Query 029301
Match_columns 195
No_of_seqs 380 out of 2143
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 10:42:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3129 26S proteasome regulat 100.0 5.5E-46 1.2E-50 291.2 17.2 194 1-195 14-226 (231)
2 COG3480 SdrC Predicted secrete 99.6 2.7E-16 5.8E-21 131.2 6.0 159 32-193 31-214 (342)
3 PF13180 PDZ_2: PDZ domain; PD 99.6 5.1E-14 1.1E-18 97.1 11.0 67 110-178 14-81 (82)
4 PF04495 GRASP55_65: GRASP55/6 99.5 4.3E-13 9.2E-18 101.5 9.0 84 108-193 41-128 (138)
5 cd00991 PDZ_archaeal_metallopr 99.4 2.3E-12 4.9E-17 88.3 10.7 67 110-178 10-77 (79)
6 cd00986 PDZ_LON_protease PDZ d 99.4 3.9E-12 8.4E-17 86.9 11.0 74 106-182 4-78 (79)
7 cd00989 PDZ_metalloprotease PD 99.4 5.7E-12 1.2E-16 85.6 10.7 67 111-179 13-79 (79)
8 cd00988 PDZ_CTP_protease PDZ d 99.3 1.3E-11 2.7E-16 85.2 9.3 70 109-180 12-84 (85)
9 cd00990 PDZ_glycyl_aminopeptid 99.2 7.7E-11 1.7E-15 80.3 9.6 67 110-180 12-78 (80)
10 TIGR00054 RIP metalloprotease 99.2 8E-11 1.7E-15 104.2 12.0 78 111-191 204-281 (420)
11 cd00987 PDZ_serine_protease PD 99.2 9.1E-11 2E-15 81.4 9.8 65 110-176 24-89 (90)
12 PRK10779 zinc metallopeptidase 99.2 2.4E-10 5.3E-15 102.0 11.8 80 111-192 222-305 (449)
13 TIGR02860 spore_IV_B stage IV 99.2 5.6E-10 1.2E-14 97.5 12.9 86 106-193 101-196 (402)
14 TIGR02037 degP_htrA_DO peripla 99.1 4.6E-10 1E-14 99.5 11.8 83 110-194 257-346 (428)
15 cd00136 PDZ PDZ domain, also c 99.1 4.1E-10 8.9E-15 74.7 7.5 55 110-166 13-69 (70)
16 PRK10779 zinc metallopeptidase 99.1 4.4E-10 9.5E-15 100.3 8.9 103 56-179 87-194 (449)
17 PRK10139 serine endoprotease; 99.1 1.1E-09 2.4E-14 97.9 11.0 69 110-180 290-359 (455)
18 PRK10898 serine endoprotease; 99.1 1.4E-09 3.1E-14 94.3 11.4 71 110-182 279-350 (353)
19 TIGR02038 protease_degS peripl 99.1 1.2E-09 2.6E-14 94.6 10.7 70 110-181 278-348 (351)
20 TIGR01713 typeII_sec_gspC gene 99.0 1.7E-09 3.8E-14 90.0 10.3 67 110-178 191-258 (259)
21 PRK10942 serine endoprotease; 99.0 4E-09 8.6E-14 94.8 10.9 69 110-180 311-380 (473)
22 PRK10139 serine endoprotease; 98.9 6.9E-09 1.5E-13 92.8 10.4 65 110-177 390-454 (455)
23 TIGR03279 cyano_FeS_chp putati 98.9 4.8E-09 1E-13 92.3 9.1 72 114-193 2-74 (433)
24 TIGR02037 degP_htrA_DO peripla 98.9 1.1E-08 2.5E-13 90.7 10.0 65 110-176 362-427 (428)
25 PLN00049 carboxyl-terminal pro 98.9 1.5E-08 3.2E-13 89.1 10.4 67 111-179 103-171 (389)
26 TIGR00225 prc C-terminal pepti 98.9 7.6E-09 1.6E-13 89.0 8.3 67 110-178 62-130 (334)
27 cd00992 PDZ_signaling PDZ doma 98.9 1.6E-08 3.4E-13 68.9 7.9 54 110-166 26-81 (82)
28 PF00595 PDZ: PDZ domain (Also 98.8 2.2E-08 4.8E-13 68.4 8.1 55 110-167 25-81 (81)
29 PRK10942 serine endoprotease; 98.8 2.5E-08 5.3E-13 89.7 10.3 65 110-177 408-472 (473)
30 smart00228 PDZ Domain present 98.8 2.8E-08 6E-13 67.7 7.7 58 110-170 26-85 (85)
31 TIGR00054 RIP metalloprotease 98.7 6.4E-08 1.4E-12 85.8 7.3 101 56-176 87-191 (420)
32 COG0793 Prc Periplasmic protea 98.6 3.2E-07 6.9E-12 81.0 9.4 68 110-177 112-181 (406)
33 COG0265 DegQ Trypsin-like seri 98.5 9.3E-07 2E-11 76.4 10.9 72 108-181 268-340 (347)
34 PRK11186 carboxy-terminal prot 98.4 1.9E-06 4.1E-11 80.2 9.3 69 110-178 255-332 (667)
35 KOG3834 Golgi reassembly stack 98.2 2.1E-06 4.5E-11 74.9 6.2 78 113-193 112-194 (462)
36 PRK09681 putative type II secr 98.2 6.6E-06 1.4E-10 68.9 8.8 62 116-179 210-275 (276)
37 PF14685 Tricorn_PDZ: Tricorn 98.1 1.8E-05 3.8E-10 55.4 8.1 65 110-176 12-87 (88)
38 KOG3553 Tax interaction protei 98.1 3E-06 6.5E-11 60.0 4.1 51 106-156 55-105 (124)
39 KOG1421 Predicted signaling-as 98.1 2.6E-05 5.6E-10 71.7 10.1 66 112-180 305-370 (955)
40 COG3975 Predicted protease wit 97.7 6.9E-05 1.5E-09 67.2 6.0 62 110-180 462-523 (558)
41 KOG3834 Golgi reassembly stack 97.6 0.00018 3.9E-09 63.0 7.3 80 110-193 15-99 (462)
42 KOG1320 Serine protease [Postt 97.5 0.0004 8.7E-09 62.1 8.2 68 111-180 399-467 (473)
43 COG3031 PulC Type II secretory 97.5 0.00034 7.4E-09 57.1 6.7 58 118-177 215-273 (275)
44 COG0750 Predicted membrane-ass 97.2 0.0025 5.5E-08 55.3 9.2 68 111-180 130-209 (375)
45 KOG3580 Tight junction protein 97.1 0.00059 1.3E-08 62.2 4.2 56 110-167 429-487 (1027)
46 KOG3209 WW domain-containing p 96.9 0.0017 3.7E-08 60.2 5.7 60 108-168 776-836 (984)
47 PF12812 PDZ_1: PDZ-like domai 96.7 0.0071 1.5E-07 41.3 6.1 45 112-158 32-76 (78)
48 KOG3532 Predicted protein kina 96.6 0.0054 1.2E-07 56.9 6.8 54 112-168 400-453 (1051)
49 KOG3542 cAMP-regulated guanine 96.1 0.0063 1.4E-07 56.5 4.1 56 110-169 562-619 (1283)
50 KOG3550 Receptor targeting pro 96.1 0.022 4.8E-07 43.6 6.3 55 112-167 117-172 (207)
51 KOG3580 Tight junction protein 96.0 0.01 2.2E-07 54.4 5.1 68 112-180 221-289 (1027)
52 KOG3651 Protein kinase C, alph 95.9 0.028 6.1E-07 47.6 6.5 57 110-167 30-87 (429)
53 KOG3552 FERM domain protein FR 95.7 0.017 3.7E-07 55.3 5.2 55 112-168 77-131 (1298)
54 KOG3209 WW domain-containing p 95.6 0.032 6.8E-07 52.2 6.5 61 109-169 370-432 (984)
55 KOG3605 Beta amyloid precursor 95.3 0.032 6.9E-07 51.6 5.3 61 108-169 671-734 (829)
56 KOG0606 Microtubule-associated 93.8 0.12 2.6E-06 50.6 5.6 42 113-156 661-704 (1205)
57 KOG3606 Cell polarity protein 92.9 0.32 6.9E-06 40.8 6.1 59 108-167 192-251 (358)
58 KOG1892 Actin filament-binding 91.8 0.34 7.3E-06 47.1 5.5 61 108-170 958-1020(1629)
59 KOG1421 Predicted signaling-as 91.0 1 2.2E-05 42.5 7.5 69 109-180 861-931 (955)
60 KOG0609 Calcium/calmodulin-dep 90.4 0.59 1.3E-05 42.6 5.4 56 111-167 147-203 (542)
61 KOG3549 Syntrophins (type gamm 90.1 0.56 1.2E-05 40.7 4.8 55 112-167 82-137 (505)
62 KOG3571 Dishevelled 3 and rela 89.4 0.93 2E-05 41.1 5.8 59 110-169 277-339 (626)
63 KOG2921 Intramembrane metallop 88.3 0.84 1.8E-05 40.3 4.7 44 110-155 220-264 (484)
64 KOG3551 Syntrophins (type beta 86.4 0.81 1.8E-05 40.3 3.5 55 112-167 112-167 (506)
65 PF11874 DUF3394: Domain of un 83.5 1.6 3.5E-05 34.6 3.7 31 108-138 120-150 (183)
66 PF09340 NuA4: Histone acetylt 79.2 2.7 5.9E-05 28.7 3.2 23 7-29 1-23 (80)
67 COG5233 GRH1 Peripheral Golgi 75.4 7.2 0.00016 33.7 5.3 78 114-192 190-273 (417)
68 COG5233 GRH1 Peripheral Golgi 71.9 4.1 8.9E-05 35.1 3.1 29 113-141 66-94 (417)
69 KOG3605 Beta amyloid precursor 71.5 3.8 8.3E-05 38.5 3.0 46 114-159 760-805 (829)
70 PF10458 Val_tRNA-synt_C: Valy 68.3 16 0.00034 23.7 4.7 29 6-34 2-30 (66)
71 KOG3856 Uncharacterized conser 62.2 16 0.00035 27.0 4.2 26 4-29 13-38 (135)
72 KOG0353 ATP-dependent DNA heli 56.2 27 0.00059 31.2 5.2 47 4-53 28-80 (695)
73 PF02183 HALZ: Homeobox associ 54.0 41 0.00089 20.2 4.3 28 5-32 16-43 (45)
74 PF10073 DUF2312: Uncharacteri 53.1 44 0.00096 22.5 4.8 32 2-33 2-36 (74)
75 COG1669 Predicted nucleotidylt 51.0 12 0.00027 26.5 2.0 34 24-57 11-47 (97)
76 COG3750 Uncharacterized protei 50.6 40 0.00087 23.0 4.2 26 8-33 21-46 (85)
77 KOG1738 Membrane-associated gu 50.1 11 0.00023 35.3 1.9 39 108-148 222-262 (638)
78 PF05565 Sipho_Gp157: Siphovir 46.8 39 0.00086 26.0 4.4 29 5-33 58-86 (162)
79 COG0260 PepB Leucyl aminopepti 44.7 18 0.0004 33.0 2.5 28 113-141 301-328 (485)
80 PF02370 M: M protein repeat; 43.7 44 0.00095 16.9 2.7 16 16-31 2-17 (21)
81 PF05384 DegS: Sensor protein 42.4 51 0.0011 25.5 4.3 29 5-33 95-123 (159)
82 PF06305 DUF1049: Protein of u 39.5 43 0.00093 21.3 3.1 22 6-27 46-67 (68)
83 PF13600 DUF4140: N-terminal d 39.5 66 0.0014 22.4 4.3 24 6-29 75-98 (104)
84 PRK03760 hypothetical protein; 38.1 54 0.0012 23.9 3.7 26 109-135 88-113 (117)
85 PF13015 PRKCSH_1: Glucosidase 37.9 46 0.001 25.5 3.5 32 6-37 1-32 (154)
86 PRK13694 hypothetical protein; 36.5 87 0.0019 21.5 4.2 25 9-33 20-44 (83)
87 cd05397 NT_Pol-beta-like Nucle 34.9 39 0.00085 20.3 2.2 26 34-59 17-42 (49)
88 PRK00913 multifunctional amino 34.3 34 0.00074 31.3 2.6 27 114-141 303-329 (483)
89 TIGR02976 phageshock_pspB phag 34.0 1.4E+02 0.003 20.1 4.9 34 4-38 38-71 (75)
90 PF04977 DivIC: Septum formati 32.7 81 0.0018 20.4 3.7 22 6-27 29-50 (80)
91 PF06428 Sec2p: GDP/GTP exchan 32.7 93 0.002 22.1 4.1 26 8-33 8-33 (100)
92 cd05402 NT_PAP_TUTase Nucleoti 32.4 46 0.00099 23.4 2.6 45 17-61 2-46 (114)
93 KOG3938 RGS-GAIP interacting p 32.3 48 0.001 28.0 2.9 54 112-167 151-208 (334)
94 cd00433 Peptidase_M17 Cytosol 32.3 37 0.0008 30.9 2.5 27 114-141 289-315 (468)
95 cd00632 Prefoldin_beta Prefold 32.1 1E+02 0.0022 21.7 4.3 29 5-33 10-38 (105)
96 COG1382 GimC Prefoldin, chaper 32.0 95 0.0021 22.9 4.1 44 5-48 17-60 (119)
97 PRK05015 aminopeptidase B; Pro 30.8 45 0.00098 29.9 2.7 27 114-141 240-266 (424)
98 PF11285 DUF3086: Protein of u 28.5 62 0.0013 27.1 2.9 20 9-28 5-24 (283)
99 PF07061 Swi5: Swi5; InterPro 28.3 1.3E+02 0.0029 20.5 4.2 27 5-31 4-30 (83)
100 PF08581 Tup_N: Tup N-terminal 28.2 1.6E+02 0.0034 20.0 4.5 26 6-31 9-41 (79)
101 PF14703 DUF4463: Domain of un 27.7 1.2E+02 0.0026 20.0 3.9 26 8-33 6-31 (85)
102 COG1625 Fe-S oxidoreductase, r 27.6 48 0.001 29.6 2.3 30 112-141 3-33 (414)
103 PF06667 PspB: Phage shock pro 27.6 2E+02 0.0042 19.4 5.0 35 4-39 38-72 (75)
104 PF14275 DUF4362: Domain of un 27.5 2.3E+02 0.0049 20.1 5.5 35 129-164 1-35 (98)
105 PF07820 TraC: TraC-like prote 27.4 1.6E+02 0.0034 20.7 4.4 29 4-32 5-33 (92)
106 PF12325 TMF_TATA_bd: TATA ele 27.3 1.3E+02 0.0027 22.2 4.2 28 5-32 34-61 (120)
107 PF02643 DUF192: Uncharacteriz 27.2 42 0.0009 23.9 1.6 26 109-135 80-105 (108)
108 COG4043 Preprotein translocase 26.3 1E+02 0.0022 22.1 3.4 34 123-156 29-66 (111)
109 PF00883 Peptidase_M17: Cytoso 26.0 33 0.00071 29.5 1.0 27 114-141 134-160 (311)
110 PF05708 DUF830: Orthopoxvirus 25.6 2.8E+02 0.006 20.4 7.0 39 128-171 2-40 (158)
111 PRK00888 ftsB cell division pr 24.8 1.2E+02 0.0027 21.5 3.7 22 6-27 39-60 (105)
112 KOG1853 LIS1-interacting prote 24.7 1.1E+02 0.0024 25.6 3.8 29 5-33 31-59 (333)
113 PRK09458 pspB phage shock prot 24.3 2.3E+02 0.005 19.1 5.4 34 5-39 39-72 (75)
114 TIGR03741 PRTRC_E PRTRC system 24.2 2.2E+02 0.0047 20.4 4.8 31 148-180 3-33 (104)
115 PF09738 DUF2051: Double stran 24.1 2.6E+02 0.0056 24.0 6.1 64 6-69 217-288 (302)
116 PRK06531 yajC preprotein trans 24.0 48 0.001 24.1 1.4 16 126-141 35-50 (113)
117 PF11285 DUF3086: Protein of u 23.8 1.1E+02 0.0024 25.7 3.6 24 5-28 15-38 (283)
118 PF04111 APG6: Autophagy prote 23.8 1.4E+02 0.003 25.6 4.5 27 5-31 61-87 (314)
119 PF01920 Prefoldin_2: Prefoldi 23.5 1.9E+02 0.0042 19.7 4.5 27 6-32 74-100 (106)
120 PRK13746 aminoglycoside resist 23.3 60 0.0013 27.2 2.0 41 19-59 8-53 (262)
121 KOG2264 Exostosin EXT1L [Signa 23.2 1.2E+02 0.0026 28.6 4.0 26 4-29 89-114 (907)
122 PTZ00412 leucyl aminopeptidase 23.1 61 0.0013 30.2 2.2 26 115-141 349-374 (569)
123 PHA01750 hypothetical protein 22.2 1.8E+02 0.0039 19.1 3.6 25 5-29 46-70 (75)
124 PF11461 RILP: Rab interacting 22.0 1.3E+02 0.0028 19.4 2.9 26 7-32 2-27 (60)
125 PF08946 Osmo_CC: Osmosensory 21.8 1.8E+02 0.0038 17.7 3.3 15 7-21 25-39 (46)
126 COG2919 Septum formation initi 21.8 1.3E+02 0.0027 21.8 3.3 25 5-29 61-85 (117)
127 PF06838 Met_gamma_lyase: Meth 21.7 65 0.0014 28.6 2.0 25 126-152 91-115 (403)
128 PF05190 MutS_IV: MutS family 21.6 1.9E+02 0.0041 19.0 4.0 26 8-33 4-29 (92)
129 PRK05585 yajC preprotein trans 21.6 60 0.0013 23.3 1.5 17 125-141 50-66 (106)
130 PRK05886 yajC preprotein trans 21.6 60 0.0013 23.5 1.5 16 126-141 37-52 (109)
131 PF11253 DUF3052: Protein of u 21.2 71 0.0015 23.8 1.9 17 123-139 1-17 (127)
132 TIGR00739 yajC preprotein tran 21.2 67 0.0014 22.0 1.6 16 126-141 36-51 (84)
133 TIGR02338 gimC_beta prefoldin, 21.0 2.1E+02 0.0045 20.3 4.3 30 5-34 14-43 (110)
134 TIGR03595 Obg_CgtA_exten Obg f 21.0 70 0.0015 20.9 1.6 17 123-140 49-65 (69)
135 PF07106 TBPIP: Tat binding pr 20.6 1.4E+02 0.003 22.8 3.5 23 9-31 80-102 (169)
136 PF11365 DUF3166: Protein of u 20.0 2.2E+02 0.0048 20.1 4.0 67 4-75 18-87 (96)
No 1
>KOG3129 consensus 26S proteasome regulatory complex, subunit PSMD9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-46 Score=291.17 Aligned_cols=194 Identities=36% Similarity=0.646 Sum_probs=162.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCchhhhhhHhhHhHhh---hhhhhccc
Q 029301 1 MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAGD---DGGSNNQN 77 (195)
Q Consensus 1 ~~~~~~~~~~~~l~~~k~~iE~el~~~~~~L~~~~~~~~~~~lvd~eG~Pr~d~dl~~vr~~r~~i~~l---~~~i~~~~ 77 (195)
|+|+.+++++++||.+|++||.||++++++|+++++. |++||||.|||||+|+|+|+||++|++|+|| |+++|+++
T Consensus 14 ~ag~~~~~~~~eLm~~K~eiE~qin~~~~vL~~~~~~-Md~pLvd~eGfPRsDIDV~qVRtaRh~ii~LrNDh~el~~qi 92 (231)
T KOG3129|consen 14 MAGANTKSELKELMDKKTEIETQINELVEVLENNGGT-MDGPLVDAEGFPRSDIDVYQVRTARHNIICLRNDHKELTEQI 92 (231)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-CCCcccCCCCCccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 7999999999999999999999999999999997666 9999999999999999999999999999999 99999999
Q ss_pred chhhhhhhccc--c------CCCCCCCCCC-CCc-----ccccccCCceEEEEEcCCChhhhcCCCCCCEEEEECCee-C
Q 029301 78 PSILGTVQSAS--F------NNAVPRNSPA-AMD-----VDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVE-A 142 (195)
Q Consensus 78 ~~~~~~~~~~~--~------~~~a~~~a~~-~~~-----~~~~~~~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~-~ 142 (195)
+.+++.++... + ...+...+.. +++ .......||++|.+|.|+|||++|||+.||.|++|++.. .
T Consensus 93 ~~~l~q~hs~~~~~~~~~~~~t~a~~e~~~~~~~~an~~~~~gP~~~Fa~V~sV~~~SPA~~aGl~~gD~il~fGnV~sg 172 (231)
T KOG3129|consen 93 EVLLNQLHSERPTSRKEVTDDTGAEEEADSRAAGNANSMTSLGPMRPFAVVDSVVPGSPADEAGLCVGDEILKFGNVHSG 172 (231)
T ss_pred HHHHHHHhccccccchhhccccchhhccccccccccccccccCCccceEEEeecCCCChhhhhCcccCceEEEecccccc
Confidence 98887655441 1 1111111110 101 111334679999999999999999999999999999988 4
Q ss_pred CCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEeccCCCceeeeEE-EEeC
Q 029301 143 GDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCH-FRML 195 (195)
Q Consensus 143 ~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~~~~~~~~lGi~-l~p~ 195 (195)
++..++.+....+...++.+.++|.|.|+...+.++|..|+|+|.|||+ +.|+
T Consensus 173 n~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~L~ltP~~W~GrGLLGC~~i~pi 226 (231)
T KOG3129|consen 173 NFLPLQNIAAVVQSNEDQIVSVTVIREGQKVVLSLTPKKWQGRGLLGCNYIQPI 226 (231)
T ss_pred cchhHHHHHHHHHhccCcceeEEEecCCCEEEEEeCcccccCCcceeeeeeccc
Confidence 4555677777777788999999999999999999999999999999998 6664
No 2
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=99.64 E-value=2.7e-16 Score=131.20 Aligned_cols=159 Identities=14% Similarity=0.114 Sum_probs=131.4
Q ss_pred ccCCCCCCCCCCCCCCCCCCC---CCchhhhhhHhhHhHhh-------hhhhhcccchhh-h----hhhcc------ccC
Q 029301 32 SQSNGPGLSGNLVDSEGFPRT---DIDIHLVRSERRRLAGD-------DGGSNNQNPSIL-G----TVQSA------SFN 90 (195)
Q Consensus 32 ~~~~~~~~~~~lvd~eG~Pr~---d~dl~~vr~~r~~i~~l-------~~~i~~~~~~~~-~----~~~~~------~~~ 90 (195)
+.||+.....++|.++|+|.. +++++||+..+++++.+ +.+|++..+... + +|+.. +|+
T Consensus 31 ~~PGg~~d~~~vv~V~g~~~~~~G~l~ltTV~~~~a~l~~~l~a~l~~~~ei~p~e~i~~~G~sdee~~~~n~~~m~~Sq 110 (342)
T COG3480 31 EGPGGEEDLKQVVKVEGHEDKTSGHLNLTTVSVRDATLITYLYAWLSPQEEIVPREQVTPPGESDEEYERRNQFYMETSQ 110 (342)
T ss_pred ecCCCccccceeEEecCccCCCCceeEEEEEEcccCcHHHHHHhhhCCceeecchhhcCCCCCcHHHHHHHHHHHHHhhh
Confidence 467889999999999997654 59999999999999998 555665554332 1 44433 588
Q ss_pred CCCCCCCCCCCcccccccCCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEE-
Q 029301 91 NAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMR- 168 (195)
Q Consensus 91 ~~a~~~a~~~~~~~~~~~~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R- 168 (195)
+.|.++|+..+++++.+.+.++++..|..+|||... |+.||.|++|||++ +.+.+++..+++. ..|+.+++.+.|
T Consensus 111 ~~A~y~A~~~a~~pv~~~y~gvyv~~v~~~~~~~gk-l~~gD~i~avdg~~--f~s~~e~i~~v~~~k~Gd~VtI~~~r~ 187 (342)
T COG3480 111 NAAIYAAYKYAGKPVEVTYAGVYVLSVIDNSPFKGK-LEAGDTIIAVDGEP--FTSSDELIDYVSSKKPGDEVTIDYERH 187 (342)
T ss_pred hHHHHHHHHHcCCceEEEEeeEEEEEccCCcchhce-eccCCeEEeeCCee--cCCHHHHHHHHhccCCCCeEEEEEEec
Confidence 999999999999999999999999999999999887 99999999999999 9999999999987 689999999997
Q ss_pred CCEEEEEEEE--eccCCCceeeeEEEE
Q 029301 169 QGGLINLAVT--PRPWQGRGLLGCHFR 193 (195)
Q Consensus 169 ~g~~~~~~l~--~~~~~~~~~lGi~l~ 193 (195)
++.....+++ .....+++.||+.+.
T Consensus 188 ~~~~~~~~~tl~~~~~~g~~giGIsl~ 214 (342)
T COG3480 188 NETPEIVTITLIKNDDNGKAGIGISLV 214 (342)
T ss_pred cCCCceEEEEEEeeccCCcceeeeEee
Confidence 6655544444 334567888998763
No 3
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.57 E-value=5.1e-14 Score=97.10 Aligned_cols=67 Identities=31% Similarity=0.402 Sum_probs=61.6
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVT 178 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~ 178 (195)
.+++|.+|.++|||+++||++||+|++|||.+ +.++.++..++.. .+|+++.++|.|+|+..+++++
T Consensus 14 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~ 81 (82)
T PF13180_consen 14 GGVVVVSVIPGSPAAKAGLQPGDIILAINGKP--VNSSEDLVNILSKGKPGDTVTLTVLRDGEELTVEVT 81 (82)
T ss_dssp SSEEEEEESTTSHHHHTTS-TTEEEEEETTEE--SSSHHHHHHHHHCSSTTSEEEEEEEETTEEEEEEEE
T ss_pred CeEEEEEeCCCCcHHHCCCCCCcEEEEECCEE--cCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEE
Confidence 48999999999999999999999999999999 9999999998865 6899999999999999988875
No 4
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=99.45 E-value=4.3e-13 Score=101.46 Aligned_cols=84 Identities=24% Similarity=0.375 Sum_probs=67.5
Q ss_pred cCCceEEEEEcCCChhhhcCCCC-CCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEE--CCEEEEEEEEec-cCC
Q 029301 108 RRPFAVIDEITDASPAAEDGLQL-GDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR--QGGLINLAVTPR-PWQ 183 (195)
Q Consensus 108 ~~~~~~V~~V~~~SpA~~aGL~~-GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R--~g~~~~~~l~~~-~~~ 183 (195)
...+..|..|.|+|||++|||++ .|.|+.+++.. ..+.++|..++..+.++++.+.|.+ ....+.++++|. .|+
T Consensus 41 ~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~--l~~~~~l~~~v~~~~~~~l~L~Vyns~~~~vR~V~i~P~~~Wg 118 (138)
T PF04495_consen 41 EEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGL--LDDEDDLFELVEANENKPLQLYVYNSKTDSVREVTITPSRNWG 118 (138)
T ss_dssp CCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE----STCHHHHHHHHTTTS-EEEEEEETTTTCEEEEEE---TTSS
T ss_pred ccceEEEeEecCCCHHHHCCccccccEEEEcccee--cCCHHHHHHHHHHcCCCcEEEEEEECCCCeEEEEEEEcCCCCC
Confidence 34678899999999999999999 69999999988 8888999999999999999999986 456789999998 799
Q ss_pred CceeeeEEEE
Q 029301 184 GRGLLGCHFR 193 (195)
Q Consensus 184 ~~~~lGi~l~ 193 (195)
|+|.|||.+.
T Consensus 119 G~GlLGc~ig 128 (138)
T PF04495_consen 119 GRGLLGCHIG 128 (138)
T ss_dssp SSTSSSEEEE
T ss_pred CCeeeeEEec
Confidence 9999999875
No 5
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.43 E-value=2.3e-12 Score=88.35 Aligned_cols=67 Identities=19% Similarity=0.222 Sum_probs=61.2
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhC-CCCeEEEEEEECCEEEEEEEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLAVT 178 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~-~g~~v~l~V~R~g~~~~~~l~ 178 (195)
.+++|.+|.++|||+++||++||+|++|||.+ +.+|+++...+... .++.+.+++.|+|+..+++++
T Consensus 10 ~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~--v~~~~d~~~~l~~~~~g~~v~l~v~r~g~~~~~~~~ 77 (79)
T cd00991 10 AGVVIVGVIVGSPAENAVLHTGDVIYSINGTP--ITTLEDFMEALKPTKPGEVITVTVLPSTTKLTNVST 77 (79)
T ss_pred CcEEEEEECCCChHHhcCCCCCCEEEEECCEE--cCCHHHHHHHHhcCCCCCEEEEEEEECCEEEEEEEE
Confidence 47899999999999999999999999999999 99999999999874 588999999999988887765
No 6
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.42 E-value=3.9e-12 Score=86.94 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=65.0
Q ss_pred cccCCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEeccC
Q 029301 106 IIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPW 182 (195)
Q Consensus 106 ~~~~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~~~ 182 (195)
.....+++|.+|.++|||+. ||++||+|++|||.+ +.+|+++...+.. ..+..+.+++.|+|+..++++++..|
T Consensus 4 ~~~~~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~--v~~~~~~~~~l~~~~~~~~v~l~v~r~g~~~~~~v~l~~~ 78 (79)
T cd00986 4 DYTYHGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKP--FKEAEELIDYIQSKKEGDTVKLKVKREEKELPEDLILKTF 78 (79)
T ss_pred EEEecCEEEEEECCCCchhh-CCCCCCEEEEECCEE--CCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEecc
Confidence 34456789999999999987 899999999999999 9999999999885 57889999999999999988887654
No 7
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.39 E-value=5.7e-12 Score=85.65 Aligned_cols=67 Identities=33% Similarity=0.518 Sum_probs=60.2
Q ss_pred ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 029301 111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP 179 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~ 179 (195)
.++|.+|.++|||+++||++||+|++|||.+ +.+++++...+....+..+.+++.|+++..++.++|
T Consensus 13 ~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~--i~~~~~~~~~l~~~~~~~~~l~v~r~~~~~~~~l~~ 79 (79)
T cd00989 13 EPVIGEVVPGSPAAKAGLKAGDRILAINGQK--IKSWEDLVDAVQENPGKPLTLTVERNGETITLTLTP 79 (79)
T ss_pred CcEEEeECCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHHCCCceEEEEEEECCEEEEEEecC
Confidence 3789999999999999999999999999999 999999999988766778999999999877777653
No 8
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.33 E-value=1.3e-11 Score=85.15 Aligned_cols=70 Identities=24% Similarity=0.287 Sum_probs=62.5
Q ss_pred CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEEC-CEEEEEEEEec
Q 029301 109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQ-GGLINLAVTPR 180 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~-g~~~~~~l~~~ 180 (195)
..+++|..|.++|||+++||++||+|++|||.+ +.+| .++..++....++.+.+++.|+ ++..+++++|.
T Consensus 12 ~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~--i~~~~~~~~~~~l~~~~~~~i~l~v~r~~~~~~~~~~~~~ 84 (85)
T cd00988 12 DGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEP--VDGLSLEDVVKLLRGKAGTKVRLTLKRGDGEPREVTLTRL 84 (85)
T ss_pred CCeEEEEEecCCCCHHHcCCCCCCEEEEECCEE--cCCCCHHHHHHHhcCCCCCEEEEEEEcCCCCEEEEEEEEC
Confidence 456889999999999999999999999999999 8888 9998888777788999999998 88888888763
No 9
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.25 E-value=7.7e-11 Score=80.35 Aligned_cols=67 Identities=24% Similarity=0.375 Sum_probs=56.4
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR 180 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~ 180 (195)
.+++|.+|.++|||+++||++||+|++|||.+ +.+|.++...+ ..+..+.+++.|+|+..++.+++.
T Consensus 12 ~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~--v~~~~~~l~~~--~~~~~v~l~v~r~g~~~~~~v~~~ 78 (80)
T cd00990 12 GLGKVTFVRDDSPADKAGLVAGDELVAVNGWR--VDALQDRLKEY--QAGDPVELTVFRDDRLIEVPLTLA 78 (80)
T ss_pred CcEEEEEECCCChHHHhCCCCCCEEEEECCEE--hHHHHHHHHhc--CCCCEEEEEEEECCEEEEEEEEec
Confidence 45889999999999999999999999999999 88776654332 467789999999999888887653
No 10
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=99.24 E-value=8e-11 Score=104.24 Aligned_cols=78 Identities=21% Similarity=0.351 Sum_probs=68.7
Q ss_pred ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEeccCCCceeeeE
Q 029301 111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGC 190 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~~~~~~~~lGi 190 (195)
+++|.+|.++|||+++||++||+|++|||++ +.+|+++...+....++++.+++.|+|+..+++++|...+.. .+|+
T Consensus 204 g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~--V~s~~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~~~~~~-~iGi 280 (420)
T TIGR00054 204 EPVLSDVTPNSPAEKAGLKEGDYIQSINGEK--LRSWTDFVSAVKENPGKSMDIKVERNGETLSISLTPEAKGKI-GIGI 280 (420)
T ss_pred CcEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhCCCCceEEEEEECCEEEEEEEEEcCCCce-EEEE
Confidence 5789999999999999999999999999999 999999999998878888999999999999999988642222 3777
Q ss_pred E
Q 029301 191 H 191 (195)
Q Consensus 191 ~ 191 (195)
.
T Consensus 281 ~ 281 (420)
T TIGR00054 281 S 281 (420)
T ss_pred e
Confidence 4
No 11
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.24 E-value=9.1e-11 Score=81.42 Aligned_cols=65 Identities=22% Similarity=0.339 Sum_probs=58.1
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhC-CCCeEEEEEEECCEEEEEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLA 176 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~-~g~~v~l~V~R~g~~~~~~ 176 (195)
.+++|.+|.++|||+++||++||+|++|||.+ +.++.++...+... .+..+.+.+.|+|+..++.
T Consensus 24 ~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~--i~~~~~~~~~l~~~~~~~~i~l~v~r~g~~~~~~ 89 (90)
T cd00987 24 KGVLVASVDPGSPAAKAGLKPGDVILAVNGKP--VKSVADLRRALAELKPGDKVTLTVLRGGKELTVT 89 (90)
T ss_pred CEEEEEEECCCCHHHHcCCCcCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEee
Confidence 37889999999999999999999999999999 99999999988764 4789999999999876654
No 12
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.18 E-value=2.4e-10 Score=101.99 Aligned_cols=80 Identities=29% Similarity=0.425 Sum_probs=69.5
Q ss_pred ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEeccCC--C--ce
Q 029301 111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQ--G--RG 186 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~~~~--~--~~ 186 (195)
.++|.+|.++|||++|||++||+|++|||++ +.+|+++...+....++++.++|.|+|+..+++++|.... + .+
T Consensus 222 ~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~--V~s~~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~~~~~~g~~~~ 299 (449)
T PRK10779 222 EPVLAEVQPNSAASKAGLQAGDRIVKVDGQP--LTQWQTFVTLVRDNPGKPLALEIERQGSPLSLTLTPDSKPGNGKAEG 299 (449)
T ss_pred CcEEEeeCCCCHHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhCCCCEEEEEEEECCEEEEEEEEeeeecCCCceee
Confidence 3689999999999999999999999999999 9999999999988788899999999999999998886321 2 35
Q ss_pred eeeEEE
Q 029301 187 LLGCHF 192 (195)
Q Consensus 187 ~lGi~l 192 (195)
.+|+..
T Consensus 300 ~iGi~~ 305 (449)
T PRK10779 300 FAGVVP 305 (449)
T ss_pred EEEEec
Confidence 688854
No 13
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=99.16 E-value=5.6e-10 Score=97.52 Aligned_cols=86 Identities=26% Similarity=0.374 Sum_probs=71.9
Q ss_pred cccCCceEEEEEc--------CCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEE
Q 029301 106 IIRRPFAVIDEIT--------DASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAV 177 (195)
Q Consensus 106 ~~~~~~~~V~~V~--------~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l 177 (195)
.+...++.|.+.. .+|||++|||++||+|++|||.+ +.+|+++.+++....++++.++|.|+|+..++.+
T Consensus 101 ~l~t~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~--V~s~~DL~~iL~~~~g~~V~LtV~R~Ge~~tv~V 178 (402)
T TIGR02860 101 KLNTKGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEK--IKNMDDLANLINKAGGEKLTLTIERGGKIIETVI 178 (402)
T ss_pred EEecCEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhCCCCeEEEEEEECCEEEEEEE
Confidence 3445677765542 26999999999999999999999 9999999999988778899999999999999999
Q ss_pred Eec--cCCCceeeeEEEE
Q 029301 178 TPR--PWQGRGLLGCHFR 193 (195)
Q Consensus 178 ~~~--~~~~~~~lGi~l~ 193 (195)
.|. ..++.+.||++++
T Consensus 179 ~Pv~~~~d~~ykLGl~Vr 196 (402)
T TIGR02860 179 KPVKDKEEGRYRIGLYIR 196 (402)
T ss_pred EEeeeCCCCCEEEEEEEE
Confidence 875 2246789999875
No 14
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.14 E-value=4.6e-10 Score=99.54 Aligned_cols=83 Identities=23% Similarity=0.284 Sum_probs=70.4
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEeccCC-----
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPWQ----- 183 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~~~~----- 183 (195)
.+++|.+|.++|||+++||++||+|++|||++ +.++.++...+.. ..++.+.++|.|+|+..++++++..+.
T Consensus 257 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~--i~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~ 334 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAGLKAGDVILSVNGKP--ISSFADLRRAIGTLKPGKKVTLGILRKGKEKTITVTLGASPEEQAS 334 (428)
T ss_pred CceEEEEccCCCChHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECcCCCcccc
Confidence 57899999999999999999999999999999 9999999998876 568899999999999998888765332
Q ss_pred -CceeeeEEEEe
Q 029301 184 -GRGLLGCHFRM 194 (195)
Q Consensus 184 -~~~~lGi~l~p 194 (195)
....+|+.+.+
T Consensus 335 ~~~~~lGi~~~~ 346 (428)
T TIGR02037 335 SSNPFLGLTVAN 346 (428)
T ss_pred ccccccceEEec
Confidence 12457776654
No 15
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.10 E-value=4.1e-10 Score=74.67 Aligned_cols=55 Identities=29% Similarity=0.376 Sum_probs=50.3
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVI 166 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V 166 (195)
.+++|.+|.++|||+.+||++||+|++|||.+ +.+| +++...++...|+++.+++
T Consensus 13 ~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~--v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 13 GGVVVLSVEPGSPAERAGLQAGDVILAVNGTD--VKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 47899999999999999999999999999999 8888 9999999887788888876
No 16
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.08 E-value=4.4e-10 Score=100.35 Aligned_cols=103 Identities=15% Similarity=0.044 Sum_probs=81.3
Q ss_pred hhhhhhHhhHhHhh-hhhhhcccchhhh---hhhccccCCCCCCCCCCCCcccccccCCceEEEEEcCCChhhhcCCCCC
Q 029301 56 IHLVRSERRRLAGD-DGGSNNQNPSILG---TVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLG 131 (195)
Q Consensus 56 l~~vr~~r~~i~~l-~~~i~~~~~~~~~---~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~V~~V~~~SpA~~aGL~~G 131 (195)
-+.-+..++|++.+ .+.++|.+.++.- .|... .....+.|.+|.++|||++|||++|
T Consensus 87 ~f~~k~~~~R~~i~~AGp~~N~ila~~~~~~~~~~G-------------------~~~~~~lV~~V~~~SpA~kAGLk~G 147 (449)
T PRK10779 87 AFNNKTVGQRAAIIAAGPIANFIFAIFAYWLVFIIG-------------------VPGVRPVVGEIAPNSIAAQAQIAPG 147 (449)
T ss_pred hhccCCHHHhhhhhhhhHHHHHHHHHHHHHHHHhcC-------------------cccCCccccccCCCCHHHHcCCCCC
Confidence 45667889999988 9999999776432 33211 1112357899999999999999999
Q ss_pred CEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEe
Q 029301 132 DQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTP 179 (195)
Q Consensus 132 D~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~ 179 (195)
|+|++|||++ +.+|+++...+.. ..++++.++|.|+|+..+++++.
T Consensus 148 DvI~~vnG~~--V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l 194 (449)
T PRK10779 148 TELKAVDGIE--TPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKTL 194 (449)
T ss_pred CEEEEECCEE--cCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEEe
Confidence 9999999999 9999999887765 46778999999999877666544
No 17
>PRK10139 serine endoprotease; Provisional
Probab=99.07 E-value=1.1e-09 Score=97.89 Aligned_cols=69 Identities=22% Similarity=0.292 Sum_probs=63.6
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR 180 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~ 180 (195)
.+++|.+|.++|||+++||++||+|++|||++ +.+|+++...+.. ..|+++.++|.|+|+..++++++.
T Consensus 290 ~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~--V~s~~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~~~ 359 (455)
T PRK10139 290 RGAFVSEVLPNSGSAKAGVKAGDIITSLNGKP--LNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLD 359 (455)
T ss_pred CceEEEEECCCChHHHCCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEC
Confidence 47899999999999999999999999999999 9999999998876 678899999999999988888764
No 18
>PRK10898 serine endoprotease; Provisional
Probab=99.07 E-value=1.4e-09 Score=94.26 Aligned_cols=71 Identities=24% Similarity=0.398 Sum_probs=65.2
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEeccC
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPW 182 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~~~ 182 (195)
.+++|.+|.++|||+++||++||+|++|||++ +.++.++...+.. ..|+.+.+++.|+|+..++.+++..|
T Consensus 279 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~--V~s~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~ 350 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAGIQVNDLIISVNNKP--AISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQEY 350 (353)
T ss_pred CeEEEEEECCCChHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEeccC
Confidence 57899999999999999999999999999999 9999999988876 67889999999999999998887655
No 19
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=99.06 E-value=1.2e-09 Score=94.64 Aligned_cols=70 Identities=29% Similarity=0.351 Sum_probs=64.2
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEecc
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRP 181 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~~ 181 (195)
.+++|..|.++|||+++||++||+|++|||++ +.+++++...+.. ..|+++.++|.|+|+..++.+++..
T Consensus 278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~--V~s~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~ 348 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAGILVRDVILKYDGKD--VIGAEELMDRIAETRPGSKVMVTVLRQGKQLELPVTIDE 348 (351)
T ss_pred ccceEeecCCCChHHHCCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEecC
Confidence 47899999999999999999999999999999 9999999998876 6788999999999999988887753
No 20
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=99.04 E-value=1.7e-09 Score=89.97 Aligned_cols=67 Identities=16% Similarity=0.121 Sum_probs=61.1
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVT 178 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~ 178 (195)
.+..|..+.++|||+++||++||+|++|||++ +.+++++...+.. ..++.+.++|.|+|+..++.+.
T Consensus 191 ~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~--i~~~~~~~~~l~~~~~~~~v~l~V~R~G~~~~i~v~ 258 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSGLQDGDIAVALNGLD--LRDPEQAFQALQMLREETNLTLTVERDGQREDIYVR 258 (259)
T ss_pred eEEEEEecCCCCHHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCeEEEEEEECCEEEEEEEE
Confidence 57889999999999999999999999999999 9999999998887 5678999999999998887764
No 21
>PRK10942 serine endoprotease; Provisional
Probab=98.98 E-value=4e-09 Score=94.79 Aligned_cols=69 Identities=20% Similarity=0.298 Sum_probs=62.9
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR 180 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~ 180 (195)
.+++|..|.++|||++|||++||+|++|||++ +.+|+++...+.. ..++.+.++|.|+|+..++.+++.
T Consensus 311 ~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~--V~s~~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v~l~ 380 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKP--ISSFAALRAQVGTMPVGSKLTLGLLRDGKPVNVNVELQ 380 (473)
T ss_pred CceEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCeEEEEEEEeC
Confidence 57899999999999999999999999999999 9999999998876 568899999999999888887653
No 22
>PRK10139 serine endoprotease; Provisional
Probab=98.93 E-value=6.9e-09 Score=92.84 Aligned_cols=65 Identities=25% Similarity=0.283 Sum_probs=58.9
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAV 177 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l 177 (195)
.+++|.+|.++|||+++||++||+|++|||++ +.+|+++...+.... +++.++|.|+|+...+.+
T Consensus 390 ~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~--v~~~~~~~~~l~~~~-~~v~l~v~R~g~~~~~~~ 454 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDR--VNSIAEMRKVLAAKP-AIIALQIVRGNESIYLLL 454 (455)
T ss_pred CceEEEEeCCCChHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhCC-CeEEEEEEECCEEEEEEe
Confidence 36889999999999999999999999999999 999999999998754 689999999998877664
No 23
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=98.92 E-value=4.8e-09 Score=92.33 Aligned_cols=72 Identities=18% Similarity=0.197 Sum_probs=59.4
Q ss_pred EEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEE-ECCEEEEEEEEeccCCCceeeeEEE
Q 029301 114 IDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM-RQGGLINLAVTPRPWQGRGLLGCHF 192 (195)
Q Consensus 114 V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~-R~g~~~~~~l~~~~~~~~~~lGi~l 192 (195)
|.+|.|+|||+++||++||+|++|||++ +.+|.++..++. +..+.++|. |+|+..++.+.+... --||+.+
T Consensus 2 I~~V~pgSpAe~AGLe~GD~IlsING~~--V~Dw~D~~~~l~---~e~l~L~V~~rdGe~~~l~Ie~~~d---edlG~~f 73 (433)
T TIGR03279 2 ISAVLPGSIAEELGFEPGDALVSINGVA--PRDLIDYQFLCA---DEELELEVLDANGESHQIEIEKDLD---EDLGLEF 73 (433)
T ss_pred cCCcCCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHhc---CCcEEEEEEcCCCeEEEEEEecCCC---CCCcEEe
Confidence 5679999999999999999999999999 999999888774 356888886 789888888877532 2466655
Q ss_pred E
Q 029301 193 R 193 (195)
Q Consensus 193 ~ 193 (195)
.
T Consensus 74 ~ 74 (433)
T TIGR03279 74 T 74 (433)
T ss_pred c
Confidence 3
No 24
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.88 E-value=1.1e-08 Score=90.67 Aligned_cols=65 Identities=28% Similarity=0.412 Sum_probs=59.3
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLA 176 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~ 176 (195)
.+++|.+|.++|||+++||++||+|++|||++ +.+++++.+++.. ..++.+.++|.|+|+...+.
T Consensus 362 ~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~--V~s~~d~~~~l~~~~~g~~v~l~v~R~g~~~~~~ 427 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAGLQPGDVILSVNQQP--VSSVAELRKVLDRAKKGGRVALLILRGGATIFVT 427 (428)
T ss_pred CceEEEEeCCCCHHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEE
Confidence 47899999999999999999999999999999 9999999999987 46889999999999877654
No 25
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.88 E-value=1.5e-08 Score=89.06 Aligned_cols=67 Identities=21% Similarity=0.234 Sum_probs=58.2
Q ss_pred ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 029301 111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP 179 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~ 179 (195)
+++|..|.++|||+++||++||+|++|||++ +. ++.++...+....|..+.++|.|+|+..+++++.
T Consensus 103 g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~--v~~~~~~~~~~~l~g~~g~~v~ltv~r~g~~~~~~l~r 171 (389)
T PLN00049 103 GLVVVAPAPGGPAARAGIRPGDVILAIDGTS--TEGLSLYEAADRLQGPEGSSVELTLRRGPETRLVTLTR 171 (389)
T ss_pred cEEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEe
Confidence 6889999999999999999999999999999 65 4578878887777889999999999877766643
No 26
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.87 E-value=7.6e-09 Score=89.04 Aligned_cols=67 Identities=27% Similarity=0.330 Sum_probs=56.1
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCEEEEEEEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGGLINLAVT 178 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~ 178 (195)
.+++|..|.++|||+++||++||+|++|||++ +.+| .++...+....|.++.+++.|+|+..+++++
T Consensus 62 ~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~--v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~v~ 130 (334)
T TIGR00225 62 GEIVIVSPFEGSPAEKAGIKPGDKIIKINGKS--VAGMSLDDAVALIRGKKGTKVSLEILRAGKSKPLTFT 130 (334)
T ss_pred CEEEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHhccCCCCCEEEEEEEeCCCCceEEEE
Confidence 45889999999999999999999999999999 8775 6777777777788999999998765544443
No 27
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.86 E-value=1.6e-08 Score=68.85 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=47.1
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVI 166 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V 166 (195)
.+++|..|.++|||+++||++||+|++|||.+ +. +++++...+....+ ++.+.+
T Consensus 26 ~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~--i~~~~~~~~~~~l~~~~~-~v~l~v 81 (82)
T cd00992 26 GGIFVSRVEPGGPAERGGLRVGDRILEVNGVS--VEGLTHEEAVELLKNSGD-EVTLTV 81 (82)
T ss_pred CCeEEEEECCCChHHhCCCCCCCEEEEECCEE--cCccCHHHHHHHHHhCCC-eEEEEE
Confidence 56899999999999999999999999999999 87 89999998887544 666654
No 28
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=98.83 E-value=2.2e-08 Score=68.43 Aligned_cols=55 Identities=16% Similarity=0.300 Sum_probs=47.1
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIM 167 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~ 167 (195)
.+++|.+|.++|||+.+||++||.|++|||.+ +. +..++...++...+ +++|+|+
T Consensus 25 ~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~--v~~~~~~~~~~~l~~~~~-~v~L~V~ 81 (81)
T PF00595_consen 25 KGVFVSSVVPGSPAERAGLKVGDRILEINGQS--VRGMSHDEVVQLLKSASN-PVTLTVQ 81 (81)
T ss_dssp EEEEEEEECTTSHHHHHTSSTTEEEEEETTEE--STTSBHHHHHHHHHHSTS-EEEEEEE
T ss_pred CCEEEEEEeCCChHHhcccchhhhhheeCCEe--CCCCCHHHHHHHHHCCCC-cEEEEEC
Confidence 57899999999999999999999999999999 55 56777778877655 8888764
No 29
>PRK10942 serine endoprotease; Provisional
Probab=98.83 E-value=2.5e-08 Score=89.70 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=58.8
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAV 177 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l 177 (195)
.+++|.+|.++|||+++||++||+|++|||++ +.+|+++.+.+.... +.+.++|.|+|..+.+.+
T Consensus 408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~--V~s~~dl~~~l~~~~-~~v~l~V~R~g~~~~v~~ 472 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQP--VKNIAELRKILDSKP-SVLALNIQRGDSSIYLLM 472 (473)
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhCC-CeEEEEEEECCEEEEEEe
Confidence 46889999999999999999999999999999 999999999998754 689999999998877654
No 30
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.80 E-value=2.8e-08 Score=67.72 Aligned_cols=58 Identities=31% Similarity=0.470 Sum_probs=46.4
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHH--HHhhCCCCeEEEEEEECC
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAA--EGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~--~l~~~~g~~v~l~V~R~g 170 (195)
.+++|..|.++|||+.+||++||+|++|||.. +.++.+... .+.. .+..+.+.+.|++
T Consensus 26 ~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~--v~~~~~~~~~~~~~~-~~~~~~l~i~r~~ 85 (85)
T smart00228 26 GGVVVSSVVPGSPAAKAGLKVGDVILEVNGTS--VEGLTHLEAVDLLKK-AGGKVTLTVLRGG 85 (85)
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEEeCC
Confidence 57999999999999999999999999999999 776544433 3333 3458888888864
No 31
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.65 E-value=6.4e-08 Score=85.84 Aligned_cols=101 Identities=16% Similarity=0.028 Sum_probs=76.2
Q ss_pred hhhhhhHhhHhHhh-hhhhhcccchhhh---hhhccccCCCCCCCCCCCCcccccccCCceEEEEEcCCChhhhcCCCCC
Q 029301 56 IHLVRSERRRLAGD-DGGSNNQNPSILG---TVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLG 131 (195)
Q Consensus 56 l~~vr~~r~~i~~l-~~~i~~~~~~~~~---~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~V~~V~~~SpA~~aGL~~G 131 (195)
-+.-+..+.|++.+ .+.++|.+.+.+- .|... . .....+++|.+|.++|||++|||++|
T Consensus 87 ~f~~~~~~~r~~i~~aGp~~N~~~a~~~~~~~~~~G---------------~--~~~~~g~~V~~V~~~SpA~~AGL~~G 149 (420)
T TIGR00054 87 LFNNKSVFQKAIIIFAGPLANFIFAIFVYIFISLIG---------------V--PGYEVGPVIELLDKNSIALEAGIEPG 149 (420)
T ss_pred hhccCCHHHHHHhhhcccHHHHHHHHHHHHHHHhcC---------------C--ccCCCCceeeccCCCCHHHHcCCCCC
Confidence 45556777777777 8888888765432 22111 0 00135678999999999999999999
Q ss_pred CEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEE
Q 029301 132 DQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLA 176 (195)
Q Consensus 132 D~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~ 176 (195)
|+|+++||++ +.+++++...+.... .++.+.+.|+++..++.
T Consensus 150 DvI~~vng~~--v~~~~dl~~~ia~~~-~~v~~~I~r~g~~~~l~ 191 (420)
T TIGR00054 150 DEILSVNGNK--IPGFKDVRQQIADIA-GEPMVEILAERENWTFE 191 (420)
T ss_pred CEEEEECCEE--cCCHHHHHHHHHhhc-ccceEEEEEecCceEec
Confidence 9999999999 999999999887755 67889999877665543
No 32
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.57 E-value=3.2e-07 Score=81.02 Aligned_cols=68 Identities=25% Similarity=0.358 Sum_probs=56.7
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEEC--CEEEEEEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ--GGLINLAV 177 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~--g~~~~~~l 177 (195)
-...|.++.+++||++|||++||.|++|||.++.-.+.+++...++..+|..++|++.|. ++.+++++
T Consensus 112 ~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~~~k~~~v~l 181 (406)
T COG0793 112 GGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAGGGKPFTVTL 181 (406)
T ss_pred CCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcCCCceeEEEE
Confidence 668899999999999999999999999999992223357788888889999999999996 44555554
No 33
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=9.3e-07 Score=76.37 Aligned_cols=72 Identities=28% Similarity=0.299 Sum_probs=65.4
Q ss_pred cCCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEecc
Q 029301 108 RRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRP 181 (195)
Q Consensus 108 ~~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~~ 181 (195)
...++.|.+|.++|||+++|++.||+|+++||.+ +.+..++...+.. ..|..+.+.+.|+|+..++.++...
T Consensus 268 ~~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~--v~~~~~l~~~v~~~~~g~~v~~~~~r~g~~~~~~v~l~~ 340 (347)
T COG0265 268 VAAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKP--VASLSDLVAAVASNRPGDEVALKLLRGGKERELAVTLGD 340 (347)
T ss_pred CCCceEEEecCCCChHHHcCCCCCCEEEEECCEE--ccCHHHHHHHHhccCCCCEEEEEEEECCEEEEEEEEecC
Confidence 3567899999999999999999999999999999 9999999998876 5699999999999999999887754
No 34
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.36 E-value=1.9e-06 Score=80.23 Aligned_cols=69 Identities=22% Similarity=0.328 Sum_probs=54.7
Q ss_pred CceEEEEEcCCChhhhc-CCCCCCEEEEEC--Cee-CCC--CcHHHHHHHHhhCCCCeEEEEEEEC---CEEEEEEEE
Q 029301 110 PFAVIDEITDASPAAED-GLQLGDQVLKFG--TVE-AGD--NLLERLAAEGRKNQGNAVPVVIMRQ---GGLINLAVT 178 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~a-GL~~GD~I~~in--g~~-~~v--~~~~~l~~~l~~~~g~~v~l~V~R~---g~~~~~~l~ 178 (195)
.+.+|.+|.|||||+++ ||++||+|++|| |.+ ..+ .+++++...|++..|.+|.|+|.|+ +...+++++
T Consensus 255 ~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~~~~~~~~~vtl~ 332 (667)
T PRK11186 255 DYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRIVTLT 332 (667)
T ss_pred CeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeCCCCCceEEEEEE
Confidence 45788999999999998 999999999999 443 112 3466888899888999999999983 455666654
No 35
>KOG3834 consensus Golgi reassembly stacking protein GRASP65, contains PDZ domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=2.1e-06 Score=74.87 Aligned_cols=78 Identities=24% Similarity=0.431 Sum_probs=66.7
Q ss_pred EEEEEcCCChhhhcCCCC-CCEEEEE-CCeeCCCCcHHHHHHHHhhCCCCeEEEEEEEC--CEEEEEEEEec-cCCCcee
Q 029301 113 VIDEITDASPAAEDGLQL-GDQVLKF-GTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ--GGLINLAVTPR-PWQGRGL 187 (195)
Q Consensus 113 ~V~~V~~~SpA~~aGL~~-GD~I~~i-ng~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~--g~~~~~~l~~~-~~~~~~~ 187 (195)
.|.+|.++|||+.|||++ +|.|+.+ +.+- ...+|+..+|..+.++++.+.|+.- +..++++++|. .|+|.|.
T Consensus 112 Hvl~V~p~SPaalAgl~~~~DYivG~~~~~~---~~~eDl~~lIeshe~kpLklyVYN~D~d~~ReVti~pn~awGgeg~ 188 (462)
T KOG3834|consen 112 HVLSVEPNSPAALAGLRPYTDYIVGIWDAVM---HEEEDLFTLIESHEGKPLKLYVYNHDTDSCREVTITPNSAWGGEGA 188 (462)
T ss_pred eeeecCCCCHHHhcccccccceEecchhhhc---cchHHHHHHHHhccCCCcceeEeecCCCccceEEeeccccccccce
Confidence 477999999999999995 7999999 5544 6788999999999999999999863 45688999987 7999999
Q ss_pred eeEEEE
Q 029301 188 LGCHFR 193 (195)
Q Consensus 188 lGi~l~ 193 (195)
|||.|.
T Consensus 189 lGCgIG 194 (462)
T KOG3834|consen 189 LGCGIG 194 (462)
T ss_pred eccccc
Confidence 999764
No 36
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=98.24 E-value=6.6e-06 Score=68.86 Aligned_cols=62 Identities=13% Similarity=0.236 Sum_probs=51.6
Q ss_pred EEcCC---ChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEe
Q 029301 116 EITDA---SPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTP 179 (195)
Q Consensus 116 ~V~~~---SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~ 179 (195)
.+.|+ +-..++|||+||++++|||.+ ..+.++..++++. .....++|+|+|+|+..++.+..
T Consensus 210 rl~Pgkd~~lF~~~GLq~GDva~sING~d--L~D~~qa~~l~~~L~~~tei~ltVeRdGq~~~i~i~l 275 (276)
T PRK09681 210 AVKPGADRSLFDASGFKEGDIAIALNQQD--FTDPRAMIALMRQLPSMDSIQLTVLRKGARHDISIAL 275 (276)
T ss_pred EECCCCcHHHHHHcCCCCCCEEEEeCCee--CCCHHHHHHHHHHhccCCeEEEEEEECCEEEEEEEEc
Confidence 34565 345789999999999999999 9999888888876 56778999999999998887643
No 37
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=98.15 E-value=1.8e-05 Score=55.38 Aligned_cols=65 Identities=20% Similarity=0.153 Sum_probs=45.9
Q ss_pred CceEEEEEcCC--------ChhhhcCCC--CCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECC-EEEEEE
Q 029301 110 PFAVIDEITDA--------SPAAEDGLQ--LGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG-GLINLA 176 (195)
Q Consensus 110 ~~~~V~~V~~~--------SpA~~aGL~--~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g-~~~~~~ 176 (195)
-+..|..+.++ ||..+.|+. +||.|++|||++ +..-.++..+|.+..|+.+.|+|.+.+ ..+++.
T Consensus 12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~--v~~~~~~~~lL~~~agk~V~Ltv~~~~~~~R~v~ 87 (88)
T PF14685_consen 12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQP--VTADANPYRLLEGKAGKQVLLTVNRKPGGARTVV 87 (88)
T ss_dssp TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE---BTTB-HHHHHHTTTTSEEEEEEE-STT-EEEEE
T ss_pred CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEE--CCCCCCHHHHhcccCCCEEEEEEecCCCCceEEE
Confidence 44566666664 888888865 999999999999 888888999999999999999999865 455554
No 38
>KOG3553 consensus Tax interaction protein TIP1 [Cell wall/membrane/envelope biogenesis]
Probab=98.14 E-value=3e-06 Score=60.02 Aligned_cols=51 Identities=16% Similarity=0.181 Sum_probs=40.1
Q ss_pred cccCCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh
Q 029301 106 IIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK 156 (195)
Q Consensus 106 ~~~~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~ 156 (195)
.....+.+|..|.++|||+.|||+.+|+|+++||...+.-+.+...+++..
T Consensus 55 ~ytD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k 105 (124)
T KOG3553|consen 55 SYTDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITK 105 (124)
T ss_pred CcCCccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhH
Confidence 345578999999999999999999999999999988223345555555544
No 39
>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only]
Probab=98.09 E-value=2.6e-05 Score=71.71 Aligned_cols=66 Identities=26% Similarity=0.351 Sum_probs=60.8
Q ss_pred eEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 029301 112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR 180 (195)
Q Consensus 112 ~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~ 180 (195)
.+|..|.++|||++. |++||++++||+.- +.++.++.+.+....|+.+.++|+|+|+..+++++.+
T Consensus 305 LvV~~vL~~gpa~k~-Le~GDillavN~t~--l~df~~l~~iLDegvgk~l~LtI~Rggqelel~vtvq 370 (955)
T KOG1421|consen 305 LVVETVLPEGPAEKK-LEPGDILLAVNSTC--LNDFEALEQILDEGVGKNLELTIQRGGQELELTVTVQ 370 (955)
T ss_pred EEEEEeccCCchhhc-cCCCcEEEEEccee--hHHHHHHHHHHhhccCceEEEEEEeCCEEEEEEEEec
Confidence 578899999999998 99999999999999 8899999999988899999999999999988888765
No 40
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=97.71 E-value=6.9e-05 Score=67.20 Aligned_cols=62 Identities=23% Similarity=0.387 Sum_probs=49.1
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR 180 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~ 180 (195)
-+.+|..|.++|||..|||.+||.|++|||.. ..+. ..+.+..+.+.+.|.|..+++.+++.
T Consensus 462 g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~s---~~l~------~~~~~d~i~v~~~~~~~L~e~~v~~~ 523 (558)
T COG3975 462 GHEKITFVFPGGPAYKAGLSPGDKIVAINGIS---DQLD------RYKVNDKIQVHVFREGRLREFLVKLG 523 (558)
T ss_pred CeeEEEecCCCChhHhccCCCccEEEEEcCcc---cccc------ccccccceEEEEccCCceEEeecccC
Confidence 44588999999999999999999999999984 1111 12467789999999998888776553
No 41
>KOG3834 consensus Golgi reassembly stacking protein GRASP65, contains PDZ domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.00018 Score=63.04 Aligned_cols=80 Identities=23% Similarity=0.326 Sum_probs=61.4
Q ss_pred CceEEEEEcCCChhhhcCCCC-CCEEEEECCeeCCCCcHHH-HHHHHhhCCCCeEEEEEEE--CCEEEEEEEEec-cCCC
Q 029301 110 PFAVIDEITDASPAAEDGLQL-GDQVLKFGTVEAGDNLLER-LAAEGRKNQGNAVPVVIMR--QGGLINLAVTPR-PWQG 184 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~-GD~I~~ing~~~~v~~~~~-l~~~l~~~~g~~v~l~V~R--~g~~~~~~l~~~-~~~~ 184 (195)
.+..|..|.++|||.+|||.+ -|.|++|||.. .+.-+| |...++.+..+ ++++|.. .-..+.+.+++. .|.|
T Consensus 15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~r--L~~dnd~Lk~llk~~sek-Vkltv~n~kt~~~R~v~I~ps~~wgg 91 (462)
T KOG3834|consen 15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIR--LNKDNDTLKALLKANSEK-VKLTVYNSKTQEVRIVEIVPSNNWGG 91 (462)
T ss_pred eeEEEEEeecCChHHhcCcchhhhhhheeCccc--ccCchHHHHHHHHhcccc-eEEEEEecccceeEEEEecccccccc
Confidence 456788999999999999998 69999999999 665444 44455555444 8998875 345677888887 7988
Q ss_pred ceeeeEEEE
Q 029301 185 RGLLGCHFR 193 (195)
Q Consensus 185 ~~~lGi~l~ 193 (195)
. +||+.++
T Consensus 92 q-llGvsvr 99 (462)
T KOG3834|consen 92 Q-LLGVSVR 99 (462)
T ss_pred c-ccceEEE
Confidence 7 8998765
No 42
>KOG1320 consensus Serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.0004 Score=62.14 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=59.5
Q ss_pred ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhC-CCCeEEEEEEECCEEEEEEEEec
Q 029301 111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLAVTPR 180 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~-~g~~v~l~V~R~g~~~~~~l~~~ 180 (195)
.+.|..|.|++++...|+.+||+|++|||++ +.+..++...+... ....+.+..+|..+..++.+.+.
T Consensus 399 ~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~--V~n~~~l~~~i~~~~~~~~v~vl~~~~~e~~tl~Il~~ 467 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYGLKPGDQVVKVNGKP--VKNLKHLYELIEECSTEDKVAVLDRRSAEDATLEILPE 467 (473)
T ss_pred EEEEEEeccCCCcccccccCCCEEEEECCEE--eechHHHHHHHHhcCcCceEEEEEecCccceeEEeccc
Confidence 4678899999999999999999999999999 99999999999874 45677777778888888888765
No 43
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=97.50 E-value=0.00034 Score=57.09 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=50.0
Q ss_pred cCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEE
Q 029301 118 TDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAV 177 (195)
Q Consensus 118 ~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l 177 (195)
.++|..+..|||.||+.+++|+.+ ..+.+++..+++. ..-..+.++|.|+|....+.+
T Consensus 215 kd~slF~~sglq~GDIavaiNnld--ltdp~~m~~llq~l~~m~s~qlTv~R~G~rhdInV 273 (275)
T COG3031 215 KDGSLFYKSGLQRGDIAVAINNLD--LTDPEDMFRLLQMLRNMPSLQLTVIRRGKRHDINV 273 (275)
T ss_pred CCcchhhhhcCCCcceEEEecCcc--cCCHHHHHHHHHhhhcCcceEEEEEecCccceeee
Confidence 456888999999999999999999 9999999998886 444679999999998877665
No 44
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=97.19 E-value=0.0025 Score=55.28 Aligned_cols=68 Identities=22% Similarity=0.352 Sum_probs=55.9
Q ss_pred ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCe---EEEEEEE-CCEE--------EEEEEE
Q 029301 111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNA---VPVVIMR-QGGL--------INLAVT 178 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~---v~l~V~R-~g~~--------~~~~l~ 178 (195)
.+.+.++..+|+|..+|+++||.|+++|+.+ +.+|+++...+....+.. +.+.+.| ++.. ..+.+.
T Consensus 130 ~~~~~~v~~~s~a~~a~l~~Gd~iv~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 207 (375)
T COG0750 130 SPVVGEVAPKSAAALAGLRPGDRIVAVDGEK--VASWDDVRRLLVAAAGDVFNLLTILVIRLDGEAHAVAAEIIKSLGLT 207 (375)
T ss_pred cCeeeecCCCCHHHHcCCCCCCEEEeECCEE--ccCHHHHHHHHHhccCCcccceEEEEEeccceeeeccccceeeEeee
Confidence 3455579999999999999999999999999 999999998887766655 7888889 6666 455666
Q ss_pred ec
Q 029301 179 PR 180 (195)
Q Consensus 179 ~~ 180 (195)
|.
T Consensus 208 P~ 209 (375)
T COG0750 208 PV 209 (375)
T ss_pred cc
Confidence 63
No 45
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=97.08 E-value=0.00059 Score=62.22 Aligned_cols=56 Identities=29% Similarity=0.348 Sum_probs=43.6
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc---HHHHHHHHhhCCCCeEEEEEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL---LERLAAEGRKNQGNAVPVVIM 167 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~---~~~l~~~l~~~~g~~v~l~V~ 167 (195)
.+.+|.+|.++|||++-||+.||.|++||.++ +.+ -+.+..+|.-.+|+.++|.-.
T Consensus 429 VGIFVaGvqegspA~~eGlqEGDQIL~VN~vd--F~nl~REeAVlfLL~lPkGEevtilaQ 487 (1027)
T KOG3580|consen 429 VGIFVAGVQEGSPAEQEGLQEGDQILKVNTVD--FRNLVREEAVLFLLELPKGEEVTILAQ 487 (1027)
T ss_pred eeEEEeecccCCchhhccccccceeEEecccc--chhhhHHHHHHHHhcCCCCcEEeehhh
Confidence 46789999999999999999999999999999 544 333444444467888877544
No 46
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=96.91 E-value=0.0017 Score=60.23 Aligned_cols=60 Identities=23% Similarity=0.341 Sum_probs=46.9
Q ss_pred cCCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEE
Q 029301 108 RRPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR 168 (195)
Q Consensus 108 ~~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R 168 (195)
..|..-|..|.+||||++-| |++||.|++|||+.+--.+..++..+|+. .|-+|+|+|.-
T Consensus 776 ~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKd-aGlsVtLtIip 836 (984)
T KOG3209|consen 776 NKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKD-AGLSVTLTIIP 836 (984)
T ss_pred cCCCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHh-cCceEEEEEcC
Confidence 34556688999999999976 99999999999999222346788888876 46688888764
No 47
>PF12812 PDZ_1: PDZ-like domain
Probab=96.69 E-value=0.0071 Score=41.26 Aligned_cols=45 Identities=16% Similarity=0.094 Sum_probs=39.1
Q ss_pred eEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCC
Q 029301 112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQ 158 (195)
Q Consensus 112 ~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~ 158 (195)
.++.....++++..-|+..|.+|.+||+++ +.++++|.+.+++-+
T Consensus 32 gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kp--t~~Ld~f~~vvk~ip 76 (78)
T PF12812_consen 32 GVYVAVSGGSLAFAGGISKGFIITSVNGKP--TPDLDDFIKVVKKIP 76 (78)
T ss_pred EEEEEecCCChhhhCCCCCCeEEEeECCcC--CcCHHHHHHHHHhCC
Confidence 555577889999877799999999999999 999999999988644
No 48
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=96.64 E-value=0.0054 Score=56.87 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=45.6
Q ss_pred eEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEE
Q 029301 112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR 168 (195)
Q Consensus 112 ~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R 168 (195)
+.|-.|.+|+||.++.|++||++++|||.+ +.+.+++.+.++...+. +.+.+.|
T Consensus 400 v~v~tv~~ns~a~k~~~~~gdvlvai~~~p--i~s~~q~~~~~~s~~~~-~~~l~~~ 453 (1051)
T KOG3532|consen 400 VKVCTVEDNSLADKAAFKPGDVLVAINNVP--IRSERQATRFLQSTTGD-LTVLVER 453 (1051)
T ss_pred EEEEEecCCChhhHhcCCCcceEEEecCcc--chhHHHHHHHHHhcccc-eEEEEee
Confidence 567899999999999999999999999999 99999999999876553 4444443
No 49
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.12 E-value=0.0063 Score=56.53 Aligned_cols=56 Identities=21% Similarity=0.261 Sum_probs=42.1
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHH--HHHHHHhhCCCCeEEEEEEEC
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLE--RLAAEGRKNQGNAVPVVIMRQ 169 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~--~l~~~l~~~~g~~v~l~V~R~ 169 (195)
-+.+|.+|.|+|.|+.+||+.||.|++|||+. +.++. ...++|.++ ..++++|..+
T Consensus 562 fgifV~~V~pgskAa~~GlKRgDqilEVNgQn--fenis~~KA~eiLrnn--thLtltvKtN 619 (1283)
T KOG3542|consen 562 FGIFVAEVFPGSKAAREGLKRGDQILEVNGQN--FENISAKKAEEILRNN--THLTLTVKTN 619 (1283)
T ss_pred ceeEEeeecCCchHHHhhhhhhhhhhhccccc--hhhhhHHHHHHHhcCC--ceEEEEEecc
Confidence 35789999999999999999999999999999 55543 333455443 4566666543
No 50
>KOG3550 consensus Receptor targeting protein Lin-7 [Extracellular structures]
Probab=96.10 E-value=0.022 Score=43.57 Aligned_cols=55 Identities=25% Similarity=0.320 Sum_probs=42.5
Q ss_pred eEEEEEcCCChhhhc-CCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEE
Q 029301 112 AVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM 167 (195)
Q Consensus 112 ~~V~~V~~~SpA~~a-GL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~ 167 (195)
.+|..+.||+.|..- ||+.||.++++||....-...+...++++...| .+.+.|+
T Consensus 117 iyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~g-svklvvr 172 (207)
T KOG3550|consen 117 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVG-SVKLVVR 172 (207)
T ss_pred eEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcC-cEEEEEe
Confidence 789999999999875 899999999999998223346667777777655 5666553
No 51
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=96.05 E-value=0.01 Score=54.40 Aligned_cols=68 Identities=24% Similarity=0.293 Sum_probs=51.6
Q ss_pred eEEEEEcCCChhhh-cCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 029301 112 AVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR 180 (195)
Q Consensus 112 ~~V~~V~~~SpA~~-aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~ 180 (195)
.+|.++...+-|++ -+|+.||+|++|||......++.|...+|....| .+.+.|+|+....-+.+++.
T Consensus 221 IFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~G-KL~lvVlRD~~qtLiNiP~l 289 (1027)
T KOG3580|consen 221 IFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRG-KLQLVVLRDSQQTLINIPSL 289 (1027)
T ss_pred hhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccC-ceEEEEEecCCceeeecCCC
Confidence 45666666666655 5799999999999988334568888888888776 68899999877666666553
No 52
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=95.85 E-value=0.028 Score=47.63 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=44.2
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM 167 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~ 167 (195)
|..+|..|..++||++-| ++.||.|++|||....-.+-.++.+.++...+ ++.+.+-
T Consensus 30 PClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~-eV~IhyN 87 (429)
T KOG3651|consen 30 PCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLN-EVKIHYN 87 (429)
T ss_pred CeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhcc-ceEEEeh
Confidence 778999999999999886 89999999999999323345677777776554 5666653
No 53
>KOG3552 consensus FERM domain protein FRM-8 [General function prediction only]
Probab=95.73 E-value=0.017 Score=55.27 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=45.0
Q ss_pred eEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEE
Q 029301 112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR 168 (195)
Q Consensus 112 ~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R 168 (195)
++|..|.+|+|+... |++||.|+.|||.++.-..|+.+.++++..+ ..|.++|.+
T Consensus 77 viVr~VT~GGps~GK-L~PGDQIl~vN~Epv~daprervIdlvRace-~sv~ltV~q 131 (1298)
T KOG3552|consen 77 VIVRFVTEGGPSIGK-LQPGDQILAVNGEPVKDAPRERVIDLVRACE-SSVNLTVCQ 131 (1298)
T ss_pred eEEEEecCCCCcccc-ccCCCeEEEecCcccccccHHHHHHHHHHHh-hhcceEEec
Confidence 678899999999876 9999999999999933345899999988754 357777766
No 54
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=95.65 E-value=0.032 Score=52.19 Aligned_cols=61 Identities=21% Similarity=0.328 Sum_probs=48.4
Q ss_pred CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEEC
Q 029301 109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQ 169 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~ 169 (195)
-.|..|.+|.+++||++-| |+.||+|+.|||..+--.+..++.+.++. ..|..+.|++.|+
T Consensus 370 DefLqVKsvl~DGPAa~dGkle~GDviV~INg~cvlGhTHAqaV~~fqaiPvg~~V~L~lcRg 432 (984)
T KOG3209|consen 370 DEFLQVKSVLKDGPAAQDGKLETGDVIVHINGECVLGHTHAQAVKRFQAIPVGQSVDLVLCRG 432 (984)
T ss_pred CceeeeeecccCCchhhcCccccCcEEEEECCceeccccHHHHHHHhhccccCCeeeEEEecC
Confidence 3467899999999999987 79999999999998222345666677765 4589999999885
No 55
>KOG3605 consensus Beta amyloid precursor-binding protein [General function prediction only]
Probab=95.32 E-value=0.032 Score=51.63 Aligned_cols=61 Identities=26% Similarity=0.360 Sum_probs=43.9
Q ss_pred cCCceEEEEEcCCChhhhcC-CCCCCEEEEECCee-CCCCcHHHHHHHHhhCCCC-eEEEEEEEC
Q 029301 108 RRPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVE-AGDNLLERLAAEGRKNQGN-AVPVVIMRQ 169 (195)
Q Consensus 108 ~~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~-~~v~~~~~l~~~l~~~~g~-~v~l~V~R~ 169 (195)
..|.++|.....++||++.| |-.||.|++|||.. +.. -+..-+.+|++.+++ .|+++|.+.
T Consensus 671 mLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGL-PLstcQs~Ik~~KnQT~VkltiV~c 734 (829)
T KOG3605|consen 671 ILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGL-PLSTCQSIIKGLKNQTAVKLNIVSC 734 (829)
T ss_pred cchHHHHHhcccCChhhhcCCccccceeEeecCceeccc-cHHHHHHHHhcccccceEEEEEecC
Confidence 34777788888999999987 89999999999998 211 245556677764443 456665554
No 56
>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]
Probab=93.80 E-value=0.12 Score=50.57 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=35.7
Q ss_pred EEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhh
Q 029301 113 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRK 156 (195)
Q Consensus 113 ~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~ 156 (195)
.|..|.++|||..||+++||.|+.+||.. +. ...++.+++.+
T Consensus 661 ~v~sv~egsPA~~agls~~DlIthvnge~--v~gl~H~ev~~Lll~ 704 (1205)
T KOG0606|consen 661 SVGSVEEGSPAFEAGLSAGDLITHVNGEP--VHGLVHTEVMELLLK 704 (1205)
T ss_pred eeeeecCCCCccccCCCccceeEeccCcc--cchhhHHHHHHHHHh
Confidence 47889999999999999999999999999 54 46677776654
No 57
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]
Probab=92.94 E-value=0.32 Score=40.81 Aligned_cols=59 Identities=19% Similarity=0.317 Sum_probs=47.5
Q ss_pred cCCceEEEEEcCCChhhhcCC-CCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEE
Q 029301 108 RRPFAVIDEITDASPAAEDGL-QLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM 167 (195)
Q Consensus 108 ~~~~~~V~~V~~~SpA~~aGL-~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~ 167 (195)
..|+.+|....||+-|+..|| ...|.|++|||+...-++++++...+..+. ..+.++|+
T Consensus 192 kvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANs-hNLIiTVk 251 (358)
T KOG3606|consen 192 KVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANS-HNLIITVK 251 (358)
T ss_pred ccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcc-cceEEEec
Confidence 468999999999999999997 569999999999944568999988776543 34566664
No 58
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=91.82 E-value=0.34 Score=47.12 Aligned_cols=61 Identities=30% Similarity=0.397 Sum_probs=46.5
Q ss_pred cCCceEEEEEcCCChhhhcC-CCCCCEEEEECCee-CCCCcHHHHHHHHhhCCCCeEEEEEEECC
Q 029301 108 RRPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVE-AGDNLLERLAAEGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 108 ~~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~-~~v~~~~~l~~~l~~~~g~~v~l~V~R~g 170 (195)
...+.+|.+|.+|++|..-| |++||.+++|||.. +.+ +-+...+++. ..|..|.+.|...|
T Consensus 958 ~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGi-sQErAA~lmt-rtg~vV~leVaKqg 1020 (1629)
T KOG1892|consen 958 RKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGI-SQERAARLMT-RTGNVVHLEVAKQG 1020 (1629)
T ss_pred cccceEEEEeccCCccccccccccCceeeeecCcccccc-cHHHHHHHHh-ccCCeEEEehhhhh
Confidence 45789999999999998776 89999999999999 333 3445555554 45678888887544
No 59
>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only]
Probab=91.00 E-value=1 Score=42.51 Aligned_cols=69 Identities=17% Similarity=0.077 Sum_probs=55.8
Q ss_pred CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCC-CCeEEEEEE-ECCEEEEEEEEec
Q 029301 109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQ-GNAVPVVIM-RQGGLINLAVTPR 180 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~-g~~v~l~V~-R~g~~~~~~l~~~ 180 (195)
..+++|.....+|||-+ +|++--.|++|||.. ..++++|...+...+ +.-+.+... ++|-..-+++.+.
T Consensus 861 p~gvyvt~rg~gspalq-~l~aa~fitavng~~--t~~lddf~~~~~~ipdnsyv~v~~mtfd~vp~~~s~k~n 931 (955)
T KOG1421|consen 861 PEGVYVTSRGYGSPALQ-MLRAAHFITAVNGHD--TNTLDDFYHMLLEIPDNSYVQVKQMTFDGVPSIVSVKPN 931 (955)
T ss_pred CCceEEeecccCChhHh-hcchheeEEEecccc--cCcHHHHHHHHhhCCCCceEEEEEeccCCCceEEEeccC
Confidence 36889999999999999 899999999999999 999999999888754 444555433 5777777777664
No 60
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=90.40 E-value=0.59 Score=42.56 Aligned_cols=56 Identities=23% Similarity=0.419 Sum_probs=45.2
Q ss_pred ceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEE
Q 029301 111 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM 167 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~ 167 (195)
.++|..+..|+.+.+.| |+.||.|..+||....-.+..++...+.+..| ++++.+.
T Consensus 147 ~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G-~itfkii 203 (542)
T KOG0609|consen 147 KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRG-SITFKII 203 (542)
T ss_pred ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCC-cEEEEEc
Confidence 47788889999999888 58999999999999434568899999988665 6777664
No 61
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=90.08 E-value=0.56 Score=40.71 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=44.2
Q ss_pred eEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEE
Q 029301 112 AVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM 167 (195)
Q Consensus 112 ~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~ 167 (195)
++|..+.++-.|+..| |=.||-|++|||....--..+++..+|++ .|+.++++|.
T Consensus 82 vviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRN-AGdeVtlTV~ 137 (505)
T KOG3549|consen 82 VVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRN-AGDEVTLTVK 137 (505)
T ss_pred EEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHh-cCCEEEEEeH
Confidence 6788999999999888 46899999999998222347888888876 5678888885
No 62
>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]
Probab=89.45 E-value=0.93 Score=41.14 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=40.4
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCee-CCCCcHHHHHHHHhh--CCCCeEEEEEEEC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVE-AGDNLLERLAAEGRK--NQGNAVPVVIMRQ 169 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~-~~v~~~~~l~~~l~~--~~g~~v~l~V~R~ 169 (195)
-+.+|.++.+++.-+.-| |.+||.|++||... .+..+- +....|+. +...+++++|-..
T Consensus 277 ggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd-~AVrvLREaV~~~gPi~ltvAk~ 339 (626)
T KOG3571|consen 277 GGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSND-QAVRVLREAVSRPGPIKLTVAKC 339 (626)
T ss_pred CceEEeeeccCceeeccCccCccceEEEeeecchhhcCch-HHHHHHHHHhccCCCeEEEEeec
Confidence 568899999987665554 99999999999998 333333 34444443 2223688888653
No 63
>KOG2921 consensus Intramembrane metalloprotease (sterol-regulatory element-binding protein (SREBP) protease) [Posttranslational modification, protein turnover, chaperones]
Probab=88.32 E-value=0.84 Score=40.28 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=34.2
Q ss_pred CceEEEEEcCCChhhh-cCCCCCCEEEEECCeeCCCCcHHHHHHHHh
Q 029301 110 PFAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGDNLLERLAAEGR 155 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~-aGL~~GD~I~~ing~~~~v~~~~~l~~~l~ 155 (195)
.++.|.+|...||+.. -||.+||+|+++||-+ +.+.+|-.+.++
T Consensus 220 ~gV~Vtev~~~Spl~gprGL~vgdvitsldgcp--V~~v~dW~ecl~ 264 (484)
T KOG2921|consen 220 EGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCP--VHKVSDWLECLA 264 (484)
T ss_pred ceEEEEeccccCCCcCcccCCccceEEecCCcc--cCCHHHHHHHHH
Confidence 4578999999999854 3999999999999999 666555444444
No 64
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=86.36 E-value=0.81 Score=40.27 Aligned_cols=55 Identities=22% Similarity=0.327 Sum_probs=40.9
Q ss_pred eEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEE
Q 029301 112 AVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM 167 (195)
Q Consensus 112 ~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~ 167 (195)
..|..+.+|-.|.++| |..||.|++|||.+..-.+.++..+.|+. .|+.+.+.|+
T Consensus 112 IlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKr-aGkeV~levK 167 (506)
T KOG3551|consen 112 ILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKR-AGKEVLLEVK 167 (506)
T ss_pred eehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHh-hCceeeeeee
Confidence 5678888998898875 89999999999998223356666677754 5677766654
No 65
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=83.48 E-value=1.6 Score=34.58 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=26.9
Q ss_pred cCCceEEEEEcCCChhhhcCCCCCCEEEEEC
Q 029301 108 RRPFAVIDEITDASPAAEDGLQLGDQVLKFG 138 (195)
Q Consensus 108 ~~~~~~V~~V~~~SpA~~aGL~~GD~I~~in 138 (195)
.-....|..|..||||+++|+.-|+.|+++-
T Consensus 120 e~~~~~Vd~v~fgS~A~~~g~d~d~~I~~v~ 150 (183)
T PF11874_consen 120 EGGKVIVDEVEFGSPAEKAGIDFDWEITEVE 150 (183)
T ss_pred eCCEEEEEecCCCCHHHHcCCCCCcEEEEEE
Confidence 3355789999999999999999999999874
No 66
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=79.16 E-value=2.7 Score=28.66 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029301 7 KAEIMSLMEKRSALEADMNAIID 29 (195)
Q Consensus 7 ~~~~~~l~~~k~~iE~el~~~~~ 29 (195)
|.+|.+|.++|..||++|..+..
T Consensus 1 k~~L~~l~~~k~~Le~~L~~lE~ 23 (80)
T PF09340_consen 1 KKELKELLQKKKKLEKDLAALEK 23 (80)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999988764
No 67
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=75.37 E-value=7.2 Score=33.66 Aligned_cols=78 Identities=13% Similarity=0.000 Sum_probs=51.6
Q ss_pred EEEE-cCCChhhhcCCCCC-CEEE-EECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEE--CCEEEEEEEEec-cCCCcee
Q 029301 114 IDEI-TDASPAAEDGLQLG-DQVL-KFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR--QGGLINLAVTPR-PWQGRGL 187 (195)
Q Consensus 114 V~~V-~~~SpA~~aGL~~G-D~I~-~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R--~g~~~~~~l~~~-~~~~~~~ 187 (195)
|.+| .+++|++.|+|-+. |.|+ .=+|..+.+ ...++..++....+-++.+.+.. ++..+.+++.+. .|+..|.
T Consensus 190 ilnV~I~d~p~a~a~l~PdEdyi~gs~dg~~~~~-ge~~l~Dv~es~~n~pl~Ly~yn~i~d~~R~~T~~~~~h~g~~g~ 268 (417)
T COG5233 190 ILNVSIQDKPPAYALLSPDEDYIDGSSDGQPLEI-GELDLEDVNESPVNLPLSLYYYNPIDDQERAKTERDGVHKGIVGI 268 (417)
T ss_pred eeeeecCCCchhhcccCCcccccccCCCcccccc-hhhHHHHHhhcccCCceEEEEEecccccccceeeccCccccCccc
Confidence 4566 78899999999884 4443 335555111 23455556666667778888775 456677777766 6888889
Q ss_pred eeEEE
Q 029301 188 LGCHF 192 (195)
Q Consensus 188 lGi~l 192 (195)
|||..
T Consensus 269 lgc~v 273 (417)
T COG5233 269 LGCQV 273 (417)
T ss_pred ccccc
Confidence 99864
No 68
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=71.87 E-value=4.1 Score=35.09 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=26.3
Q ss_pred EEEEEcCCChhhhcCCCCCCEEEEECCee
Q 029301 113 VIDEITDASPAAEDGLQLGDQVLKFGTVE 141 (195)
Q Consensus 113 ~V~~V~~~SpA~~aGL~~GD~I~~ing~~ 141 (195)
.+..|.+.|||+++|.-.||.|+.||+-+
T Consensus 66 ~~lrv~~~~~~e~~~~~~~dyilg~n~Dp 94 (417)
T COG5233 66 EVLRVNPESPAEKAGMVVGDYILGINEDP 94 (417)
T ss_pred hheeccccChhHhhccccceeEEeecCCc
Confidence 45678899999999999999999999877
No 69
>KOG3605 consensus Beta amyloid precursor-binding protein [General function prediction only]
Probab=71.51 E-value=3.8 Score=38.45 Aligned_cols=46 Identities=13% Similarity=0.217 Sum_probs=34.4
Q ss_pred EEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCC
Q 029301 114 IDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQG 159 (195)
Q Consensus 114 V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g 159 (195)
|-+...|+-|++-|+++|-+|++|||+.+-..-.+.+..+|....|
T Consensus 760 ICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVG 805 (829)
T KOG3605|consen 760 ICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVG 805 (829)
T ss_pred eehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhhh
Confidence 4456678999999999999999999998111235667777766544
No 70
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=68.35 E-value=16 Score=23.71 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 029301 6 LKAEIMSLMEKRSALEADMNAIIDRLSQS 34 (195)
Q Consensus 6 ~~~~~~~l~~~k~~iE~el~~~~~~L~~~ 34 (195)
+..++.+|.++...++.+|+.+..-|..|
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~ 30 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNE 30 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 45789999999999999999999999664
No 71
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.16 E-value=16 Score=27.03 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029301 4 TNLKAEIMSLMEKRSALEADMNAIID 29 (195)
Q Consensus 4 ~~~~~~~~~l~~~k~~iE~el~~~~~ 29 (195)
+++|.||.+|.++|.++|..|.-|..
T Consensus 13 e~~kaEL~elikkrqe~eetl~nLe~ 38 (135)
T KOG3856|consen 13 EDTKAELAELIKKRQELEETLANLER 38 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999887764
No 72
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=56.18 E-value=27 Score=31.18 Aligned_cols=47 Identities=26% Similarity=0.455 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC------CCCCCCCCCCCC
Q 029301 4 TNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSG------NLVDSEGFPRTD 53 (195)
Q Consensus 4 ~~~~~~~~~l~~~k~~iE~el~~~~~~L~~~~~~~~~~------~lvd~eG~Pr~d 53 (195)
.++|++-.+|..+|+.||+.|+-. -|+. ..+|..+ .--|.+|||-+|
T Consensus 28 qel~~kkqel~qkkk~i~kkielk--~~ed-sdag~~~eyd~spaawdkd~fpws~ 80 (695)
T KOG0353|consen 28 QELREKKQELIQKKKAIEKKIELK--CLED-SDAGASNEYDRSPAAWDKDDFPWSD 80 (695)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh--hccc-ccccccccccCCccccccCCCCCch
Confidence 367888899999999999998733 3333 2233333 236889999986
No 73
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=54.01 E-value=41 Score=20.24 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRLS 32 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~ 32 (195)
.++.+...|..+++.+-+|+..+...|.
T Consensus 16 ~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 16 SLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5677888888888888888888887774
No 74
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=53.11 E-value=44 Score=22.45 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=25.5
Q ss_pred cchhHHH---HHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301 2 VGTNLKA---EIMSLMEKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 2 ~~~~~~~---~~~~l~~~k~~iE~el~~~~~~L~~ 33 (195)
++.++|. .+.+|.++|+.|-.++.+.+...++
T Consensus 2 a~~~Lr~~ieRiErLEeEk~~i~~dikdVyaEAK~ 36 (74)
T PF10073_consen 2 AAEQLRQFIERIERLEEEKKAISDDIKDVYAEAKG 36 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455554 7788999999999999999998865
No 75
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=51.01 E-value=12 Score=26.48 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=26.5
Q ss_pred HHHHHHHhccCC---CCCCCCCCCCCCCCCCCCCchh
Q 029301 24 MNAIIDRLSQSN---GPGLSGNLVDSEGFPRTDIDIH 57 (195)
Q Consensus 24 l~~~~~~L~~~~---~~~~~~~lvd~eG~Pr~d~dl~ 57 (195)
+.++..+|..-+ .+..=||++-.|..|.+|+|+.
T Consensus 11 lr~~~~~l~~k~gv~~~~vFGS~aRgE~~~~SDIDIL 47 (97)
T COG1669 11 LRKIKPELKEKYGVKRVAVFGSYARGEQKPDSDIDIL 47 (97)
T ss_pred HHHHHHHHHHHhCCceEEEeeeeecCCCCCCCCceeE
Confidence 666777776333 4588899999999999999984
No 76
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.61 E-value=40 Score=22.95 Aligned_cols=26 Identities=15% Similarity=0.297 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301 8 AEIMSLMEKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 8 ~~~~~l~~~k~~iE~el~~~~~~L~~ 33 (195)
+.+.+|.++|+.|-.++...+..+++
T Consensus 21 erIERlEeEk~~i~~dikdvy~eakg 46 (85)
T COG3750 21 ERIERLEEEKKTIADDIKDVYAEAKG 46 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46778889999999999999988854
No 77
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=50.06 E-value=11 Score=35.26 Aligned_cols=39 Identities=23% Similarity=0.167 Sum_probs=31.2
Q ss_pred cCCce-EEEEEcCCChhhhc-CCCCCCEEEEECCeeCCCCcHH
Q 029301 108 RRPFA-VIDEITDASPAAED-GLQLGDQVLKFGTVEAGDNLLE 148 (195)
Q Consensus 108 ~~~~~-~V~~V~~~SpA~~a-GL~~GD~I~~ing~~~~v~~~~ 148 (195)
.+.++ +|.++.++|||... -|..||.|++||+.. +-.|+
T Consensus 222 sydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qt--vVgwq 262 (638)
T KOG1738|consen 222 SYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQT--VVGWQ 262 (638)
T ss_pred ecCCceeccccccCChHHHhhcccCccceeeecccc--cccch
Confidence 34444 56789999999876 489999999999999 77763
No 78
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=46.77 E-value=39 Score=25.95 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~~ 33 (195)
.+++++++|.++|+.+|+.++.|-++|..
T Consensus 58 ~~k~E~krL~~rkk~~e~~~~~Lk~yL~~ 86 (162)
T PF05565_consen 58 AIKAEIKRLQERKKSIENRIDRLKEYLLD 86 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999965
No 79
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=44.75 E-value=18 Score=32.99 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=24.2
Q ss_pred EEEEEcCCChhhhcCCCCCCEEEEECCee
Q 029301 113 VIDEITDASPAAEDGLQLGDQVLKFGTVE 141 (195)
Q Consensus 113 ~V~~V~~~SpA~~aGL~~GD~I~~ing~~ 141 (195)
.|....+|.|.-.| .+|||+|++.||+.
T Consensus 301 ~vl~~~ENm~~g~A-~rPGDVits~~GkT 328 (485)
T COG0260 301 GVLPAVENMPSGNA-YRPGDVITSMNGKT 328 (485)
T ss_pred EEEeeeccCCCCCC-CCCCCeEEecCCcE
Confidence 34566789999888 99999999999998
No 80
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=43.70 E-value=44 Score=16.85 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 029301 16 KRSALEADMNAIIDRL 31 (195)
Q Consensus 16 ~k~~iE~el~~~~~~L 31 (195)
.|+++|++.+.|.+..
T Consensus 2 akk~lEa~~qkLe~e~ 17 (21)
T PF02370_consen 2 AKKQLEADHQKLEAEK 17 (21)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4677777777766543
No 81
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=42.36 E-value=51 Score=25.51 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~~ 33 (195)
.+|++-++|..+||++|..|..+...++.
T Consensus 95 ~~re~E~qLr~rRD~LErrl~~l~~tier 123 (159)
T PF05384_consen 95 MLREREKQLRERRDELERRLRNLEETIER 123 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999987764
No 82
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=39.55 E-value=43 Score=21.32 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029301 6 LKAEIMSLMEKRSALEADMNAI 27 (195)
Q Consensus 6 ~~~~~~~l~~~k~~iE~el~~~ 27 (195)
.|.+++++.++-+++|+|++++
T Consensus 46 ~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4667888888888888888764
No 83
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=39.54 E-value=66 Score=22.40 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029301 6 LKAEIMSLMEKRSALEADMNAIID 29 (195)
Q Consensus 6 ~~~~~~~l~~~k~~iE~el~~~~~ 29 (195)
+++++++|..++..++.+++.+..
T Consensus 75 l~~~l~~l~~~~~~~~~~~~~~~~ 98 (104)
T PF13600_consen 75 LEEELEALEDELAALQDEIQALEA 98 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555443
No 84
>PRK03760 hypothetical protein; Provisional
Probab=38.14 E-value=54 Score=23.89 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=18.9
Q ss_pred CCceEEEEEcCCChhhhcCCCCCCEEE
Q 029301 109 RPFAVIDEITDASPAAEDGLQLGDQVL 135 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~ 135 (195)
.+..+|.++..|. +++.|+++||.|.
T Consensus 88 ~~a~~VLEl~aG~-~~~~gi~~Gd~v~ 113 (117)
T PRK03760 88 KPARYIIEGPVGK-IRVLKVEVGDEIE 113 (117)
T ss_pred ccceEEEEeCCCh-HHHcCCCCCCEEE
Confidence 3455788875554 6678999999983
No 85
>PF13015 PRKCSH_1: Glucosidase II beta subunit-like protein
Probab=37.95 E-value=46 Score=25.54 Aligned_cols=32 Identities=34% Similarity=0.479 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 029301 6 LKAEIMSLMEKRSALEADMNAIIDRLSQSNGP 37 (195)
Q Consensus 6 ~~~~~~~l~~~k~~iE~el~~~~~~L~~~~~~ 37 (195)
++.++.++..+..+|+.+|+.+.+.|+...|.
T Consensus 1 ~~~~~~~~e~~~~~l~~~i~~~~~~l~~dyG~ 32 (154)
T PF13015_consen 1 LEKEIDEAERKLSDLESKIRELEDDLNKDYGP 32 (154)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Confidence 35688999999999999999999999765443
No 86
>PRK13694 hypothetical protein; Provisional
Probab=36.54 E-value=87 Score=21.51 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301 9 EIMSLMEKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 9 ~~~~l~~~k~~iE~el~~~~~~L~~ 33 (195)
.+.+|.++|++|-.++.+.++.-++
T Consensus 20 RIERLEeEkk~i~~dikdVyaEAK~ 44 (83)
T PRK13694 20 RIERLEEEKKTISDDIKDVYAEAKG 44 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777777777777777777654
No 87
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins. This superfamily includes the NT domains of DNA polymerase beta and other family X DNA polymerases, as well as the NT domains of Class I and Class II CCA-adding enzymes, RelA- and SpoT-like ppGpp synthetases and hydrolases, 2'5'-oligoadenylate (2-5A)synthetases, Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), poly (A) polymerases, terminal uridylyl transferases, and Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. The Escherichia coli CCA-adding enzyme belongs to this superfamily but is not included as this enzyme lacks the N-terminal helix conserved in the remainder of the superfamily. In the majority of the Pol beta-like superfamily NTs, two carboxylates, Dx[D/E], together with a third more distal carboxylate coordinate two divalent metal cations that are essential for catalysis. These divalent metal ions are
Probab=34.88 E-value=39 Score=20.35 Aligned_cols=26 Identities=27% Similarity=0.190 Sum_probs=19.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCchhhh
Q 029301 34 SNGPGLSGNLVDSEGFPRTDIDIHLV 59 (195)
Q Consensus 34 ~~~~~~~~~lvd~eG~Pr~d~dl~~v 59 (195)
...+..-|++...+-.|.+|+|+.-+
T Consensus 17 ~~~v~lfGS~arg~~~~~SDIDi~v~ 42 (49)
T cd05397 17 GYEIVVYGSLVRGLLKKSSDIDLACV 42 (49)
T ss_pred CcEEEEECCcCCCCCCCCCCEEEEEE
Confidence 44577888888755578889998654
No 88
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=34.28 E-value=34 Score=31.26 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=23.6
Q ss_pred EEEEcCCChhhhcCCCCCCEEEEECCee
Q 029301 114 IDEITDASPAAEDGLQLGDQVLKFGTVE 141 (195)
Q Consensus 114 V~~V~~~SpA~~aGL~~GD~I~~ing~~ 141 (195)
|....+|.|...| .+|||+|++-||+.
T Consensus 303 v~~l~ENm~~~~A-~rPgDVi~~~~GkT 329 (483)
T PRK00913 303 VVAACENMPSGNA-YRPGDVLTSMSGKT 329 (483)
T ss_pred EEEeeccCCCCCC-CCCCCEEEECCCcE
Confidence 3455789999988 99999999999998
No 89
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=34.00 E-value=1.4e+02 Score=20.06 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 029301 4 TNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPG 38 (195)
Q Consensus 4 ~~~~~~~~~l~~~k~~iE~el~~~~~~L~~~~~~~ 38 (195)
++..+.+.+|.++=+.||..++.|..+|... .++
T Consensus 38 ~~d~~~L~~L~~~a~rm~eRI~tLE~ILd~e-~P~ 71 (75)
T TIGR02976 38 TDDQALLQELYAKADRLEERIDTLERILDAE-HPN 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcC
Confidence 4566789999999999999999999999763 344
No 90
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=32.72 E-value=81 Score=20.43 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029301 6 LKAEIMSLMEKRSALEADMNAI 27 (195)
Q Consensus 6 ~~~~~~~l~~~k~~iE~el~~~ 27 (195)
+..++.+|.++.++++.+++.+
T Consensus 29 l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 29 LQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555554
No 91
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=32.71 E-value=93 Score=22.10 Aligned_cols=26 Identities=8% Similarity=0.221 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301 8 AEIMSLMEKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 8 ~~~~~l~~~k~~iE~el~~~~~~L~~ 33 (195)
..-.++...|+.||.||+.|..-|..
T Consensus 8 ~~r~~ae~~~~~ie~ElEeLTasLFe 33 (100)
T PF06428_consen 8 ERREEAEQEKEQIESELEELTASLFE 33 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566888999999999999999965
No 92
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxyla
Probab=32.40 E-value=46 Score=23.37 Aligned_cols=45 Identities=22% Similarity=0.325 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCchhhhhh
Q 029301 17 RSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRS 61 (195)
Q Consensus 17 k~~iE~el~~~~~~L~~~~~~~~~~~lvd~eG~Pr~d~dl~~vr~ 61 (195)
|.++-..|+.+..-+.....+..-|++..--+.|.+|+|++-...
T Consensus 2 r~~i~~~l~~~i~~~~~~~~v~~fGS~~~g~~~~~SDiDl~i~~~ 46 (114)
T cd05402 2 REEVLDRLQELIKEWFPGAKLYPFGSYVTGLGLPGSDIDLCLLGP 46 (114)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEecccccCCCCCCCCeeEEEEeC
Confidence 445555555555544322346788899887778999999865544
No 93
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.29 E-value=48 Score=28.05 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=40.1
Q ss_pred eEEEEEcCCChhhhc-CCCCCCEEEEECCeeCCCCc--HHHHHHHHhh-CCCCeEEEEEE
Q 029301 112 AVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDNL--LERLAAEGRK-NQGNAVPVVIM 167 (195)
Q Consensus 112 ~~V~~V~~~SpA~~a-GL~~GD~I~~ing~~~~v~~--~~~l~~~l~~-~~g~~v~l~V~ 167 (195)
+.|..+.++|--... -+++||.|-+|||+. +-. .-++.+.|+. ..|++.++.+.
T Consensus 151 AFIKrIkegsvidri~~i~VGd~IEaiNge~--ivG~RHYeVArmLKel~rge~ftlrLi 208 (334)
T KOG3938|consen 151 AFIKRIKEGSVIDRIEAICVGDHIEAINGES--IVGKRHYEVARMLKELPRGETFTLRLI 208 (334)
T ss_pred eeeEeecCCchhhhhhheeHHhHHHhhcCcc--ccchhHHHHHHHHHhcccCCeeEEEee
Confidence 567778888876553 489999999999999 554 4467777776 45777777654
No 94
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=32.29 E-value=37 Score=30.88 Aligned_cols=27 Identities=7% Similarity=0.099 Sum_probs=23.7
Q ss_pred EEEEcCCChhhhcCCCCCCEEEEECCee
Q 029301 114 IDEITDASPAAEDGLQLGDQVLKFGTVE 141 (195)
Q Consensus 114 V~~V~~~SpA~~aGL~~GD~I~~ing~~ 141 (195)
|....+|.|...| .+|||+|.+-||+.
T Consensus 289 i~~~~EN~is~~A-~rPgDVi~s~~GkT 315 (468)
T cd00433 289 VLPLAENMISGNA-YRPGDVITSRSGKT 315 (468)
T ss_pred EEEeeecCCCCCC-CCCCCEeEeCCCcE
Confidence 4456789999988 99999999999998
No 95
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=32.06 E-value=1e+02 Score=21.68 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~~ 33 (195)
.+++++..|..++..+|.++.++..+++.
T Consensus 10 ~l~~~~~~l~~~~~~l~~~~~E~~~v~~E 38 (105)
T cd00632 10 QLQQQLQAYIVQRQKVEAQLNENKKALEE 38 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999888765
No 96
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=31.96 E-value=95 Score=22.86 Aligned_cols=44 Identities=16% Similarity=0.272 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCC
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEG 48 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~~~~~~~~~~~lvd~eG 48 (195)
.+.+.+..++-+|..+|.+|++.-..|+.-...+-++|.-..-|
T Consensus 17 qLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG 60 (119)
T COG1382 17 QLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVG 60 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhh
Confidence 45678889999999999999999999977544444444433334
No 97
>PRK05015 aminopeptidase B; Provisional
Probab=30.81 E-value=45 Score=29.94 Aligned_cols=27 Identities=11% Similarity=0.056 Sum_probs=23.7
Q ss_pred EEEEcCCChhhhcCCCCCCEEEEECCee
Q 029301 114 IDEITDASPAAEDGLQLGDQVLKFGTVE 141 (195)
Q Consensus 114 V~~V~~~SpA~~aGL~~GD~I~~ing~~ 141 (195)
|.-..+|.+...| .++||+|+.-||+.
T Consensus 240 il~~aENmisg~A-~kpgDVIt~~nGkT 266 (424)
T PRK05015 240 FLCCAENLISGNA-FKLGDIITYRNGKT 266 (424)
T ss_pred EEEecccCCCCCC-CCCCCEEEecCCcE
Confidence 4456789999888 99999999999998
No 98
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=28.46 E-value=62 Score=27.14 Aligned_cols=20 Identities=15% Similarity=0.405 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029301 9 EIMSLMEKRSALEADMNAII 28 (195)
Q Consensus 9 ~~~~l~~~k~~iE~el~~~~ 28 (195)
.+++|.++|+.++.+|++|.
T Consensus 5 ~L~eL~qrk~~Lq~eIe~Le 24 (283)
T PF11285_consen 5 ALKELEQRKQALQIEIEQLE 24 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555443
No 99
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=28.31 E-value=1.3e+02 Score=20.51 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRL 31 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L 31 (195)
.+..++.+|.++++.+++++..+..-|
T Consensus 4 ~l~~~~~~L~~~~~~l~~~i~~~~~~l 30 (83)
T PF07061_consen 4 SLEAEIQELKEQIEQLEKEISELEAEL 30 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 567788999999999999998888766
No 100
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=28.24 E-value=1.6e+02 Score=20.00 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=15.6
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHh
Q 029301 6 LKAEIMSLME-------KRSALEADMNAIIDRL 31 (195)
Q Consensus 6 ~~~~~~~l~~-------~k~~iE~el~~~~~~L 31 (195)
+|.++..+.. .+++.|..++...+.+
T Consensus 9 ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em 41 (79)
T PF08581_consen 9 IRQEFENLSQEANSYKHQKDEYEHKINSQIQEM 41 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4555555555 6666666666665544
No 101
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=27.74 E-value=1.2e+02 Score=20.03 Aligned_cols=26 Identities=12% Similarity=0.243 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301 8 AEIMSLMEKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 8 ~~~~~l~~~k~~iE~el~~~~~~L~~ 33 (195)
.+|.+|+++|+.+...|+.....+..
T Consensus 6 ~~L~~Lv~~R~~~~~kLE~a~~~~~~ 31 (85)
T PF14703_consen 6 SKLEKLVEEREKAVRKLESAESKYLK 31 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999998887754
No 102
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=27.64 E-value=48 Score=29.62 Aligned_cols=30 Identities=33% Similarity=0.411 Sum_probs=26.6
Q ss_pred eEEEEEcCCChhhhcCCCCCCEEEEEC-Cee
Q 029301 112 AVIDEITDASPAAEDGLQLGDQVLKFG-TVE 141 (195)
Q Consensus 112 ~~V~~V~~~SpA~~aGL~~GD~I~~in-g~~ 141 (195)
..|..+.++|.++..|+.+||.+..|| +..
T Consensus 3 ~~i~~v~~~~~~d~~Gfe~~~~l~~Vn~~~~ 33 (414)
T COG1625 3 AKISKVGGISGADCDGFEEGDYLLKVNPGFG 33 (414)
T ss_pred cceeeccCCCcccccCccccceeeecCCCCC
Confidence 356778999999999999999999999 766
No 103
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=27.63 E-value=2e+02 Score=19.36 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 029301 4 TNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGL 39 (195)
Q Consensus 4 ~~~~~~~~~l~~~k~~iE~el~~~~~~L~~~~~~~~ 39 (195)
++-.+.+.+|.++=+.||..++.|..+|.. .+++.
T Consensus 38 ~~d~~~L~~L~~~a~rm~eRI~tLE~ILda-e~P~w 72 (75)
T PF06667_consen 38 EEDEQRLQELYEQAERMEERIETLERILDA-EHPNW 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCc
Confidence 345678999999999999999999999976 34443
No 104
>PF14275 DUF4362: Domain of unknown function (DUF4362)
Probab=27.53 E-value=2.3e+02 Score=20.07 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=17.8
Q ss_pred CCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEE
Q 029301 129 QLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPV 164 (195)
Q Consensus 129 ~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l 164 (195)
+.||+|.+-+... |...+++|..-+.......+.|
T Consensus 1 ~~~DVi~~~~~i~-Nl~kl~~Fi~nv~~~k~d~IrI 35 (98)
T PF14275_consen 1 KNNDVINKHGEIE-NLDKLDQFIENVEQGKPDKIRI 35 (98)
T ss_pred CCCCEEEeCCeEE-eHHHHHHHHHHHhcCCCCEEEE
Confidence 4689888833322 3444555555554333333443
No 105
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=27.39 E-value=1.6e+02 Score=20.67 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301 4 TNLKAEIMSLMEKRSALEADMNAIIDRLS 32 (195)
Q Consensus 4 ~~~~~~~~~l~~~k~~iE~el~~~~~~L~ 32 (195)
+.+++++.+|.++++.+|..-.+=+..|.
T Consensus 5 s~I~~eIekLqe~lk~~e~keaERigr~A 33 (92)
T PF07820_consen 5 SKIREEIEKLQEQLKQAETKEAERIGRIA 33 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999988877776554
No 106
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=27.28 E-value=1.3e+02 Score=22.15 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRLS 32 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~ 32 (195)
.+++++.+|.+.|+.+..||-.+....+
T Consensus 34 ~l~~el~~l~~~r~~l~~Eiv~l~~~~e 61 (120)
T PF12325_consen 34 SLQEELARLEAERDELREEIVKLMEENE 61 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999888776553
No 107
>PF02643 DUF192: Uncharacterized ACR, COG1430; InterPro: IPR003795 This entry describes proteins of unknown function.; PDB: 3M7A_B 3PJY_B.
Probab=27.17 E-value=42 Score=23.92 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=16.2
Q ss_pred CCceEEEEEcCCChhhhcCCCCCCEEE
Q 029301 109 RPFAVIDEITDASPAAEDGLQLGDQVL 135 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~ 135 (195)
.+.-+|.++.+|. +++.||++||.|.
T Consensus 80 ~~a~~vLE~~aG~-~~~~~i~~Gd~v~ 105 (108)
T PF02643_consen 80 KPARYVLELPAGW-FEKLGIKVGDRVR 105 (108)
T ss_dssp CEECEEEEEETTH-HHHHT--TT-EEE
T ss_pred CccCEEEEcCCCc-hhhcCCCCCCEEE
Confidence 3445688887766 5567899999984
No 108
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.28 E-value=1e+02 Score=22.08 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=23.2
Q ss_pred hhhcCCCCCCEEEEECCee----CCCCcHHHHHHHHhh
Q 029301 123 AAEDGLQLGDQVLKFGTVE----AGDNLLERLAAEGRK 156 (195)
Q Consensus 123 A~~aGL~~GD~I~~ing~~----~~v~~~~~l~~~l~~ 156 (195)
+...++++||+|+-=++.- ..+...+.|.+.+..
T Consensus 29 ~krr~ik~GD~IiF~~~~l~v~V~~vr~Y~tF~~mlre 66 (111)
T COG4043 29 PKRRQIKPGDKIIFNGDKLKVEVIDVRVYDTFEEMLRE 66 (111)
T ss_pred HhhcCCCCCCEEEEcCCeeEEEEEEEeehhHHHHHHHh
Confidence 4567899999997443332 346677777777765
No 109
>PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The 2 zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3KZW_L 3KQX_C 3KQZ_L 3KR4_I 3KR5_J 3T8W_C 3H8F_D 3H8G_A 3H8E_B 3IJ3_A ....
Probab=26.01 E-value=33 Score=29.51 Aligned_cols=27 Identities=7% Similarity=0.158 Sum_probs=19.7
Q ss_pred EEEEcCCChhhhcCCCCCCEEEEECCee
Q 029301 114 IDEITDASPAAEDGLQLGDQVLKFGTVE 141 (195)
Q Consensus 114 V~~V~~~SpA~~aGL~~GD~I~~ing~~ 141 (195)
|.-..+|+|...+ .++||+|.+.||+.
T Consensus 134 ~l~~~EN~i~~~a-~~pgDVi~s~~GkT 160 (311)
T PF00883_consen 134 VLPLAENMISGNA-YRPGDVITSMNGKT 160 (311)
T ss_dssp EEEEEEE--STTS-TTTTEEEE-TTS-E
T ss_pred EEEcccccCCCCC-CCCCCEEEeCCCCE
Confidence 3456679999888 99999999999998
No 110
>PF05708 DUF830: Orthopoxvirus protein of unknown function (DUF830); PDB: 2IF6_B 3KW0_C.
Probab=25.64 E-value=2.8e+02 Score=20.44 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=18.9
Q ss_pred CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 128 LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 128 L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
|++||+|+.-+... +..+...+....=.-+-+.+..++.
T Consensus 2 l~~GDIil~~~~~~-----~s~~i~~~t~~~~~HvgI~~~~~~~ 40 (158)
T PF05708_consen 2 LQTGDIILTRGKSS-----LSKAIRPVTSSPYSHVGIVIGDEGQ 40 (158)
T ss_dssp --TT-EEEEEE-SC-----CHHHHHHHHTSS--EEEEEEEETTE
T ss_pred CCCeeEEEEECCch-----HHHHHHHHhCCCCCEEEEEEecCCC
Confidence 79999999887633 3444444444332345555555544
No 111
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=24.80 E-value=1.2e+02 Score=21.51 Aligned_cols=22 Identities=14% Similarity=0.221 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029301 6 LKAEIMSLMEKRSALEADMNAI 27 (195)
Q Consensus 6 ~~~~~~~l~~~k~~iE~el~~~ 27 (195)
+++++.+|.++..+|+.|++.+
T Consensus 39 ~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 39 QQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555556666666666555
No 112
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=24.74 E-value=1.1e+02 Score=25.64 Aligned_cols=29 Identities=21% Similarity=0.476 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~~ 33 (195)
++|+++.+.+.--.+||++|+...+-|+.
T Consensus 31 ~~reEl~EFQegSrE~EaelesqL~q~et 59 (333)
T KOG1853|consen 31 QMREELNEFQEGSREIEAELESQLDQLET 59 (333)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 57889999999889999999988887765
No 113
>PRK09458 pspB phage shock protein B; Provisional
Probab=24.31 E-value=2.3e+02 Score=19.08 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGL 39 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~~~~~~~~ 39 (195)
+-.+.+.+|-++=+.|+..|+.+..+|.. ..++.
T Consensus 39 ~d~~~L~~L~~~A~rm~~RI~tLE~ILDa-e~P~W 72 (75)
T PRK09458 39 EEQQRLAQLTEKAERMRERIQALEAILDA-EHPNW 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCc
Confidence 44567889999999999999999999976 44544
No 114
>TIGR03741 PRTRC_E PRTRC system protein E. A novel genetic system characterized by six or seven major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family averages about 150 amino acids in length, but the last third contains low-complexity sequence that complicates sequence comparisons. This model does not include the low-complexity region.
Probab=24.19 E-value=2.2e+02 Score=20.41 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=21.7
Q ss_pred HHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 029301 148 ERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR 180 (195)
Q Consensus 148 ~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~ 180 (195)
+.+...+... ..+.|.+...|....+.+.|.
T Consensus 3 ~~i~~l~~~~--~~l~l~i~~~~d~l~V~v~P~ 33 (104)
T TIGR03741 3 QALHPLLTAA--TKLTVSLTAVGDKLTVTVTPT 33 (104)
T ss_pred HHHHHHHHhC--CceEEEEEcCCCEEEEEEeec
Confidence 4455555443 338888888888889999886
No 115
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=24.09 E-value=2.6e+02 Score=23.96 Aligned_cols=64 Identities=17% Similarity=0.299 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCCCCCCCCCCCCCCCCCCCCchhhhh-hHhhHhHhh
Q 029301 6 LKAEIMSLMEKRSALEADMNAIIDRLSQ-------SNGPGLSGNLVDSEGFPRTDIDIHLVR-SERRRLAGD 69 (195)
Q Consensus 6 ~~~~~~~l~~~k~~iE~el~~~~~~L~~-------~~~~~~~~~lvd~eG~Pr~d~dl~~vr-~~r~~i~~l 69 (195)
+--.+++|...|++|-.|+..+..-|+. +......+.|-+.+|+=-.|+.+..+. -+-..|..|
T Consensus 217 LDvRLkKl~~eke~L~~qv~klk~qLee~~~~~~~~~~~~~~~~l~~~~~~En~d~~~~d~qrdanrqisd~ 288 (302)
T PF09738_consen 217 LDVRLKKLADEKEELLEQVRKLKLQLEERQSEGRRQKSSSENGVLGDDEDLENTDLHFIDLQRDANRQISDY 288 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccccccccccccccHHHhhhHHHHHHHHH
Confidence 3348999999999999999999999942 223566666666666522455555543 333344444
No 116
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=23.98 E-value=48 Score=24.15 Aligned_cols=16 Identities=31% Similarity=0.626 Sum_probs=14.4
Q ss_pred cCCCCCCEEEEECCee
Q 029301 126 DGLQLGDQVLKFGTVE 141 (195)
Q Consensus 126 aGL~~GD~I~~ing~~ 141 (195)
+.|++||.|+.++|.-
T Consensus 35 ~sLk~GD~VvT~GGi~ 50 (113)
T PRK06531 35 NAIQKGDEVVTIGGLY 50 (113)
T ss_pred HhcCCCCEEEECCCcE
Confidence 4699999999999986
No 117
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=23.85 E-value=1.1e+02 Score=25.71 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 029301 5 NLKAEIMSLMEKRSALEADMNAII 28 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~ 28 (195)
.+..++.+|..+|++||+||..-+
T Consensus 15 ~Lq~eIe~LerR~~ri~~EmrtsF 38 (283)
T PF11285_consen 15 ALQIEIEQLERRRERIEKEMRTSF 38 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc
Confidence 455689999999999999997654
No 118
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.84 E-value=1.4e+02 Score=25.59 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRL 31 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L 31 (195)
.+.+++.+|.+++.++++||.++...+
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666655544
No 119
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=23.46 E-value=1.9e+02 Score=19.67 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301 6 LKAEIMSLMEKRSALEADMNAIIDRLS 32 (195)
Q Consensus 6 ~~~~~~~l~~~k~~iE~el~~~~~~L~ 32 (195)
+..++..|.++...++.+++.+-..|.
T Consensus 74 ~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 74 LEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777777777777777777777664
No 120
>PRK13746 aminoglycoside resistance protein; Provisional
Probab=23.29 E-value=60 Score=27.19 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhccCC-----CCCCCCCCCCCCCCCCCCCchhhh
Q 029301 19 ALEADMNAIIDRLSQSN-----GPGLSGNLVDSEGFPRTDIDIHLV 59 (195)
Q Consensus 19 ~iE~el~~~~~~L~~~~-----~~~~~~~lvd~eG~Pr~d~dl~~v 59 (195)
+|+.+|++..++|+.-. ++-+-||.+.-.=.|.+|+|+..+
T Consensus 8 ~i~~~l~~~~~~l~~~l~~~l~~vyLfGS~~~G~~~p~SDIDllvv 53 (262)
T PRK13746 8 EISTQLSEACAVIERHLEPTLLAIHLYGSAVDGGLKPHSDIDLLVT 53 (262)
T ss_pred HHHHHHHHHHHHHHHhCcccEEEEEEECCcccCCCCCCCceeEEEE
Confidence 56777776666665421 357788988743379999999665
No 121
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=23.18 E-value=1.2e+02 Score=28.61 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029301 4 TNLKAEIMSLMEKRSALEADMNAIID 29 (195)
Q Consensus 4 ~~~~~~~~~l~~~k~~iE~el~~~~~ 29 (195)
+..+.|+.+|..+|.++.+||+++..
T Consensus 89 ~sVs~EL~ele~krqel~seI~~~n~ 114 (907)
T KOG2264|consen 89 ASVSLELTELEVKRQELNSEIEEINT 114 (907)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34566778888887777777766543
No 122
>PTZ00412 leucyl aminopeptidase; Provisional
Probab=23.09 E-value=61 Score=30.22 Aligned_cols=26 Identities=4% Similarity=0.023 Sum_probs=22.6
Q ss_pred EEEcCCChhhhcCCCCCCEEEEECCee
Q 029301 115 DEITDASPAAEDGLQLGDQVLKFGTVE 141 (195)
Q Consensus 115 ~~V~~~SpA~~aGL~~GD~I~~ing~~ 141 (195)
....+|.|...| .+|||+|++.||+.
T Consensus 349 iplaENm~sg~A-~rPGDVits~nGkT 374 (569)
T PTZ00412 349 VGLAENAIGPES-YHPSSIITSRKGLT 374 (569)
T ss_pred EEhhhcCCCCCC-CCCCCEeEecCCCE
Confidence 345678898888 99999999999998
No 123
>PHA01750 hypothetical protein
Probab=22.23 E-value=1.8e+02 Score=19.13 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIID 29 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~ 29 (195)
+++-++.++-.+-|+||.++.++-.
T Consensus 46 NL~~ei~~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 46 NLKTEIEELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4555666666666677766666543
No 124
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=22.03 E-value=1.3e+02 Score=19.39 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301 7 KAEIMSLMEKRSALEADMNAIIDRLS 32 (195)
Q Consensus 7 ~~~~~~l~~~k~~iE~el~~~~~~L~ 32 (195)
++||++....|.++-+++-.+.+.|.
T Consensus 2 l~ELr~VL~ERNeLK~~v~~leEEL~ 27 (60)
T PF11461_consen 2 LQELREVLQERNELKARVFLLEEELA 27 (60)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888999998888888777774
No 125
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=21.81 E-value=1.8e+02 Score=17.67 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 029301 7 KAEIMSLMEKRSALE 21 (195)
Q Consensus 7 ~~~~~~l~~~k~~iE 21 (195)
.+++.+|.++|..+-
T Consensus 25 d~qIaeLe~KR~~Lv 39 (46)
T PF08946_consen 25 DEQIAELEAKRQRLV 39 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555554443
No 126
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=21.81 E-value=1.3e+02 Score=21.84 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIID 29 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~ 29 (195)
....++.+|.+++..+|+|++.|.+
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L~d 85 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDLKD 85 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456788888888888888887764
No 127
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=21.67 E-value=65 Score=28.60 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=16.1
Q ss_pred cCCCCCCEEEEECCeeCCCCcHHHHHH
Q 029301 126 DGLQLGDQVLKFGTVEAGDNLLERLAA 152 (195)
Q Consensus 126 aGL~~GD~I~~ing~~~~v~~~~~l~~ 152 (195)
+=|++||.++++-|.+ .++++++.-
T Consensus 91 g~LrpGD~ll~~tG~P--YDTL~~VIG 115 (403)
T PF06838_consen 91 GVLRPGDELLSITGKP--YDTLEEVIG 115 (403)
T ss_dssp HH--TT-EEEESSSS----CCHHHHHT
T ss_pred hcCCCCCeEEEcCCCc--hhhHHHHhC
Confidence 3489999999999999 888777654
No 128
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=21.65 E-value=1.9e+02 Score=19.04 Aligned_cols=26 Identities=15% Similarity=0.446 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301 8 AEIMSLMEKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 8 ~~~~~l~~~k~~iE~el~~~~~~L~~ 33 (195)
++|.++.+..++++.+|+.+..-+..
T Consensus 4 ~~Ld~~~~~~~~~~~~l~~~~~~~~~ 29 (92)
T PF05190_consen 4 EELDELREEYEEIEEELEELLEEIRK 29 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888776654
No 129
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=21.59 E-value=60 Score=23.26 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.9
Q ss_pred hcCCCCCCEEEEECCee
Q 029301 125 EDGLQLGDQVLKFGTVE 141 (195)
Q Consensus 125 ~aGL~~GD~I~~ing~~ 141 (195)
...|++||.|+.++|.-
T Consensus 50 ~~~Lk~Gd~VvT~gGi~ 66 (106)
T PRK05585 50 LSSLAKGDEVVTNGGII 66 (106)
T ss_pred HHhcCCCCEEEECCCeE
Confidence 34699999999999986
No 130
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=21.57 E-value=60 Score=23.50 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=14.6
Q ss_pred cCCCCCCEEEEECCee
Q 029301 126 DGLQLGDQVLKFGTVE 141 (195)
Q Consensus 126 aGL~~GD~I~~ing~~ 141 (195)
+.|++||.|+..+|.-
T Consensus 37 ~~Lk~GD~VvT~gGi~ 52 (109)
T PRK05886 37 ESLQPGDRVHTTSGLQ 52 (109)
T ss_pred HhcCCCCEEEECCCeE
Confidence 5699999999999986
No 131
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=21.22 E-value=71 Score=23.78 Aligned_cols=17 Identities=35% Similarity=0.515 Sum_probs=14.8
Q ss_pred hhhcCCCCCCEEEEECC
Q 029301 123 AAEDGLQLGDQVLKFGT 139 (195)
Q Consensus 123 A~~aGL~~GD~I~~ing 139 (195)
|.+.||++|++|..++=
T Consensus 1 A~~LG~~~g~vVqE~g~ 17 (127)
T PF11253_consen 1 ADKLGFKPGQVVQEFGW 17 (127)
T ss_pred CcccCCCCCCEEEEeCC
Confidence 56789999999999974
No 132
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=21.18 E-value=67 Score=21.95 Aligned_cols=16 Identities=38% Similarity=0.702 Sum_probs=14.3
Q ss_pred cCCCCCCEEEEECCee
Q 029301 126 DGLQLGDQVLKFGTVE 141 (195)
Q Consensus 126 aGL~~GD~I~~ing~~ 141 (195)
+.|++||.|+..+|.-
T Consensus 36 ~~L~~Gd~VvT~gGi~ 51 (84)
T TIGR00739 36 ESLKKGDKVLTIGGII 51 (84)
T ss_pred HhCCCCCEEEECCCeE
Confidence 4699999999999986
No 133
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=21.05 E-value=2.1e+02 Score=20.26 Aligned_cols=30 Identities=13% Similarity=0.316 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQS 34 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~~~ 34 (195)
.+++++..+..++..+|.++.++.-+++.=
T Consensus 14 ~~q~~~~~l~~q~~~le~~~~E~~~v~~eL 43 (110)
T TIGR02338 14 QLQQQLQAVATQKQQVEAQLKEAEKALEEL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999999888653
No 134
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=21.04 E-value=70 Score=20.91 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=12.7
Q ss_pred hhhcCCCCCCEEEEECCe
Q 029301 123 AAEDGLQLGDQVLKFGTV 140 (195)
Q Consensus 123 A~~aGL~~GD~I~~ing~ 140 (195)
-.++|++.||.| .|++.
T Consensus 49 L~~~G~~~GD~V-~Ig~~ 65 (69)
T TIGR03595 49 LRKAGAKDGDTV-RIGDF 65 (69)
T ss_pred HHHcCCCCCCEE-EEccE
Confidence 467899999987 45544
No 135
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.55 E-value=1.4e+02 Score=22.79 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 029301 9 EIMSLMEKRSALEADMNAIIDRL 31 (195)
Q Consensus 9 ~~~~l~~~k~~iE~el~~~~~~L 31 (195)
++.+|.++=.+++.++..+.+.|
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL 102 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAEL 102 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 136
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=20.01 E-value=2.2e+02 Score=20.11 Aligned_cols=67 Identities=13% Similarity=0.189 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCC--Cch-hhhhhHhhHhHhhhhhhhc
Q 029301 4 TNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTD--IDI-HLVRSERRRLAGDDGGSNN 75 (195)
Q Consensus 4 ~~~~~~~~~l~~~k~~iE~el~~~~~~L~~~~~~~~~~~lvd~eG~Pr~d--~dl-~~vr~~r~~i~~l~~~i~~ 75 (195)
+-+|.++.+|.++.+.++.||+.+...+ |..+-.+. -.+|-|... -.+ ...+.+|..|.+|-+.||.
T Consensus 18 ~LlRRkl~ele~eN~~l~~EL~kyk~~~---g~~d~~~~--~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls~kv~e 87 (96)
T PF11365_consen 18 ELLRRKLSELEDENKQLTEELNKYKSKY---GDLDSLAK--LSEGGSPSGREAELQEELKLAREQINELSGKVME 87 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCccccc--CCCCCCCccccHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3478899999999999999999976644 22221111 123433221 112 3456778888888554443
Done!