 428
Score = 31.2 bits (69), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 169
P + ++++ D PA + GLQ GD++++ G + + + + K + N V R
Sbjct: 200 PTSTVEQVADKYPAQQAGLQKGDKIVQIGKYKISE--FDDVDKALDKVKDNKTTVKFERD 257
Query: 170 GGLINLAVTPRPWQGR 185
G ++ +TP+ + +
Sbjct: 258 GKTKSVELTPKKTEKK 273
>sp|Q8EKR9|FADB_SHEON Fatty acid oxidation complex subunit alpha OS=Shewanella oneidensis
(strain MR-1) GN=fadB PE=3 SV=1
Length = 716
Score = 30.4 bits (67), Expect = 8.1, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 30 RLSQSNGPGLSGNLVDSEGFPRTDID------IHLVRSERRRLAGDDGGSNNQNPSILGT 83
RL Q NG G VDS G P+ D+D + E++ D+ + P I+ T
Sbjct: 580 RLGQKNGKGFYAYSVDSRGKPKKDVDPTSYELLKAAFGEQKAFDADEIIARTMIPMIIET 639
Query: 84 VQ 85
V+
Sbjct: 640 VR 641
>sp|P44936|Y918_HAEIN Putative zinc metalloprotease HI_0918 OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0918
PE=3 SV=1
Length = 443
Score = 30.4 bits (67), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 113 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN--QGNAVPVVIMRQG 170
V+ ++ SPA + GLQ+GD++LK +NL + K QG + + + R G
Sbjct: 224 VLSKVVQNSPAEKAGLQIGDKILK-------ENLTALPWQDFIKQVEQGESFSIKVERNG 276
Query: 171 GLINLAVTP-RPWQGRGLLGC 190
+ +TP R G+ +G
Sbjct: 277 ETFDKVLTPVRNQNGKWFVGV 297
>sp|Q0I0T3|FADB_SHESR Fatty acid oxidation complex subunit alpha OS=Shewanella sp.
(strain MR-7) GN=fadB PE=3 SV=1
Length = 716
Score = 30.4 bits (67), Expect = 8.3, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 30 RLSQSNGPGLSGNLVDSEGFPRTDID------IHLVRSERRRLAGDDGGSNNQNPSILGT 83
RL Q NG G VDS G P+ D+D + E++ D+ + P I+ T
Sbjct: 580 RLGQKNGKGFYAYSVDSRGKPKKDVDPTSYELLKAAFGEQKAFDADEIIARTMIPMIIET 639
Query: 84 VQ 85
V+
Sbjct: 640 VR 641
>sp|Q0HPB7|FADB_SHESM Fatty acid oxidation complex subunit alpha OS=Shewanella sp.
(strain MR-4) GN=fadB PE=3 SV=1
Length = 716
Score = 30.4 bits (67), Expect = 8.3, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 30 RLSQSNGPGLSGNLVDSEGFPRTDID------IHLVRSERRRLAGDDGGSNNQNPSILGT 83
RL Q NG G VDS G P+ D+D + E++ D+ + P I+ T
Sbjct: 580 RLGQKNGKGFYAYSVDSRGKPKKDVDPTSYELLKAAFGEQKAFDADEIIARTMIPMIIET 639
Query: 84 VQ 85
V+
Sbjct: 640 VR 641
>sp|A0KR50|FADB_SHESA Fatty acid oxidation complex subunit alpha OS=Shewanella sp.
(strain ANA-3) GN=fadB PE=3 SV=1
Length = 716
Score = 30.4 bits (67), Expect = 8.4, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 30 RLSQSNGPGLSGNLVDSEGFPRTDID------IHLVRSERRRLAGDDGGSNNQNPSILGT 83
RL Q NG G VDS G P+ D+D + E++ D+ + P I+ T
Sbjct: 580 RLGQKNGKGFYAYSVDSRGKPKKDVDPTSYELLKAAFGEQKAFDADEIIARTMIPMIIET 639
Query: 84 VQ 85
V+
Sbjct: 640 VR 641
>sp|Q54QG9|UBA3_DICDI NEDD8-activating enzyme E1 catalytic subunit OS=Dictyostelium
discoideum GN=uba3 PE=1 SV=1
Length = 442
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 101 MDVDVIIRR--PFAV--IDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK 156
+D++ II+R PFA + T ASP +GLQ +VL G G +L+ LA G +
Sbjct: 15 IDIEKIIKRTGPFASPSFEPDTKASPNIMNGLQNDFKVLVIGAGGLGCEILKNLALSGFR 74
Query: 157 N 157
N
Sbjct: 75 N 75
>sp|Q6GHH3|Y1238_STAAR Putative zinc metalloprotease SAR1238 OS=Staphylococcus aureus
(strain MRSA252) GN=SAR1238 PE=3 SV=1
Length = 428
Score = 30.0 bits (66), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 169
P + ++++ D PA + G+Q GD++++ G + + + + K + N V R
Sbjct: 200 PTSTVEQVADKYPAQQAGIQKGDKIVQIGKYKISE--FDDVDKALDKVKDNKTTVKFERD 257
Query: 170 GGLINLAVTPR 180
G ++ +TP+
Sbjct: 258 GKTKSVELTPK 268
>sp|Q65M61|SSUD_BACLD Alkanesulfonate monooxygenase OS=Bacillus licheniformis (strain DSM
13 / ATCC 14580) GN=ssuD PE=3 SV=1
Length = 376
Score = 30.0 bits (66), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 139 TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLL 188
T+ A N ++R+ + G+K +V + QG NL ++P W G GL+
Sbjct: 252 TIAAAQNAMKRMDSSGQKR------MVQLHQGNRSNLEISPNLWAGIGLV 295
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,528,561
Number of Sequences: 539616
Number of extensions: 3190723
Number of successful extensions: 7981
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 7934
Number of HSP's gapped (non-prelim): 63
length of query: 195
length of database: 191,569,459
effective HSP length: 111
effective length of query: 84
effective length of database: 131,672,083
effective search space: 11060454972
effective search space used: 11060454972
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)