Query 029301
Match_columns 195
No_of_seqs 380 out of 2143
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 17:29:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i18_A LMO2051 protein; alpha- 99.6 3.3E-15 1.1E-19 105.8 12.2 84 107-193 4-90 (100)
2 2kjp_A Uncharacterized protein 99.6 1.2E-15 4.2E-20 106.5 3.1 79 111-192 2-84 (91)
3 2zpm_A Regulator of sigma E pr 99.5 2.5E-14 8.6E-19 99.1 9.1 81 112-194 6-90 (91)
4 2kl1_A YLBL protein; structure 99.5 2.9E-14 9.8E-19 99.9 8.0 80 110-192 5-88 (94)
5 3id1_A Regulator of sigma E pr 99.5 1.2E-13 4.2E-18 96.9 9.9 71 110-182 2-75 (95)
6 2i6v_A General secretion pathw 99.4 4.9E-13 1.7E-17 92.2 8.9 67 110-178 19-86 (87)
7 3rle_A Golgi reassembly-stacki 99.4 2.9E-13 9.9E-18 107.8 8.7 82 110-194 112-197 (209)
8 2l97_A HTRA, putative serine p 99.4 9.9E-13 3.4E-17 97.9 11.0 68 110-180 57-125 (134)
9 2p3w_A Probable serine proteas 99.4 7.5E-13 2.6E-17 95.2 7.8 69 110-182 35-103 (112)
10 2hga_A Conserved protein MTH13 99.4 2.2E-12 7.5E-17 95.1 10.4 81 109-194 24-106 (125)
11 2pzd_A Serine protease HTRA2; 99.4 3.2E-12 1.1E-16 92.0 10.3 69 109-181 34-102 (113)
12 1qau_A Neuronal nitric oxide s 99.4 4.3E-12 1.5E-16 91.1 10.6 69 110-180 26-97 (112)
13 3cyy_A Tight junction protein 99.4 2.8E-12 9.7E-17 88.6 8.6 67 110-179 23-92 (92)
14 2i4s_A General secretion pathw 99.4 3.2E-12 1.1E-16 91.1 8.8 66 111-178 38-104 (105)
15 2eaq_A LIM domain only protein 99.3 2.7E-12 9.1E-17 88.6 6.9 61 109-171 27-90 (90)
16 3rle_A Golgi reassembly-stacki 99.3 4.4E-12 1.5E-16 101.0 8.6 84 109-194 15-103 (209)
17 2pkt_A PDZ and LIM domain prot 99.3 1.8E-12 6.1E-17 89.7 5.5 61 110-173 27-89 (91)
18 2vz5_A TAX1-binding protein 3; 99.3 7.9E-12 2.7E-16 93.6 9.3 68 110-179 64-133 (139)
19 2awx_A Synapse associated prot 99.3 7.1E-12 2.4E-16 89.0 8.6 70 110-182 33-105 (105)
20 2pa1_A PDZ and LIM domain prot 99.3 8.6E-12 3E-16 85.5 8.6 59 110-171 26-86 (87)
21 2vsp_A PDZ domain-containing p 99.3 4.2E-12 1.5E-16 87.8 6.7 60 110-172 27-88 (91)
22 2v90_A PDZ domain-containing p 99.3 2.9E-12 1E-16 89.5 5.3 59 111-172 31-91 (96)
23 3stj_A Protease DEGQ; serine p 99.3 2.1E-11 7.1E-16 104.1 10.5 71 110-182 263-334 (345)
24 2jil_A GRIP1 protein, glutamat 99.3 1.2E-11 4E-16 86.5 6.8 60 110-172 32-94 (97)
25 1wh1_A KIAA1095 protein; PDZ d 99.2 5.5E-12 1.9E-16 92.4 5.1 68 110-179 48-116 (124)
26 2uzc_A Human pdlim5, PDZ and L 99.2 2.4E-11 8.3E-16 83.3 8.0 58 111-171 28-87 (88)
27 2he4_A Na(+)/H(+) exchange reg 99.2 3.2E-11 1.1E-15 83.1 7.9 59 110-171 28-88 (90)
28 1te0_A Protease DEGS; two doma 99.2 3.5E-11 1.2E-15 101.4 9.7 69 110-180 244-313 (318)
29 1ihj_A INAD; intermolecular di 99.2 3.3E-11 1.1E-15 84.3 8.0 59 110-171 37-98 (98)
30 2jxo_A Ezrin-radixin-moesin-bi 99.2 1.2E-11 4.1E-16 86.6 5.5 60 110-171 33-94 (98)
31 2rcz_A Tight junction protein 99.2 6.2E-11 2.1E-15 79.6 8.3 58 110-170 21-81 (81)
32 3khf_A Microtubule-associated 99.2 4.1E-11 1.4E-15 84.0 7.6 58 111-171 35-94 (99)
33 1y8t_A Hypothetical protein RV 99.2 7.1E-11 2.4E-15 99.6 10.3 72 109-182 241-314 (324)
34 2q3g_A PDZ and LIM domain prot 99.2 5.3E-11 1.8E-15 81.9 7.8 59 110-171 27-87 (89)
35 1wf7_A Enigma homologue protei 99.2 6.7E-12 2.3E-16 88.9 3.1 66 112-180 31-98 (103)
36 3sfj_A TAX1-binding protein 3; 99.2 1E-10 3.5E-15 82.6 9.0 59 109-169 44-104 (104)
37 1um1_A KIAA1849 protein, RSGI 99.2 1E-11 3.6E-16 88.8 3.8 71 109-182 35-108 (110)
38 1kwa_A Hcask/LIN-2 protein; PD 99.2 6.4E-11 2.2E-15 81.6 7.6 58 111-171 26-86 (88)
39 1vb7_A PDZ and LIM domain 2; P 99.2 2.2E-11 7.4E-16 84.8 5.3 60 110-172 30-91 (94)
40 2w4f_A Protein LAP4; structura 99.2 5.3E-11 1.8E-15 83.0 7.0 62 109-172 33-95 (97)
41 3qik_A Phosphatidylinositol 3, 99.2 5.8E-11 2E-15 84.0 7.1 59 109-167 38-98 (101)
42 2yub_A LIMK-2, LIM domain kina 99.2 1.1E-11 3.8E-16 90.3 3.5 63 110-175 44-110 (118)
43 1w9e_A Syntenin 1; cell adhesi 99.2 1E-10 3.5E-15 89.5 9.0 79 109-192 26-106 (166)
44 3qo6_A Protease DO-like 1, chl 99.2 5.3E-11 1.8E-15 101.5 8.1 71 110-182 251-333 (348)
45 2i04_A Membrane-associated gua 99.2 1.3E-10 4.5E-15 79.1 8.6 57 110-168 25-85 (85)
46 3tsv_A Tight junction protein 99.2 7.2E-11 2.5E-15 86.6 7.7 60 110-171 51-113 (124)
47 2vsv_A Rhophilin-2; scaffold p 99.2 1.2E-10 4.2E-15 83.7 8.6 58 111-170 45-104 (109)
48 1x5q_A LAP4 protein; PDZ domai 99.2 1E-10 3.5E-15 83.6 8.2 61 109-172 45-107 (110)
49 1b8q_A Protein (neuronal nitri 99.2 1.8E-11 6.1E-16 89.8 4.3 69 110-180 33-104 (127)
50 1v5l_A PDZ and LIM domain 3; a 99.2 2.6E-11 8.8E-16 85.9 4.8 60 111-173 30-91 (103)
51 4a8c_A Periplasmic PH-dependen 99.2 2.5E-10 8.4E-15 100.3 12.1 71 110-182 263-334 (436)
52 2eeh_A PDZ domain-containing p 99.2 1.3E-10 4.3E-15 81.8 8.3 58 110-171 36-95 (100)
53 2kjd_A Sodium/hydrogen exchang 99.2 2E-12 6.9E-17 94.9 -1.1 69 110-180 33-105 (128)
54 1lcy_A HTRA2 serine protease; 99.2 1.4E-10 4.8E-15 98.1 10.0 67 110-180 256-322 (325)
55 1rgw_A ZAsp protein; PDZ, cyph 99.2 7.4E-11 2.5E-15 80.3 6.7 57 111-170 26-84 (85)
56 1uf1_A KIAA1526 protein; PDZ d 99.2 2E-11 7E-16 89.7 4.1 69 110-182 46-118 (128)
57 2kom_A Partitioning defective 99.1 1.9E-10 6.3E-15 83.9 9.1 60 110-171 58-121 (121)
58 2f5y_A Regulator of G-protein 99.1 2.1E-10 7.1E-15 79.3 8.9 59 111-172 25-85 (91)
59 2jre_A C60-1 PDZ domain peptid 99.1 7.1E-11 2.4E-15 84.1 6.7 60 110-172 44-106 (108)
60 2opg_A Multiple PDZ domain pro 99.1 1.5E-10 5.3E-15 80.8 8.3 61 110-173 30-93 (98)
61 2fcf_A Multiple PDZ domain pro 99.1 1.5E-10 5.1E-15 81.6 8.2 59 110-171 39-100 (103)
62 1d5g_A Human phosphatase HPTP1 99.1 2.2E-10 7.5E-15 79.7 8.8 59 110-171 33-94 (96)
63 1n7e_A AMPA receptor interacti 99.1 1.9E-10 6.6E-15 80.3 8.5 60 110-172 30-92 (97)
64 1g9o_A NHE-RF; PDZ domain, com 99.1 1.5E-10 5E-15 79.8 7.7 60 110-171 27-88 (91)
65 2fne_A Multiple PDZ domain pro 99.1 2.3E-10 7.8E-15 83.0 9.1 60 110-172 53-115 (117)
66 2koj_A Partitioning defective 99.1 2.4E-10 8.2E-15 81.7 9.0 61 110-172 39-103 (111)
67 3cbz_A Dishevelled-2; PDZ doma 99.1 1.5E-10 5E-15 82.8 7.8 61 109-171 32-97 (108)
68 2ego_A General receptor for ph 99.1 2.6E-10 8.8E-15 79.6 8.8 57 110-169 37-95 (96)
69 1v5q_A GRIP1 homolog, glutamat 99.1 1.1E-10 3.9E-15 85.1 7.2 60 111-172 46-109 (122)
70 3qe1_A Sorting nexin-27, G pro 99.1 2.5E-10 8.5E-15 81.1 8.7 60 109-171 42-103 (107)
71 2o2t_A Multiple PDZ domain pro 99.1 2.5E-11 8.6E-16 87.7 3.5 60 110-172 49-112 (117)
72 2eeg_A PDZ and LIM domain prot 99.1 1.3E-10 4.4E-15 80.8 7.0 59 110-171 32-92 (94)
73 4a8c_A Periplasmic PH-dependen 99.1 3.4E-10 1.2E-14 99.3 11.2 71 110-183 363-433 (436)
74 1wi2_A Riken cDNA 2700099C19; 99.1 2.4E-10 8.1E-15 81.0 8.3 57 110-170 41-99 (104)
75 2vwr_A Ligand of NUMB protein 99.1 3E-10 1E-14 79.0 8.5 60 109-171 28-90 (95)
76 3pv2_A DEGQ; trypsin fold, PDZ 99.1 3.7E-10 1.3E-14 99.6 11.1 69 110-180 282-351 (451)
77 2i1n_A Discs, large homolog 3; 99.1 3E-10 1E-14 80.0 8.5 61 109-172 33-96 (102)
78 1p1d_A PDZ45, glutamate recept 99.1 2.8E-10 9.7E-15 89.2 9.0 61 109-171 35-99 (196)
79 3ngh_A PDZ domain-containing p 99.1 6.3E-11 2.2E-15 84.1 4.8 59 110-171 26-86 (106)
80 1ueq_A Membrane associated gua 99.1 4.2E-10 1.4E-14 82.1 9.3 60 110-171 44-107 (123)
81 2yt7_A Amyloid beta A4 precurs 99.1 2.7E-10 9.3E-15 80.3 7.9 59 109-169 36-98 (101)
82 2fe5_A Presynaptic protein SAP 99.1 4.1E-10 1.4E-14 77.9 8.7 58 110-170 33-93 (94)
83 3bpu_A Membrane-associated gua 99.1 1.9E-10 6.4E-15 78.9 6.8 58 110-171 27-87 (88)
84 3r68_A Na(+)/H(+) exchange reg 99.1 2.3E-10 7.7E-15 79.4 7.3 59 110-171 29-89 (95)
85 3r0h_A INAD, inactivation-NO-a 99.1 5.7E-10 1.9E-14 87.7 10.5 81 110-193 45-132 (206)
86 2dlu_A INAD-like protein; PDZ 99.1 8.3E-11 2.8E-15 84.2 5.2 69 110-182 38-109 (111)
87 2djt_A Unnamed protein product 99.1 2.3E-10 8E-15 80.8 7.4 59 110-171 38-99 (104)
88 1uep_A Membrane associated gua 99.1 1.6E-10 5.4E-15 81.7 6.4 60 110-171 34-97 (103)
89 2q9v_A Membrane-associated gua 99.1 2.6E-10 8.9E-15 78.4 7.2 58 111-170 28-89 (90)
90 2ejy_A 55 kDa erythrocyte memb 99.1 2.2E-10 7.6E-15 80.6 6.9 57 110-169 36-95 (97)
91 2byg_A Channel associated prot 99.1 4E-10 1.4E-14 81.7 8.5 59 110-171 54-115 (117)
92 1y7n_A Amyloid beta A4 precurs 99.1 3.7E-10 1.3E-14 78.2 7.9 54 113-169 34-89 (90)
93 2edz_A PDZ domain-containing p 99.1 1E-10 3.5E-15 84.2 5.3 66 109-177 37-104 (114)
94 1wha_A KIAA0147 protein, scrib 99.1 3.6E-10 1.2E-14 80.1 8.0 59 109-170 37-98 (105)
95 2g5m_B Neurabin-2; spinophilin 99.1 5.2E-11 1.8E-15 85.5 3.7 69 109-180 34-105 (113)
96 1wi4_A Synip, syntaxin binding 99.1 2.9E-10 9.9E-15 81.4 7.4 60 110-171 41-106 (109)
97 4amh_A Disks large homolog 1; 99.1 1E-09 3.4E-14 78.1 10.1 59 110-171 32-93 (106)
98 1q3o_A Shank1; PDZ, GKAP, pept 99.1 4.5E-10 1.5E-14 80.1 8.3 57 110-169 45-103 (109)
99 3gsl_A Disks large homolog 4; 99.1 7.2E-10 2.5E-14 86.0 10.1 79 109-192 34-117 (196)
100 2iwq_A Multiple PDZ domain pro 99.1 4.9E-10 1.7E-14 82.0 8.6 58 110-170 59-119 (123)
101 2dls_A PDZ-rhogef, RHO guanine 99.1 3.1E-10 1E-14 78.8 7.0 58 110-171 29-88 (93)
102 1uew_A Membrane associated gua 99.1 2.9E-10 9.7E-15 81.9 7.0 59 111-172 44-105 (114)
103 2kv8_A RGS12, regulator of G-p 99.1 1.4E-10 4.8E-15 78.7 5.1 56 111-169 24-81 (83)
104 2r4h_A Membrane-associated gua 99.1 6.2E-10 2.1E-14 79.9 8.7 60 110-172 49-111 (112)
105 1m5z_A GRIP, AMPA receptor int 99.1 8.3E-10 2.8E-14 76.0 9.1 57 110-169 32-90 (91)
106 2d90_A PDZ domain containing p 99.1 2.6E-10 9E-15 80.3 6.6 59 110-171 30-90 (102)
107 1uit_A Human discs large 5 pro 99.1 1.1E-10 3.6E-15 84.5 4.6 65 110-176 42-107 (117)
108 2dmz_A INAD-like protein; PDZ 99.1 3.2E-10 1.1E-14 83.2 7.2 61 110-173 46-109 (129)
109 1whd_A RGS3, regulator of G-pr 99.1 2.3E-10 7.9E-15 80.5 6.1 58 110-170 36-95 (100)
110 1wif_A RSGI RUH-020, riken cDN 99.1 1.9E-10 6.6E-15 84.7 5.7 58 110-169 49-110 (126)
111 2jik_A Synaptojanin-2 binding 99.1 5.1E-10 1.7E-14 78.6 7.7 59 110-171 37-98 (101)
112 3o46_A Maguk P55 subfamily mem 99.1 6.7E-10 2.3E-14 76.9 8.2 58 110-170 28-88 (93)
113 2e7k_A Maguk P55 subfamily mem 99.1 4.7E-10 1.6E-14 77.7 7.3 58 109-169 28-87 (91)
114 2kpk_A Membrane-associated gua 99.0 6.7E-10 2.3E-14 81.8 8.5 60 110-171 43-106 (129)
115 1vae_A Rhophilin 2, rhophilin, 99.0 2E-10 6.8E-15 82.7 5.5 56 111-168 37-94 (111)
116 1wfg_A Regulating synaptic mem 99.0 8.2E-10 2.8E-14 81.6 8.9 59 110-170 65-127 (131)
117 1ujd_A KIAA0559 protein; PDZ d 99.0 3.4E-10 1.2E-14 81.9 6.6 60 110-172 49-111 (117)
118 2iwn_A Multiple PDZ domain pro 99.0 8.9E-10 3.1E-14 76.4 8.4 59 110-171 33-94 (97)
119 1uez_A KIAA1526 protein; PDZ d 99.0 1.6E-10 5.3E-15 81.4 4.5 59 110-171 35-94 (101)
120 1x6d_A Interleukin-16; PDZ dom 99.0 4.2E-10 1.4E-14 81.5 6.9 63 110-174 42-107 (119)
121 2h2b_A Tight junction protein 99.0 3.9E-10 1.3E-14 80.0 6.6 60 110-172 39-99 (107)
122 1q7x_A PDZ2B domain of PTP-BAS 99.0 5.6E-10 1.9E-14 79.4 7.4 61 109-172 41-104 (108)
123 3axa_A Afadin, nectin-3, prote 99.0 9.8E-10 3.4E-14 77.9 8.6 59 110-171 38-99 (106)
124 1x5n_A Harmonin; PDZ domain, u 99.0 4.3E-11 1.5E-15 86.1 1.4 69 110-182 41-112 (114)
125 1va8_A Maguk P55 subfamily mem 99.0 8.3E-10 2.8E-14 79.4 8.2 59 110-171 48-109 (113)
126 3num_A Serine protease HTRA1; 99.0 2.5E-11 8.5E-16 102.9 0.0 69 110-182 254-322 (332)
127 1v62_A KIAA1719 protein; struc 99.0 5.1E-10 1.7E-14 81.1 6.9 58 111-171 43-103 (117)
128 2qg1_A Multiple PDZ domain pro 99.0 1.6E-09 5.4E-14 74.7 9.0 59 110-171 29-90 (92)
129 2iwo_A Multiple PDZ domain pro 99.0 2.8E-10 9.4E-15 83.0 5.3 61 110-173 53-116 (120)
130 2edp_A Fragment, shroom family 99.0 4E-10 1.4E-14 79.3 6.0 58 111-171 36-95 (100)
131 2d92_A INAD-like protein; PDZ 99.0 8.1E-10 2.8E-14 78.8 7.6 58 110-169 44-104 (108)
132 1nf3_C PAR-6B; semi-CRIB motif 99.0 8.6E-10 2.9E-14 81.1 7.9 59 110-171 65-126 (128)
133 4fgm_A Aminopeptidase N family 99.0 1.3E-09 4.4E-14 99.2 10.6 68 110-180 496-564 (597)
134 2gzv_A PRKCA-binding protein; 99.0 1.2E-09 4E-14 78.9 8.1 56 110-168 50-108 (114)
135 3i4w_A Disks large homolog 4; 99.0 1.7E-09 5.9E-14 76.1 8.7 58 110-170 35-95 (104)
136 3k1r_A Harmonin; protein-prote 99.0 1.2E-09 4E-14 85.7 8.6 58 110-171 110-169 (192)
137 1mfg_A ERB-B2 interacting prot 99.0 1.8E-09 6.3E-14 74.9 8.7 58 109-170 34-93 (95)
138 2yuy_A RHO GTPase activating p 99.0 1.5E-10 5E-15 84.9 3.2 59 110-171 61-121 (126)
139 2dm8_A INAD-like protein; PDZ 99.0 7.9E-10 2.7E-14 79.6 6.7 61 110-173 43-106 (116)
140 1wfv_A Membrane associated gua 99.0 3.4E-10 1.2E-14 79.7 4.7 58 111-171 37-97 (103)
141 3gsl_A Disks large homolog 4; 99.0 9.8E-10 3.4E-14 85.3 7.7 61 110-173 130-193 (196)
142 2db5_A INAD-like protein; PDZ 99.0 1E-09 3.4E-14 80.5 7.3 59 110-171 54-116 (128)
143 3e17_A Tight junction protein 99.0 1.6E-09 5.6E-14 74.4 7.7 56 111-169 22-80 (88)
144 1qav_A Alpha-1 syntrophin (res 99.0 2.7E-09 9.3E-14 73.3 8.7 56 110-168 30-88 (90)
145 3b76_A E3 ubiquitin-protein li 99.0 1.8E-09 6.3E-14 78.4 8.2 57 110-169 53-112 (118)
146 2qkv_A Inactivation-NO-after-p 99.0 1.3E-09 4.4E-14 76.1 7.1 57 110-169 31-90 (96)
147 3hpk_A Protein interacting wit 99.0 2E-09 6.9E-14 78.6 8.4 56 110-168 45-103 (125)
148 2dkr_A LIN-7 homolog B; LIN-7B 99.0 1.9E-09 6.6E-14 74.4 7.7 58 110-170 30-90 (93)
149 3kzd_A TIAM-1, T-lymphoma inva 99.0 2.3E-09 8E-14 75.0 8.1 53 110-167 35-89 (94)
150 1ufx_A KIAA1526 protein; PDZ d 99.0 7.7E-10 2.6E-14 78.5 5.7 59 110-170 32-97 (103)
151 2qt5_A Glutamate receptor-inte 99.0 4.5E-09 1.5E-13 82.4 10.8 58 110-170 33-93 (200)
152 3pv2_A DEGQ; trypsin fold, PDZ 99.0 1.9E-09 6.6E-14 95.0 9.4 65 110-177 386-450 (451)
153 1wf8_A Neurabin-I; PDZ domain, 99.0 2E-09 6.7E-14 76.5 7.7 58 110-170 40-100 (107)
154 3l4f_D SH3 and multiple ankyri 99.0 2.6E-09 8.8E-14 79.1 8.5 59 110-171 65-125 (132)
155 1uhp_A Hypothetical protein KI 99.0 5.5E-09 1.9E-13 74.1 9.9 59 109-170 40-101 (107)
156 1fc6_A Photosystem II D1 prote 99.0 3.1E-09 1.1E-13 91.8 10.3 69 110-180 99-172 (388)
157 2eno_A Synaptojanin-2-binding 99.0 2.4E-09 8.1E-14 77.7 8.1 61 109-172 46-109 (120)
158 2z17_A Pleckstrin homology SEC 99.0 1.2E-09 4E-14 77.3 6.2 54 110-166 48-103 (104)
159 2daz_A INAD-like protein; PDZ 98.9 3E-09 1E-13 77.6 8.1 67 110-179 51-121 (124)
160 2qt5_A Glutamate receptor-inte 98.9 2.1E-09 7.3E-14 84.3 7.8 61 110-173 135-198 (200)
161 2la8_A Inactivation-NO-after-p 98.9 2.1E-09 7E-14 76.6 6.9 57 110-169 25-84 (106)
162 1wg6_A Hypothetical protein (r 98.9 1.2E-09 4E-14 80.3 5.7 60 110-171 55-123 (127)
163 2d8i_A T-cell lymphoma invasio 98.9 1.4E-09 4.7E-14 78.7 5.9 56 110-170 44-101 (114)
164 4e34_A Golgi-associated PDZ an 98.9 4.2E-09 1.4E-13 71.8 8.0 55 111-168 29-86 (87)
165 1i16_A Interleukin 16, LCF; cy 98.9 1.3E-09 4.4E-14 80.4 5.8 60 110-171 57-119 (130)
166 3nfk_A Tyrosine-protein phosph 98.9 3.6E-09 1.2E-13 75.0 7.7 57 111-169 44-107 (107)
167 2qbw_A PDZ-fibronectin fusion 98.9 1.1E-08 3.9E-13 79.6 11.2 68 108-179 22-94 (195)
168 1r6j_A Syntenin 1; PDZ, membra 98.9 4.7E-09 1.6E-13 71.6 7.8 55 113-168 26-80 (82)
169 1n7t_A 99-MER peptide of densi 98.9 2.6E-09 8.9E-14 75.3 6.7 58 109-170 42-101 (103)
170 2edv_A FERM and PDZ domain-con 98.9 1.4E-09 4.7E-14 76.0 5.2 57 110-170 31-89 (96)
171 2eei_A PDZ domain-containing p 98.9 1.8E-09 6.1E-14 76.4 5.7 59 110-171 32-92 (106)
172 1uju_A Scribble; PDZ domain, c 98.9 1.1E-09 3.7E-14 78.3 4.3 59 109-170 43-104 (111)
173 3egg_C Spinophilin; PP1, serin 98.9 7.7E-09 2.6E-13 79.8 9.1 57 110-169 111-170 (170)
174 1tp5_A Presynaptic density pro 98.9 4.3E-09 1.5E-13 76.1 7.2 58 110-170 38-98 (119)
175 1p1d_A PDZ45, glutamate recept 98.9 4.4E-09 1.5E-13 82.4 7.7 58 110-170 135-195 (196)
176 1ujv_A Membrane associated gua 98.9 6.6E-09 2.3E-13 72.5 7.8 58 110-171 32-92 (96)
177 1v6b_A Harmonin isoform A1; st 98.9 4.7E-09 1.6E-13 76.0 7.1 57 111-169 44-106 (118)
178 2dc2_A GOPC, golgi associated 98.9 9.3E-09 3.2E-13 72.6 8.4 58 111-171 36-96 (103)
179 2ehr_A INAD-like protein; PDZ 98.9 5.1E-09 1.7E-13 75.5 7.1 60 109-171 49-111 (117)
180 2cs5_A Tyrosine-protein phosph 98.9 3.3E-09 1.1E-13 76.7 5.9 60 111-172 42-108 (119)
181 1ky9_A Protease DO, DEGP, HTRA 98.8 9.1E-10 3.1E-14 97.0 1.4 69 110-180 286-355 (448)
182 3tsz_A Tight junction protein 98.8 1.2E-08 4.2E-13 88.3 8.2 59 110-170 31-92 (391)
183 2csj_A TJP2 protein; PDZ domai 98.8 1.2E-08 3.9E-13 73.6 6.5 60 109-172 45-106 (117)
184 3suz_A Amyloid beta A4 precurs 98.8 2.9E-09 9.8E-14 92.2 3.7 81 108-192 230-314 (388)
185 1um7_A Synapse-associated prot 98.8 9E-09 3.1E-13 73.5 5.5 58 110-170 39-99 (113)
186 4fln_A Protease DO-like 2, chl 98.8 2.5E-08 8.6E-13 89.6 9.7 68 110-180 277-355 (539)
187 2krg_A Na(+)/H(+) exchange reg 98.7 2.9E-09 9.8E-14 85.3 2.7 68 110-180 33-105 (216)
188 3k50_A Putative S41 protease; 98.7 8.1E-09 2.8E-13 89.8 4.0 57 111-171 91-147 (403)
189 3r0h_A INAD, inactivation-NO-a 98.7 3.3E-08 1.1E-12 77.5 7.2 57 110-169 136-195 (206)
190 3shw_A Tight junction protein 98.6 6.2E-08 2.1E-12 85.7 8.2 59 110-170 23-84 (468)
191 3soe_A Membrane-associated gua 98.6 1.6E-07 5.4E-12 67.7 9.0 59 111-173 35-96 (113)
192 1ky9_A Protease DO, DEGP, HTRA 98.6 4.7E-09 1.6E-13 92.4 0.0 65 110-177 383-447 (448)
193 2lob_A Golgi-associated PDZ an 98.0 5E-09 1.7E-13 75.4 0.0 55 110-167 53-110 (112)
194 1z87_A Alpha-1-syntrophin; pro 98.5 9.3E-08 3.2E-12 78.6 6.3 59 110-171 103-164 (263)
195 1w9e_A Syntenin 1; cell adhesi 98.4 3.6E-08 1.2E-12 75.2 -0.2 33 113-147 110-142 (166)
196 2xkx_A Disks large homolog 4; 98.4 5.2E-07 1.8E-11 83.7 7.5 60 109-171 88-150 (721)
197 1k32_A Tricorn protease; prote 98.4 6.9E-07 2.4E-11 85.1 7.9 68 109-179 747-825 (1045)
198 3gge_A PDZ domain-containing p 98.3 6.7E-06 2.3E-10 57.3 9.2 59 110-168 28-88 (95)
199 2xkx_A Disks large homolog 4; 98.2 3.2E-06 1.1E-10 78.4 8.4 58 110-170 331-391 (721)
200 3suz_A Amyloid beta A4 precurs 97.8 3E-06 1E-10 73.1 0.0 55 112-169 317-373 (388)
201 4fln_A Protease DO-like 2, chl 97.7 6.2E-05 2.1E-09 67.6 7.7 61 110-173 415-475 (539)
202 2oxj_A Hybrid alpha/beta pepti 93.9 0.15 5E-06 28.0 4.6 29 4-32 4-32 (34)
203 3m48_A General control protein 92.9 0.24 8.3E-06 27.0 4.4 29 4-32 3-31 (33)
204 3c3g_A Alpha/beta peptide with 92.8 0.27 9.2E-06 26.7 4.5 28 5-32 4-31 (33)
205 3c3f_A Alpha/beta peptide with 91.4 0.5 1.7E-05 25.8 4.5 28 5-32 5-32 (34)
206 1uo4_A General control protein 91.1 0.56 1.9E-05 25.7 4.6 29 4-32 4-32 (34)
207 2bni_A General control protein 91.0 0.51 1.7E-05 25.9 4.3 28 5-32 5-32 (34)
208 2wq1_A General control protein 90.7 0.61 2.1E-05 25.3 4.5 28 5-32 4-31 (33)
209 2r2v_A GCN4 leucine zipper; co 88.9 1 3.5E-05 24.6 4.5 27 5-31 5-31 (34)
210 2hy6_A General control protein 88.5 1.1 3.9E-05 24.4 4.5 29 4-32 4-32 (34)
211 1kd8_B GABH BLL, GCN4 acid bas 87.8 1.3 4.4E-05 24.5 4.5 29 5-33 5-33 (36)
212 1kd8_A GABH AIV, GCN4 acid bas 87.7 1.2 4E-05 24.7 4.2 29 5-33 5-33 (36)
213 3viq_B Mating-type switching p 74.1 4.9 0.00017 26.8 4.3 30 3-32 3-32 (85)
214 3dor_A Protein CT_858, CPAF; m 58.3 36 0.0012 30.6 8.0 15 127-141 109-123 (583)
215 1gk6_A Vimentin; intermediate 54.6 22 0.00076 21.7 4.4 27 7-33 27-53 (59)
216 2yy0_A C-MYC-binding protein; 52.0 33 0.0011 20.5 4.7 29 5-33 23-51 (53)
217 3vmx_A Voltage-gated hydrogen 51.8 33 0.0011 20.2 4.5 29 5-33 15-43 (48)
218 2xv5_A Lamin-A/C; structural p 50.1 27 0.00093 22.4 4.4 27 7-33 32-58 (74)
219 2eqb_B RAB guanine nucleotide 48.9 26 0.00088 23.9 4.3 19 15-33 47-65 (97)
220 3bas_A Myosin heavy chain, str 48.4 30 0.001 22.9 4.6 26 7-32 62-87 (89)
221 3a2a_A Voltage-gated hydrogen 46.2 41 0.0014 20.3 4.4 31 5-36 22-52 (58)
222 2eqb_B RAB guanine nucleotide 43.5 38 0.0013 23.0 4.5 28 5-32 9-36 (97)
223 1gk4_A Vimentin; intermediate 41.2 44 0.0015 21.8 4.5 27 7-33 53-79 (84)
224 1x8y_A Lamin A/C; structural p 38.6 43 0.0015 21.9 4.1 27 7-33 55-81 (86)
225 1zme_C Proline utilization tra 36.8 53 0.0018 19.9 4.2 26 7-32 43-68 (70)
226 2dgc_A Protein (GCN4); basic d 36.5 49 0.0017 20.4 3.9 28 5-32 34-61 (63)
227 2zvf_A Alanyl-tRNA synthetase; 34.2 49 0.0017 24.1 4.3 30 4-33 28-57 (171)
228 3q8t_A Beclin-1; autophagy, AT 33.9 64 0.0022 21.6 4.5 28 4-31 21-48 (96)
229 1bb1_B Designed, thermostable 33.9 55 0.0019 17.3 3.3 23 9-31 3-25 (36)
230 2d7c_C RAB11 family-interactin 33.9 67 0.0023 18.3 4.2 26 6-31 2-27 (42)
231 3pjy_A Hypothetical signal pep 31.6 34 0.0012 24.5 2.9 26 109-135 100-125 (136)
232 3azd_A Short alpha-tropomyosin 31.6 26 0.00087 19.4 1.7 27 5-31 8-34 (37)
233 1go4_E MAD1 (mitotic arrest de 30.3 1.2E+02 0.0043 20.5 5.4 29 5-33 16-44 (100)
234 1gyt_A Cytosol aminopeptidase; 29.3 18 0.00061 31.9 1.2 27 114-141 319-345 (503)
235 1x4t_A Hypothetical protein LO 29.0 71 0.0024 21.4 3.9 23 5-27 56-78 (92)
236 2ovc_A Potassium voltage-gated 28.3 75 0.0026 17.1 3.4 25 6-30 8-32 (33)
237 3mov_A Lamin-B1; LMNB1, B-type 27.5 96 0.0033 20.7 4.5 27 7-33 64-90 (95)
238 3ij3_A Cytosol aminopeptidase; 27.3 21 0.0007 31.4 1.2 27 114-141 299-325 (482)
239 3jru_B Probable cytosol aminop 26.7 21 0.00073 31.4 1.2 26 115-141 312-337 (490)
240 3kzw_A Cytosol aminopeptidase; 25.5 23 0.00077 31.4 1.2 26 115-141 333-358 (515)
241 3s4r_A Vimentin; alpha-helix, 25.3 1.1E+02 0.0038 20.3 4.5 27 5-31 60-86 (93)
242 2wmm_A Chromosome partition pr 25.1 64 0.0022 23.8 3.4 22 11-36 5-26 (162)
243 3o0z_A RHO-associated protein 25.1 89 0.003 23.3 4.2 29 5-33 52-80 (168)
244 1rtm_1 Mannose-binding protein 25.0 98 0.0034 21.5 4.5 26 6-31 2-27 (149)
245 2e7s_A RAB guanine nucleotide 25.0 47 0.0016 23.9 2.6 18 16-33 68-85 (135)
246 3pei_A Cytosol aminopeptidase; 24.9 24 0.00083 31.0 1.3 27 114-141 300-326 (486)
247 2k48_A Nucleoprotein; viral pr 24.1 1.2E+02 0.004 20.9 4.3 56 5-69 32-87 (107)
248 1nkp_B MAX protein, MYC proto- 24.0 1.3E+02 0.0043 19.2 4.5 27 6-32 52-78 (83)
249 2hc9_A Leucine aminopeptidase 23.7 26 0.0009 30.8 1.2 27 114-141 301-327 (491)
250 3kr4_A M17 leucyl aminopeptida 23.4 24 0.00082 31.3 0.9 27 114-141 343-369 (528)
251 1lam_A Leucine aminopeptidase; 23.1 23 0.00077 31.1 0.7 26 115-141 300-325 (484)
252 2hv8_D RAB11 family-interactin 22.9 1.4E+02 0.0048 18.5 4.2 26 6-31 24-49 (64)
253 1fxk_A Prefoldin; archaeal pro 22.8 1.3E+02 0.0044 19.8 4.5 27 6-32 77-103 (107)
254 2wuj_A Septum site-determining 22.3 81 0.0028 18.9 3.0 24 6-29 32-55 (57)
255 1jnm_A Proto-oncogene C-JUN; B 22.3 1.4E+02 0.0047 18.0 4.5 27 5-31 26-52 (62)
256 1l8d_A DNA double-strand break 21.6 1.3E+02 0.0046 20.0 4.5 29 5-33 14-42 (112)
257 3h8g_F Cytosol aminopeptidase; 21.3 26 0.00088 30.9 0.7 27 114-141 316-342 (497)
258 2ocy_A RAB guanine nucleotide 21.0 1E+02 0.0034 22.7 3.8 20 14-33 78-97 (154)
259 1ci6_A Transcription factor AT 20.7 1.5E+02 0.0052 18.0 4.5 26 5-30 27-52 (63)
260 2zqm_A Prefoldin beta subunit 20.5 1.5E+02 0.0051 19.8 4.5 27 6-32 82-108 (117)
261 3u06_A Protein claret segregat 20.4 1E+02 0.0034 26.3 4.2 12 144-155 234-245 (412)
262 2j3t_D Trafficking protein par 20.3 55 0.0019 25.5 2.3 46 123-168 52-100 (219)
No 1
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=99.64 E-value=3.3e-15 Score=105.83 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=73.8
Q ss_pred ccCCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEeccC--C
Q 029301 107 IRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPW--Q 183 (195)
Q Consensus 107 ~~~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~~~--~ 183 (195)
....+++|.+|.++|||++ ||++||+|++|||++ +.+|+++..++.. ..|+.+.++|.|+|+..++++++..| .
T Consensus 4 ~~~~Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~--v~~~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~ 80 (100)
T 3i18_A 4 VTYDGVYVMSVKDDVPAAD-VLHAGDLITEIDGNA--FKSSQEFIDYIHSKKVGDTVKINYKHGDKNEQADIKLTAIDKK 80 (100)
T ss_dssp CCCCCEEEEEECTTSGGGG-TCCTTCEEEEETTBC--CSSHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECEECSTT
T ss_pred EeCCCEEEEEeCCCCchHH-CCCCCCEEEEECCEE--CCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEecCCCC
Confidence 3457899999999999995 999999999999999 9999999999987 46899999999999999999888754 4
Q ss_pred CceeeeEEEE
Q 029301 184 GRGLLGCHFR 193 (195)
Q Consensus 184 ~~~~lGi~l~ 193 (195)
+++.||+.+.
T Consensus 81 ~~~~iGi~~~ 90 (100)
T 3i18_A 81 GTPGIGITLV 90 (100)
T ss_dssp CCEECSEEEG
T ss_pred CCcEEeEEEe
Confidence 6788998764
No 2
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=99.55 E-value=1.2e-15 Score=106.52 Aligned_cols=79 Identities=16% Similarity=0.218 Sum_probs=69.6
Q ss_pred ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhC-CCCeEEEEEEECCEEEEEEEEecc---CCCce
Q 029301 111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLAVTPRP---WQGRG 186 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~-~g~~v~l~V~R~g~~~~~~l~~~~---~~~~~ 186 (195)
+++|..|.++|||++ ||++||+|++|||.+ +.++.++..++... +|+++.++|.|+|+..++++++.. +.+++
T Consensus 2 Gv~V~~V~~~spA~~-GL~~GD~I~~InG~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~gr~ 78 (91)
T 2kjp_A 2 GIYASSVVENMPAKG-KIEVGDKIISADGKN--YQSAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRA 78 (91)
T ss_dssp CSSCCCCCCSSCCSS-CCCSSCEEEEETTBC--CSSHHHHHHHHSSCCSSCEECEEEESSSCEECCCEECCCCTTCTTSC
T ss_pred ceEEEEECCCChHHH-cCCCCCEEEEECCEE--CCCHHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEEeccCCCCCcc
Confidence 466788999999999 999999999999999 99999999999875 689999999999999998888863 35678
Q ss_pred eeeEEE
Q 029301 187 LLGCHF 192 (195)
Q Consensus 187 ~lGi~l 192 (195)
.||+.+
T Consensus 79 ~~~~~~ 84 (91)
T 2kjp_A 79 GIGVSL 84 (91)
T ss_dssp SCCSCC
T ss_pred eeEEee
Confidence 888754
No 3
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=99.55 E-value=2.5e-14 Score=99.09 Aligned_cols=81 Identities=25% Similarity=0.400 Sum_probs=68.7
Q ss_pred eEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecc--CCC--cee
Q 029301 112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRP--WQG--RGL 187 (195)
Q Consensus 112 ~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~~--~~~--~~~ 187 (195)
++|..|.++|||+++||++||+|++|||++ +.+|+++..++....++.+.++|.|+|+..++.+++.. +.+ .+.
T Consensus 6 ~~V~~v~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~~~~g~ 83 (91)
T 2zpm_A 6 PVLENVQPNSAASXAGLQAGDRIVXVDGQP--LTQWVTFVMLVRDNPGXSLALEIERQGSPLSLTLIPESXPGNGXAIGF 83 (91)
T ss_dssp CBCSEECTTSHHHHTTCCTTCEEEEETTEE--CCCHHHHHHHHHHCTTCCEEEEEEETTEEEEEEECCEEECCSSSCEEE
T ss_pred eEEEEECCCChHHhcCCCCCCEEEEECCeE--cCCHHHHHHHHhcCCCCeEEEEEEECCeEEEEEEEEeeecCCCceEEE
Confidence 568899999999999999999999999999 99999999999887788999999999999888887753 222 246
Q ss_pred eeEEEEe
Q 029301 188 LGCHFRM 194 (195)
Q Consensus 188 lGi~l~p 194 (195)
+||.+..
T Consensus 84 ~g~~~~~ 90 (91)
T 2zpm_A 84 VGIEPXV 90 (91)
T ss_dssp CCEECCC
T ss_pred EEEEEee
Confidence 7876543
No 4
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=99.52 E-value=2.9e-14 Score=99.94 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=69.9
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhC-CCCeEEEEEEECCEEEEEEEEeccC---CCc
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLAVTPRPW---QGR 185 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~-~g~~v~l~V~R~g~~~~~~l~~~~~---~~~ 185 (195)
.+++|..|.++|||++ ||++||+|++|||.+ +.++.++..++... .|+++.++|.|+|+..++++++..+ .++
T Consensus 5 ~Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~~~ 81 (94)
T 2kl1_A 5 KGVYVMSVLPNMPAAG-RLEAGDRIAAIDGQP--INTSEQIVSYVREKQAGDRVRVTFIRDRKQHEAELVLKPFPHHPNQ 81 (94)
T ss_dssp CCEECCCCCTTSTTBT-TBCTTCEEEEETTBC--CCCHHHHHHHHHHSCTTCCEEEEEEETTEEEEEEECCCBCSSCTTC
T ss_pred CcEEEEEECCCChHHh-CCCCCCEEEEECCEE--CCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEeeCCCCCCC
Confidence 4678899999999999 999999999999999 99999999999875 7899999999999999999888633 456
Q ss_pred eeeeEEE
Q 029301 186 GLLGCHF 192 (195)
Q Consensus 186 ~~lGi~l 192 (195)
..+|+.+
T Consensus 82 ~~~~~~~ 88 (94)
T 2kl1_A 82 IGLGVTL 88 (94)
T ss_dssp BCCSCC-
T ss_pred cEEEEEe
Confidence 7788765
No 5
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=99.50 E-value=1.2e-13 Score=96.89 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=62.1
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCC-CCeEEEEEEECC--EEEEEEEEeccC
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQ-GNAVPVVIMRQG--GLINLAVTPRPW 182 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~-g~~v~l~V~R~g--~~~~~~l~~~~~ 182 (195)
+.++|.+|.++|||++|||++||+|++|||++ +.+|+++...+.... ++.+.++|.|+| ...++++....|
T Consensus 2 ~~p~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~d~~~~l~~~~~~~~v~l~v~R~g~~~~~~~~l~l~~~ 75 (95)
T 3id1_A 2 VRPVVGEIAANSIAAEAQIAPGTELKAVDGIE--TPDWDAVRLQLVDKIGDESTTITVAPFGSDQRRDVKLDLRHW 75 (95)
T ss_dssp CCCBEEEECTTSHHHHTTCCTTCEEEEETTEE--CSSHHHHHHHHHHTTTCSEEEEEEECTTCCCCEEEEEECTTC
T ss_pred CCCEEEeeCCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHHhcCCCcEEEEEEECCCCceEEEEEEcccc
Confidence 34789999999999999999999999999999 999999999888754 478999999987 457777777766
No 6
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=99.44 E-value=4.9e-13 Score=92.15 Aligned_cols=67 Identities=13% Similarity=0.078 Sum_probs=58.9
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVT 178 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~ 178 (195)
.+..|..+.|+|||++|||++||+|++|||++ +.+|.++..++.. ..++++.++|.|+|+..++.++
T Consensus 19 ~G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~--v~~~~d~~~~~~~~~~g~~v~l~v~R~g~~~~~~v~ 86 (87)
T 2i6v_A 19 LGYRVSPGKDPVLFESIGLQDGDMAVALNGLD--LTDPNVMNTLFQSMNEMTEMSLTVERDGQQHDVYIQ 86 (87)
T ss_dssp EEEEEEECSCHHHHHHTTCCTTCEEEEETTEE--TTCHHHHHHHHHTGGGCSEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEeCCCCCHHHHCCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEE
Confidence 35667888888899999999999999999999 9999999988876 4688999999999988777764
No 7
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=99.43 E-value=2.9e-13 Score=107.83 Aligned_cols=82 Identities=24% Similarity=0.366 Sum_probs=72.5
Q ss_pred CceEEEEEcCCChhhhcCCCC-CCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECC--EEEEEEEEec-cCCCc
Q 029301 110 PFAVIDEITDASPAAEDGLQL-GDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG--GLINLAVTPR-PWQGR 185 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~-GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g--~~~~~~l~~~-~~~~~ 185 (195)
.+++|.+|.++|||++|||++ ||+|++||| . +.+++++..++....++++.++|.|++ ..++++++|. .|++.
T Consensus 112 ~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing-~--v~~~~~l~~~l~~~~g~~v~l~v~r~~~~~~~~v~l~p~~~~~g~ 188 (209)
T 3rle_A 112 NVWHVLEVESNSPAALAGLRPHSDYIIGADT-V--MNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNSAWGGE 188 (209)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTTEEEEEESS-C--CCSSSCHHHHHHHTTTSCEEEEEEETTTTEEEEEEECCCTTSSSS
T ss_pred cceEEEEeCCCChHHHCCCCCCCCEEEECCC-E--eCCHHHHHHHHHhCCCCeEEEEEEECCceEEEEEEEEecCCCCCc
Confidence 578999999999999999999 999999999 4 788999999998888899999999964 5678888887 68888
Q ss_pred eeeeEEEEe
Q 029301 186 GLLGCHFRM 194 (195)
Q Consensus 186 ~~lGi~l~p 194 (195)
+.|||.+.+
T Consensus 189 g~lG~~~~~ 197 (209)
T 3rle_A 189 GSLGCGIGY 197 (209)
T ss_dssp SSSCEEEEC
T ss_pred eeeeEEecC
Confidence 999998763
No 8
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=99.43 E-value=9.9e-13 Score=97.87 Aligned_cols=68 Identities=15% Similarity=0.162 Sum_probs=63.3
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhC-CCCeEEEEEEECCEEEEEEEEec
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLAVTPR 180 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~-~g~~v~l~V~R~g~~~~~~l~~~ 180 (195)
.+++|.+|.++|||+ |||++||+|++|||++ +.++.++..++... .|+++.++|.|+|+..++++++.
T Consensus 57 ~g~~V~~V~~~spA~-aGL~~GD~I~~inG~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~ 125 (134)
T 2l97_A 57 SGVIVRSVQSNMPAN-GHLEKYDVITKVDDKE--IASSTDLQSALYNHSIGDTIKITYYRNGKEETTSIKLN 125 (134)
T ss_dssp SCEEEEECSTTSGGG-TTSCSSCEEEEETTEE--CCCHHHHHHHHHHSSTTCEEEEEEEETTEEEEEEEECC
T ss_pred CCEEEEEECCCCchH-HCCCCCCEEEEECCEE--cCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEc
Confidence 568899999999999 9999999999999999 99999999998875 78999999999999999999875
No 9
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=99.40 E-value=7.5e-13 Score=95.20 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=62.3
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEeccC
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPW 182 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~~~ 182 (195)
.+++|..|.++|||+++||++||+|++|||++ +.++.++..++. .++++.++|.|+|+..++++++..+
T Consensus 35 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~l~--~g~~v~l~v~R~g~~~~~~v~~~~~ 103 (112)
T 2p3w_A 35 SGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRP--LVDSSELQEAVL--TESPLLLEVRRGNDDLLFSIAPEVV 103 (112)
T ss_dssp SSEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CCSHHHHHHHHH--HCSSEEEEEEETTEEEEEEECCEEE
T ss_pred CCeEEEEECCCChHHHCCCCCCCEEEEECCEE--CCCHHHHHHHHh--CCCeEEEEEEECCEEEEEEEEEeee
Confidence 57899999999999999999999999999999 999999998884 4678999999999999998887644
No 10
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=99.39 E-value=2.2e-12 Score=95.06 Aligned_cols=81 Identities=19% Similarity=0.218 Sum_probs=67.3
Q ss_pred CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec-cCCCce
Q 029301 109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR-PWQGRG 186 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~-~~~~~~ 186 (195)
..+++|..|.++|||+++ |++||+|++|||++ +.+|+++..++.. ..++++.++| |+|+ .++++.+. .+.+.+
T Consensus 24 ~~gv~V~~V~~~spA~~a-L~~GD~Il~InG~~--v~~~~dl~~~l~~~~~g~~v~l~V-R~g~-~~v~l~~~~~~~~~~ 98 (125)
T 2hga_A 24 PDGVQIDSVVPGSPASKV-LTPGLVIESINGMP--TSNLTTYSAALKTISVGEVINITT-DQGT-FHLKTGRNPNNSSRA 98 (125)
T ss_dssp CCCEEEEEECSSSGGGGT-SCTTCEEEEETTEE--CSSHHHHHHHHTTCCTTCEEEEEE-TTEE-EEEECCBCSSSCCSC
T ss_pred CCceEEEEECCCChHHHh-cCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEE-ECCE-EEEEEeccCCCCCce
Confidence 467899999999999999 99999999999999 9999999999985 6788999999 9888 55555433 234567
Q ss_pred eeeEEEEe
Q 029301 187 LLGCHFRM 194 (195)
Q Consensus 187 ~lGi~l~p 194 (195)
.|||.+.+
T Consensus 99 ~lGi~~~~ 106 (125)
T 2hga_A 99 YMGIRTSN 106 (125)
T ss_dssp BCCEEEEC
T ss_pred EEEEEecC
Confidence 89987654
No 11
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=99.38 E-value=3.2e-12 Score=91.95 Aligned_cols=69 Identities=28% Similarity=0.317 Sum_probs=62.9
Q ss_pred CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecc
Q 029301 109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRP 181 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~~ 181 (195)
..+++|..|.++|||+++||++||+|++|||++ +.++.++..++.. ++++.++|.|+|+..++++++..
T Consensus 34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~l~~--~~~v~l~v~R~g~~~~~~v~~~~ 102 (113)
T 2pzd_A 34 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQM--VQNAEDVYEAVRT--QSQLAVQIRRGRETLTLYVTPEV 102 (113)
T ss_dssp SSCEEEEEEBTTSHHHHHTCCTTCEEEEETTEE--CCSHHHHHHHHHH--CSSEEEEEEETTEEEEEEECCEE
T ss_pred CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHhC--CCeEEEEEEECCEEEEEEEEEee
Confidence 367899999999999999999999999999999 9999999998876 57899999999999999988763
No 12
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=99.37 E-value=4.3e-12 Score=91.08 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=62.7
Q ss_pred CceEEEEEcCCChhhhcCC-CCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 029301 110 PFAVIDEITDASPAAEDGL-QLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR 180 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL-~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~ 180 (195)
.+++|..|.++|||+++|| ++||+|++|||.+ +.+ ++++..++....|+++.++|.|+++..++.+.+.
T Consensus 26 ~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~~~~~ 97 (112)
T 1qau_A 26 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRP--LVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETT 97 (112)
T ss_dssp SCEEEEEECTTSHHHHHTCCCTTCEEEEETTEE--CTTSCHHHHHHHHHHSCSSSEEEEEEECCTTSEEEEEEE
T ss_pred CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCcEEEEEEeCCcccceEeeee
Confidence 4689999999999999998 9999999999999 888 9999999988778899999999998877777765
No 13
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=99.36 E-value=2.8e-12 Score=88.62 Aligned_cols=67 Identities=27% Similarity=0.321 Sum_probs=51.1
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP 179 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~ 179 (195)
.+++|.+|.++|||+++| |++||+|++|||.+ +. ++.++..++.... ..+.++|.|+|+..++.++|
T Consensus 23 ~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~-~~v~l~v~r~g~~~~~~v~p 92 (92)
T 3cyy_A 23 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTV--TENMSLTDAKTLIERSK-GKLKMVVQRDERATLLNVPD 92 (92)
T ss_dssp EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHTTT-TEEEEEEEC-----------
T ss_pred CCEEEEEECCCChHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCC-CcEEEEEEeCCceeeeeCCC
Confidence 467899999999999999 99999999999999 88 9999999887744 48999999999887777654
No 14
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=99.35 E-value=3.2e-12 Score=91.08 Aligned_cols=66 Identities=14% Similarity=0.091 Sum_probs=57.8
Q ss_pred ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEE
Q 029301 111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVT 178 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~ 178 (195)
+..|..+.|+|||+++||++||+|++|||++ +.+|.++..++.. ..++++.++|.|+|+..+++++
T Consensus 38 G~~V~~~~pas~A~~aGl~~GDvI~~ing~~--v~~~~d~~~~~~~~~~g~~v~l~v~R~g~~~~~~v~ 104 (105)
T 2i4s_A 38 GYRVSPGKDPVLFESIGLQDGDMAVALNGLD--LTDPNVMNTLFQSMNEMTEMSLTVERDGQQHDVYIQ 104 (105)
T ss_dssp EEEEEECSCTHHHHHHTCCTTCEEEEETTEE--TTSTTHHHHHHHHHTTCSEEEEEEEETTEEEEEEEE
T ss_pred EEEEecCCCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCeEEEEEEECCEEEEEEEe
Confidence 4557777788888999999999999999999 9999999988876 5788999999999988877764
No 15
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=99.33 E-value=2.7e-12 Score=88.55 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=54.5
Q ss_pred CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCC--CcHHHHHHHHhh-CCCCeEEEEEEECCE
Q 029301 109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGD--NLLERLAAEGRK-NQGNAVPVVIMRQGG 171 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v--~~~~~l~~~l~~-~~g~~v~l~V~R~g~ 171 (195)
..+++|..|.++|||+++||++||+|++|||.+ + .++.++..++.. ..++++.++|.|+|+
T Consensus 27 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 90 (90)
T 2eaq_A 27 IPGIFVASVEAGSPAEFSQLQVDDEIIAINNTK--FSYNDSKEWEEAMAKAQETGHLVMDVRRYGK 90 (90)
T ss_dssp TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CCTTCHHHHHHHHHHHHHHTEEEEEEEEEC-
T ss_pred CCCEEEEEECCCChHHHcCCCCCCEEEEECCEE--ccCCCHHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence 457899999999999999999999999999999 8 899999998876 467899999999763
No 16
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=99.32 E-value=4.4e-12 Score=100.97 Aligned_cols=84 Identities=24% Similarity=0.306 Sum_probs=69.3
Q ss_pred CCceEEEEEcCCChhhhcCCCCC-CEEEEECCeeCCCCcHHHHHHHHh-hCCCCeEEEEEEECC--EEEEEEEEec-cCC
Q 029301 109 RPFAVIDEITDASPAAEDGLQLG-DQVLKFGTVEAGDNLLERLAAEGR-KNQGNAVPVVIMRQG--GLINLAVTPR-PWQ 183 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aGL~~G-D~I~~ing~~~~v~~~~~l~~~l~-~~~g~~v~l~V~R~g--~~~~~~l~~~-~~~ 183 (195)
..+++|.+|.++|||++|||++| |+|++|||++ +.+|.++...+. ...++++.++|.|++ ...++++.|. .|.
T Consensus 15 ~~G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~--v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~~~~v~l~p~~~~~ 92 (209)
T 3rle_A 15 TEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSR--LNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRETSVTPSNLWG 92 (209)
T ss_dssp SEEEEEEEECTTSHHHHTTCCTTTEEEEEETTEE--CCSSSSHHHHHHHHTTTSCEEEEEEETTTCCEEEEEECCCSSSS
T ss_pred CCEEEEEEECCCCHHHHCCCCcCCeEEEEECCEE--CcCHHHHHHHHHhcCCCCEEEEEEEecCCceEEEEEEccccccc
Confidence 35789999999999999999999 9999999999 999888776544 467889999999964 5667777665 576
Q ss_pred CceeeeEEEEe
Q 029301 184 GRGLLGCHFRM 194 (195)
Q Consensus 184 ~~~~lGi~l~p 194 (195)
..+.+|+.+.+
T Consensus 93 ~~~~lGi~~~~ 103 (209)
T 3rle_A 93 GQGLLGVSIRF 103 (209)
T ss_dssp SSSSSCEEEEE
T ss_pred ccCccceEEee
Confidence 77788987653
No 17
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=99.32 E-value=1.8e-12 Score=89.71 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=54.0
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHH--HHHHHHhhCCCCeEEEEEEECCEEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLE--RLAAEGRKNQGNAVPVVIMRQGGLI 173 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~--~l~~~l~~~~g~~v~l~V~R~g~~~ 173 (195)
.+++|..|.++|||+++||++||+|++|||.+ +.++. ++..++.. .++++.++|.|+++..
T Consensus 27 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~g~~~ 89 (91)
T 2pkt_A 27 QPLAISRVTPGSKAALANLCIGDVITAIDGEN--TSNMTHLEAQNRIKG-CTDNLTLTVARSEHES 89 (91)
T ss_dssp EEEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-CSSEEEEEEEEECCCC
T ss_pred CCeEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECCccc
Confidence 35789999999999999999999999999999 77766 88888877 7889999999987643
No 18
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=99.31 E-value=7.9e-12 Score=93.58 Aligned_cols=68 Identities=16% Similarity=0.247 Sum_probs=56.1
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP 179 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~ 179 (195)
.+++|..|.++|||++|||++||+|++|||.+ +. ++.++..++....|+++.++|.|+|+..++.+..
T Consensus 64 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~v~~~~ 133 (139)
T 2vz5_A 64 KGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWD--MTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSM 133 (139)
T ss_dssp CCEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHCCTTCSEEEEEEEECC-------CC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEE--cCCCCHHHHHHHHHhCCCCEEEEEEEECCEEEEEEEee
Confidence 57899999999999999999999999999999 77 6999999998877889999999999887776654
No 19
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=99.31 E-value=7.1e-12 Score=89.04 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=52.3
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEeccC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPW 182 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~~~ 182 (195)
.+++|.+|.++|||+++| |++||+|++|||.+ +. ++.++...+... +..+.++|.|++....+.++|..|
T Consensus 33 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~R~~~~~~~~~~p~~w 105 (105)
T 2awx_A 33 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVS--LEEVTHEEAVTALKNT-SDFVYLKVAKPTSMYISRHHHHHH 105 (105)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCBHHHHHHHHHSC-CSEEEEEEECCCC-----------
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEcCCCCCCccccccCC
Confidence 468999999999999999 99999999999999 64 477777777654 789999999999999999988777
No 20
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=99.31 E-value=8.6e-12 Score=85.49 Aligned_cols=59 Identities=10% Similarity=0.169 Sum_probs=53.8
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++||++||+|++|||.+ +.+ ++++..++.... +++.++|.|+++
T Consensus 26 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~-~~v~l~v~R~~~ 86 (87)
T 2pa1_A 26 TPIMVTKVAERGKAKDADLRPGDIIVAINGES--AEGMLHAEAQSKIRQSP-SPLRLQLDRITS 86 (87)
T ss_dssp EEEEEEEECSSSHHHHTTCCTTCEEEEETTEE--STTCCHHHHHHHHHTCC-SSEEEEEEECCC
T ss_pred CCEEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCC-CeEEEEEEecCC
Confidence 46889999999999999999999999999999 877 899999998766 789999999874
No 21
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=99.30 E-value=4.2e-12 Score=87.85 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=51.4
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL 172 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~ 172 (195)
++++|..|.++|||+++||++||+|++|||++ +. +++++..++... ++++.++|.|++..
T Consensus 27 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~ 88 (91)
T 2vsp_A 27 PGSFIKEVQKGGPADLAGLEDEDVIIEVNGVN--VLDEPYEKVVDRIQSS-GKNVTLLVCGKKAQ 88 (91)
T ss_dssp SCCBC-CCCTTSHHHHTTCCTTCEEEEETTEE--CTTSCHHHHHHHHTTS-CSEEEEEEEC----
T ss_pred CCeEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCEEEEEEEeCCcc
Confidence 56789999999999999999999999999999 87 899999999876 88999999998764
No 22
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=99.29 E-value=2.9e-12 Score=89.46 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=53.9
Q ss_pred ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301 111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL 172 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~ 172 (195)
+++|..|.++|||+++||++||+|++|||.+ +.+ +.++...+... ++++.++|.|++..
T Consensus 31 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~ 91 (96)
T 2v90_A 31 GQFLWEVDPGLPAKKAGMQAGDRLVAVAGES--VEGLGHEETVSRIQGQ-GSCVSLTVVDPEAD 91 (96)
T ss_dssp EEEEEEECTTSHHHHTTCCTTEEEEEETTEE--CTTCCHHHHHHHHHTT-TTEEEEEEECCCTT
T ss_pred CeEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCEEEEEEECCCCc
Confidence 6889999999999999999999999999999 777 89999998875 88999999998754
No 23
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=99.27 E-value=2.1e-11 Score=104.11 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=65.9
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEeccC
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPW 182 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~~~ 182 (195)
.+++|.+|.++|||++|||++||+|++|||++ +.++.++...+.. .+|+++.|+|.|+|+.+++++++..+
T Consensus 263 ~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~ 334 (345)
T 3stj_A 263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKP--LNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 334 (345)
T ss_dssp SSEEEEEECTTSHHHHHTCCTTCEECEETTEE--CSCHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECEEC
T ss_pred ceEEEEEeccCChHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEccc
Confidence 57899999999999999999999999999999 9999999999987 57999999999999999999988643
No 24
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=99.25 E-value=1.2e-11 Score=86.45 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=54.8
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL 172 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~ 172 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +.+ ++++..++.. .++++.++|.|++..
T Consensus 32 ~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~ 94 (97)
T 2jil_A 32 RPVVITSVRPGGPADREGTIKPGDRLLSVDGIR--LLGTTHAEAMSILKQ-CGQEAALLIEYDVSE 94 (97)
T ss_dssp EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CSSCCHHHHHHHHHH-SCSEEEEEEEEECCC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCCc
Confidence 467899999999999999 99999999999999 887 9999999988 788999999997754
No 25
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.25 E-value=5.5e-12 Score=92.41 Aligned_cols=68 Identities=22% Similarity=0.222 Sum_probs=60.5
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP 179 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~ 179 (195)
.+++|..|.++|||+++| |++||+|++|||++ +.++.++..+|....++.+.|+|.|++..++....+
T Consensus 48 ~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~--v~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~~~~ 116 (124)
T 1wh1_A 48 IGIYISEIDPNSIAAKDGRIREGDRIIQINGIE--VQNREEAVALLTSEENKNFSLLIARPELQLDEGWMD 116 (124)
T ss_dssp CCEEEEEECSSSHHHHTCCCCTTCEEEEESSCB--CCSHHHHHHHHTCSSCCSCCEEEEECSSCCCCCCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCHHHHHHHHHhCCCCEEEEEEEECCEEeecccCC
Confidence 578999999999999999 99999999999999 999999999998877889999999998765554443
No 26
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=99.24 E-value=2.4e-11 Score=83.31 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=51.3
Q ss_pred ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCE
Q 029301 111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
+++|..|.++|||+++||++||+|++|||++ +.++ .++...+... ++++.++|.|++.
T Consensus 28 ~~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~~~~~-g~~v~l~v~R~g~ 87 (88)
T 2uzc_A 28 PLTISSLKDGGKAAQANVRIGDVVLSIDGIN--AQGMTHLEAQNKIKGC-TGSLNMTLQRESD 87 (88)
T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTC-CSEEEEEEECCCC
T ss_pred CeEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEeCCC
Confidence 4789999999999999999999999999999 7776 8888777655 7899999999764
No 27
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=99.23 E-value=3.2e-11 Score=83.10 Aligned_cols=59 Identities=19% Similarity=0.294 Sum_probs=53.1
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++||++||+|++|||.+ +.++ +++..++... +.++.++|.|.+.
T Consensus 28 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~ 88 (90)
T 2he4_A 28 PGQYIRSVDPGSPAARSGLRAQDRLIEVNGQN--VEGLRHAEVVASIKAR-EDEARLLVVGPST 88 (90)
T ss_dssp SSEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTSCHHHHHHHHTTS-SSEEEEEEECCCC
T ss_pred CCEEEEEECCCChHHHCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCcEEEEEEccCC
Confidence 57899999999999999999999999999999 7776 8999988876 7899999998754
No 28
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=99.23 E-value=3.5e-11 Score=101.38 Aligned_cols=69 Identities=25% Similarity=0.390 Sum_probs=64.7
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR 180 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~ 180 (195)
.+++|.+|.++|||++|||++||+|++|||++ +.++.++..++.. ..|+++.|+|.|+|+..++++++.
T Consensus 244 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~ 313 (318)
T 1te0_A 244 QGIVVNEVSPDGPAANAGIQVNDLIISVDNKP--AISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQ 313 (318)
T ss_dssp CCEEEEEECTTSTTTTTCCCTTCCEEEETTEE--CCCHHHHHHHHHTSCTTCEEEEEEESSSCEEEEEEECE
T ss_pred CcEEEEEeCCCChHHHCCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEc
Confidence 57899999999999999999999999999999 9999999999987 678999999999999999988875
No 29
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=99.22 E-value=3.3e-11 Score=84.27 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=51.5
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +.++ .++..++.. .++++.++|.|+|+
T Consensus 37 ~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~g~ 98 (98)
T 1ihj_A 37 TGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKD--VRNSTEQAVIDLIKE-ADFKIELEIQTFDK 98 (98)
T ss_dssp EEEEEEEECTTSHHHHHCSCCTTCEEEEETTEE--CTTCCHHHHHHHHHH-SCSEEEEEEEEC--
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhc-CCCeEEEEEEeCCC
Confidence 368899999999999999 99999999999999 7764 888888877 78899999999864
No 30
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=99.22 E-value=1.2e-11 Score=86.60 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=53.8
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++||++||+|++|||++ +.+ +.++..++....++.+.++|.|+|+
T Consensus 33 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~ 94 (98)
T 2jxo_A 33 PGQFIRSVDPDSPAEASGLRAQDRIVEVNGVC--MEGKQHGDVVSAIRAGGDETKLLVVDRETD 94 (98)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTTTTEEEEEECCHHHH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCcEEEEEEECCch
Confidence 47899999999999999999999999999999 887 9999999988777777888888654
No 31
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=99.20 E-value=6.2e-11 Score=79.61 Aligned_cols=58 Identities=29% Similarity=0.402 Sum_probs=50.6
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g 170 (195)
.+++|.+|.++|||+++| |++||+|++|||.+ +. ++.++...+....+ .+.++|.|+|
T Consensus 21 ~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~-~v~l~v~R~g 81 (81)
T 2rcz_A 21 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTV--TENMSLTDAKTLIERSKG-KLKMVVQRDE 81 (81)
T ss_dssp EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEE--CTTCCHHHHHHHHHTSTT-EEEEEEEC--
T ss_pred CCEEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHCCCC-eEEEEEEeCC
Confidence 467899999999999999 99999999999999 88 99999998887544 8899998864
No 32
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=99.20 E-value=4.1e-11 Score=84.00 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=52.3
Q ss_pred ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
+++|..|.++|||+++||++||+|++|||.+ +. ++.++...+. ..|+.+.++|.|+++
T Consensus 35 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~ 94 (99)
T 3khf_A 35 HHVVWSVEDGSPAQEAGLRAGDLITHINGES--VLGLVHMDVVELLL-KSGNKISLRTTALEN 94 (99)
T ss_dssp EEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHH-HSCSEEEEEEECSCS
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHh-cCCCEEEEEEEECCC
Confidence 5689999999999999999999999999999 77 8999998887 467899999999764
No 33
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=99.20 E-value=7.1e-11 Score=99.64 Aligned_cols=72 Identities=26% Similarity=0.216 Sum_probs=65.3
Q ss_pred CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEE-CCEEEEEEEEeccC
Q 029301 109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMR-QGGLINLAVTPRPW 182 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R-~g~~~~~~l~~~~~ 182 (195)
..+++|..|.++|||++|||++||+|++|||++ +.+|.++..++.. ..|+++.|+|.| +|+.+++++++..+
T Consensus 241 ~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~~g~~~~~~v~~~~~ 314 (324)
T 1y8t_A 241 TLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRP--INSADALVAAVRSKAPGATVALTFQDPSGGSRTVQVTLGKA 314 (324)
T ss_dssp SSSEEEEEECTTSTTTTTTCCTTCEEEEETTEE--CCSHHHHHHHHHTSCTTCEEEEEEECSSCCEEEEEEECEEC
T ss_pred CCceEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCCCEEEEEEEEccC
Confidence 356889999999999999999999999999999 9999999999876 578999999999 99999998887643
No 34
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=99.20 E-value=5.3e-11 Score=81.86 Aligned_cols=59 Identities=20% Similarity=0.190 Sum_probs=50.8
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++||++||+|++|||++ +. ++.++...+... ++.+.++|.|++.
T Consensus 27 ~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~~~~~-g~~v~l~v~R~~~ 87 (89)
T 2q3g_A 27 VPLSISRLTPGGKAAQAGVAVGDWVLSIDGEN--AGSLTHIEAQNKIRAC-GERLSLGLSRAIT 87 (89)
T ss_dssp EEEEEEEECTTSHHHHTTCCTTCEEEEETTEE--GGGCCHHHHHHHHHTC-TTEEEEEEEEECC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCEEEEEEEeCCC
Confidence 34789999999999999999999999999999 76 568888777654 7789999998764
No 35
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.19 E-value=6.7e-12 Score=88.87 Aligned_cols=66 Identities=12% Similarity=0.197 Sum_probs=56.8
Q ss_pred eEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 029301 112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR 180 (195)
Q Consensus 112 ~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~ 180 (195)
++|..|.++|||++|||++||+|++|||++ +.++ .++...+... ++.+.++|.|+++..+++++|.
T Consensus 31 v~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~~~~~-g~~v~l~v~R~g~~~~~~v~p~ 98 (103)
T 1wf7_A 31 LTISSLKDGGKASQAHVRIGDVVLSIDGIS--AQGMTHLEAQNKIKAC-TGSLNMTLQRASAAAKSEPVSS 98 (103)
T ss_dssp EEECCCCTTCHHHHTTCCTTCBEEEETTEE--CSSCCHHHHHHHHHHC-SSEEEEEECCCSCCCCCCCCCC
T ss_pred EEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEeCCCcCCCCCCCC
Confidence 688999999999999999999999999999 7664 7777777654 7789999999998887777764
No 36
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=99.18 E-value=1e-10 Score=82.60 Aligned_cols=59 Identities=19% Similarity=0.332 Sum_probs=52.5
Q ss_pred CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEEC
Q 029301 109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQ 169 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~ 169 (195)
..+++|..|.++|||+++||++||+|++|||.+ +. +|+++...+....++++.++|.|+
T Consensus 44 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~g~~v~l~v~R~ 104 (104)
T 3sfj_A 44 DKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWD--MTMVTHDQARKRLTKRSEEVVRLLVTRQ 104 (104)
T ss_dssp CCSEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHTCTTCSEEEEEEEEC
T ss_pred CCCEEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCEEEEEEEcC
Confidence 356899999999999999999999999999999 64 488999999877788999999874
No 37
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.18 E-value=1e-11 Score=88.80 Aligned_cols=71 Identities=24% Similarity=0.272 Sum_probs=60.1
Q ss_pred CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEeccC
Q 029301 109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPW 182 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~~~ 182 (195)
.++++|..|.++|||+++| |++||+|++|||++ +. ++.++...+.. .++.+.|+|.|++...++.++|..|
T Consensus 35 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~~~~~~v~~~~~ 108 (110)
T 1um1_A 35 APGLYIQTLLPGSPAAADGRLSLGDRILEVNGSS--LLGLGYLRAVDLIRH-GGKKMRFLVAKSDVETAKKIHSGPS 108 (110)
T ss_dssp CSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCB--CSSCCHHHHHHHHHT-CCSEEEEEEECCCHHHHHHHSSCSS
T ss_pred CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCcceeEEEEecCC
Confidence 4678999999999999999 99999999999999 64 57788777766 4789999999998877777776543
No 38
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=99.18 E-value=6.4e-11 Score=81.59 Aligned_cols=58 Identities=16% Similarity=0.268 Sum_probs=52.8
Q ss_pred ceEEEEEcCCChhhh-cCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 111 FAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~-aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.++|..|.++|||++ +||++||+|++|||++ +. +|+++..+++...+ ++.++|.|.+.
T Consensus 26 ~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~--v~~~~~~~~~~~l~~~~~-~v~l~v~r~~~ 86 (88)
T 1kwa_A 26 HCIVARIMHGGMIHRQGTLHVGDEIREINGIS--VANQTVEQLQKMLREMRG-SITFKIVPSYR 86 (88)
T ss_dssp GEEEEEECTTSHHHHHTCCCTTCEEEEETTEE--GGGSCHHHHHHHHHHCCE-EEEEEEECCCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhcCCC-cEEEEEECCcC
Confidence 578999999999999 8999999999999999 87 89999999998776 89999988764
No 39
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.18 E-value=2.2e-11 Score=84.79 Aligned_cols=60 Identities=13% Similarity=0.250 Sum_probs=52.9
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGGL 172 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~~ 172 (195)
.+++|..|.++|||+++||++||+|++|||.+ +.++ .++..++.... +++.++|.|+++.
T Consensus 30 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~-~~v~l~v~R~g~~ 91 (94)
T 1vb7_A 30 TPIIVTKVTERGKAEAADLRPGDIIVAINGQS--AENMLHAEAQSKIRQSA-SPLRLQLDRSSGP 91 (94)
T ss_dssp EEEECCCBCTTSSHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTCC-SSEEEEEECCCCC
T ss_pred CCeEEEEECCCCHHHHCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCC-CcEEEEEEECCcC
Confidence 35788999999999999999999999999999 7775 99999888765 7899999998754
No 40
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=99.17 E-value=5.3e-11 Score=83.00 Aligned_cols=62 Identities=24% Similarity=0.355 Sum_probs=51.1
Q ss_pred CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHh-hCCCCeEEEEEEECCEE
Q 029301 109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGR-KNQGNAVPVVIMRQGGL 172 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~-~~~g~~v~l~V~R~g~~ 172 (195)
..+++|..|.++|||+++||++||+|++|||.+ +.++.++..... ...+.++.++|.|+|+.
T Consensus 33 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~ 95 (97)
T 2w4f_A 33 DEGIFISRVSEEGPAARAGVRVGDKLLEVNGVA--LQGAEHHEAVEALRGAGTAVQMRVWRERET 95 (97)
T ss_dssp BCSEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTSCSEEEEEEECCSSC
T ss_pred CCCEEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCcCHHHHHHHHhCCCCeEEEEEEeCCcc
Confidence 357899999999999999999999999999999 877665543322 24788999999998753
No 41
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=99.17 E-value=5.8e-11 Score=84.02 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=51.2
Q ss_pred CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh--CCCCeEEEEEE
Q 029301 109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK--NQGNAVPVVIM 167 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~--~~g~~v~l~V~ 167 (195)
...++|.+|.++|||++|||++||+|++|||.+..+.+|+++..++.. ..++++.+.|.
T Consensus 38 ~~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~ 98 (101)
T 3qik_A 38 NKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVA 98 (101)
T ss_dssp TTEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEe
Confidence 356789999999999999999999999999999223599999999987 47889988875
No 42
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.17 E-value=1.1e-11 Score=90.31 Aligned_cols=63 Identities=16% Similarity=0.279 Sum_probs=57.1
Q ss_pred CceEEEEEcC--CChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCEEEEE
Q 029301 110 PFAVIDEITD--ASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGGLINL 175 (195)
Q Consensus 110 ~~~~V~~V~~--~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~~~~~ 175 (195)
.+++|..|.+ +|||++|||++||+|++|||++ +.+| +++..++... ++.+.++|.|+++..++
T Consensus 44 ~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~--v~~~~~~dl~~~l~~~-g~~v~l~v~R~g~~~~~ 110 (118)
T 2yub_A 44 TTVQVKEVNRMHISPNNRNAIHPGDRILEINGTP--VRTLRVEEVEDAIKQT-SQTLQLLIEHDPVPQRL 110 (118)
T ss_dssp CEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSB--TTTSCHHHHHHHHHCC-SSCEEEEEEECSSCCCC
T ss_pred CcEEEEEecCCCCChHHHcCCCCCCEEEEECCEE--CCCcCHHHHHHHHHhC-CCEEEEEEEECCEEEee
Confidence 5788999999 9999999999999999999999 8888 9999999877 88999999999876543
No 43
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=99.17 E-value=1e-10 Score=89.52 Aligned_cols=79 Identities=20% Similarity=0.219 Sum_probs=62.3
Q ss_pred CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHH-HHH-HHhhCCCCeEEEEEEECCEEEEEEEEeccCCCce
Q 029301 109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLER-LAA-EGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRG 186 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~-l~~-~l~~~~g~~v~l~V~R~g~~~~~~l~~~~~~~~~ 186 (195)
..+++|..|.++|||++|||++||+|++|||++ +.+|.+ +.. ++....++++.++|+|+++..++++++.. ..
T Consensus 26 ~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~~~~~~~~~v~l~vr~~~~~~~v~l~~~~---~~ 100 (166)
T 1w9e_A 26 DNGIFVQLVQANSPASLVGLRFGDQVLQINGEN--CAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDS---TG 100 (166)
T ss_dssp TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHHCCSSEEEEEEECCTTCEEEEEECCT---TS
T ss_pred CCCEEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhcCCCCEEEEEEEcCCCcEEEEEecCC---CC
Confidence 367899999999999999999999999999999 888877 554 44456778999999554477888887532 24
Q ss_pred eeeEEE
Q 029301 187 LLGCHF 192 (195)
Q Consensus 187 ~lGi~l 192 (195)
.+|+.+
T Consensus 101 ~lG~~~ 106 (166)
T 1w9e_A 101 HVGFIF 106 (166)
T ss_dssp CCSEEE
T ss_pred cEeEEE
Confidence 467654
No 44
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=99.17 E-value=5.3e-11 Score=101.53 Aligned_cols=71 Identities=21% Similarity=0.230 Sum_probs=65.5
Q ss_pred CceEEEEEcCCChhhhcCCCC-----------CCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEE
Q 029301 110 PFAVIDEITDASPAAEDGLQL-----------GDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAV 177 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~-----------GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l 177 (195)
.+++|.+|.++|||++|||++ ||+|++|||++ +.+|+++..++.. ..|++++|+|.|+|+..++++
T Consensus 251 ~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~--v~~~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v 328 (348)
T 3qo6_A 251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTK--VSNGSDLYRILDQCKVGDEVTVEVLRGDHKEKISV 328 (348)
T ss_dssp SSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBC--CSSSHHHHHHHTTCCTTCEEEEEEECSSSEEEEEE
T ss_pred ceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEE--eCCHHHHHHHHHhCCCcCEEEEEEEECCEEEEEEE
Confidence 689999999999999999999 99999999999 9999999999976 578999999999999999888
Q ss_pred EeccC
Q 029301 178 TPRPW 182 (195)
Q Consensus 178 ~~~~~ 182 (195)
++..|
T Consensus 329 ~l~~~ 333 (348)
T 3qo6_A 329 TLEPK 333 (348)
T ss_dssp ECEEC
T ss_pred EEccC
Confidence 87644
No 45
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=99.17 E-value=1.3e-10 Score=79.06 Aligned_cols=57 Identities=21% Similarity=0.255 Sum_probs=50.2
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhC-CCCeEEEEEEE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKN-QGNAVPVVIMR 168 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~-~g~~v~l~V~R 168 (195)
.+++|..|.++|||+++| |++||+|++|||++ +. ++.++..++... .++++.++|.|
T Consensus 25 ~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R 85 (85)
T 2i04_A 25 EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTC--VLGHTHAQVVKIFQSIPIGASVDLELCR 85 (85)
T ss_dssp BCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence 458999999999999999 99999999999999 76 578999888875 47889998875
No 46
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=99.17 E-value=7.2e-11 Score=86.59 Aligned_cols=60 Identities=23% Similarity=0.350 Sum_probs=54.2
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhh-CCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRK-NQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~-~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||++|||++||+|++|||.+ +.++ +++..++.. ..++++.|+|.|+++
T Consensus 51 ~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 113 (124)
T 3tsv_A 51 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVD--FTNIIREEAVLFLLDLPKGEEVTILAQKKKD 113 (124)
T ss_dssp SCEEEEEECTTCHHHHTTCCTTEEEEEETTEE--CSSCCHHHHHHHHHHSCTTCEEEEEEEECHH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhcCCCCEEEEEEEECCc
Confidence 57899999999999999999999999999999 8877 899988876 678899999999764
No 47
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=99.16 E-value=1.2e-10 Score=83.67 Aligned_cols=58 Identities=10% Similarity=0.089 Sum_probs=51.4
Q ss_pred ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECC
Q 029301 111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g 170 (195)
.++|..|.++|||++|||++||+|++|||++ +. +++++..++....++++.++|.|..
T Consensus 45 ~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~--v~~~~~~dv~~~i~~~~~~~v~l~V~~~~ 104 (109)
T 2vsv_A 45 PVQVHFLDPYCSASVAGAREGDYIVSIQLVD--CKWLTLSEVMKLLKSFGEDEIEMKVVSLL 104 (109)
T ss_dssp SCEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTTTTSCEEEEEESCC
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCeEEEEEEECC
Confidence 4679999999999999999999999999999 88 6799999988766667999988754
No 48
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.16 E-value=1e-10 Score=83.59 Aligned_cols=61 Identities=25% Similarity=0.369 Sum_probs=50.9
Q ss_pred CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301 109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL 172 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~ 172 (195)
..+++|..|.++|||+++||++||+|++|||.+ +.+ +.++...+.. .++++.|+|.|+++.
T Consensus 45 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~~ 107 (110)
T 1x5q_A 45 DEGIFISRVSEEGPAARAGVRVGDKLLEVNGVA--LQGAEHHEAVEALRG-AGTAVQMRVWRESGP 107 (110)
T ss_dssp CCSEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHS-CCSEEEEEEEECSSC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCcCHHHHHHHhhC-CCCeEEEEEEECCcc
Confidence 356889999999999999999999999999999 776 4444444444 788999999998864
No 49
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.16 E-value=1.8e-11 Score=89.84 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=62.6
Q ss_pred CceEEEEEcCCChhhhcCC-CCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 029301 110 PFAVIDEITDASPAAEDGL-QLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR 180 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL-~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~ 180 (195)
.+++|..|.++|||+++|| ++||+|++|||.+ +.+ ++++..++....|+.+.++|.|+++..++++.+.
T Consensus 33 ~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~~~~~ 104 (127)
T 1b8q_A 33 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRP--LVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETT 104 (127)
T ss_dssp SCEEECCCSSSSSHHHHSSCCTTTCCCEETTEE--CSSSCHHHHHHHHHSCCSSCEEEEEECCCCSEEECCCCC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCeEEEEEEeCCceEEEEEEEE
Confidence 4688999999999999999 9999999999999 888 9999999988778899999999998888877664
No 50
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.16 E-value=2.6e-11 Score=85.86 Aligned_cols=60 Identities=22% Similarity=0.143 Sum_probs=54.7
Q ss_pred ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEEE
Q 029301 111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLI 173 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~ 173 (195)
.++|..|.++|||+++||++||+|++|||++ +.+ +.++..++... ++++.|+|.|+++..
T Consensus 30 ~~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-g~~v~l~v~R~g~~~ 91 (103)
T 1v5l_A 30 PLVITRITPGSKAAAANLCPGDVILAIDGFG--TESMTHADAQDRIKAA-SYQLCLKIDRAETRL 91 (103)
T ss_dssp EEECSCBCTTSTTGGGTCCTTCBEEEETTEE--CSSCCHHHHHHHHTTC-CSEEECEECCCTTTT
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEECCeEc
Confidence 5788899999999999999999999999999 888 99999999876 889999999988644
No 51
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=99.16 E-value=2.5e-10 Score=100.25 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=65.0
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEeccC
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPW 182 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~~~ 182 (195)
.+++|.+|.++|||++|||++||+|++|||++ +.+|.++...+.. ..|+++.++|.|+|+..++++++..|
T Consensus 263 ~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~ 334 (436)
T 4a8c_A 263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKP--LNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 334 (436)
T ss_pred cceEEEEECCCChHHHCCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCC
Confidence 57899999999999999999999999999999 9999999998876 56899999999999999998887644
No 52
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=1.3e-10 Score=81.78 Aligned_cols=58 Identities=14% Similarity=0.235 Sum_probs=50.9
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++||++||+|++|||.+ +.+ +.++...+.. ++++.|+|.|+++
T Consensus 36 ~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~~~~--~~~v~l~v~R~g~ 95 (100)
T 2eeh_A 36 LGIFVSKVEEGSSAERAGLCVGDKITEVNGLS--LESTTMGSAVKVLTS--SSRLHMMVRRMGS 95 (100)
T ss_dssp CCEEEEEECTTSHHHHHTCCSSCEEEEETTEE--CSSCCHHHHHHHHHS--CSSEEEEEEECSC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHhhcC--CCEEEEEEEECCc
Confidence 46899999999999999999999999999999 665 6777777765 6889999999875
No 53
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=99.16 E-value=2e-12 Score=94.94 Aligned_cols=69 Identities=20% Similarity=0.230 Sum_probs=60.5
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEEEE--EEEEec
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLIN--LAVTPR 180 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~~--~~l~~~ 180 (195)
.+++|..|.++|||+++||++||+|++|||.+ +.+ +.++..++....+..+.++|.|+|+..+ +++++.
T Consensus 33 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~~~~~~~~l~~~ 105 (128)
T 2kjd_A 33 PGQFIRSVDPDSPAEASGLRAQDRIVEVNGVC--MEGKQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPS 105 (128)
T ss_dssp CSEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTTCSEEEEEEECHHHHHHHHHHTCCCC
T ss_pred CCEEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCEEEEEEEeCCcceEEEEEEEec
Confidence 47899999999999999999999999999999 888 9999999988777788899999887655 555554
No 54
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=99.15 E-value=1.4e-10 Score=98.07 Aligned_cols=67 Identities=28% Similarity=0.328 Sum_probs=62.1
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR 180 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~ 180 (195)
.+++|.+|.++|||++|||++||+|++|||++ +.+++++..++.. ++++.|+|.|+|+.++++++|.
T Consensus 256 ~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~--v~~~~~l~~~l~~--~~~v~l~v~R~g~~~~~~v~~~ 322 (325)
T 1lcy_A 256 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQM--VQNAEDVYEAVRT--QSQLAVQIRRGRETLTLYVTPE 322 (325)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CCSHHHHHHHHTT--CSSEEEEEEETTEEEEEEECCE
T ss_pred CCeEEEEeCcCChHHHCCCCCCCEEEEECCEE--cCCHHHHHHHHhC--CCeEEEEEEECCEEEEEEEEEe
Confidence 47899999999999999999999999999999 9999999999875 5789999999999999998774
No 55
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=99.15 E-value=7.4e-11 Score=80.27 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=48.8
Q ss_pred ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECC
Q 029301 111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g 170 (195)
+++|..|.++|||+++||++||+|++|||.+ +.++ .++...+... +.++.++|.|++
T Consensus 26 ~v~V~~V~~~spA~~aGl~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~R~~ 84 (85)
T 1rgw_A 26 PLTISRITPGSKAAQSQLSQGDLVVAIDGVN--TDTMTHLEAQNKIKSA-SYNLSLTLQKSK 84 (85)
T ss_dssp CCBEEEECTTSHHHHSSCCCCSBEEEETTEE--CTTCCHHHHHHHHTTC-SSCEEEEEESCC
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCcCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence 5789999999999999999999999999999 7665 7777777553 457999999876
No 56
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.15 E-value=2e-11 Score=89.69 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=57.0
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec--cC
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR--PW 182 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~--~~ 182 (195)
.+++|..|.++|||+++||++||+|++|||.+ +.++ .++...+.. ++++.++|.|+|+..++.+++. .|
T Consensus 46 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~--v~~~~~~~~~~~~~~--~~~v~l~v~R~g~~~~~~v~~~~~~w 118 (128)
T 1uf1_A 46 LGIYITGVDPGSEAEGSGLKVGDQILEVNGRS--FLNILHDEAVRLLKS--SRHLILTVKDVGRLPHARTTVDETKW 118 (128)
T ss_dssp CCCEEEEECTTCHHHHHTCCTTCEEEEETTEE--CSSCCHHHHHHHHTT--CSEEEEEEECCSCCSSCSCCCCSSCS
T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhc--CCeEEEEEEECCccccccccccccce
Confidence 36899999999999999999999999999999 7764 455555543 5699999999998887777665 56
No 57
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=99.15 E-value=1.9e-10 Score=83.92 Aligned_cols=60 Identities=22% Similarity=0.308 Sum_probs=53.4
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhC-CCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKN-QGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~-~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +.+ ++++..++... .++++.|+|.|+++
T Consensus 58 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 121 (121)
T 2kom_A 58 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD--LVGKSQEEVVSLLRSTKMEGTVSLLVFRQED 121 (121)
T ss_dssp CCEEEEEECTTSHHHHHTCCCSSSEEEEETTEE--CTTSCHHHHHHHHHHCCSSCEEEEEEEECCC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--cCCCCHHHHHHHHhcCCCCCEEEEEEEeCCC
Confidence 468999999999999999 99999999999999 766 68999888874 58899999999763
No 58
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=99.15 E-value=2.1e-10 Score=79.26 Aligned_cols=59 Identities=22% Similarity=0.207 Sum_probs=50.0
Q ss_pred ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301 111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL 172 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~ 172 (195)
+++|..|.++|||+++||++||+|++|||.+ +. ++.++...+.. .+..+.++|.|++..
T Consensus 25 ~~~V~~V~~~spA~~aGl~~GD~I~~vng~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~ 85 (91)
T 2f5y_A 25 PVRVQAVDSGGPAERAGLQQLDTVLQLNERP--VEHWKCVELAHEIRS-CPSEIILLVWRMVPQ 85 (91)
T ss_dssp SCEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-CSSEEEEEEEECC--
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCCC
Confidence 4789999999999999999999999999999 77 46888888766 455899999998754
No 59
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=99.15 E-value=7.1e-11 Score=84.06 Aligned_cols=60 Identities=23% Similarity=0.316 Sum_probs=53.4
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL 172 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~ 172 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +.+ +.++..++.. .+.++.|+|.|++..
T Consensus 44 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~ 106 (108)
T 2jre_A 44 TGIYVKSLIPGSAAALDGRIEPNDKILRVDDVN--VQGMAQSDVVEVLRN-AGNPVRLLLIRRLPL 106 (108)
T ss_dssp CCCEEEEECTTSHHHHHSSCCSSEEEEEETTEE--CTTSCHHHHHHHHHH-HCSEEEEEEEECCCC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCcC
Confidence 478999999999999999 99999999999999 776 7888888876 678999999998753
No 60
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=99.15 E-value=1.5e-10 Score=80.81 Aligned_cols=61 Identities=21% Similarity=0.303 Sum_probs=52.3
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEEE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLI 173 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~ 173 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +.+ +.++...+... ++++.++|.|++...
T Consensus 30 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~R~~~~~ 93 (98)
T 2opg_A 30 GAIIIHEVYEEGAACKDGRLWAGDQILEVNGID--LRKATHDEAINVLRQT-PQRVRLTLYRDEAPY 93 (98)
T ss_dssp CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHTC-CSEEEEEEEECSSCC
T ss_pred CCEEEEEECCCChHHhCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEcCCCCC
Confidence 478999999999999999 99999999999999 765 67888777654 478999999987643
No 61
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=99.14 E-value=1.5e-10 Score=81.62 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=51.5
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +.+ +.++..++....+ ++.++|.|.+.
T Consensus 39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~-~v~l~v~r~~~ 100 (103)
T 2fcf_A 39 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMD--LRDASHEQAVEAIRKAGN-PVVFMVQSIIS 100 (103)
T ss_dssp --EEEEEECSSSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHTCCS-SEEEEEECCCC
T ss_pred CCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCC-cEEEEEEECCC
Confidence 468999999999999999 99999999999999 877 9999999987644 89999988653
No 62
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=99.14 E-value=2.2e-10 Score=79.73 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=52.2
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++| |++||+|++|||++ +. ++.++...+.. .++++.++|.|++.
T Consensus 33 ~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~ 94 (96)
T 1d5g_A 33 GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVS--LEGATHKQAVETLRN-TGQVVHLLLEKGQS 94 (96)
T ss_dssp SCCEEEEECTTSHHHHTTCCCTTCEEEEETTEE--CTTCCHHHHHHHHHS-CCSEEEEEEECCSC
T ss_pred CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEcCCC
Confidence 578999999999999999 99999999999999 76 67888888876 67899999998764
No 63
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=99.14 E-value=1.9e-10 Score=80.31 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=52.8
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL 172 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~ 172 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +. ++.++..++. ..++.+.++|.|+++.
T Consensus 30 ~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~-~~g~~v~l~v~R~~~~ 92 (97)
T 1n7e_A 30 DPIIISSLTKGGLAERTGAIHIGDRILAINSSS--LKGKPLSEAIHLLQ-MAGETVTLKIKKQTDA 92 (97)
T ss_dssp SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEE--CTTCCHHHHHHHHH-TCCSEEEEEEECCCCC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHH-cCCCeEEEEEEeCCCC
Confidence 468899999999999999 99999999999999 75 5789988887 5778999999998753
No 64
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=99.14 E-value=1.5e-10 Score=79.84 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=49.6
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++||++||+|++|||.+ +.+ +.++...+....+..+.+.+.|+++
T Consensus 27 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~~~~~~~~~r~~~ 88 (91)
T 1g9o_A 27 LGQYIRLVEPGSPAEKAGLLAGDRLVEVNGEN--VEKETHQQVVSRIRAALNAVRLLVVDPETD 88 (91)
T ss_dssp SSEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTCSSEEEEEEECCCCS
T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCCcEEEEEEcCCcc
Confidence 57899999999999999999999999999999 766 7888888887666555555555543
No 65
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=99.14 E-value=2.3e-10 Score=83.05 Aligned_cols=60 Identities=20% Similarity=0.296 Sum_probs=53.0
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL 172 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~ 172 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +. ++.++...+....+ ++.|+|.|+++.
T Consensus 53 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~-~v~l~v~R~g~~ 115 (117)
T 2fne_A 53 LPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQS--LEGVTHEEAVAILKRTKG-TVTLMVLSSDET 115 (117)
T ss_dssp EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHCCS-SEEEEEEECSCE
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCC-eEEEEEEeCCcc
Confidence 357899999999999999 99999999999999 77 89999998887544 699999998764
No 66
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=99.13 E-value=2.4e-10 Score=81.69 Aligned_cols=61 Identities=21% Similarity=0.314 Sum_probs=53.9
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhC-CCCeEEEEEEECCEE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKN-QGNAVPVVIMRQGGL 172 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~-~g~~v~l~V~R~g~~ 172 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +. +++++...+... .+..+.++|.|+++.
T Consensus 39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~ 103 (111)
T 2koj_A 39 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD--LAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEA 103 (111)
T ss_dssp SCEEEEEECSSSHHHHHCSSCTTCEEEEETTEE--CTTSCHHHHHHHHHHCCCSSEEEEEEEECCCC
T ss_pred cCEEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEeCCCC
Confidence 468999999999999999 99999999999999 74 468999988874 588999999998753
No 67
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=99.13 E-value=1.5e-10 Score=82.79 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=53.6
Q ss_pred CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhC--CCCeEEEEEEECCE
Q 029301 109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKN--QGNAVPVVIMRQGG 171 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~--~g~~v~l~V~R~g~ 171 (195)
..+++|..|.++|||+++| |++||+|++|||++ +.+ ++++..+++.. .+..+.|+|.|.+.
T Consensus 32 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~~~ 97 (108)
T 3cbz_A 32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMN--FENMSNDDAVRVLRDIVHKPGPIVLTVAKSGG 97 (108)
T ss_dssp CCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--TTSCCHHHHHHHHHHHHTSSSCEEEEEECCCC
T ss_pred CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhcccCCCeEEEEEEeCCC
Confidence 3568899999999999999 99999999999999 776 99999999875 45579999998764
No 68
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=99.13 E-value=2.6e-10 Score=79.57 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=50.6
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEEC
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQ 169 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~ 169 (195)
.+++|..|.++|||+++||++||+|++|||.+ +.+ ++++..++... +.++.++|.+.
T Consensus 37 ~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-~~~v~l~v~~~ 95 (96)
T 2ego_A 37 MVTFVARVHESSPAQLAGLTPGDTIASVNGLN--VEGIRHREIVDIIKAS-GNVLRLETLYG 95 (96)
T ss_dssp EEEEEEEECTTCHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHHT-TTEEEEEEECC
T ss_pred CCeEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEEC
Confidence 46789999999999999999999999999999 777 79999999876 45899988764
No 69
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.13 E-value=1.1e-10 Score=85.09 Aligned_cols=60 Identities=25% Similarity=0.266 Sum_probs=54.3
Q ss_pred ceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCC-CCeEEEEEEECCEE
Q 029301 111 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQ-GNAVPVVIMRQGGL 172 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~-g~~v~l~V~R~g~~ 172 (195)
.++|..|.++|||+++| |++||+|++|||++ +.+ ++++..++.... ++++.|+|.|++..
T Consensus 46 ~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~ 109 (122)
T 1v5q_A 46 PPLISYIEADSPAERCGVLQIGDRVMAINGIP--TEDSTFEEANQLLRDSSITSKVTLEIEFDVAE 109 (122)
T ss_dssp CCEEEEECTTSHHHHSCCCCTTCCEEEETTEE--SSSSCHHHHHHHHHHHTTTTCEEEEEEEECCC
T ss_pred CcEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEECCcc
Confidence 47899999999999999 99999999999999 876 999999998754 88999999998763
No 70
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=99.12 E-value=2.5e-10 Score=81.08 Aligned_cols=60 Identities=13% Similarity=0.265 Sum_probs=53.0
Q ss_pred CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.|+.+|..|.++|||+++||++||+|++|||.+ +. ++.++..++.. .++.+.++|.|.+.
T Consensus 42 ~p~~~V~~v~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~ 103 (107)
T 3qe1_A 42 APLQHVSAVLPGGAADRAGVRKGDRILEVNGVN--VEGATHKQVVDLIRA-GEKELILTVLSVES 103 (107)
T ss_dssp SCCEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHH-CSSEEEEEEECSSC
T ss_pred CCceEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCEEEEEEEcCCC
Confidence 466679999999999999999999999999999 77 88999998875 57899999998653
No 71
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=99.12 E-value=2.5e-11 Score=87.73 Aligned_cols=60 Identities=25% Similarity=0.226 Sum_probs=54.3
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC---cHHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN---LLERLAAEGRKNQGNAVPVVIMRQGGL 172 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~---~~~~l~~~l~~~~g~~v~l~V~R~g~~ 172 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +. ++.++...+.. .++.+.++|.|++..
T Consensus 49 ~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~--v~~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~ 112 (117)
T 2o2t_A 49 LGIFVQEIQEGSVAHRDGRLKETDQILAINGQA--LDQTITHQQAISILQK-AKDTVQLVIARGSLP 112 (117)
T ss_dssp EEEEECCCCTTSHHHHHCCCCTTCEEEEETTEE--CCTTSCHHHHHHHHHH-CCSEEEEEEESSCCG
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCCHHHHHHHHHc-CCCEEEEEEEeCCcc
Confidence 468899999999999999 99999999999999 87 89999998877 578999999998764
No 72
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=1.3e-10 Score=80.81 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=50.2
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
..++|..|.++|||+++||++||+|++|||++ +.+ +.++...+.. .++++.++|.|+++
T Consensus 32 ~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~ 92 (94)
T 2eeg_A 32 APLTISRVHAGSKAALAALCPGDLIQAINGES--TELMTHLEAQNRIKG-CHDHLTLSVSSGPS 92 (94)
T ss_dssp SCCEECCCCSSSHHHHTTCCTTCEEEEETTEE--TTTCCHHHHHHHHHT-CCSCEEEEEECCSS
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence 34789999999999999999999999999999 776 4677766665 67789999999764
No 73
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=99.12 E-value=3.4e-10 Score=99.32 Aligned_cols=71 Identities=23% Similarity=0.249 Sum_probs=65.0
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEeccCC
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQ 183 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~~~~ 183 (195)
.+++|.+|.++|||+++||++||+|++|||++ +.+|+++.++++...+ .+.++|.|+|+.+++.+.|..|.
T Consensus 363 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~--v~~~~~~~~~l~~~~~-~v~l~v~R~g~~~~~~~~~~~~~ 433 (436)
T 4a8c_A 363 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDR--VNSIAEMRKVLAAKPA-IIALQIVRGNESIYLLMRLEHHH 433 (436)
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhCCC-eEEEEEEECCEEEEEEEEecccC
Confidence 36889999999999999999999999999999 9999999999987544 89999999999999999998664
No 74
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.12 E-value=2.4e-10 Score=80.96 Aligned_cols=57 Identities=21% Similarity=0.166 Sum_probs=51.7
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECC
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g 170 (195)
.+++|..|.++|||+++||++||+|++|||.+ +.+ ++++..+++. ++++.|+|.|+.
T Consensus 41 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~--~~~v~l~v~r~~ 99 (104)
T 1wi2_A 41 LGIFISKVIPDSDAHRAGLQEGDQVLAVNDVD--FQDIEHSKAVEILKT--AREISMRVRFFS 99 (104)
T ss_dssp CCCEEEEECTTSHHHHHTCCTTCEEEEETTEE--CSSCCHHHHHHHHHH--SSSEEEEEECCC
T ss_pred CCEEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhC--CCEEEEEEEECC
Confidence 46889999999999999999999999999999 877 9999999887 678999998864
No 75
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=99.11 E-value=3e-10 Score=78.98 Aligned_cols=60 Identities=28% Similarity=0.326 Sum_probs=51.2
Q ss_pred CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.++++|..|.++|||+++| |++||+|++|||.+ +.+ +.++...+.. .+.++.++|.|+++
T Consensus 28 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~ 90 (95)
T 2vwr_A 28 EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHD--LKYGTPELAAQIIQA-SGERVNLTIARPGK 90 (95)
T ss_dssp SCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHH-CCSEEEEEEEEESC
T ss_pred CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCEEEEEEEcCCc
Confidence 3578999999999999999 99999999999999 654 6777776664 47899999999764
No 76
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=99.11 E-value=3.7e-10 Score=99.61 Aligned_cols=69 Identities=17% Similarity=0.284 Sum_probs=64.4
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR 180 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~ 180 (195)
.+++|.+|.++|||++|||++||+|++|||++ +.+|.++...+.. ..|+++.++|.|+|+..++++++.
T Consensus 282 ~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~--v~~~~~l~~~l~~~~~g~~v~l~V~R~g~~~~~~v~l~ 351 (451)
T 3pv2_A 282 QGALVSQVNPNSPAELAGLKAGDIITQINDTK--ITQATQVKTTISLLRVGSTVKIIVERDNKPLTLSAVVT 351 (451)
T ss_dssp CCEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CCSHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECB
T ss_pred ceEEEEecCCCChHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEc
Confidence 57899999999999999999999999999999 9999999999886 678999999999999999888765
No 77
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=99.11 E-value=3e-10 Score=80.00 Aligned_cols=61 Identities=28% Similarity=0.336 Sum_probs=53.3
Q ss_pred CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301 109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL 172 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~ 172 (195)
..+++|..|.++|||+++| |++||+|++|||.+ +.+ +.++...+.. .+.++.++|.|++..
T Consensus 33 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~~ 96 (102)
T 2i1n_A 33 DPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVD--VSEVVHSRAVEALKE-AGPVVRLVVRRRQPP 96 (102)
T ss_dssp CCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CSSCCHHHHHHHHHH-SCSEEEEEEEEECCC
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCCC
Confidence 3578999999999999999 99999999999999 755 8888888876 578999999997754
No 78
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=99.10 E-value=2.8e-10 Score=89.20 Aligned_cols=61 Identities=25% Similarity=0.293 Sum_probs=55.2
Q ss_pred CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCC-CCeEEEEEEECCE
Q 029301 109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQ-GNAVPVVIMRQGG 171 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~-g~~v~l~V~R~g~ 171 (195)
..+++|..|.++|||++|| |++||+|++|||++ +. +|.++..++.... +.++.++|.|+++
T Consensus 35 ~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 99 (196)
T 1p1d_A 35 SSPPLISYIEADSPAERCGVLQIGDRVMAINGIP--TEDSTFEEANQLLRDSSITSKVTLEIEFDVA 99 (196)
T ss_dssp SCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBC--STTSCHHHHHHHHHTCCSSSEEEEEEEECSC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEecCC
Confidence 4568999999999999999 99999999999999 87 7999999998754 8899999999884
No 79
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=99.10 E-value=6.3e-11 Score=84.07 Aligned_cols=59 Identities=29% Similarity=0.387 Sum_probs=51.3
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++||++||+|++|||.+ +.++ .++...+.. .+.++.++|.|++.
T Consensus 26 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~ 86 (106)
T 3ngh_A 26 DGHLIRVIEEGSPAEKAGLLDGDRVLRINGVF--VDKEEHAQVVELVRK-SGNSVTLLVLDGDS 86 (106)
T ss_dssp CSCEEECCCTTSHHHHTTCCTTCEEEEETTEE--CTTSCHHHHHHHHHH-TTTEEEEEEECHHH
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCEEEEEEEECCe
Confidence 46889999999999999999999999999999 6655 488888874 57799999998764
No 80
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.10 E-value=4.2e-10 Score=82.14 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=54.0
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhC-CCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKN-QGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~-~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++| |++||+|++|||++ +. ++.++..++... .++.+.|+|.|++.
T Consensus 44 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 107 (123)
T 1ueq_A 44 EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVC--VLGHTHADVVKLFQSVPIGQSVNLVLCRGYP 107 (123)
T ss_dssp CCCEEEEECTTSHHHHTSCCCTTCEEEEETTEE--CTTSCHHHHHHHHHTSCTTCEEEEEEEESCC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEeCCC
Confidence 458899999999999999 99999999999999 76 789999999875 48899999999764
No 81
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=99.10 E-value=2.7e-10 Score=80.30 Aligned_cols=59 Identities=24% Similarity=0.310 Sum_probs=52.7
Q ss_pred CCceEEEEEcCCChhhh-cCCCCCCEEEEECCeeCCC--CcHHHHHHHHhhC-CCCeEEEEEEEC
Q 029301 109 RPFAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGD--NLLERLAAEGRKN-QGNAVPVVIMRQ 169 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~-aGL~~GD~I~~ing~~~~v--~~~~~l~~~l~~~-~g~~v~l~V~R~ 169 (195)
.++++|..|.++|||++ +||++||+|++|||++ + .+++++..++... .++.+.|+|.|.
T Consensus 36 ~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 98 (101)
T 2yt7_A 36 LPTAVIANLLHGGPAERSGALSIGDRLTAINGTS--LVGLPLAACQAAVRETKSQTSVTLSIVHC 98 (101)
T ss_dssp SCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCB--CTTSCHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred ccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence 35689999999999999 6799999999999999 8 8999999999874 788999998874
No 82
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=99.10 E-value=4.1e-10 Score=77.93 Aligned_cols=58 Identities=24% Similarity=0.351 Sum_probs=50.0
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g 170 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +.+ +.++...+... +.++.++|.|++
T Consensus 33 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~R~g 93 (94)
T 2fe5_A 33 NSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTN--LQDVRHEEAVASLKNT-SDMVYLKVAKPG 93 (94)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCBHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEcCC
Confidence 468999999999999999 99999999999999 765 67877777654 458999999876
No 83
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=99.10 E-value=1.9e-10 Score=78.89 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=47.8
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhh-CCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRK-NQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~-~~g~~v~l~V~R~g~ 171 (195)
.+.+|..| ++|||+ +||++||+|++|||.+ +.++ +++...+.. ..++++.++|.|+++
T Consensus 27 ~~~~v~~v-~~spA~-aGl~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 87 (88)
T 3bpu_A 27 GGQRVKQI-VDSPRS-RGLKEGDLIVEVNKKN--VQALTHNQVVDMLVESPKGSEVTLLVQRQTR 87 (88)
T ss_dssp SSEEEEEC-CC--CC-TTCCTTCEEEEETTEE--CTTSCHHHHHHHHHTSCTTCEEEEEEEEECC
T ss_pred CcEEEEEe-cCChhH-hCCCCCCEEEEECCEE--cCCCCHHHHHHHHHhCCCCCEEEEEEEeCCc
Confidence 45677776 999999 9999999999999999 7765 899888875 578899999999764
No 84
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=99.10 E-value=2.3e-10 Score=79.43 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=49.4
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++||++||+|++|||.+ +.++ .++..++... +..+.+.+.|.+.
T Consensus 29 ~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-~~~~~~~~~r~~~ 89 (95)
T 3r68_A 29 KGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKS--VEALDHDGVVEMIRKG-GDQTTLLVLDKEL 89 (95)
T ss_dssp CSEEEECCCTTSHHHHHTCCTTEEEEEETTEE--CTTCCHHHHHHHHHTT-TTEEEEEEEECC-
T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEECCcc
Confidence 36889999999999999999999999999999 7776 9999998874 4566666666543
No 85
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.10 E-value=5.7e-10 Score=87.75 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=60.7
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc----HHHHHHHHhhCCCCeEEEEEEECCEEE--EEEEEeccC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL----LERLAAEGRKNQGNAVPVVIMRQGGLI--NLAVTPRPW 182 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~----~~~l~~~l~~~~g~~v~l~V~R~g~~~--~~~l~~~~~ 182 (195)
.+++|..|.++|||+++| |++||+|++|||++ +.+ +.++...+....+..+.++|.|++... .+++....+
T Consensus 45 ~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~~~~~~v~l~~~ 122 (206)
T 3r0h_A 45 TGCVITHVYPEGQVAADKRLKIFDHICDINGTP--IHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKK 122 (206)
T ss_dssp SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CCGGGSCHHHHHHHHHSCCSSEEEEEEECCSSCCEEEEEEEEECC
T ss_pred CCeEEEEECCCChHHhcCCCCCCCEEEEECCEE--cCCCccCHHHHHHHHHhcCCCceEEEEEecccCCCcEEEEEEecC
Confidence 578999999999999998 99999999999999 777 778877776655555999999987543 344433322
Q ss_pred CCceeeeEEEE
Q 029301 183 QGRGLLGCHFR 193 (195)
Q Consensus 183 ~~~~~lGi~l~ 193 (195)
.. ..||+.+.
T Consensus 123 ~~-~~lG~~~~ 132 (206)
T 3r0h_A 123 AG-KELGLSLS 132 (206)
T ss_dssp TT-CCCCEEEE
T ss_pred CC-CccCeEEE
Confidence 22 34676553
No 86
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.10 E-value=8.3e-11 Score=84.18 Aligned_cols=69 Identities=32% Similarity=0.429 Sum_probs=56.0
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEeccC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPW 182 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~~~ 182 (195)
.+++|..|.++|||+++| |++||+|++|||++ +. ++.++..++.. .++.+.|+|.|++.. ....+|..|
T Consensus 38 ~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~-~~~~~~~~~ 109 (111)
T 2dlu_A 38 SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTN--VQGMTSEQVAQVLRN-CGNSVRMLVARDPAG-DISVTSGPS 109 (111)
T ss_dssp SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCC--CTTSCHHHHHHHHHH-HCSEEEEEEEESCTT-CCCCCCCTT
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEEeCCCC-ccCCCCCCC
Confidence 468999999999999999 99999999999999 76 57888888876 467899999997654 333334344
No 87
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=2.3e-10 Score=80.81 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=51.7
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +.+ +.++...+.. .+.++.|+|.|+++
T Consensus 38 ~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~ 99 (104)
T 2djt_A 38 TPLAVRGLLKDGPAQRCGRLEVGDLVLHINGES--TQGLTHAQAVERIRA-GGPQLHLVIRRPLS 99 (104)
T ss_dssp CCCEEEEECTTCHHHHHCSCCTTCBEEEETTEE--CTTCCHHHHHHHHHH-TCSEEEEEECCCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECCC
Confidence 457899999999999999 99999999999999 765 6788877776 67899999999875
No 88
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.09 E-value=1.6e-10 Score=81.74 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=52.6
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCC-CCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQ-GNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~-g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++| |++||+|++|||++ +. ++.++..++.... +..+.|+|.|++.
T Consensus 34 ~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 97 (103)
T 1uep_A 34 QPILIGAVIAMGSADRDGRLHPGDELVYVDGIP--VAGKTHRYVIDLMHHAARNGQVNLTVRRKVL 97 (103)
T ss_dssp SCCBEEEECTTSTTGGGTCCCTTCEEEEETTEE--CTTSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred CCeEEEEeCCCChHHhCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCcEEEEEEeCCC
Confidence 457899999999999999 99999999999999 74 5899999888754 7899999998754
No 89
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=99.09 E-value=2.6e-10 Score=78.41 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=50.5
Q ss_pred ceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCC--CcHHHHHHHHhhCC-CCeEEEEEEECC
Q 029301 111 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQ-GNAVPVVIMRQG 170 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~-g~~v~l~V~R~g 170 (195)
+++|..|.++|||+++| |++||+|++|||.+ + .++.++...+.... +.++.++|.|..
T Consensus 28 ~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~~~~v~l~v~R~~ 89 (90)
T 2q9v_A 28 PIYIGHIVPLGAADTDGRLRSGDELISVDGTP--VIGKSHQLVVQLMQQAAKQGHVNLTVRQTR 89 (90)
T ss_dssp CEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTSCHHHHHHHHHHHHHHTEEEEEEEECC
T ss_pred CEEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEecc
Confidence 37899999999999999 99999999999999 7 67999998887643 458999998853
No 90
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=99.09 E-value=2.2e-10 Score=80.61 Aligned_cols=57 Identities=12% Similarity=0.297 Sum_probs=50.2
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEEC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQ 169 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~ 169 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +.+ |+++..++... +.++.++|.+.
T Consensus 36 ~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~--v~~~~~~~~~~~l~~~-~~~v~L~V~~~ 95 (97)
T 2ejy_A 36 QSCTVARILHGGMIHRQGSLHVGDEILEINGTN--VTNHSVDQLQKAMKET-KGMISLKVIPN 95 (97)
T ss_dssp CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBC--CCSSCSHHHHHHHHHC-CEEEEEEEECC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 468999999999999999 99999999999999 875 99999999875 55788887754
No 91
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=99.08 E-value=4e-10 Score=81.71 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=52.7
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +. ++.++...+... +..+.|+|.|++.
T Consensus 54 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~-g~~v~l~v~R~~~ 115 (117)
T 2byg_A 54 NSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYS--LEEVTHEEAVAILKNT-SEVVYLKVGKPTT 115 (117)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHTC-CSEEEEEEEEEEE
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEeCCc
Confidence 468999999999999999 99999999999999 76 789998888754 7899999999764
No 92
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.08 E-value=3.7e-10 Score=78.24 Aligned_cols=54 Identities=11% Similarity=0.188 Sum_probs=48.3
Q ss_pred EEEEEcCCChhhhcCCCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEEEC
Q 029301 113 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQ 169 (195)
Q Consensus 113 ~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~R~ 169 (195)
+|.+|.++|||+++||++||+|++|||.+ + .++.++..++... ++++.++|.+.
T Consensus 34 ~V~~V~~~spA~~aGL~~GD~Il~Ing~~--v~~~~~~~~~~~l~~~-g~~v~l~v~p~ 89 (90)
T 1y7n_A 34 IICSLMRGGIAERGGVRVGHRIIEINGQS--VVATPHEKIVHILSNA-VGEIHMKTMPA 89 (90)
T ss_dssp EEEEECTTSHHHHHTCCSSCEEEEETTEE--CTTSCHHHHHHHHHHC-CEEEEEEEECC
T ss_pred EEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 89999999999999999999999999999 7 5899999999854 67888888754
No 93
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=99.08 E-value=1e-10 Score=84.22 Aligned_cols=66 Identities=26% Similarity=0.330 Sum_probs=56.0
Q ss_pred CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEEEEEEE
Q 029301 109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLINLAV 177 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l 177 (195)
..+++|..|.++|||+++||++||+|++|||++ +.+ +.++...+... |+++.++|.|+++..++.+
T Consensus 37 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-g~~v~l~v~R~~~~~~~~~ 104 (114)
T 2edz_A 37 TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVF--VDKEEHAQVVELVRKS-GNSVTLLVLDGDSYEKAVK 104 (114)
T ss_dssp CCSCEEECCCTTCTTGGGTCCTTCEEEEESSSB--CSSSCHHHHHHHHHHT-CSEEEEEEECHHHHHHHHH
T ss_pred CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCEEEEEEEECCcceehhh
Confidence 356899999999999999999999999999999 765 68998888764 8899999999876544433
No 94
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.08 E-value=3.6e-10 Score=80.11 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=52.4
Q ss_pred CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECC
Q 029301 109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g 170 (195)
..+++|..|.++|||+++| |++||+|++|||.+ +.+ +.++..++... +..+.|+|.|++
T Consensus 37 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~l~~~-g~~v~l~v~R~~ 98 (105)
T 1wha_A 37 DAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVD--VTEARHDHAVSLLTAA-SPTIALLLEREA 98 (105)
T ss_dssp CCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCB--CTTCCHHHHHHHHTSC-CSCEEEEEEECC
T ss_pred CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence 3578999999999999999 99999999999999 766 89998888765 778999999975
No 95
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=99.08 E-value=5.2e-11 Score=85.51 Aligned_cols=69 Identities=17% Similarity=0.127 Sum_probs=58.2
Q ss_pred CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 029301 109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR 180 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~ 180 (195)
..+++|..|.++|||+++| |++||+|++|||.+ +. ++.++..++... ++.+.++|.|++...+++++|.
T Consensus 34 ~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-g~~v~l~v~R~~~~~~~~v~p~ 105 (113)
T 2g5m_B 34 KLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTS--LVGVTQSFAASVLRNT-KGRVRFMIGRERPGEQSEVAQL 105 (113)
T ss_dssp CEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEE--CSSCCHHHHHHHHHHS-CSSCEEEEEECCCCTTSSCSSC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhcC-CCeEEEEEEeCCCCCcchhhhh
Confidence 3568899999999999999 99999999999999 65 477777777764 7889999999987766666553
No 96
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.08 E-value=2.9e-10 Score=81.44 Aligned_cols=60 Identities=20% Similarity=0.311 Sum_probs=53.7
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCC---CCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQ---GNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~---g~~v~l~V~R~g~ 171 (195)
+.++|..|.++|||+++| |++||+|++|||++ +.+ ++++..+|+... +.++.|.+.|++.
T Consensus 41 ~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~--~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R~~~ 106 (109)
T 1wi4_A 41 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKES--MIGVSFEEAKSIITRAKLRSESPWEIAFIRSGP 106 (109)
T ss_dssp SSEEEEEECTTSHHHHHCSCCTTCBEEEETTSC--CTTCCHHHHHHHHHHSCCSSSSCEEEEEECCCC
T ss_pred CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHccccCCCceEEEEEEeCCC
Confidence 458899999999999999 99999999999999 655 999999998876 8899999998764
No 97
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=99.08 E-value=1e-09 Score=78.10 Aligned_cols=59 Identities=22% Similarity=0.329 Sum_probs=51.4
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|.+|.++|||+++| |++||+|++|||.+ + .++.++...+.. .+.++.++|.|++.
T Consensus 32 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~ 93 (106)
T 4amh_A 32 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVA--LEEVTHEEAVTALKN-TSDFVYLKVAKPGS 93 (106)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CSSCCHHHHHHHHHS-CCSEEEEEEECCSS
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhC-CCCeEEEEEEeCCC
Confidence 468999999999999999 99999999999999 6 458888888865 45699999999764
No 98
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=99.08 E-value=4.5e-10 Score=80.11 Aligned_cols=57 Identities=16% Similarity=0.297 Sum_probs=50.3
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEEC
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQ 169 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~ 169 (195)
++++|..|.++|||+++||++||+|++|||++ +.++ .++...+... +..+.++|.|.
T Consensus 45 ~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~--v~~~~~~~~~~~l~~~-~~~v~l~v~~~ 103 (109)
T 1q3o_A 45 ALQYLESVDEGGVAWRAGLRMGDFLIEVNGQN--VVKVGHRQVVNMIRQG-GNTLMVKVVMV 103 (109)
T ss_dssp SSEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHHT-TTEEEEEEEEE
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCEEEEEEEEC
Confidence 36899999999999999999999999999999 8777 8998888764 67888888763
No 99
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.07 E-value=7.2e-10 Score=86.03 Aligned_cols=79 Identities=23% Similarity=0.285 Sum_probs=57.2
Q ss_pred CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHH--HHHhhCCCCeEEEEEEECC--EEEEEEEEeccCC
Q 029301 109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLA--AEGRKNQGNAVPVVIMRQG--GLINLAVTPRPWQ 183 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~--~~l~~~~g~~v~l~V~R~g--~~~~~~l~~~~~~ 183 (195)
.++++|..|.|+|||+++| |++||+|++|||++ +.+|.+.. ..+. ..+..+.++|.|++ ....+++....+.
T Consensus 34 ~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~-~~g~~v~l~v~r~~~~~~~~~~v~l~~~~ 110 (196)
T 3gsl_A 34 DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD--VREVTHSAAVEALK-EAGSIVRLYVMRRKPPAEKVMEIKLIKGP 110 (196)
T ss_dssp CCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHH-TSCSEEEEEEEEECCCCEEEEEEEEEEBT
T ss_pred CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHH-hCCCcEEEEEEecCCCccccEEEEEecCC
Confidence 4578999999999999999 99999999999999 87764443 3333 45789999999976 3344444433332
Q ss_pred CceeeeEEE
Q 029301 184 GRGLLGCHF 192 (195)
Q Consensus 184 ~~~~lGi~l 192 (195)
. .+|+.+
T Consensus 111 ~--~lG~~~ 117 (196)
T 3gsl_A 111 K--GLGFSI 117 (196)
T ss_dssp T--BSCEEE
T ss_pred C--CceEEE
Confidence 2 455554
No 100
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=99.07 E-value=4.9e-10 Score=81.99 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=51.9
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g 170 (195)
.+++|..|.++|||++|| |++||+|++|||.+ +.+ ++++...+.... .++.++|.|..
T Consensus 59 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~-~~v~l~v~r~~ 119 (123)
T 2iwq_A 59 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMD--LRDASHEQAVEAIRKAG-NPVVFMVQSII 119 (123)
T ss_dssp CSEEEEEECSSSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHCC-SSEEEEEECCC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCC-CeEEEEEEECC
Confidence 468999999999999999 99999999999999 877 999999998764 48999998854
No 101
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=99.07 E-value=3.1e-10 Score=78.79 Aligned_cols=58 Identities=12% Similarity=0.237 Sum_probs=47.9
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++||++||+|++|||++ +.++ .++...++ .++++.|+|.|++.
T Consensus 29 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~~~--~g~~v~l~v~R~~~ 88 (93)
T 2dls_A 29 RIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTM--VTNSSHLEVVKLIK--SGAYVALTLLGSSS 88 (93)
T ss_dssp SSCEEEEECSSSTTTTTTCCSSCEEEEETTEE--CSSSCHHHHHHHHT--SSSEEEEEEECCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHhhc--CCCEEEEEEEECCC
Confidence 46889999999999999999999999999999 6664 34444443 58899999999753
No 102
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.07 E-value=2.9e-10 Score=81.86 Aligned_cols=59 Identities=25% Similarity=0.271 Sum_probs=53.2
Q ss_pred ceEEEEEcCCChhhh-cCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301 111 FAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL 172 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~-aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~ 172 (195)
.++|..|.++|||++ +||++||+|++|||.+ +.+ ++++..++.. .+..+.|+|.|+++.
T Consensus 44 ~~~V~~V~~~spA~~~agL~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~~ 105 (114)
T 1uew_A 44 PHKIGRIIDGSPADRCAKLKVGDRILAVNGQS--IINMPHADIVKLIKD-AGLSVTLRIIPQEEL 105 (114)
T ss_dssp SCEEEEECTTCTTGGGSSCCTTCBEEEETTBC--TTTSCHHHHHHHHHH-TTTEEEEEECCCSCC
T ss_pred CeEEEEECCCChHHHhCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCcC
Confidence 368999999999999 9999999999999999 777 7999999987 788999999998753
No 103
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=99.07 E-value=1.4e-10 Score=78.66 Aligned_cols=56 Identities=25% Similarity=0.275 Sum_probs=48.8
Q ss_pred ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEEC
Q 029301 111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQ 169 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~ 169 (195)
+++|..|.++|||+++||++||+|++|||.+ +.++ .++...+... +..+.++|.|+
T Consensus 24 ~~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-~~~v~l~v~R~ 81 (83)
T 2kv8_A 24 PCVLSCVMRGSPADFVGLRAGDQILAVNEIN--VKKASHEDVVKLIGKC-SGVLHMVIAEG 81 (83)
T ss_dssp SCBCCBCCTTSTTTTTTCCTTCEEEEETTEE--CSSCCHHHHHHHHTTC-SSCEEEEEECC
T ss_pred CeEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEcC
Confidence 4788999999999999999999999999999 7777 8888887654 46799999885
No 104
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=99.07 E-value=6.2e-10 Score=79.92 Aligned_cols=60 Identities=17% Similarity=0.260 Sum_probs=51.5
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL 172 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~ 172 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +.+ +.++...+.. .+.++.|+|.|++..
T Consensus 49 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~ 111 (112)
T 2r4h_A 49 MDLYVLRLAEDGPAERSGKMRIGDEILEINGET--TKNMKHSRAIELIKN-GGRRVRLFLKRGETS 111 (112)
T ss_dssp CCEEEEEECTTSHHHHTTCCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-TTTEEEEEEECCEEE
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCcc
Confidence 468899999999999999 99999999999999 654 6777777765 577899999997653
No 105
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.07 E-value=8.3e-10 Score=75.99 Aligned_cols=57 Identities=23% Similarity=0.264 Sum_probs=47.7
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEEC
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQ 169 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~ 169 (195)
.+++|..|.++|||+++||++||+|++|||++ +.++ .++...+. ..++.+.++|.|+
T Consensus 32 ~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~--v~~~~~~~~~~~~~-~~g~~v~l~v~R~ 90 (91)
T 1m5z_A 32 KGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVR--TRDFDCCLVVPLIA-ESGNKLDLVISRN 90 (91)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHH-TSTTEEEEEEEEC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHH-cCCCEEEEEEEeC
Confidence 57889999999999999999999999999999 7764 44445554 3578899999885
No 106
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.06 E-value=2.6e-10 Score=80.32 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=51.8
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++||++||+|++|||.+ +.+ +.++...+.. .++++.++|.|++.
T Consensus 30 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~ 90 (102)
T 2d90_A 30 KGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKS--VEALDHDGVVEMIRK-GGDQTTLLVLDKEA 90 (102)
T ss_dssp SSEEEECCCTTSTTTTTTCCTTCEEEEESSCB--CTTSCHHHHHHHHHH-STTEEEEEECSTTC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCEEEEEEEECCC
Confidence 56899999999999999999999999999999 766 6888888876 47799999988654
No 107
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.06 E-value=1.1e-10 Score=84.46 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=54.5
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHh-hCCCCeEEEEEEECCEEEEEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGR-KNQGNAVPVVIMRQGGLINLA 176 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~-~~~g~~v~l~V~R~g~~~~~~ 176 (195)
.+++|..|.++|||+++||++||+|++|||++ +.++.++...+. ...++++.++|.|+++.+++.
T Consensus 42 ~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~--v~~~~~~~~~~~~~~~g~~v~l~v~r~~~~~~~~ 107 (117)
T 1uit_A 42 GGIYVSKVTVGSIAHQAGLEYGDQLLEFNGIN--LRSATEQQARLIIGQQCDTITILAQYNPHVHQLS 107 (117)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEECEETTEE--TTTCCHHHHHHHTTSCCSEEEEEECCCSCCCCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCCeEEEEEEECCchhhhh
Confidence 46889999999999999999999999999999 888776665543 356889999999988765443
No 108
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.06 E-value=3.2e-10 Score=83.24 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=55.4
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEEE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLI 173 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~ 173 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +.+ ++++..++.. .+..+.|+|.|++...
T Consensus 46 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~ 109 (129)
T 2dmz_A 46 SGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVN--IQGFANHDVVEVLRN-AGQVVHLTLVRRKTSS 109 (129)
T ss_dssp CEEEEEEECTTSHHHHHTCCCSSCBEEEETTBC--CTTCCHHHHHHHHHH-CCSSEEEEEEEESSSS
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCccc
Confidence 568899999999999999 99999999999999 877 9999999988 7889999999987643
No 109
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.06 E-value=2.3e-10 Score=80.51 Aligned_cols=58 Identities=22% Similarity=0.261 Sum_probs=50.0
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECC
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g 170 (195)
.+++|..|.++|||+++||++||+|++|||++ +. ++.++..++.... ..+.++|.|++
T Consensus 36 ~~~~V~~V~~~spA~~aGL~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~-~~v~l~v~R~~ 95 (100)
T 1whd_A 36 SPVRVQAVDSGGPAERAGLQQLDTVLQLNERP--VEHWKCVELAHEIRSCP-SEIILLVWRVS 95 (100)
T ss_dssp SSCBCCBCCTTSHHHHHTCCSSCEEEEETTEE--CTTCCHHHHHHHHHHCS-SEEEEEEEECC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCC-CeEEEEEEECC
Confidence 34778999999999999999999999999999 77 5789988887754 46999999875
No 110
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.05 E-value=1.9e-10 Score=84.74 Aligned_cols=58 Identities=24% Similarity=0.394 Sum_probs=53.1
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCC--CcHHHHHHHHhh-CCCCeEEEEEEEC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRK-NQGNAVPVVIMRQ 169 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v--~~~~~l~~~l~~-~~g~~v~l~V~R~ 169 (195)
.+++|..|.++|||++|| |++||+|++|||.+ + .+++++..++.. ..|+++.|+|.|+
T Consensus 49 ~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~--v~~~s~~d~~~~l~~~~~G~~v~l~V~R~ 110 (126)
T 1wif_A 49 PYLQISHLINKGAAASDGILQPGDVLISVGHAN--VLGYTLREFLKLLQNITIGTVLQIKAYRG 110 (126)
T ss_dssp TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSC--CTTCCHHHHHHHHTSCCSSCEEEEEEESS
T ss_pred CcEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--cCCCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence 457899999999999999 99999999999999 8 489999999987 5689999999997
No 111
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=99.05 E-value=5.1e-10 Score=78.64 Aligned_cols=59 Identities=24% Similarity=0.237 Sum_probs=50.8
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +.+ +.++...+.. .++.+.++|.|++.
T Consensus 37 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~ 98 (101)
T 2jik_A 37 SGIYVSRIKENGAAALDGRLQEGDKILSVNGQD--LKNLLHQDAVDLFRN-AGYAVSLRVQHRLE 98 (101)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CSSCCHHHHHHHHHT-CCSEEEEEEEEESC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEEeCCC
Confidence 468899999999999999 99999999999999 765 5787777765 47789999998764
No 112
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=99.05 E-value=6.7e-10 Score=76.92 Aligned_cols=58 Identities=17% Similarity=0.285 Sum_probs=51.4
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEEECC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~R~g 170 (195)
..++|..|.++|||+++| |++||+|++|||.+ + .+++++..+++...+ .+.++|.|..
T Consensus 28 ~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~-~v~l~v~~~~ 88 (93)
T 3o46_A 28 GAIIVARIMRGGAADRSGLIHVGDELREVNGIP--VEDKRPEEIIQILAQSQG-AITFKIIPGS 88 (93)
T ss_dssp CCEEEEEECTTSHHHHHTCCCTTCEEEEETTEE--STTSCHHHHHHHHHHCCE-EEEEEEECC-
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCC-eEEEEEEeCC
Confidence 467899999999999999 99999999999999 7 889999999987665 8888888754
No 113
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=4.7e-10 Score=77.67 Aligned_cols=58 Identities=21% Similarity=0.179 Sum_probs=51.5
Q ss_pred CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCC-CcHHHHHHHHhhCCCCeEEEEEEEC
Q 029301 109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD-NLLERLAAEGRKNQGNAVPVVIMRQ 169 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v-~~~~~l~~~l~~~~g~~v~l~V~R~ 169 (195)
..+++|..|.++|||+++| |++||+|++|||++ + .+++++..++... +.++.++|.|.
T Consensus 28 ~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~--v~~~~~~~~~~l~~~-~~~v~l~v~~~ 87 (91)
T 2e7k_A 28 GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQP--VGSDPRALQELLRNA-SGSVILKILSG 87 (91)
T ss_dssp SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEE--CTTCHHHHHHHHHTC-CSSBCEEEECC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 3568899999999999987 99999999999999 8 8999999999874 56888888874
No 114
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=99.05 E-value=6.7e-10 Score=81.76 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=53.3
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCC-CCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQ-GNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~-g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++| |++||+|++|||++ +. ++.++..++.... ++.+.|+|.|++.
T Consensus 43 ~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 106 (129)
T 2kpk_A 43 EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTC--VLGHTHAQVVKIFQSIPIGASVDLELCRGYP 106 (129)
T ss_dssp EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEE--CTTSCHHHHHHHHHHSCTTEEEEEEEEECSC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEeCCC
Confidence 347899999999999999 99999999999999 76 5889999998864 8899999999763
No 115
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.05 E-value=2e-10 Score=82.71 Aligned_cols=56 Identities=13% Similarity=0.157 Sum_probs=51.0
Q ss_pred ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEE
Q 029301 111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMR 168 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R 168 (195)
.++|..|.++|||++|||++||+|++|||++ +. +|+++..++....++++.|+|.|
T Consensus 37 ~v~V~~V~~~spA~~aGL~~GD~Il~InG~~--v~~~~~~d~~~~i~~~~~~~v~l~V~~ 94 (111)
T 1vae_A 37 PVQVHFLDPHCSASLAGAKEGDYIVSIQGVD--CKWLTVSEVMKLLKSFGGEEVEMKVVS 94 (111)
T ss_dssp SCEECCCCTTSSHHHHHCCTTCEEEEETTEE--CSSCCHHHHHHHHHHTTTSEECEEEEC
T ss_pred CEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCceEEEEEEe
Confidence 4678999999999999999999999999999 88 99999999988777788888876
No 116
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=99.04 E-value=8.2e-10 Score=81.63 Aligned_cols=59 Identities=25% Similarity=0.284 Sum_probs=53.0
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhC-CCCeEEEEEEECC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKN-QGNAVPVVIMRQG 170 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~-~g~~v~l~V~R~g 170 (195)
++++|..|.++|||+++| |++||+|++|||++ +. +++++..++... .+..+.|+|.|++
T Consensus 65 ~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 127 (131)
T 1wfg_A 65 LCAFITKVKKGSLADTVGHLRPGDEVLEWNGRL--LQGATFEEVYNIILESKPEPQVELVVSRSG 127 (131)
T ss_dssp EEEEEEEECTTSHHHHTSCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHTSSSSEEEEEEEEEC
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhcCCCCEEEEEEEcCC
Confidence 478899999999999999 99999999999999 64 579999999875 6789999999865
No 117
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.04 E-value=3.4e-10 Score=81.91 Aligned_cols=60 Identities=20% Similarity=0.187 Sum_probs=52.4
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL 172 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~ 172 (195)
++++|..|.++|||+++| |++||+|++|||.+ +.+ +.++..++.. .+..+.|+|.|++..
T Consensus 49 ~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~ 111 (117)
T 1ujd_A 49 IGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIP--LTSKTYEEVQSIISQ-QSGEAEICVRLDLNM 111 (117)
T ss_dssp EEEEEEEECTTCHHHHHSSCCTTCEEEEETTEE--CTTCCHHHHHHHHSC-CSSCEEEEEESSCCC
T ss_pred cCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--cCCCCHHHHHHHHhc-CCCEEEEEEEECCcc
Confidence 368899999999999999 99999999999999 654 8888888876 567899999998753
No 118
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=99.04 E-value=8.9e-10 Score=76.42 Aligned_cols=59 Identities=25% Similarity=0.390 Sum_probs=50.8
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +.+ +.++...+.. .+.++.++|.|++.
T Consensus 33 ~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~r~g~ 94 (97)
T 2iwn_A 33 SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTN--LQGFTNQQAVEVLRH-TGQTVLLTLMRRGE 94 (97)
T ss_dssp CCCEEEEECTTCHHHHHCCCCTTCEEEEETTEE--CTTSCHHHHHHHHHT-CCSEEEEEEEEEEE
T ss_pred CCEEEEEeCCCChHHhCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence 468899999999999999 99999999999999 664 5777777765 77899999998764
No 119
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.04 E-value=1.6e-10 Score=81.38 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=48.9
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++||++||+|++|||++ +.++.+. .++.. ..++++.++|.|+++
T Consensus 35 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~-~~~~~~~~~~~v~l~v~R~g~ 94 (101)
T 1uez_A 35 VGIYVSLVEPGSLAEKEGLRVGDQILRVNDKS--LARVTHA-EAVKALKGSKKLVLSVYSAGR 94 (101)
T ss_dssp CCEEEEEECTTSHHHHHTCCSSCCEEEETTEE--CSSCCHH-HHHHHSSSSSSCCEEECCCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCcCHH-HHHHhhcCCCeEEEEEEECCc
Confidence 46889999999999999999999999999999 8877663 33333 456688999998875
No 120
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.04 E-value=4.2e-10 Score=81.49 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=55.2
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEEEE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLIN 174 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~~~ 174 (195)
.+++|..|.++|||+++| |++||+|++|||++ +. ++.++...+....+..+.+++.|++...+
T Consensus 42 ~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~--v~~~~~~~~~~~l~~~~~~~~~l~v~R~~~~~~ 107 (119)
T 1x6d_A 42 KVITVHRVFPNGLASQEGTIQKGNEVLSINGKS--LKGTTHHDALAILRQAREPRQAVIVTRKLTPEA 107 (119)
T ss_dssp SSCEEEEECSSSHHHHHTSSCTTCBCCEETTEE--CSSCCHHHHHHHHHHTTSSSEEEEEEECCCSSS
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCeEEEEEEcCCCccc
Confidence 568999999999999999 99999999999999 76 69999999988777777788899876543
No 121
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=99.04 E-value=3.9e-10 Score=80.02 Aligned_cols=60 Identities=25% Similarity=0.288 Sum_probs=50.7
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGL 172 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~ 172 (195)
.+++|..|.++|||+ +||++||+|++|||++ +.++.++...+.. ..++++.++|.|+++.
T Consensus 39 ~gv~V~~V~~~spA~-agl~~GD~I~~vng~~--v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~ 99 (107)
T 2h2b_A 39 TSIVISDVLKGGPAE-GQLQENDRVAMVNGVS--MDNVEHAFAVQQLRKSGKNAKITIRRKKGG 99 (107)
T ss_dssp CCEEEEEECTTSTTB-TTBCTTCEEEEETTEE--CTTCCHHHHHHHHHTCCSEEEEEEEEESCC
T ss_pred CCEEEEEECCCCchh-hCCCCCCEEEEECCEE--CCCccHHHHHHHhhCCCCEEEEEEEECCCC
Confidence 478999999999999 9999999999999999 8887666554433 5688999999997753
No 122
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.04 E-value=5.6e-10 Score=79.41 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=53.2
Q ss_pred CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301 109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL 172 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~ 172 (195)
..+++|..|.++|||+++| |++||+|++|||.+ +. ++.++...+.. .+.++.++|.|++..
T Consensus 41 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~~ 104 (108)
T 1q7x_A 41 HGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVS--LEGATHKQAVETLRN-TGQVVHLLLEKGQSP 104 (108)
T ss_dssp SCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEE--CBSCTTSHHHHHHHH-TTSEEEEEEECCCCS
T ss_pred CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCcc
Confidence 3578999999999999999 99999999999999 66 77788888876 478999999998753
No 123
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=99.03 E-value=9.8e-10 Score=77.87 Aligned_cols=59 Identities=24% Similarity=0.262 Sum_probs=51.9
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +. ++.++...+.. .++++.++|.|++.
T Consensus 38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~ 99 (106)
T 3axa_A 38 LGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRS--LVGLSQERAAELMTR-TSSVVTLEVAKQGA 99 (106)
T ss_dssp EEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-CCSEEEEEEECCCS
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCc
Confidence 468899999999999999 99999999999999 65 58888877765 67899999999875
No 124
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=99.03 E-value=4.3e-11 Score=86.07 Aligned_cols=69 Identities=22% Similarity=0.328 Sum_probs=55.0
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHH--HHHHHHhhCCCCeEEEEEEEC-CEEEEEEEEeccC
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLE--RLAAEGRKNQGNAVPVVIMRQ-GGLINLAVTPRPW 182 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~--~l~~~l~~~~g~~v~l~V~R~-g~~~~~~l~~~~~ 182 (195)
.+++|..|.++|||+++||++||+|++|||++ +.++. ++...+... ..+.++|.|+ ++..++.+.+..|
T Consensus 41 ~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~--v~~~~~~~~~~~~~~~--~~v~l~v~r~~g~~~~~~~~~~~~ 112 (114)
T 1x5n_A 41 PGIFISHVKPGSLSAEVGLEIGDQIVEVNGVD--FSNLDHKEAVNVLKSS--RSLTISIVAAAGRELFMTDRSGPS 112 (114)
T ss_dssp CSEEEEEECTTSTTTTTTCCTTCEEEEETTEE--TTSCCTTHHHHHHHHC--SSEEEEECSSTTTHHHHSSCCCCS
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhcC--CeEEEEEEcCCCCceEEEeccCCC
Confidence 46899999999999999999999999999999 77664 466666553 5789999998 7665555555444
No 125
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.03 E-value=8.3e-10 Score=79.38 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=52.5
Q ss_pred CceEEEEEcCCChhhhcCC-CCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDGL-QLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL-~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++|| ++||+|++|||++ +. +++++..++.... .++.|+|.|+++
T Consensus 48 ~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~-~~v~l~v~r~~~ 109 (113)
T 1va8_A 48 DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIE--IRGKDVNEVFDLLSDMH-GTLTFVLIPSSG 109 (113)
T ss_dssp SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHCC-EEEEEEEECCCC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCC-CeEEEEEEECCc
Confidence 5688999999999999999 9999999999999 77 7899999987654 479999998775
No 126
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=99.03 E-value=2.5e-11 Score=102.86 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=0.0
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEeccC
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPW 182 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l~~~~~ 182 (195)
.+++|.+|.++|||++|||++||+|++|||++ +.++.++..++.. ++++.++|.|+|+.++++++|..|
T Consensus 254 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~l~~--~~~v~l~v~R~g~~~~~~v~p~~~ 322 (332)
T 3num_A 254 SGAYIIEVIPDTPAEAGGLKENDVIISINGQS--VVSANDVSDVIKR--ESTLNMVVRRGNEDIMITVIPEEI 322 (332)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CceEEEEeccCCChHHcCCCCCCEEEEECCEE--CCCHHHHHHHHhC--CCeEEEEEEECCEEEEEEEEEeee
Confidence 47889999999999999999999999999999 9999999988864 678999999999999999999754
No 127
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.03 E-value=5.1e-10 Score=81.05 Aligned_cols=58 Identities=22% Similarity=0.197 Sum_probs=53.0
Q ss_pred ceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 111 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
+++|..|.++|||+++| |++||+|++|||++ + .+++++..++.. .+..+.|+|.|+++
T Consensus 43 ~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~ 103 (117)
T 1v62_A 43 VITIDRIKPASVVDRSGALHPGDHILSIDGTS--MEHCSLLEATKLLAS-ISEKVRLEILPVPQ 103 (117)
T ss_dssp EEEEEECCTTSHHHHHTCCCTTCBEEEETTEE--TTSCCHHHHHHHHHS-CSSEEEEEECCBTT
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEEECCC
Confidence 38899999999999999 99999999999999 7 779999999984 68899999999765
No 128
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=99.02 E-value=1.6e-09 Score=74.71 Aligned_cols=59 Identities=24% Similarity=0.205 Sum_probs=50.1
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++| |++||+|++|||++ +.+ +.++...+.. .+.++.++|.|.+.
T Consensus 29 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~ 90 (92)
T 2qg1_A 29 TGVFVSDIVKGGIADADGRLMQGDQILMVNGED--VRNATQEAVAALLKC-SLGTVTLEVGRIST 90 (92)
T ss_dssp CSCEEEEECTTSHHHHHTCCCTTCEEEEETTEE--CTTCCHHHHHHHHHH-CCSEEEEEEECCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEcccc
Confidence 578899999999999999 99999999999999 654 6777777765 46789999998763
No 129
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=99.02 E-value=2.8e-10 Score=82.96 Aligned_cols=61 Identities=11% Similarity=0.164 Sum_probs=52.0
Q ss_pred CceEEEEEcCCChhhhc-CCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEEE
Q 029301 110 PFAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLI 173 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~a-GL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~ 173 (195)
.+++|..|.++|||+++ ||++||+|++|||.+ +.+ +.++...++.. +..+.|+|.|+++..
T Consensus 53 ~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~--v~~~~~~~~~~~l~~~-~~~v~l~v~r~g~~~ 116 (120)
T 2iwo_A 53 VPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTS--TEGMTHTQAVNLLKNA-SGSIEMQVVAGGDVS 116 (120)
T ss_dssp EEEEEEEECTTSHHHHHTCCCTTCEEEEETTEE--CTTCBHHHHHHHHHHC-CSEEEEEEECCTTSS
T ss_pred CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEECCccc
Confidence 35789999999999999 999999999999999 654 78888888775 457999999987643
No 130
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=4e-10 Score=79.25 Aligned_cols=58 Identities=12% Similarity=0.124 Sum_probs=49.6
Q ss_pred ceEEEEEcCCChhhhc-CCCCCCEEEEECCeeCCCCc-HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 111 FAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDNL-LERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~a-GL~~GD~I~~ing~~~~v~~-~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.++|..|.++|||+++ ||++||+|++|||++ +.+ +.++...+... ++.+.|+|.|+++
T Consensus 36 ~v~V~~V~~~spA~~agGL~~GD~I~~ing~~--v~~~~~~~~~~~~~~-~~~v~l~v~R~~~ 95 (100)
T 2edp_A 36 PLTVSKIEDGGKAALSQKMRTGDELVNINGTP--LYGSRQEALILIKGS-FRILKLIVRRRNS 95 (100)
T ss_dssp EEEECCCCTTSHHHHHTSCCTTCEEEEETTEE--CCSCSHHHHHHHHTC-CSSCEEEEEECCC
T ss_pred CeEEEEECCCCHHHHcCCCCCCCEEEEECCEE--ccchHHHHHHHHHhC-CCeEEEEEEeCCC
Confidence 4688999999999999 999999999999999 776 46677777654 6789999999875
No 131
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.02 E-value=8.1e-10 Score=78.76 Aligned_cols=58 Identities=17% Similarity=0.125 Sum_probs=51.7
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEEEC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQ 169 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~R~ 169 (195)
.+++|..|.++|||+++| |++||+|++|||++ + .+++++...++...+.++.|+|.|.
T Consensus 44 ~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~~~v~l~v~R~ 104 (108)
T 2d92_A 44 SVIVIRSLVADGVAERSGGLLPGDRLVSVNEYC--LDNTSLAEAVEILKAVPPGLVHLGICSG 104 (108)
T ss_dssp EEEEEEEECTTCHHHHHTCCCTTCEEEEESSCB--CTTCCHHHHHHHHHHSCSEEEEEEEECC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCeEEEEEEcC
Confidence 568899999999999999 99999999999999 6 4599999999887666899999874
No 132
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=99.02 E-value=8.6e-10 Score=81.07 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=52.4
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
++++|..|.++|||+++| |++||+|++|||.+ + .++.++..++... +..+.++|.|+++
T Consensus 65 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~ 126 (128)
T 1nf3_C 65 PGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIE--VSGKSLDQVTDMMIAN-SRNLIITVRPANQ 126 (128)
T ss_dssp EEEEEEEECTTCHHHHHTCCCTTCEEEEETTEE--STTCCHHHHHHHHHHT-TTSEEEEEECCCC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEECCc
Confidence 468899999999999999 99999999999999 7 7899999998864 4569999999764
No 133
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=99.01 E-value=1.3e-09 Score=99.20 Aligned_cols=68 Identities=16% Similarity=0.237 Sum_probs=61.6
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR 180 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~ 180 (195)
.+++|.+|.++|||++|||++||+|++|||.+ + ++.++..++.. .+|+++.|+|.|+|+..++++++.
T Consensus 496 ~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~--v-~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~ 564 (597)
T 4fgm_A 496 QGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQ--A-TEQSVKRILERYIPGDTVTIHAFRRDELMTLELTWQ 564 (597)
T ss_dssp TEEEEEEECTTSHHHHHTCCTTCEEEEETTEE--C-CTTTHHHHHTTCCTTCEEEEEEEETTEEEEEEEECC
T ss_pred CeEEEEEeCCCChHHHCCCCCCCEEEEECCEE--C-CHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEec
Confidence 35789999999999999999999999999999 8 57888888876 578999999999999999998876
No 134
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=99.00 E-value=1.2e-09 Score=78.87 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=49.2
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEEE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMR 168 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~R 168 (195)
++++|..|.++|||+++| |++||+|++|||.+ + .+++++..++....+ .+.++|.+
T Consensus 50 ~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~--v~~~~~~~~~~~l~~~~~-~v~l~v~~ 108 (114)
T 2gzv_A 50 PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRS--IKGKTKVEVAKMIQEVKG-EVTIHYNK 108 (114)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHCCS-EEEEEEEC
T ss_pred CCEEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCC-eEEEEEEe
Confidence 458899999999999999 99999999999999 8 889999998886544 57887764
No 135
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=99.00 E-value=1.7e-09 Score=76.12 Aligned_cols=58 Identities=26% Similarity=0.298 Sum_probs=49.5
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEEECC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~R~g 170 (195)
++++|..|.++|||+++| |++||+|++|||.+ + .++.++...+.. .++++.++|.|++
T Consensus 35 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 95 (104)
T 3i4w_A 35 EGIFISFILAGGPADLSGELRKGDQILSVNGVD--LRNASHEQAAIALKN-AGQTVTIIAQYKP 95 (104)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTEEEEEETTEE--CTTCCHHHHHHHHHT-SCSEEEEEEEECH
T ss_pred CCEEEEEECCCChHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECc
Confidence 478999999999999999 99999999999999 7 456666666655 5678999999874
No 136
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=99.00 E-value=1.2e-09 Score=85.71 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=53.4
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++||++||+|++|||.+ +.+ ++++...+.. +..+.++|.|+|.
T Consensus 110 ~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~--v~~~~~~~~~~~l~~--~~~v~l~v~r~g~ 169 (192)
T 3k1r_A 110 CGLFISHLIKGGQADSVGLQVGDEIVRINGYS--ISSCTHEEVINLIRT--EKTVSIKVRHIGL 169 (192)
T ss_dssp EEEEEEEECTTSHHHHTTCCTTEEEEEETTEE--CTTCCHHHHHHHHTS--SSEEEEEEEECCE
T ss_pred CCEEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHcC--CCeEEEEEEECCc
Confidence 46789999999999999999999999999999 777 9999998876 7899999999987
No 137
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=99.00 E-value=1.8e-09 Score=74.89 Aligned_cols=58 Identities=17% Similarity=0.171 Sum_probs=49.4
Q ss_pred CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECC
Q 029301 109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g 170 (195)
..+++|..|.++|||++ ||++||+|++|||++ +.+ +.++...+.. .++++.++|.|+.
T Consensus 34 ~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~~ 93 (95)
T 1mfg_A 34 DDGIFVTRVQPEGPASK-LLQPGDKIIQANGYS--FINIEHGQAVSLLKT-FQNTVELIIVREV 93 (95)
T ss_dssp CCCEEEEEECTTSTTTT-TCCTTCEEEEETTEE--CTTCBHHHHHHHHHH-CCSEEEEEEEEEC
T ss_pred CCCEEEEEECCCCchhh-CCCCCCEEEEECCEE--cCCCCHHHHHHHhhc-CCCeEEEEEEeCC
Confidence 45789999999999999 999999999999999 765 7777777764 5789999998853
No 138
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=1.5e-10 Score=84.93 Aligned_cols=59 Identities=17% Similarity=0.294 Sum_probs=53.0
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++||++||+|++|||++ +. +++++..++... +..+.|+|.|+++
T Consensus 61 ~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~ 121 (126)
T 2yuy_A 61 DTIFVKQVKEGGPAFEAGLCTGDRIIKVNGES--VIGKTYSQVIALIQNS-DTTLELSVMPKDS 121 (126)
T ss_dssp CCCCBCCCCSSSHHHHHTCCSSCCCCEETTEE--CSSCCHHHHHHHHHTC-TTEEEEECCCCCC
T ss_pred CCEEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCEEEEEEEECCC
Confidence 45788999999999999999999999999999 76 899999998864 8899999998764
No 139
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.99 E-value=7.9e-10 Score=79.57 Aligned_cols=61 Identities=30% Similarity=0.363 Sum_probs=52.6
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEEE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLI 173 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~ 173 (195)
.+++|..|.++|||+++| |++||+|++|||++ +.+ +.++...+.... ..+.|+|.|++...
T Consensus 43 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~-~~v~l~v~R~~~~~ 106 (116)
T 2dm8_A 43 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVD--LRNSSHEEAITALRQTP-QKVRLVVYRDEAHY 106 (116)
T ss_dssp SSEECCCCCSSSHHHHHTCCCTTCEEEEETTEE--CSSSCHHHHHHHHHTCC-SEEEEEEECCSSCC
T ss_pred CCEEEEEECCCChHHhCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCC-CeEEEEEEeCCccc
Confidence 468899999999999999 99999999999999 766 788888887644 78999999987643
No 140
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.99 E-value=3.4e-10 Score=79.69 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=50.3
Q ss_pred ceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 111 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
+++|..|.++|||+++| |++||+|++|||++ +.+ +.++...+. ..+..+.|+|.|++.
T Consensus 37 ~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~-~~g~~v~l~v~R~~~ 97 (103)
T 1wfv_A 37 DLYVLRLAEDGPAIRNGRMRVGDQIIEINGES--TRDMTHARAIELIK-SGGRRVRLLLKRGTG 97 (103)
T ss_dssp EEECCCBCTTSHHHHHCSSCTTCEEEEETTEE--CSSCCHHHHHHHHH-HHCSEECEEEECTTC
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHH-cCCCeEEEEEEECCC
Confidence 67889999999999999 99999999999999 665 677777776 456789999999875
No 141
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=98.99 E-value=9.8e-10 Score=85.26 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=54.2
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEEE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLI 173 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~~ 173 (195)
.+++|..|.++|||+++| |++||+|++|||++ +.+ |.++...++. .++.+.|+|.|++...
T Consensus 130 ~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~ 193 (196)
T 3gsl_A 130 NSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVG--LEDVMHEDAVAALKN-TYDVVYLKVAKPSNAE 193 (196)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CSSCBHHHHHHHHHS-CCEEEEEEEEEESCCC
T ss_pred CCEEEEEECCCChHHhcCCCCCCCEEEEECCCc--CCCCCHHHHHHHHHc-CCCeEEEEEeCCCCcc
Confidence 468999999999999999 99999999999999 877 9999999965 4678999999987644
No 142
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=98.99 E-value=1e-09 Score=80.54 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=53.1
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC---cHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN---LLERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~---~~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +. ++.++..++.. .+..+.|+|.|+..
T Consensus 54 ~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~--v~~~~~~~~~~~~l~~-~~~~v~l~v~r~~~ 116 (128)
T 2db5_A 54 VDIFVKDVQPGSVADRDQRLKENDQILAINHTP--LDQNISHQQAIALLQQ-TTGSLRLIVAREPV 116 (128)
T ss_dssp EEEEEECCCTTSHHHHTCCCCSSCBEEEESSCB--CSTTSCHHHHHHHHHH-CCSEEEEEEEECCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCCHHHHHHHHHc-CCCeEEEEEEcCCC
Confidence 468899999999999999 99999999999999 76 89999999887 56899999999753
No 143
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=98.98 E-value=1.6e-09 Score=74.45 Aligned_cols=56 Identities=27% Similarity=0.380 Sum_probs=49.4
Q ss_pred ceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEEEC
Q 029301 111 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQ 169 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~R~ 169 (195)
+++|..|.++|||+++| |++||+|++|||.+ + .+++++..+++...+ ++.+++.+.
T Consensus 22 gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~--v~~~~~~~~~~~i~~~~~-~v~L~v~~~ 80 (88)
T 3e17_A 22 QIFVKEMTRTGLATKDGNLHEGDIILKINGTV--TENMSLTDARKLIEKSRG-KLQLVVLRD 80 (88)
T ss_dssp EEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHTTT-EEEEEECCC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCC-eEEEEEeCC
Confidence 57899999999999999 99999999999999 7 789999999987654 788877653
No 144
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=98.98 E-value=2.7e-09 Score=73.27 Aligned_cols=56 Identities=18% Similarity=0.203 Sum_probs=48.0
Q ss_pred CceEEEEEcCCChhhhc-CCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEE
Q 029301 110 PFAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMR 168 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~a-GL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R 168 (195)
.+++|..|.++|||+++ ||++||+|++|||.+ +. ++.++...+... +.++.++|.|
T Consensus 30 ~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~--v~~~~~~~~~~~~~~~-~~~v~l~v~r 88 (90)
T 1qav_A 30 MPILISKIFKGLAADQTEALFVGDAILSVNGED--LSSATHDEAVQALKKT-GKEVVLEVKY 88 (90)
T ss_dssp EEEEEEEECTTSHHHHTTCCCTTEEEEEETTEE--CTTCCHHHHHHHHHTC-CSEEEEEEEE
T ss_pred CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEE
Confidence 45789999999999999 999999999999999 65 477777777654 6789998887
No 145
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=98.97 E-value=1.8e-09 Score=78.40 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=50.9
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEEC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQ 169 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~ 169 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +. ++.++..+++.. +.++.++|.|.
T Consensus 53 ~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~--v~~~~~~~~~~~l~~~-~~~v~L~v~R~ 112 (118)
T 3b76_A 53 LPIYVISVEPGGVISRDGRIKTGDILLNVDGVE--LTEVSRSEAVALLKRT-SSSIVLKALEV 112 (118)
T ss_dssp CCEEEEEECTTSHHHHHCSSCTTCEEEEETTEE--GGGSCHHHHHHHHHSC-CSEEEEEEEEE
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 458899999999999999 99999999999999 77 899999988764 67899999874
No 146
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=98.97 E-value=1.3e-09 Score=76.06 Aligned_cols=57 Identities=19% Similarity=0.127 Sum_probs=46.9
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEEC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQ 169 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~ 169 (195)
.+++|..|.++|||+++| |++||+|++|||++ +.+ +.++...+.. .+.++.++|.|.
T Consensus 31 ~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~ 90 (96)
T 2qkv_A 31 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDA--LEGLPFQVSYALFKG-ANGKVSMEVTRP 90 (96)
T ss_dssp SSEEEEEECTTSCHHHHHHCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-CSSEEEEEEECC
T ss_pred CcEEEEEeCCCChHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhc-CCCcEEEEEEeC
Confidence 468999999999999999 99999999999999 754 4555555544 456899999885
No 147
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=98.97 E-value=2e-09 Score=78.59 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=49.9
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMR 168 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R 168 (195)
++++|..|.++|||+++| |++||+|++|||.+ +. ++.++...+....+ .+.++|.|
T Consensus 45 ~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~--v~~~~~~~~~~~l~~~~~-~v~l~v~r 103 (125)
T 3hpk_A 45 PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRS--IKGKTKVEVAKMIQEVKG-EVTIHYNK 103 (125)
T ss_dssp SSEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHSCS-EEEEEEEE
T ss_pred CCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCC-eEEEEEEE
Confidence 457899999999999999 99999999999999 76 79999999987554 58999987
No 148
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=1.9e-09 Score=74.36 Aligned_cols=58 Identities=21% Similarity=0.219 Sum_probs=49.7
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g 170 (195)
.+++|..|.++|||+++| |++||+|++|||++ +. ++.++...+... +.++.++|.|+.
T Consensus 30 ~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~r~~ 90 (93)
T 2dkr_A 30 SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVS--VEGEQHEKAVELLKAA-QGSVKLVVRSGP 90 (93)
T ss_dssp CCCEEEEECTTSHHHHHCCCCTTCBEEEETTEE--CTTSCHHHHHHHHHHC-CSEEEEEECCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCcEEEEEEeCC
Confidence 468899999999999996 99999999999999 76 578888888764 357899998864
No 149
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=98.97 E-value=2.3e-09 Score=74.95 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=45.8
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIM 167 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~ 167 (195)
.+++|.+|.++|||++|||++||+|++|||++ +. +|+++..++.+ ..++++|.
T Consensus 35 ~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~--v~~~~~~~l~~~l~~---~~l~ltV~ 89 (94)
T 3kzd_A 35 RRLYVNSVKETGLASKKGLKAGDEILEINNRA--ADALNSSMLKDFLSQ---PSLGLLVR 89 (94)
T ss_dssp CEEEEEEECTTSHHHHTTCCTTCEEEEETTEE--GGGCCHHHHHHHHHS---SEEEEEEE
T ss_pred CCeEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhC---CeEEEEEE
Confidence 46899999999999999999999999999999 66 58999988864 46777664
No 150
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.97 E-value=7.7e-10 Score=78.45 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=51.6
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhC----CCCeEEEEEEECC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKN----QGNAVPVVIMRQG 170 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~----~g~~v~l~V~R~g 170 (195)
|.++|..|.++|||+++| |++||+|++|||.+ +. +|+++..+|+.. .++++.+.|.|.+
T Consensus 32 ~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~r~~ 97 (103)
T 1ufx_A 32 PLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLT--LRGKEHREAARIIAEAFKTKDRDYIDFLVTEFN 97 (103)
T ss_dssp SSCEEEEECTTSHHHHHCSSCTTCBCCEETTEE--CTTCBHHHHHHHHHHHHHCSSCSEEEEEECCCC
T ss_pred CcEEEEEeCCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHHhcccCCCCeEEEEEEEcc
Confidence 556899999999999999 99999999999999 74 499999988864 6778999888864
No 151
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=98.97 E-value=4.5e-09 Score=82.40 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=50.9
Q ss_pred CceEEEEEcCCChhhhc-CCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECC
Q 029301 110 PFAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~a-GL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g 170 (195)
.+++|..|.++|||+++ ||++||+|++|||++ +.+| .++...+.. .+.++.++|.|++
T Consensus 33 ~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 93 (200)
T 2qt5_A 33 GKPRVSNLRQGGIAARSDQLDVGDYIKAVNGIN--LAKFRHDEIISLLKN-VGERVVLEVEYEL 93 (200)
T ss_dssp SCSEEEEECTTSHHHHTTSCCTTCEEEEETTEE--CTTSCHHHHHHHHHT-CCSEEEEEEEEEC
T ss_pred CCeEEEEECCCChHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEeccC
Confidence 35789999999999999 999999999999999 8887 888877654 4779999999876
No 152
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.96 E-value=1.9e-09 Score=94.97 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=59.5
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAV 177 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l 177 (195)
.+++|.+|.++|||+++||++||+|++|||++ +.+++++.+++.. .++.+.++|.|+|+.+.+.+
T Consensus 386 ~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~--v~~~~~~~~~l~~-~~~~v~l~v~R~g~~~~v~l 450 (451)
T 3pv2_A 386 IGVQVVGASENSAGWRAGIRPGDIIISANKKP--VTDVKSLQTIAQE-KKKELLVQVLRGPGSMYLLV 450 (451)
T ss_dssp EEEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CCSHHHHHHHTTS-SCSCEEEEEEETTEEEEEEE
T ss_pred CceEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHhc-CCCeEEEEEEECCEEEEEEe
Confidence 36789999999999999999999999999999 9999999999877 66789999999999887765
No 153
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.96 E-value=2e-09 Score=76.50 Aligned_cols=58 Identities=22% Similarity=0.247 Sum_probs=50.4
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g 170 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +. ++.++..++.. .+.++.|+|.|++
T Consensus 40 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~~ 100 (107)
T 1wf8_A 40 LGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGIS--LVGVTQNFAATVLRN-TKGNVRFVIGREK 100 (107)
T ss_dssp EEEEEEEECTTCHHHHHCSSCTTCBEEEETTEE--CBSCCHHHHHHHHHH-CCSEEEEEEEEEC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhc-CCCeEEEEEEeCC
Confidence 568899999999999999 99999999999999 65 57777777766 4789999999864
No 154
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=98.95 E-value=2.6e-09 Score=79.05 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=51.5
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++||++||+|++|||.+ +. ++.++...++. .+..+.|+|.|.+.
T Consensus 65 ~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~~~~~ 125 (132)
T 3l4f_D 65 ALQYLESVDEGGVAWRAGLRMGDFLIEVNGQN--VVKVGHRQVVNMIRQ-GGNTLMVKVVMVTR 125 (132)
T ss_dssp CSEEEEEECTTSGGGGGTCCTTCEEEEESSSB--CTTSCHHHHHHHHHH-TTTEEEEEEECCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCEEEEEEEECCC
Confidence 36899999999999999999999999999999 66 58888888877 66789999987654
No 155
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.95 E-value=5.5e-09 Score=74.14 Aligned_cols=59 Identities=19% Similarity=0.348 Sum_probs=50.5
Q ss_pred CCceEEEEEcCCChhhhc-CCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECC
Q 029301 109 RPFAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~a-GL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g 170 (195)
..+++|..|.++|||+++ ||++||+|++|||++ +. ++.++...+.. .+.++.++|.|++
T Consensus 40 ~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~~ 101 (107)
T 1uhp_A 40 SEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRD--LSRATHDQAVEAFKT-AKEPIVVQVLRRT 101 (107)
T ss_dssp SCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEE--CTTCCHHHHHHHHHH-CCSSEEEEEEECC
T ss_pred CCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCcEEEEEEeCC
Confidence 357899999999999999 999999999999999 64 47788787776 4678999998864
No 156
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=98.95 E-value=3.1e-09 Score=91.80 Aligned_cols=69 Identities=17% Similarity=0.194 Sum_probs=60.8
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCE---EEEEEEEec
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG---LINLAVTPR 180 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~---~~~~~l~~~ 180 (195)
.+++|..|.++|||++|||++||+|++|||++ +.++ +++...+....|+++.++|.|+|. .+++++++.
T Consensus 99 ~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~--v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~~~~~~~l~r~ 172 (388)
T 1fc6_A 99 KDVVVLTPAPGGPAEKAGARAGDVIVTVDGTA--VKGMSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTLQLTRQ 172 (388)
T ss_dssp SCEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHCBSTTCEEEEEEEETTEEEEEEEEEEECB
T ss_pred CcEEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhcCCCCEEEEEEEeCCCCcceEEEEEEEc
Confidence 56889999999999999999999999999999 7775 788888887789999999999987 677777653
No 157
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=2.4e-09 Score=77.67 Aligned_cols=61 Identities=23% Similarity=0.236 Sum_probs=52.0
Q ss_pred CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301 109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL 172 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~ 172 (195)
..+++|..|.++|||+++| |++||+|++|||++ +.+ +.++...+... +..+.|+|.|++..
T Consensus 46 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~~~~~-g~~v~l~v~R~~~~ 109 (120)
T 2eno_A 46 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQD--LKNLLHQDAVDLFRNA-GYAVSLRVQHRLQV 109 (120)
T ss_dssp CCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEE--CCSCCHHHHHHHHHHH-CSEEEEEEEEEEEC
T ss_pred CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEeCCcC
Confidence 3568999999999999999 99999999999999 666 66888777654 67899999997653
No 158
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=98.95 E-value=1.2e-09 Score=77.27 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=48.3
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVI 166 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V 166 (195)
.+++|..|.++|||+++||++||+|++|||++ +. +++++..++....+ ++.|+|
T Consensus 48 ~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~~-~v~l~v 103 (104)
T 2z17_A 48 MFTLICKIQEDSPAHCAGLQAGDVLANINGVS--TEGFTYKQVVDLIRSSGN-LLTIET 103 (104)
T ss_dssp CCEEEEEECTTSHHHHHTCCTTCBCCEETTEE--CTTCCHHHHHHHHHHTTT-EEEEEC
T ss_pred CCeEEEEECCCChHHHcCCCCCCEEEEECCEE--cCCCCHHHHHHHHHhCCC-cEEEEE
Confidence 56899999999999999999999999999999 87 89999999988754 777765
No 159
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.94 E-value=3e-09 Score=77.58 Aligned_cols=67 Identities=22% Similarity=0.324 Sum_probs=54.1
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEEE-EEEEEe
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLI-NLAVTP 179 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~~-~~~l~~ 179 (195)
.+++|..|.++|||+++| |++||+|++|||++ +. ++.++...+... +..+.|+|.|++... .+.++|
T Consensus 51 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~--v~~~~~~~~~~~~~~~-~~~v~l~v~R~~~~~~~~~~~P 121 (124)
T 2daz_A 51 MSIFVVGINPEGPAAADGRMRIGDELLEINNQI--LYGRSHQNASAIIKTA-PSKVKLVFIRNEDAVNQMASGP 121 (124)
T ss_dssp CCEEEEEECTTSHHHHHTCCCTTCEECEESSCB--CTTSCHHHHHHHHHHS-CSEEEEEEEECTTHHHHBCCCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEeCCCcccccccCC
Confidence 578999999999999999 99999999999999 74 477877777665 458999999987542 344443
No 160
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=98.93 E-value=2.1e-09 Score=84.27 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=55.1
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCEEE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLI 173 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~~~ 173 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +. +++++..++.. .++++.++|.|++...
T Consensus 135 ~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~ 198 (200)
T 2qt5_A 135 RPVVITCVRPGGPADREGTIKPGDRLLSVDGIR--LLGTTHAEAMSILKQ-CGQEATLLIEYDVSVM 198 (200)
T ss_dssp EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-TCSEEEEEEEEEEEC-
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECCccC
Confidence 467899999999999999 99999999999999 88 99999999987 7889999999987643
No 161
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=98.93 E-value=2.1e-09 Score=76.65 Aligned_cols=57 Identities=19% Similarity=0.131 Sum_probs=46.9
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEEC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQ 169 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~ 169 (195)
.+++|.+|.++|||+++| |++||+|++|||++ +.+ ..++...+.. .+.++.++|.|.
T Consensus 25 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~ 84 (106)
T 2la8_A 25 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDA--LEGLPFQVCYALFKG-ANGKVSMEVTRP 84 (106)
T ss_dssp SSEEEEECCTTSCHHHHTTCCTTCEEEEESSCB--CSSSCHHHHHHHHHS-CBSCEEEEEEEC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhC-CCCeEEEEEEeC
Confidence 568999999999999999 99999999999999 754 4555555544 456799999885
No 162
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=98.93 E-value=1.2e-09 Score=80.34 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=52.3
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhC------CCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKN------QGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~------~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++| |++||+|++|||++ +.+ +.++..+|+.. .+..+.|+|.|++.
T Consensus 55 ~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~~ 123 (127)
T 1wg6_A 55 LGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGET--LLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSG 123 (127)
T ss_dssp EEEEEEECCSSSSTHHHHTSCSCCBEEEETTEE--STTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECSC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHHhhccccCCCCEEEEEEEeCCC
Confidence 357899999999999999 99999999999999 655 88999888764 47899999999764
No 163
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=1.4e-09 Score=78.71 Aligned_cols=56 Identities=13% Similarity=0.218 Sum_probs=48.4
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECC
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g 170 (195)
.+++|..|.++|||+++||++||+|++|||++ +.+ |+++..++.. ..+.|+|.|..
T Consensus 44 ~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~--v~~~~~~~~~~~l~~---~~v~l~v~R~p 101 (114)
T 2d8i_A 44 RRLYVNSVKETGLASKKGLKAGDEILEINNRA--ADALNSSMLKDFLSQ---PSLGLLVRTYP 101 (114)
T ss_dssp EEEEEEECCTTSSHHHHTCCTTCCEEEESSCB--GGGCCHHHHHHHHTS---SEEEEEEEECC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEE--CCCcCHHHHHHHHhC---CcEEEEEEECC
Confidence 46889999999999999999999999999999 666 7888888864 38889888853
No 164
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=98.92 E-value=4.2e-09 Score=71.81 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=46.8
Q ss_pred ceEEEEEcCCChhhh-cCCCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEEE
Q 029301 111 FAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMR 168 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~-aGL~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~R 168 (195)
+++|..|.++|||++ +||++||+|++|||.+ + .++.++...+.. .+.++.++|.+
T Consensus 29 ~~~V~~V~~gspA~~~agl~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~~ 86 (87)
T 4e34_A 29 PILISEIHPGQPADRCGGLHVGDAILAVNGVN--LRDTKHKEAVTILSQ-QRGEIEFEVVY 86 (87)
T ss_dssp EEEEEEECTTSHHHHHSCCCTTEEEEEETTEE--CTTCCHHHHHHHHHH-CCSEEEEEEEE
T ss_pred CEEEEEECCCCHHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEE
Confidence 478999999999999 7999999999999999 6 567888888875 45678887754
No 165
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.92 E-value=1.3e-09 Score=80.37 Aligned_cols=60 Identities=18% Similarity=0.160 Sum_probs=53.0
Q ss_pred CceEEEEEcCCChhhhc-CCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~a-GL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
..++|..|.++|||+++ ||++||+|++|||++ +.+ ++++..+++...+..+.++|.|++.
T Consensus 57 ~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~ 119 (130)
T 1i16_A 57 KPLTINRIFKGAASEQSETVQPGDEILQLGGTA--MQGLTRFEAWNIIKALPDGPVTIVIRRKSL 119 (130)
T ss_dssp CCCEEEEECSSCCCSSSCCCCTTCCEEECSSCB--GGGSCHHHHHHHHHTSCSSEEEEEEEEESS
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCceEEEEEEeCCC
Confidence 34889999999999999 999999999999999 554 8999999988777889999988653
No 166
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=98.92 E-value=3.6e-09 Score=74.98 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=48.2
Q ss_pred ceEEEEEcCCChhhhcC--CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCC---CCeEEEEEEEC
Q 029301 111 FAVIDEITDASPAAEDG--LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQ---GNAVPVVIMRQ 169 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aG--L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~---g~~v~l~V~R~ 169 (195)
+++|..|.++|||+++| |++||+|++|||.+ +. ++.++...+.... +..+.|+|.|+
T Consensus 44 ~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~--v~~~~~~~~~~~i~~~~~~~~~~v~l~v~r~ 107 (107)
T 3nfk_A 44 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRD--IAEHTHDQVVLFIKASCERHSGELMLLVRPN 107 (107)
T ss_dssp EEEEEEECTTSHHHHSSSCCCTTCEEEEETTEE--CTTCCHHHHHHHHHCGGGSBTTBEEEEEECC
T ss_pred CeEEEEECCCCchHHcCCccCCCCEEEEECCEE--CCCCCHHHHHHHHHhccccCCcEEEEEEEcC
Confidence 47899999999999999 99999999999999 66 4577777777643 35899998874
No 167
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=98.91 E-value=1.1e-08 Score=79.63 Aligned_cols=68 Identities=18% Similarity=0.191 Sum_probs=55.8
Q ss_pred cCCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEE---CCEEEEEEEEe
Q 029301 108 RRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMR---QGGLINLAVTP 179 (195)
Q Consensus 108 ~~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R---~g~~~~~~l~~ 179 (195)
...+++|..|.++|||++ ||++||+|++|||++ +.+ +.++...+... +..+.|.|.| +|+...+.+.+
T Consensus 22 ~~~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~r~~~~G~~~~~~v~~ 94 (195)
T 2qbw_A 22 DDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYS--FINIEHGQAVSLLKTF-QNTVELIIVREVGNGAKQEIRVRV 94 (195)
T ss_dssp TCCSEEEEEECTTSTTTT-TCCTTCEEEEETTEE--CTTCCHHHHHHHHHHC-CSEEEEEEEEECSSSCEEEEEEEE
T ss_pred CCCCEEEEEECCCChHHh-CCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEEcCCCCCCceeEeEe
Confidence 346789999999999999 999999999999999 655 66777777664 4589999999 88777666554
No 168
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=98.91 E-value=4.7e-09 Score=71.60 Aligned_cols=55 Identities=22% Similarity=0.214 Sum_probs=46.9
Q ss_pred EEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEE
Q 029301 113 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR 168 (195)
Q Consensus 113 ~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R 168 (195)
.|..|.++|||+++||++||+|++|||++..-.+.+++.+.|+ ..+..++++|..
T Consensus 26 ~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr-~~g~~V~L~v~p 80 (82)
T 1r6j_A 26 KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILS-TSGTVVTITIMP 80 (82)
T ss_dssp EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEEE
T ss_pred EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHh-cCCCEEEEEEEe
Confidence 4789999999999999999999999999933346889999998 567788888764
No 169
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=98.91 E-value=2.6e-09 Score=75.26 Aligned_cols=58 Identities=17% Similarity=0.171 Sum_probs=49.4
Q ss_pred CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECC
Q 029301 109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g 170 (195)
..+++|..|.++|||++ ||++||+|++|||.+ +.+ +.++...+.. .++++.++|.|+.
T Consensus 42 ~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 101 (103)
T 1n7t_A 42 DDGIFVTRVQPEGPASK-LLQPGDKIIQANGYS--FINIEHGQAVSLLKT-FQNTVELIIVREV 101 (103)
T ss_dssp CCSEECCCBSSSSTTSS-SCCTTCEEEEETTEE--CSSCCHHHHHHHHHH-CCSEEEEEEECCC
T ss_pred CCCEEEEEECCCCchHH-CCCCCCEEEEECCEE--CCCCCHHHHHHHhhc-CCCeEEEEEEecC
Confidence 45788999999999999 999999999999999 755 7777777764 5788999998863
No 170
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.4e-09 Score=75.97 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=49.2
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECC
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g 170 (195)
.+++|..|.++|||+ +||++||+|++|||++ +.+ +.++...+.. .++.+.++|.|++
T Consensus 31 ~~~~V~~V~~~spA~-agL~~GD~Il~ing~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 89 (96)
T 2edv_A 31 LPLTVVAVTAGGSAH-GKLFPGDQILQMNNEP--AEDLSWERAVDILRE-AEDSLSITVVRCT 89 (96)
T ss_dssp SSCBCCCBCSSSSST-TTSCTTCBEEEESSCB--STTCCHHHHHHHHHH-CSSCEEEEEEECC
T ss_pred CCeEEEEECCCCchh-hCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 357889999999995 9999999999999999 654 7788777776 6789999999976
No 171
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=1.8e-09 Score=76.45 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=50.1
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||+++||++||+|++|||.+ +. ++.++...+... +..+.++|.|.+.
T Consensus 32 ~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~r~~~ 92 (106)
T 2eei_A 32 KGVYMTDITPQGVAMRAGVLADDHLIEVNGEN--VEDASHEEVVEKVKKS-GSRVMFLLVDKET 92 (106)
T ss_dssp CSCEECCCCTTSHHHHHTCCSSEEEEEETTEE--CTTCCHHHHHHHHHHH-CSEEEEEECCTTT
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEcCch
Confidence 56889999999999999999999999999999 65 568887777653 5688999988654
No 172
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.89 E-value=1.1e-09 Score=78.33 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=51.8
Q ss_pred CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEECC
Q 029301 109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~g 170 (195)
..+++|..|.++|||+++| |++||+|++|||++ +. ++.++..++.. .+..+.|+|.|+.
T Consensus 43 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~r~~ 104 (111)
T 1uju_A 43 DEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQS--LLGLTHGEAVQLLRS-VGDTLTVLVCDGF 104 (111)
T ss_dssp CCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCB--CTTSCHHHHHHHHSS-CSSEEEECCCCCC
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 3568999999999999999 99999999999999 77 78998888865 5788999988864
No 173
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=98.88 E-value=7.7e-09 Score=79.82 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=51.1
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEEEC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQ 169 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~R~ 169 (195)
.+++|..|.++|||+++| |++||+|++|||.+ + .++.++...++. .+..+.|+|.|+
T Consensus 111 ~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~--v~~~~~~~~~~~l~~-~g~~v~L~V~R~ 170 (170)
T 3egg_C 111 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTS--LVGVTQSFAASVLRN-TKGRVRFMIGRE 170 (170)
T ss_dssp BEEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTBCHHHHHHHHHH-CCSEEEEEEEEC
T ss_pred CCEEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCEEEEEEEeC
Confidence 568899999999999999 99999999999999 6 678899888887 567999999885
No 174
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=98.88 E-value=4.3e-09 Score=76.06 Aligned_cols=58 Identities=26% Similarity=0.284 Sum_probs=47.8
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHH--HHHHhhCCCCeEEEEEEECC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERL--AAEGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l--~~~l~~~~g~~v~l~V~R~g 170 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +.++.+. ...+. ..+.++.++|.|++
T Consensus 38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~-~~~~~v~l~v~r~~ 98 (119)
T 1tp5_A 38 EGIFISFILAGGPADLSGELRKGDQILSVNGVD--LRNASHEQAAIALK-NAGQTVTIIAQYKP 98 (119)
T ss_dssp CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEE--CTTCCHHHHHHHHH-TSCSEEEEEEEECH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHH-cCCCeEEEEEEECC
Confidence 578999999999999999 99999999999999 8776433 33333 46789999999865
No 175
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.88 E-value=4.4e-09 Score=82.37 Aligned_cols=58 Identities=24% Similarity=0.319 Sum_probs=53.8
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g 170 (195)
.+++|.+|.++|||+++| |++||+|++|||.+ +.+ ++++..++... ++.+.++|.|++
T Consensus 135 ~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~~~-~~~v~l~v~R~~ 195 (196)
T 1p1d_A 135 DPLVISDIKKGSVAHRTGTLELGDKLLAIDNIR--LDSCSMEDAVQILQQC-EDLVKLKIRKDE 195 (196)
T ss_dssp CCCEEEECCSSSHHHHTSCCCTTCEEEEETTEE--GGGCCHHHHHHHHHHC-TTCEEEEEECCC
T ss_pred CCEEEEEECCCCcHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCEEEEEEEeCC
Confidence 467999999999999999 99999999999999 887 99999999887 889999999976
No 176
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.87 E-value=6.6e-09 Score=72.55 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=50.0
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCC-CCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQ-GNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~-g~~v~l~V~R~g~ 171 (195)
.+.+|..|.+ +|+++||++||+|++|||++ +.+ |+++..+++..+ ++++.|+|.|++.
T Consensus 32 ~Gv~V~~v~~--~a~~aGL~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 92 (96)
T 1ujv_A 32 TGQRVKQILD--IQGCPGLCEGDLIVEINQQN--VQNLSHTEVVDILKDCPIGSETSLIIHRGSG 92 (96)
T ss_dssp TEEEEEEESC--GGGSTTCCSSCEEEEETTEE--CSSCCHHHHHHHHHHSCTTSEEEEEEECCSS
T ss_pred CCEEEEEEec--ccccCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCCCCEEEEEEEECCC
Confidence 3678899988 37899999999999999999 754 699999998864 8899999999864
No 177
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.87 E-value=4.7e-09 Score=76.04 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=49.9
Q ss_pred ceEEEEEcCCChhhhc-CCCCCCEEEEECCeeCCCCc--HHHHHHHHhhC---CCCeEEEEEEEC
Q 029301 111 FAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDNL--LERLAAEGRKN---QGNAVPVVIMRQ 169 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~a-GL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~---~g~~v~l~V~R~ 169 (195)
.++|..|.++|||+++ ||++||+|++|||.+ +.+ ++++...++.. .|+++.|+|.|.
T Consensus 44 ~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~--v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r~ 106 (118)
T 1v6b_A 44 KVVVSAVYEGGAAERHGGVVKGDEIMAINGKI--VTDYTLAEAEAALQKAWNQGGDWIDLVVAVC 106 (118)
T ss_dssp SEEEEECCTTSHHHHHCSSCTTCEEEEESSCB--CTTCBHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHHhhhcCCCeEEEEEEeC
Confidence 3789999999999999 999999999999999 665 88988888753 478999999984
No 178
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=98.87 E-value=9.3e-09 Score=72.60 Aligned_cols=58 Identities=19% Similarity=0.230 Sum_probs=49.4
Q ss_pred ceEEEEEcCCChhhhc-CCCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 111 FAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~a-GL~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
+++|..|.++|||+++ ||++||+|++|||.+ + .++.++...+.... ..+.++|.|...
T Consensus 36 ~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~--v~~~~~~~~~~~l~~~~-~~v~l~v~~~~~ 96 (103)
T 2dc2_A 36 PILISEIHPGQPADRCGGLHVGDAILAVNGVN--LRDTKHKEAVTILSQQR-GEIEFEVVYVAL 96 (103)
T ss_dssp EEEEEEECTTSHHHHHTCCCSSEEEEEETTEE--STTSCHHHHHHHHHHCC-SEEEEEEEECC-
T ss_pred CEEEEEECCCCHHHHhCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCC-CcEEEEEEecCC
Confidence 5789999999999995 999999999999999 6 45899998888754 488999888643
No 179
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.87 E-value=5.1e-09 Score=75.50 Aligned_cols=60 Identities=20% Similarity=0.299 Sum_probs=50.8
Q ss_pred CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
..+++|..|.++|||+++| |++||+|++|||.+ +.+ +.++...+.. .++.+.|+|.|...
T Consensus 49 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~r~~~ 111 (117)
T 2ehr_A 49 LKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVD--LQNASHSEAVEAIKN-AGNPVVFIVQSLSS 111 (117)
T ss_dssp CCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCB--CTTCCHHHHHHHHHT-SCSSEEEEECCBSC
T ss_pred cCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECCC
Confidence 3578999999999999999 99999999999999 644 7788877765 57789999987543
No 180
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.86 E-value=3.3e-09 Score=76.74 Aligned_cols=60 Identities=12% Similarity=0.132 Sum_probs=50.8
Q ss_pred ceEEEEEcCCChhhhc--CCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCC---CCeEEEEEEECCEE
Q 029301 111 FAVIDEITDASPAAED--GLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQ---GNAVPVVIMRQGGL 172 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~a--GL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~---g~~v~l~V~R~g~~ 172 (195)
+++|..|.++|||+++ ||++||+|++|||.+ +. ++.++...+.... +.++.++|.|+...
T Consensus 42 ~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~--v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~~ 108 (119)
T 2cs5_A 42 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRD--IAEHTHDQVVLFIKASCERHSGELMLLVRPNAVY 108 (119)
T ss_dssp EEEEEEECSSSTTTSSSSCCCTTCEEEEETTBC--TTSSCHHHHHHHHHHHHHCCSSCEEEEEECCCCC
T ss_pred CeEEEEECCCCHHHHhhcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhccccCCCEEEEEEEccccc
Confidence 4789999999999999 999999999999999 65 4788888887643 35899999997653
No 181
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=98.80 E-value=9.1e-10 Score=97.02 Aligned_cols=69 Identities=19% Similarity=0.294 Sum_probs=61.1
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR 180 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~~~ 180 (195)
.+++|.+|.++|||++|||++||+|++|||++ +.++.++..++.. ..|+++.++|.|+|+..++++++.
T Consensus 286 ~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~ 355 (448)
T 1ky9_A 286 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKP--ISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQ 355 (448)
T ss_dssp CSEECCCCTTCSSSTTTTCCTTCEECBSSSSB--CCSSHHHHHHTTSSBTTCCCEEEEESSSCEEECCCC--
T ss_pred CceEEEEeccCCHHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEe
Confidence 47889999999999999999999999999999 9999999998876 578899999999998887776653
No 182
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=98.79 E-value=1.2e-08 Score=88.34 Aligned_cols=59 Identities=24% Similarity=0.327 Sum_probs=53.9
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhh-CCCCeEEEEEEECC
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRK-NQGNAVPVVIMRQG 170 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~-~~g~~v~l~V~R~g 170 (195)
.+++|..|.+||||++|||++||+|++|||.+ +.+ ++++...+.. ..|+++.++|.|++
T Consensus 31 ~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~--v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~ 92 (391)
T 3tsz_A 31 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVD--FTNIIREEAVLFLLDLPKGEEVTILAQKKK 92 (391)
T ss_dssp TEEEEEEECTTCHHHHTTCCTTEEEEEETTEE--CTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhhcCCCeEEEEEeeCC
Confidence 57889999999999999999999999999999 754 9999999987 68899999999875
No 183
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.78 E-value=1.2e-08 Score=73.65 Aligned_cols=60 Identities=22% Similarity=0.227 Sum_probs=50.3
Q ss_pred CCceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 029301 109 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL 172 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~~ 172 (195)
..+++|..|.++|||+ +||++||+|++|||++ +.+ +.++...+.. .++.+.|+|.|.+..
T Consensus 45 ~~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~ 106 (117)
T 2csj_A 45 ETSIVISDVLPGGPAD-GLLQENDRVVMVNGTP--MEDVLHSFAVQQLRK-SGKIAAIVVKRPRKV 106 (117)
T ss_dssp CCBCEEEEECTTSSHH-HHBCTTCEEEEESSCB--CBTCCHHHHHHHHHH-SCSEEEEEEEEEEEC
T ss_pred CCCEEEEEECCCCccc-ccCCCCCEEEEECCEE--CCCcCHHHHHHHHhc-CCCeEEEEEEECCcc
Confidence 3568999999999997 9999999999999999 654 6777777776 578999999986553
No 184
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.77 E-value=2.9e-09 Score=92.18 Aligned_cols=81 Identities=17% Similarity=0.211 Sum_probs=55.3
Q ss_pred cCCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcH--HHHHHHHhhC-CCCeEEEEEEECCEEEEEEEEeccCC
Q 029301 108 RRPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLL--ERLAAEGRKN-QGNAVPVVIMRQGGLINLAVTPRPWQ 183 (195)
Q Consensus 108 ~~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~--~~l~~~l~~~-~g~~v~l~V~R~g~~~~~~l~~~~~~ 183 (195)
..++++|..|.++|||+++| |++||+|++|||.+ +.+| .++...+... .+..+.++|.|++...++.+....
T Consensus 230 ~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~--v~~~~~~~~~~~l~~~~~~~~v~l~v~r~~~~~~v~l~~~~-- 305 (388)
T 3suz_A 230 ILPTVILANMMNGGPAARSGKLSIGDQIMSINGTS--LVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPD-- 305 (388)
T ss_dssp CSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEE--CSSCCSTTHHHHTTTCTTCSCEEEEEEECCSCC----------
T ss_pred cCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEE--ccCCCHHHHHHHHHhccCCCccccccccccccceeeEeecC--
Confidence 34568999999999999999 99999999999999 8777 6777888764 567799999998877666663321
Q ss_pred CceeeeEEE
Q 029301 184 GRGLLGCHF 192 (195)
Q Consensus 184 ~~~~lGi~l 192 (195)
..+.||+.+
T Consensus 306 ~~~~lG~~i 314 (388)
T 3suz_A 306 LKYQLGFSV 314 (388)
T ss_dssp ---------
T ss_pred CCCccceEE
Confidence 234566654
No 185
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.76 E-value=9e-09 Score=73.46 Aligned_cols=58 Identities=26% Similarity=0.298 Sum_probs=48.9
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g 170 (195)
.+++|..|.++|||+++| |++||+|++|||++ +.++ .++...+. ..++.+.++|.|++
T Consensus 39 ~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~~~-~~~~~v~l~v~r~~ 99 (113)
T 1um7_A 39 EGIFVSFILAGGPADLSGELRRGDRILSVNGVN--LRNATHEQAAAALK-RAGQSVTIVAQYRP 99 (113)
T ss_dssp CCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCB--CTTCCHHHHHHHHH-SCCSEEEEEEECCH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHH-hCCCcEEEEEEECc
Confidence 467889999999999999 99999999999999 7664 66666665 45778999998865
No 186
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=98.76 E-value=2.5e-08 Score=89.55 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=57.6
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHH----------HHHHHhh-CCCCeEEEEEEECCEEEEEEEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLER----------LAAEGRK-NQGNAVPVVIMRQGGLINLAVT 178 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~----------l~~~l~~-~~g~~v~l~V~R~g~~~~~~l~ 178 (195)
.+++|.+|.++|||+++ |++||+|++|||++ +.+..+ +..++.. .+|+++.|+|.|+|+.++++++
T Consensus 277 ~Gv~V~~V~~~spA~~a-l~~GDvI~~idg~~--V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk~~~v~Vt 353 (539)
T 4fln_A 277 EGVLVRRVEPTSDASKV-LKEGDVIVSFDDLH--VGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHKKVQVV 353 (539)
T ss_dssp BCEEEEEECTTSGGGGT-CCTTCEEEEETTEE--CBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTEEEEEEEE
T ss_pred CceeeecccCCChHHhC-ccCCCEEEEECCEE--eCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEE
Confidence 48999999999999876 99999999999999 654332 5566665 6899999999999999998887
Q ss_pred ec
Q 029301 179 PR 180 (195)
Q Consensus 179 ~~ 180 (195)
..
T Consensus 354 l~ 355 (539)
T 4fln_A 354 LR 355 (539)
T ss_dssp CB
T ss_pred Ec
Confidence 64
No 187
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=98.75 E-value=2.9e-09 Score=85.30 Aligned_cols=68 Identities=22% Similarity=0.314 Sum_probs=58.1
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeE-EEEEEECCEEE--EEEEEec
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAV-PVVIMRQGGLI--NLAVTPR 180 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v-~l~V~R~g~~~--~~~l~~~ 180 (195)
.+++|..|.++|||+++||++||+|++|||.+ +. +++++..++... |..+ .++|.|+|... ++.+++.
T Consensus 33 ~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~--V~~~s~~dl~~~l~~~-g~~v~~l~V~R~g~~~~~~v~v~p~ 105 (216)
T 2krg_A 33 PGQFIRSVDPDSPAEASGLRAQDRIVEVNGVC--MEGKQHGDVVSAIRAG-GDETKLLVVDRETDEFFKKCRVIPS 105 (216)
T ss_dssp CSCBEEEECTTSHHHHHTCCTTCBCCEETTEE--CTTCCTHHHHHHHHHH-CSEEEEEECCHHHHHHHHHHTCCCC
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhc-CCeEEEEEEEECCEEEEEEEEEEEe
Confidence 46889999999999999999999999999999 88 899999988776 7788 88898888655 4555443
No 188
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=98.69 E-value=8.1e-09 Score=89.81 Aligned_cols=57 Identities=18% Similarity=0.119 Sum_probs=49.7
Q ss_pred ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
+++|..|.++|||++|||++||+|++|||++ +.+++ +..++.. .|.++.|+|.|+|.
T Consensus 91 ~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~--v~~~~-~~~~l~~-~g~~v~l~v~R~g~ 147 (403)
T 3k50_A 91 NALISYVVPGSPAEEAGLQRGHWIMMMNGDY--ITKKV-ESELLQG-STRQLQIGVYKEVV 147 (403)
T ss_dssp EEEEEEECTTSHHHHTTCCTTCEEEEETTBC--BCTTT-GGGGTSC-SCEEEEEEEEEEEC
T ss_pred eEEEEEeCCCChHHHcCCCCCCEEEEECCEE--ccchh-HHHHhhC-CCCEEEEEEEeCCc
Confidence 4789999999999999999999999999999 87774 6666666 88899999999764
No 189
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=98.69 E-value=3.3e-08 Score=77.54 Aligned_cols=57 Identities=19% Similarity=0.131 Sum_probs=49.3
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEEC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQ 169 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~ 169 (195)
.+++|.+|.++|||+++| |++||+|++|||++ +.+ +.++...++. .++.+.|+|.|.
T Consensus 136 ~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~--v~~~~~~~~~~~l~~-~~~~v~L~V~R~ 195 (206)
T 3r0h_A 136 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDA--LEGLPFQVCYALFKG-ANGKVSMEVTRP 195 (206)
T ss_dssp SCEEEEEECTTSCHHHHHHCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-CCSEEEEEEEEE
T ss_pred ceEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 568999999999999999 99999999999999 774 4788888865 456899999884
No 190
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=98.64 E-value=6.2e-08 Score=85.65 Aligned_cols=59 Identities=24% Similarity=0.327 Sum_probs=53.7
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCc--HHHHHHHHhh-CCCCeEEEEEEECC
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRK-NQGNAVPVVIMRQG 170 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~-~~g~~v~l~V~R~g 170 (195)
.+++|..|.+||||+++||++||+|++|||.+ +.+ ++++...|.. ..|..+.|+|.|++
T Consensus 23 ~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~--v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g 84 (468)
T 3shw_A 23 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVD--FTNIIREEAVLFLLDLPKGEEVTILAQKKK 84 (468)
T ss_dssp TEEEEEEECSSSHHHHTTCCTTEEEEEETTEE--CTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 57889999999999999999999999999999 766 9999999987 47889999999965
No 191
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=98.64 E-value=1.6e-07 Score=67.74 Aligned_cols=59 Identities=22% Similarity=0.204 Sum_probs=49.4
Q ss_pred ceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhC-CCCeEEEEEEECCEEE
Q 029301 111 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKN-QGNAVPVVIMRQGGLI 173 (195)
Q Consensus 111 ~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~-~g~~v~l~V~R~g~~~ 173 (195)
+..|..|.+ |++.+||++||+|++|||.+ +. +++++...|+.. .|..+.|+|.|++...
T Consensus 35 g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~--v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~~~ 96 (113)
T 3soe_A 35 GQKVKMILD--SQWCQGLQKGDIIKEIYHQN--VQNLTHLQVVEVLKQFPVGADVPLLILRGGPPS 96 (113)
T ss_dssp EEEEEEESC--GGGSTTCCTTCEEEEETTEE--CTTSCHHHHHHHHHHSCTTCEEEEEEEESSCC-
T ss_pred CcEEEEecC--hHHhCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCCCCEEEEEEEECCccC
Confidence 345777776 68899999999999999999 76 678999999874 5889999999988643
No 192
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=98.60 E-value=4.7e-09 Score=92.42 Aligned_cols=65 Identities=20% Similarity=0.265 Sum_probs=0.0
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEEEEEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAV 177 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~~~~l 177 (195)
.+++|.+|.++|||+++||++||+|++|||++ +.+++++..++....+ .+.|+|.|+|+.+++.+
T Consensus 383 ~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~--v~~~~~l~~~l~~~~~-~v~l~v~R~g~~~~~~l 447 (448)
T 1ky9_A 383 QGVVVNNVKTGTPAAQIGLKKGDVIIGANQQA--VKNIAELRKVLDSKPS-VLALNIQRGDSTIYLLM 447 (448)
T ss_dssp --------------------------------------------------------------------
T ss_pred CeEEEEEecCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHcCCC-eEEEEEEECCEEEEEEe
Confidence 35788999999999999999999999999999 9999999999887655 88999999998776654
No 193
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=98.03 E-value=5e-09 Score=75.36 Aligned_cols=55 Identities=20% Similarity=0.295 Sum_probs=44.7
Q ss_pred CceEEEEEcCCChhhh-cCCCCCCEEEEECCeeCCC--CcHHHHHHHHhhCCCCeEEEEEE
Q 029301 110 PFAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIM 167 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~-aGL~~GD~I~~ing~~~~v--~~~~~l~~~l~~~~g~~v~l~V~ 167 (195)
.+++|..|.++|||++ +||++||+|++|||.+ + .++.++...++... ..+.++|.
T Consensus 53 ~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~--v~~~~~~~~~~~l~~~~-~~v~l~V~ 110 (112)
T 2lob_A 53 VPILISEIHPGQPADRCGGLHVGDAILAVNGVN--LRDTKHKEAVTILSQQR-GEIEFEVV 110 (112)
Confidence 3578999999999999 9999999999999999 7 56888888776533 34666654
No 194
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=98.55 E-value=9.3e-08 Score=78.63 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=50.9
Q ss_pred CceEEEEEcCCChhhh-cCCCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECCE
Q 029301 110 PFAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~-aGL~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
.+++|..|.++|||++ +||++||+|++|||++ +.+ +.++..+++.. ++.+.|+|.|.++
T Consensus 103 ~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~--v~~~t~~e~v~~l~~~-g~~V~L~V~R~~~ 164 (263)
T 1z87_A 103 MPILISKIFKGLAADQTEALFVGDAILSVNGED--LSSATHDEAVQALKKT-GKEVVLEVKYMKE 164 (263)
T ss_dssp EEEEEEECCTTSHHHHCTTCCSSCEEEEESSCB--CTTSCHHHHHHHHHHC-CSCCCEEEECCSS
T ss_pred CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEE--CCCcCHHHHHHHHhcC-CCeEEEEEEeCcc
Confidence 3578999999999999 7999999999999999 655 78888888775 6679999998654
No 195
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=98.39 E-value=3.6e-08 Score=75.20 Aligned_cols=33 Identities=24% Similarity=0.215 Sum_probs=31.1
Q ss_pred EEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcH
Q 029301 113 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL 147 (195)
Q Consensus 113 ~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~ 147 (195)
+|..|.++|||+++||++||+|++|||.+ +.+|
T Consensus 110 ~v~~v~~~s~a~~aGl~~GD~I~~ing~~--v~~~ 142 (166)
T 1w9e_A 110 KITSIVKDSSAARNGLLTEHNICEINGQN--VIGL 142 (166)
T ss_dssp EEEEECTTSHHHHTTCCSSEEEEEETTEE--CTTC
T ss_pred EEEEEccCCHHHHcCCCCCCEEEEECCEE--CCCC
Confidence 78899999999999999999999999999 7765
No 196
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=98.38 E-value=5.2e-07 Score=83.66 Aligned_cols=60 Identities=25% Similarity=0.382 Sum_probs=50.7
Q ss_pred CCceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcH--HHHHHHHhhCCCCeEEEEEEECCE
Q 029301 109 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG 171 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~--~~l~~~l~~~~g~~v~l~V~R~g~ 171 (195)
..+++|..|.++|||+++| |++||+|++|||.+ +.++ .++...+.. .|..+.++|.|++.
T Consensus 88 ~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~ 150 (721)
T 2xkx_A 88 DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD--VREVTHSAAVEALKE-AGSIVRLYVMRRKP 150 (721)
T ss_pred CCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHhhc-cccccceEEEeccc
Confidence 4568999999999999999 99999999999999 7665 666666654 57789999999874
No 197
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=98.36 E-value=6.9e-07 Score=85.11 Aligned_cols=68 Identities=13% Similarity=0.100 Sum_probs=59.7
Q ss_pred CCceEEEEEcCC--------ChhhhcC--CCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECC-EEEEEEE
Q 029301 109 RPFAVIDEITDA--------SPAAEDG--LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG-GLINLAV 177 (195)
Q Consensus 109 ~~~~~V~~V~~~--------SpA~~aG--L~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g-~~~~~~l 177 (195)
..+.+|..|.++ |||+++| |+ ||+|++|||++ +.++.++..++....|+.+.|+|.|++ +.+++++
T Consensus 747 ~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~--~~~~~~~~~~~~~~~g~~v~l~v~r~~~~~~~~~~ 823 (1045)
T 1k32_A 747 GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGET--VGAGSNIYRVLSEKAGTSARIRLSGKGGDKRDLMI 823 (1045)
T ss_dssp TTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEE--CBTTBCHHHHHHTTTTSEEEEEEECSSSCEEEEEE
T ss_pred CCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEE--ccchhhHHHhhcCCCCCEEEEEEECCCCceEEEEE
Confidence 356788999988 9999999 99 99999999999 888778888898888999999999987 5667787
Q ss_pred Ee
Q 029301 178 TP 179 (195)
Q Consensus 178 ~~ 179 (195)
++
T Consensus 824 ~~ 825 (1045)
T 1k32_A 824 DI 825 (1045)
T ss_dssp EC
T ss_pred EE
Confidence 75
No 198
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=98.27 E-value=6.7e-06 Score=57.32 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=48.6
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCcHHHHHHHHhh-CCCCeEEEEEEE
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMR 168 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~~~~l~~~l~~-~~g~~v~l~V~R 168 (195)
...+|..+.++|||++.| |++||.|++|||+...-.+..++.+.|++ ..|.++++.+.+
T Consensus 28 g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~ 88 (95)
T 3gge_A 28 GYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIE 88 (95)
T ss_dssp SCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred CcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEEC
Confidence 346799999999999986 89999999999999333467899999988 457788887765
No 199
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=98.20 E-value=3.2e-06 Score=78.38 Aligned_cols=58 Identities=26% Similarity=0.296 Sum_probs=50.9
Q ss_pred CceEEEEEcCCChhhhcC-CCCCCEEEEECCeeCCCCc--HHHHHHHHhhCCCCeEEEEEEECC
Q 029301 110 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG 170 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aG-L~~GD~I~~ing~~~~v~~--~~~l~~~l~~~~g~~v~l~V~R~g 170 (195)
.+++|..|.++|||+++| |++||+|++|||.+ +.+ ++++...+... +..+.+.|.|+.
T Consensus 331 ~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~--v~~~~~~e~~~~l~~~-~~~v~L~v~r~~ 391 (721)
T 2xkx_A 331 EGIFISFILAGGPADLSGELRKGDQILSVNGVD--LRNASHEQAAIALKNA-GQTVTIIAQYKP 391 (721)
T ss_pred CCeEEEEeCCCChHHhcCCCccCCEEEEECCEE--CCCCCHHHHHHHHHhc-CCeEEEEEEeCc
Confidence 467899999999999999 99999999999999 765 89999998764 567899998864
No 200
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=97.79 E-value=3e-06 Score=73.14 Aligned_cols=55 Identities=11% Similarity=0.201 Sum_probs=0.0
Q ss_pred eEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCC--cHHHHHHHHhhCCCCeEEEEEEEC
Q 029301 112 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQ 169 (195)
Q Consensus 112 ~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~--~~~~l~~~l~~~~g~~v~l~V~R~ 169 (195)
.+|.+|.++|||+++||++||+|++|||++ +. +++++...+.. .+..+.++|.+.
T Consensus 317 g~I~~V~~gs~A~~aGL~~GD~Il~VNg~~--v~~~s~~~~~~~l~~-~~~~v~L~V~p~ 373 (388)
T 3suz_A 317 GIICSLMRGGIAERGGVRVGHRIIEINGQS--VVATAHEKIVQALSN-SVGEIHMKTMPA 373 (388)
T ss_dssp ------------------------------------------------------------
T ss_pred CEEEEeecCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEEec
Confidence 478899999999999999999999999999 75 57888887765 345667776543
No 201
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=97.74 E-value=6.2e-05 Score=67.59 Aligned_cols=61 Identities=11% Similarity=0.037 Sum_probs=52.7
Q ss_pred CceEEEEEcCCChhhhcCCCCCCEEEEECCeeCCCCcHHHHHHHHhhCCCCeEEEEEEECCEEE
Q 029301 110 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLI 173 (195)
Q Consensus 110 ~~~~V~~V~~~SpA~~aGL~~GD~I~~ing~~~~v~~~~~l~~~l~~~~g~~v~l~V~R~g~~~ 173 (195)
.+++|..|.++|+|..+|+++||+|++|||++ +.+..+|.+++....++.+.+.+. ++..+
T Consensus 415 ~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~--V~s~~~l~~~l~~~k~~~l~~~~~-~~~~i 475 (539)
T 4fln_A 415 QIVILSQVLANEVNIGYEDMNNQQVLKFNGIP--IRNIHHLAHLIDMCKDKYLVFEFE-DNYVA 475 (539)
T ss_dssp CCEEEEEECCCGGGTTCSSCCSEEEEEETTEE--CCSHHHHHHHHHTCCSSEEEEEET-TSCEE
T ss_pred eEEEEEEecCCchhhhcCCCCCCEEEeECCEE--cCCHHHHHHHHHHcCCCeEEEEEC-CCEEE
Confidence 36789999999999999999999999999999 999999999999888777776643 44443
No 202
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=93.89 E-value=0.15 Score=27.97 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301 4 TNLKAEIMSLMEKRSALEADMNAIIDRLS 32 (195)
Q Consensus 4 ~~~~~~~~~l~~~k~~iE~el~~~~~~L~ 32 (195)
.++-+++.+|+.++.++|+|...|-+.|.
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 35778999999999999999999999984
No 203
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=92.91 E-value=0.24 Score=27.00 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301 4 TNLKAEIMSLMEKRSALEADMNAIIDRLS 32 (195)
Q Consensus 4 ~~~~~~~~~l~~~k~~iE~el~~~~~~L~ 32 (195)
.++-+++.+|+.++.++|+|...|.+.|.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 36778999999999999999999999984
No 204
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=92.83 E-value=0.27 Score=26.73 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRLS 32 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~ 32 (195)
++-+++.+|+.++.++|.|...+-+.|.
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 5678999999999999999999999984
No 205
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=91.38 E-value=0.5 Score=25.79 Aligned_cols=28 Identities=11% Similarity=0.181 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRLS 32 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~ 32 (195)
++-+++.+|+.++.++|.|...+-+.|.
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 5678999999999999999999999884
No 206
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=91.06 E-value=0.56 Score=25.67 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301 4 TNLKAEIMSLMEKRSALEADMNAIIDRLS 32 (195)
Q Consensus 4 ~~~~~~~~~l~~~k~~iE~el~~~~~~L~ 32 (195)
.++-+++.+|..++.++|.|...+-+.|.
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 35778999999999999999999999984
No 207
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=90.96 E-value=0.51 Score=25.85 Aligned_cols=28 Identities=11% Similarity=0.267 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRLS 32 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~ 32 (195)
++-+++.+|+.++.++|.|...+-+.|.
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 5778999999999999999999999884
No 208
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=90.75 E-value=0.61 Score=25.32 Aligned_cols=28 Identities=11% Similarity=0.023 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRLS 32 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~ 32 (195)
++-+++.+|..++.++|.|+..+.+.|-
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 5678999999999999999999999883
No 209
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=88.87 E-value=1 Score=24.62 Aligned_cols=27 Identities=7% Similarity=0.119 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRL 31 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L 31 (195)
++-+++.+|..++..+|.|+..+...|
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 567899999999999999999999988
No 210
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=88.48 E-value=1.1 Score=24.41 Aligned_cols=29 Identities=10% Similarity=0.166 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301 4 TNLKAEIMSLMEKRSALEADMNAIIDRLS 32 (195)
Q Consensus 4 ~~~~~~~~~l~~~k~~iE~el~~~~~~L~ 32 (195)
.++-+++.+|..++.++|.|...|.+.|-
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 35778999999999999999999998883
No 211
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=87.83 E-value=1.3 Score=24.51 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~~ 33 (195)
++.+++.+|..++.++|.|...|-+.|.+
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 57789999999999999999999998854
No 212
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=87.66 E-value=1.2 Score=24.68 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~~ 33 (195)
++-+++.+|..++.++|.|...|...|.+
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 56789999999999999999999998854
No 213
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=74.05 E-value=4.9 Score=26.82 Aligned_cols=30 Identities=17% Similarity=0.405 Sum_probs=27.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301 3 GTNLKAEIMSLMEKRSALEADMNAIIDRLS 32 (195)
Q Consensus 3 ~~~~~~~~~~l~~~k~~iE~el~~~~~~L~ 32 (195)
=+.+..++.+|.+++++++++|..+.+-|.
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367889999999999999999999998885
No 214
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=58.26 E-value=36 Score=30.57 Aligned_cols=15 Identities=20% Similarity=0.534 Sum_probs=14.5
Q ss_pred CCCCCCEEEEECCee
Q 029301 127 GLQLGDQVLKFGTVE 141 (195)
Q Consensus 127 GL~~GD~I~~ing~~ 141 (195)
++..||.|++|||.+
T Consensus 109 ~I~vGdEIlsING~p 123 (583)
T 3dor_A 109 EIRVGDELLEVDGAP 123 (583)
T ss_dssp SSCTTCEEEEETTEE
T ss_pred CCCCCCEEEEECCcc
Confidence 799999999999998
No 215
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=54.62 E-value=22 Score=21.68 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301 7 KAEIMSLMEKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 7 ~~~~~~l~~~k~~iE~el~~~~~~L~~ 33 (195)
..++..|+.-|-.+|.||...-..|+.
T Consensus 27 ~~eYq~LlniK~~Le~EIatYRkLLEg 53 (59)
T 1gk6_A 27 KKLVGDLLNVKMALDIEIATYRKLLEG 53 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 457899999999999999999999974
No 216
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=51.98 E-value=33 Score=20.51 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~~ 33 (195)
.++.+..+|.++-.++.++++++.+-|..
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46778888888888888888888887764
No 217
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=51.78 E-value=33 Score=20.19 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~~ 33 (195)
.+-.++.+|...=++.|-||+.|..+|..
T Consensus 15 ~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 15 QLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 34568889999999999999999999987
No 218
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=50.05 E-value=27 Score=22.43 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301 7 KAEIMSLMEKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 7 ~~~~~~l~~~k~~iE~el~~~~~~L~~ 33 (195)
..++.+|+.-|-.+|.||...-..|+.
T Consensus 32 l~EYq~LlniKl~Le~EIatYRkLLEG 58 (74)
T 2xv5_A 32 LDEYQELLDIKLALDMEIHAYRKLLEG 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 458899999999999999999999974
No 219
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.95 E-value=26 Score=23.87 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 029301 15 EKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 15 ~~k~~iE~el~~~~~~L~~ 33 (195)
..|+.||.||+.|..-|..
T Consensus 47 ~~~~~ie~ElEeLTasLFe 65 (97)
T 2eqb_B 47 EEADKLNKEVEDLTASLFD 65 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555666666666655543
No 220
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=48.37 E-value=30 Score=22.91 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301 7 KAEIMSLMEKRSALEADMNAIIDRLS 32 (195)
Q Consensus 7 ~~~~~~l~~~k~~iE~el~~~~~~L~ 32 (195)
-+...+|.++|.++|.+|..+.+.|+
T Consensus 62 Ee~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 62 EDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667888899999999999988875
No 221
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=46.15 E-value=41 Score=20.32 Aligned_cols=31 Identities=29% Similarity=0.306 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQSNG 36 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~~~~~ 36 (195)
.+-.++.+|...=.+.|-||+.|...|.. +|
T Consensus 22 ~L~~kv~~Le~~c~e~eQEieRL~~LLkq-Hg 52 (58)
T 3a2a_A 22 QLAAKIQHLEFSCSEKEQEIERLNKLLRQ-HG 52 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC
Confidence 45678889988999999999999999977 54
No 222
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.54 E-value=38 Score=23.02 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRLS 32 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~ 32 (195)
.+|+++.+|..+...++.++..|.+-|.
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~ 36 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIA 36 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5678888888888888888888876664
No 223
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=41.20 E-value=44 Score=21.76 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301 7 KAEIMSLMEKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 7 ~~~~~~l~~~k~~iE~el~~~~~~L~~ 33 (195)
..++..|+.-|-.+|.||...-..|+.
T Consensus 53 ~~EYq~LlnvK~~Ld~EIatYRkLLEG 79 (84)
T 1gk4_A 53 LREYQDLLNVKMALDIEIATYRKLLEG 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 457889999999999999999988863
No 224
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=38.59 E-value=43 Score=21.94 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301 7 KAEIMSLMEKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 7 ~~~~~~l~~~k~~iE~el~~~~~~L~~ 33 (195)
..++..|+.-|-.+|.||...-..|+.
T Consensus 55 l~EYq~LlnvK~~Le~EIatYRkLLEG 81 (86)
T 1x8y_A 55 LDEYQELLDIKLALDMEIHAYRKLLEG 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 457888999999999999988888863
No 225
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=36.81 E-value=53 Score=19.87 Aligned_cols=26 Identities=12% Similarity=0.050 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301 7 KAEIMSLMEKRSALEADMNAIIDRLS 32 (195)
Q Consensus 7 ~~~~~~l~~~k~~iE~el~~~~~~L~ 32 (195)
+..+..|.++-..+|.+|..+.+.|+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34578899999999999999988775
No 226
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=36.54 E-value=49 Score=20.39 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRLS 32 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~ 32 (195)
++..++.+|..+...|+++++.|-+.|.
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556788888888888888888877663
No 227
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=34.16 E-value=49 Score=24.06 Aligned_cols=30 Identities=7% Similarity=0.221 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301 4 TNLKAEIMSLMEKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 4 ~~~~~~~~~l~~~k~~iE~el~~~~~~L~~ 33 (195)
.++.+.+.+|.++.+++|+|++.+..-|..
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999998876644
No 228
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=33.94 E-value=64 Score=21.64 Aligned_cols=28 Identities=11% Similarity=0.251 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029301 4 TNLKAEIMSLMEKRSALEADMNAIIDRL 31 (195)
Q Consensus 4 ~~~~~~~~~l~~~k~~iE~el~~~~~~L 31 (195)
+.+..+|.+|.+.|..+.++|.++-.-+
T Consensus 21 ~~L~~eL~~lEke~~~l~~el~~le~E~ 48 (96)
T 3q8t_A 21 ERLIQELEDVEKNRKVVAENLEKVQAEA 48 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3567789999999999999998876654
No 229
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=33.91 E-value=55 Score=17.30 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 029301 9 EIMSLMEKRSALEADMNAIIDRL 31 (195)
Q Consensus 9 ~~~~l~~~k~~iE~el~~~~~~L 31 (195)
++...-++...||.||+++-+..
T Consensus 3 kiaaikeeqaaieeeiqaikeei 25 (36)
T 1bb1_B 3 KIAAIKEEQAAIEEEIQAIKEEI 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667778888888776543
No 230
>2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} SCOP: h.1.31.1
Probab=33.87 E-value=67 Score=18.27 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029301 6 LKAEIMSLMEKRSALEADMNAIIDRL 31 (195)
Q Consensus 6 ~~~~~~~l~~~k~~iE~el~~~~~~L 31 (195)
+++++.++..+++++-.+|+...+-|
T Consensus 2 S~~eL~~~l~~qee~n~~Le~YID~L 27 (42)
T 2d7c_C 2 SRDELMEAIQKQEEINFRLQDYIDRI 27 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888877643
No 231
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=31.64 E-value=34 Score=24.54 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=19.4
Q ss_pred CCceEEEEEcCCChhhhcCCCCCCEEE
Q 029301 109 RPFAVIDEITDASPAAEDGLQLGDQVL 135 (195)
Q Consensus 109 ~~~~~V~~V~~~SpA~~aGL~~GD~I~ 135 (195)
.+..+|.++..|. +++.||++||.|.
T Consensus 100 ~~a~~VLEl~aG~-~~~~gi~~Gd~v~ 125 (136)
T 3pjy_A 100 EPVAYVLELNAGT-VKRLGVSPGDRLE 125 (136)
T ss_dssp SCEEEEEEEETTH-HHHHTCCTTCEEE
T ss_pred CceeEEEEeCcCh-HHhcCCCCCCEEE
Confidence 4555788886655 5667999999985
No 232
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=31.62 E-value=26 Score=19.37 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRL 31 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L 31 (195)
.++.+++.|..+.+..|.++..+...|
T Consensus 8 avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 8 AVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467799999999999999998887766
No 233
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=30.34 E-value=1.2e+02 Score=20.52 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~~ 33 (195)
.++.++..|...++.+..+++.|-..|+.
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999998865
No 234
>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} SCOP: c.56.5.3 c.50.1.1
Probab=29.32 E-value=18 Score=31.94 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=23.3
Q ss_pred EEEEcCCChhhhcCCCCCCEEEEECCee
Q 029301 114 IDEITDASPAAEDGLQLGDQVLKFGTVE 141 (195)
Q Consensus 114 V~~V~~~SpA~~aGL~~GD~I~~ing~~ 141 (195)
|.-..+|.|...| .+|||+|++.||+.
T Consensus 319 ~i~~~ENm~sg~A-~rPgDVits~~GkT 345 (503)
T 1gyt_A 319 VLAGCENMPGGRA-YRPGDVLTTMSGQT 345 (503)
T ss_dssp EEEEEEECCSTTC-CCTTCEEECTTSCE
T ss_pred EEEeeccCCCCCC-CCCCCEEEeCCCcE
Confidence 3455679999888 99999999999998
No 235
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=29.04 E-value=71 Score=21.41 Aligned_cols=23 Identities=22% Similarity=0.461 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 029301 5 NLKAEIMSLMEKRSALEADMNAI 27 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~ 27 (195)
++-+++.+|+.+|..=|.+|.+|
T Consensus 56 dLNDEINkL~rEK~~WE~rI~eL 78 (92)
T 1x4t_A 56 DLNDEINKLLREKGHWEVRIKEL 78 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45579999999999999999654
No 236
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=28.27 E-value=75 Score=17.09 Aligned_cols=25 Identities=4% Similarity=0.286 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029301 6 LKAEIMSLMEKRSALEADMNAIIDR 30 (195)
Q Consensus 6 ~~~~~~~l~~~k~~iE~el~~~~~~ 30 (195)
+...+.+..++=..||..|+.+.+.
T Consensus 8 m~~Rl~kVE~qv~~md~KLd~l~~~ 32 (33)
T 2ovc_A 8 MMGRVVKVEKQVQSIEHKLDLLLGF 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4557888888888899998888764
No 237
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=27.50 E-value=96 Score=20.73 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301 7 KAEIMSLMEKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 7 ~~~~~~l~~~k~~iE~el~~~~~~L~~ 33 (195)
..++..|+.-|-.+|.||...-..|+.
T Consensus 64 l~EYq~LlnvKl~Le~EIatYrkLLEG 90 (95)
T 3mov_A 64 LNDYEQLLDVKLALDMEISAYRKLLEG 90 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 346788999999999999999888864
No 238
>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962 aminopeptidase, hydrolase, manganese, metal-binding, protea structural genomics; HET: PGE PG4; 1.80A {Coxiella burnetii}
Probab=27.32 E-value=21 Score=31.36 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=23.4
Q ss_pred EEEEcCCChhhhcCCCCCCEEEEECCee
Q 029301 114 IDEITDASPAAEDGLQLGDQVLKFGTVE 141 (195)
Q Consensus 114 V~~V~~~SpA~~aGL~~GD~I~~ing~~ 141 (195)
|.-..+|.|...| .+|||+|++.||+.
T Consensus 299 ii~~~ENm~sg~A-~rPgDVits~~GkT 325 (482)
T 3ij3_A 299 LIPAVENAIGSRS-YRPGDVVQTRARKT 325 (482)
T ss_dssp EEEEEEECCSTTC-CCTTCEEECTTSCE
T ss_pred EEEeeccCCCCCC-CCCCCEEEeCCCCE
Confidence 3455679999888 99999999999998
No 239
>3jru_B Probable cytosol aminopeptidase; bacterial blight, XOO0834, PEPA, xanthomonas oryzae PV. ORYZ KACC10331, hydrolase, manganese; 2.60A {Xanthomonas oryzae PV}
Probab=26.71 E-value=21 Score=31.36 Aligned_cols=26 Identities=4% Similarity=0.019 Sum_probs=22.8
Q ss_pred EEEcCCChhhhcCCCCCCEEEEECCee
Q 029301 115 DEITDASPAAEDGLQLGDQVLKFGTVE 141 (195)
Q Consensus 115 ~~V~~~SpA~~aGL~~GD~I~~ing~~ 141 (195)
.-..+|.|...| .+|||+|++.||+.
T Consensus 312 i~~~ENm~sg~A-~rPgDVit~~~G~T 337 (490)
T 3jru_B 312 VPAVENAIDGNA-YRPSDVITSMSGKT 337 (490)
T ss_dssp EEEEEECCSTTC-CCTTCEEECTTSCE
T ss_pred EEeeccCCCCCC-CCCCCEEEecCCcE
Confidence 345679999888 99999999999998
No 240
>3kzw_A Cytosol aminopeptidase; hydrolase, manganese binding, protease, structural genomics; 2.70A {Staphylococcus aureus subsp}
Probab=25.54 E-value=23 Score=31.38 Aligned_cols=26 Identities=4% Similarity=-0.034 Sum_probs=22.8
Q ss_pred EEEcCCChhhhcCCCCCCEEEEECCee
Q 029301 115 DEITDASPAAEDGLQLGDQVLKFGTVE 141 (195)
Q Consensus 115 ~~V~~~SpA~~aGL~~GD~I~~ing~~ 141 (195)
....+|.|...| .+|||+|++.||+.
T Consensus 333 i~~~ENm~sg~A-~rPgDVits~~GkT 358 (515)
T 3kzw_A 333 LACAENMINEAS-MKPDDVFTALSGET 358 (515)
T ss_dssp EEEEEECCCTTC-CCTTCEEECTTSCE
T ss_pred EEeeccCCCCCC-CCCCCEEEeCCCCE
Confidence 445678999888 99999999999998
No 241
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=25.28 E-value=1.1e+02 Score=20.25 Aligned_cols=27 Identities=11% Similarity=0.404 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRL 31 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L 31 (195)
++|..+..+...|..++.|+..+.+.+
T Consensus 60 ~Lr~~i~~~~~ek~~l~~e~dnl~~~~ 86 (93)
T 3s4r_A 60 ELRRQVDQLTNDKARVEVERDNLAEDI 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788888888888887766554
No 242
>2wmm_A Chromosome partition protein MUKB; cell division, DNA condensation, nucleotide-binding, cell cycle, coiled coil, ATP-binding, DNA-binding, SMC; 2.30A {Escherichia coli}
Probab=25.11 E-value=64 Score=23.80 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCC
Q 029301 11 MSLMEKRSALEADMNAIIDRLSQSNG 36 (195)
Q Consensus 11 ~~l~~~k~~iE~el~~~~~~L~~~~~ 36 (195)
.+|.++|.+||.||+.|. .|+|
T Consensus 5 d~~~~~k~~l~~qI~rLs----qp~G 26 (162)
T 2wmm_A 5 DEVGAHKNAVDEEIERLS----QPGG 26 (162)
T ss_dssp HHHHHHHHHHHHHHHHHT----CSCC
T ss_pred HHHHHHHHHHHHHHHHhc----CCCC
Confidence 467889999999988765 6654
No 243
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=25.08 E-value=89 Score=23.34 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~~ 33 (195)
++.+.+..|...|+.+|.++..+...|..
T Consensus 52 ELq~~~~~L~~~k~~Leke~~~LQa~L~q 80 (168)
T 3o0z_A 52 ELQERNRILENSKSQTDKDYYQLQAILEA 80 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999998865
No 244
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=25.05 E-value=98 Score=21.48 Aligned_cols=26 Identities=4% Similarity=0.152 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029301 6 LKAEIMSLMEKRSALEADMNAIIDRL 31 (195)
Q Consensus 6 ~~~~~~~l~~~k~~iE~el~~~~~~L 31 (195)
+++++..|..+.+.|+.+|..+...+
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~~ 27 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKLH 27 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 67899999999999999999888765
No 245
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.99 E-value=47 Score=23.93 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 029301 16 KRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 16 ~k~~iE~el~~~~~~L~~ 33 (195)
.|+.||.||+.|..-|..
T Consensus 68 ~~~~ie~ElE~LTasLFe 85 (135)
T 2e7s_A 68 EADKLNKEVEDLTASLFD 85 (135)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788888889888887765
No 246
>3pei_A Cytosol aminopeptidase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich; HET: MSE; 2.70A {Francisella tularensis subsp}
Probab=24.87 E-value=24 Score=30.96 Aligned_cols=27 Identities=11% Similarity=0.231 Sum_probs=18.0
Q ss_pred EEEEcCCChhhhcCCCCCCEEEEECCee
Q 029301 114 IDEITDASPAAEDGLQLGDQVLKFGTVE 141 (195)
Q Consensus 114 V~~V~~~SpA~~aGL~~GD~I~~ing~~ 141 (195)
|....+|.|...| .+|||+|++.||+.
T Consensus 300 ~i~~~ENm~sg~A-~rPgDVits~~G~T 326 (486)
T 3pei_A 300 VMGLAENAVDARS-YRPGDVLKSMKGIT 326 (486)
T ss_dssp EEEEEEC-------CCTTEEEECTTCCE
T ss_pred EEEeeccCCCCCC-CCCCCEEEeCCCcE
Confidence 3455689999988 99999999999998
No 247
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=24.09 E-value=1.2e+02 Score=20.86 Aligned_cols=56 Identities=14% Similarity=0.136 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCchhhhhhHhhHhHhh
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAGD 69 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~~~~~~~~~~~lvd~eG~Pr~d~dl~~vr~~r~~i~~l 69 (195)
-+++.+++|++.....|.||..-..-|+..... .+=- .+|++.-++...+.-+-.|
T Consensus 32 ~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~--------~E~D-PDevNK~tl~~R~~~Vsal 87 (107)
T 2k48_A 32 FTMSTLQELQENITAHEQQLVTARQKLKDAEKA--------VEVD-PDDVNKSTLQNRRAAVSTL 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHC-CCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hcCC-CcHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999888753210 0111 2345555655555555444
No 248
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=24.04 E-value=1.3e+02 Score=19.22 Aligned_cols=27 Identities=4% Similarity=0.083 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301 6 LKAEIMSLMEKRSALEADMNAIIDRLS 32 (195)
Q Consensus 6 ~~~~~~~l~~~k~~iE~el~~~~~~L~ 32 (195)
+..+..+|..+++++..+...|...|.
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666677776666666664
No 249
>2hc9_A Leucine aminopeptidase 1; carbonate, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics; 1.85A {Caenorhabditis elegans} PDB: 2hb6_A
Probab=23.73 E-value=26 Score=30.80 Aligned_cols=27 Identities=7% Similarity=-0.071 Sum_probs=23.4
Q ss_pred EEEEcCCChhhhcCCCCCCEEEEECCee
Q 029301 114 IDEITDASPAAEDGLQLGDQVLKFGTVE 141 (195)
Q Consensus 114 V~~V~~~SpA~~aGL~~GD~I~~ing~~ 141 (195)
+.-..+|+|...| .+|||+|++-||+.
T Consensus 301 ~l~~~ENm~sg~A-~rPgDVits~~GkT 327 (491)
T 2hc9_A 301 CLCIVENNVSPIA-NKPDDIIKMLSGKT 327 (491)
T ss_dssp EEEEEEECCSTTS-CCTTCEEECTTSCE
T ss_pred EEEeeecCCCCCC-CCCCCEEEeCCCcE
Confidence 3455679999888 99999999999998
No 250
>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A {Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A* 3t8w_A*
Probab=23.37 E-value=24 Score=31.28 Aligned_cols=27 Identities=7% Similarity=0.149 Sum_probs=23.2
Q ss_pred EEEEcCCChhhhcCCCCCCEEEEECCee
Q 029301 114 IDEITDASPAAEDGLQLGDQVLKFGTVE 141 (195)
Q Consensus 114 V~~V~~~SpA~~aGL~~GD~I~~ing~~ 141 (195)
|.-..+|.|...| .+|||+|++.||+.
T Consensus 343 vi~~~ENm~sg~A-~rPgDVit~~~GkT 369 (528)
T 3kr4_A 343 LSAVCENMVSKNS-YRPGDIITASNGKT 369 (528)
T ss_dssp EEEEEEECCSTTS-CCTTCEEECTTSCE
T ss_pred EEEeeccCCCCCC-CCCCCEEEeCCCcE
Confidence 3455678999888 99999999999998
No 251
>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase (A aminoacylpeptide); 1.60A {Bos taurus} SCOP: c.56.5.3 c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A 1bpm_A 1bll_E* 2j9a_A* 2ewb_A*
Probab=23.06 E-value=23 Score=31.15 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=22.9
Q ss_pred EEEcCCChhhhcCCCCCCEEEEECCee
Q 029301 115 DEITDASPAAEDGLQLGDQVLKFGTVE 141 (195)
Q Consensus 115 ~~V~~~SpA~~aGL~~GD~I~~ing~~ 141 (195)
.-..+|+|...| .+|||+|++-||+.
T Consensus 300 i~~~ENm~sg~A-~rPgDVits~~GkT 325 (484)
T 1lam_A 300 APLCENMPSGKA-NKPGDVVRARNGKT 325 (484)
T ss_dssp EEEEEECCSTTS-CCTTEEEECTTSCE
T ss_pred EEeeccCCCCCC-CCCCCEEEeCCCcE
Confidence 345679999888 99999999999998
No 252
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=22.88 E-value=1.4e+02 Score=18.54 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029301 6 LKAEIMSLMEKRSALEADMNAIIDRL 31 (195)
Q Consensus 6 ~~~~~~~l~~~k~~iE~el~~~~~~L 31 (195)
.++++.++..+++++-.+|+...+-|
T Consensus 24 s~deL~~~l~eqee~n~~Le~YID~L 49 (64)
T 2hv8_D 24 SRDELMEAIQKQEEINFRLQDYIDRI 49 (64)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888878888777633
No 253
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.79 E-value=1.3e+02 Score=19.81 Aligned_cols=27 Identities=4% Similarity=0.116 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301 6 LKAEIMSLMEKRSALEADMNAIIDRLS 32 (195)
Q Consensus 6 ~~~~~~~l~~~k~~iE~el~~~~~~L~ 32 (195)
+..++..|.++.+.++.+++.+-.-|.
T Consensus 77 i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 77 LQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777777766666553
No 254
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=22.34 E-value=81 Score=18.87 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029301 6 LKAEIMSLMEKRSALEADMNAIID 29 (195)
Q Consensus 6 ~~~~~~~l~~~k~~iE~el~~~~~ 29 (195)
+.+++.+|.++..+++.+++.+.+
T Consensus 32 v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667777777777777766543
No 255
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=22.25 E-value=1.4e+02 Score=18.00 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRL 31 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L 31 (195)
.+-+++..|..+..++..+++.|...+
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888888888888877655
No 256
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.58 E-value=1.3e+02 Score=20.00 Aligned_cols=29 Identities=7% Similarity=0.244 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~L~~ 33 (195)
+++.++.+|...+.+++.++..+...|..
T Consensus 14 ~~~~~l~~L~~~~~~l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 14 TIEEERNEITQRIGELKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888899999888887765543
No 257
>3h8g_F Cytosol aminopeptidase; hydrolase, manganese, metal-binding, proteas; HET: BES; 1.50A {Pseudomonas putida} PDB: 3h8e_A 3h8f_A*
Probab=21.27 E-value=26 Score=30.89 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=23.2
Q ss_pred EEEEcCCChhhhcCCCCCCEEEEECCee
Q 029301 114 IDEITDASPAAEDGLQLGDQVLKFGTVE 141 (195)
Q Consensus 114 V~~V~~~SpA~~aGL~~GD~I~~ing~~ 141 (195)
|.-..+|+|...| .+|||+|++.||+.
T Consensus 316 ~i~~~ENm~~g~A-~rPgDVit~~~G~T 342 (497)
T 3h8g_F 316 LLACAENMPSGGA-TRPGDIVTTMSGQT 342 (497)
T ss_dssp EEEEEEECCSTTS-CCTTEEEECTTSCE
T ss_pred EEEeeccCCCCCC-CCCCCEEEeCCCcE
Confidence 3445679999888 99999999999998
No 258
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.00 E-value=1e+02 Score=22.71 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 029301 14 MEKRSALEADMNAIIDRLSQ 33 (195)
Q Consensus 14 ~~~k~~iE~el~~~~~~L~~ 33 (195)
...|+.||.||+.|..-|..
T Consensus 78 E~~~~~ie~ElEeLTasLFe 97 (154)
T 2ocy_A 78 EEEADKLNKEVEDLTASLFD 97 (154)
T ss_dssp HTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888887765
No 259
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.72 E-value=1.5e+02 Score=17.97 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029301 5 NLKAEIMSLMEKRSALEADMNAIIDR 30 (195)
Q Consensus 5 ~~~~~~~~l~~~k~~iE~el~~~~~~ 30 (195)
.+..++.+|..+..+++.+++.|...
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888877776553
No 260
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.48 E-value=1.5e+02 Score=19.79 Aligned_cols=27 Identities=11% Similarity=0.332 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029301 6 LKAEIMSLMEKRSALEADMNAIIDRLS 32 (195)
Q Consensus 6 ~~~~~~~l~~~k~~iE~el~~~~~~L~ 32 (195)
+..++..|.++.+.++.+++.+-..|.
T Consensus 82 ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 82 LEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777776666664
No 261
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.42 E-value=1e+02 Score=26.29 Aligned_cols=12 Identities=8% Similarity=-0.380 Sum_probs=10.0
Q ss_pred CCcHHHHHHHHh
Q 029301 144 DNLLERLAAEGR 155 (195)
Q Consensus 144 v~~~~~l~~~l~ 155 (195)
+.+.+++..++.
T Consensus 234 v~s~~e~~~ll~ 245 (412)
T 3u06_A 234 VLDPNHLRHLMH 245 (412)
T ss_dssp CCSHHHHHHHHH
T ss_pred eCCHHHHHHHHH
Confidence 888999988775
No 262
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=20.27 E-value=55 Score=25.55 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=32.0
Q ss_pred hhhcCCCCCCEEEEECCeeCC---CCcHHHHHHHHhhCCCCeEEEEEEE
Q 029301 123 AAEDGLQLGDQVLKFGTVEAG---DNLLERLAAEGRKNQGNAVPVVIMR 168 (195)
Q Consensus 123 A~~aGL~~GD~I~~ing~~~~---v~~~~~l~~~l~~~~g~~v~l~V~R 168 (195)
+++.|+..|..++++||.+.+ ..+-.++...+.+..+.++-+....
T Consensus 52 ~~~d~~~~~~~~~~~ng~~~~~~~~~d~~~v~~~iigk~N~PLyir~f~ 100 (219)
T 2j3t_D 52 GQRDGIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGR 100 (219)
T ss_dssp CCCTTCCTTCEEEEETTEECBTTBCTTSSBHHHHTTCGGGCSEEEEEEC
T ss_pred cccCCccccceeeecCCccCCCcccccCceeeeeeecCCCCceEEEecC
Confidence 456799999999999999911 1222356666766667777776554
Done!