Citrus Sinensis ID: 029302

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MDSSKLSALLIICMLFISTATPILGCGTCGKPHPKHRKPRQPRPIGLPPIVKPPVPLPPVTLPPVTVPPIKPPVDLPTLPPVALPPVLPNPPSARKPCPCSYTPPPPAAATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVTCGKTPPAGFTCTL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccEEccccccccccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHccccccccEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHEHHHHcccEEEEccccccccccHHHHHHHcHHHHHHHHHHHHHHHcccEEEccEEEEEEEEcccccccccEccc
Coil and Loop (DISEMBL)
MDSSKLSALLIICMLFIstatpilgcgtcgkphpkhrkprqprpiglppivkppvplppvtlppvtvppikppvdlptlppvalppvlpnppsarkpcpcsytppppaaatcpidtlklgACVDLLGGlvhiglgdpvvnqccpvLQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVtcgktppagftctl
Flexible Loop (DISEMBL)
MDSSKLSALLIICMLFISTATPILGCGTCGKPHPKHRKPRQPRPIGLPPIVKPPVPLPPVTLPPVTVPPIKPPVDLPTLPPVALPPVLPNPPSARKPCPCSYTPPPPAAATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVTCGKTPPAGFTCTL
Low Complexity Region (SEG)
MDSSKLSALLIICMLFISTATPILGCGTCGkphpkhrkprqprpIGLppivkppvplppvtlppvtvppikppvdlptlppvalppvlpnppSARKpcpcsytppppaaatcpIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVclcttlklkllnlniylplalqllVTCGKTPPAGFTCTL
Disordered region (IsUnstruct)
******SALLIICMLFISTATPILGCGTCG******************************************************************************AATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVTCGKTPPAGF****
Disordered Region (DISOPRED)
****KLS*LLIICMLFISTATPIL*******************************PLPPVTLPP*T************************************************DTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVTCGKTPPAGFTCTL
Disordered Region (DISEMBL)
MDSSKLSALLIICMLFISTATPILGCGTC***********QPRPIGLPPIVKPPVPLPPVTLPPVTVPPIKPPVDLPTLPPVALPPVLPNPPSARKPCPCSYTPPPPAAATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVTCGKTPPAGFTCTL
Disordered Region (DISPRO)
**SSKLSALLIICMLFISTATPILGCGTCGKPHPKHRKPRQPRPIGLPPIVKPPVPLPPVTLPPVTVPPIKPPVDLPTLPPVALPPVLP********************ATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVTCGKTPPAGFTCTL
Transmembrane Helix (TMHMM)
oooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDSSKLSALLIICMLFISTATPILGCGTCGKPHPKHRKPRQPRPIGLPPIVKPPVPLPPVTLPPVTVPPIKPPVDLPTLPPVALPPVLPNPPSARKPCPCSYTPPPPAAATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVTCGKTPPAGFTCTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
Q00451	346	36.4 kDa proline-rich pro	N/A	no	0.441	0.248	0.655	2e-19
P14009	137	14 kDa proline-rich prote	N/A	no	0.446	0.635	0.511	5e-15
Q8RW93	128	Putative lipid-binding pr	no	no	0.507	0.773	0.472	2e-14
Q01595	129	Cortical cell-delineating	N/A	no	0.425	0.643	0.471	2e-13
P24337	80	Hydrophobic seed protein	no	no	0.343	0.837	0.415	3e-05

>sp|Q00451|PRF1_SOLLC 36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/87 (65%), Positives = 70/87 (80%), Gaps = 1/87 (1%)

Query: 108 AAATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLL 167
           A  TCPID LKLGACVD+LGGL+HIG+G      CCP+L GLV+L+AA+CLCTT++LKLL
Sbjct: 257 AQPTCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLL 316

Query: 168 NLNIYLPLALQLLV-TCGKTPPAGFTC 193
           N+NI LP+ALQ+L+  CGK PP  F C
Sbjct: 317 NINIILPIALQVLIDDCGKYPPKDFKC 343

Solanum lycopersicum (taxid: 4081)

>sp|P14009|14KD_DAUCA 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1

 Score = 80.9 bits (198), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 57/88 (64%), Gaps = 1/88 (1%)

Query: 108 AAATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLL 167
           +A  CP D LKLG C D+L  + ++ +G P    CC +L+GLV LEAAVCLCT +K  +L
Sbjct: 50  SAGKCPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANIL 109

Query: 168 NLNIYLPLALQL-LVTCGKTPPAGFTCT 194
             N+ LP+AL L L  CGK  P GF CT
Sbjct: 110 GKNLNLPIALSLVLNNCGKQVPNGFECT 137

May be connected with the initiation of embryogenesis or with the metabolic changes produced by the removal of auxins.

Daucus carota (taxid: 4039)

>sp|Q8RW93|LBP65_ARATH Putative lipid-binding protein At4g00165 OS=Arabidopsis thaliana GN=At4g00165 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 65/108 (60%), Gaps = 9/108 (8%)

Query: 90  NPPSARKPCPCSYTPPPPAAAT--CPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQ 147
            P +  KPCP    PPP   AT  CP DTLK G C   LG LV   +G P   +CC +++
Sbjct: 26  TPGATVKPCP----PPPAKQATTKCPRDTLKFGVCGSWLG-LVSEVIGTPPSQECCSLIK 80

Query: 148 GLVELEAAVCLCTTLKLKLLNLN-IYLPLALQLLV-TCGKTPPAGFTC 193
           GL + EAAVCLCT LK  +L +  + +P+AL LL+ +CGK  P GF C
Sbjct: 81  GLADFEAAVCLCTALKTSILGVAPVKIPVALTLLLNSCGKNVPQGFVC 128

Arabidopsis thaliana (taxid: 3702)

>sp|Q01595|CCDP_MAIZE Cortical cell-delineating protein OS=Zea mays PE=2 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 59/87 (67%), Gaps = 4/87 (4%)

Query: 108 AAATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLL 167
           +   CPID LKL  C  +LG LV +GL  P   QCCP+L+GLV+L+AA+CLCT +K  +L
Sbjct: 44  SHGRCPIDALKLKVCAKVLG-LVKVGL--PQYEQCCPLLEGLVDLDAALCLCTAIKANVL 100

Query: 168 NLNIYLPLALQLLV-TCGKTPPAGFTC 193
            +++ +PL+L  ++  CG+  P  FTC
Sbjct: 101 GIHLNVPLSLNFILNNCGRICPEDFTC 127

Delineates a novel subset of developing cortical cells. It is probably involved in some aspect of transport of molecules to or from the vasculature.

Zea mays (taxid: 4577)

>sp|P24337|HPSE_SOYBN Hydrophobic seed protein OS=Glycine max PE=1 SV=1

 Score = 48.5 bits (114), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 10/77 (12%)

Query: 118 KLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLK-LKLLNLNIYLPLA 176
            L  C+++LGG     LG   V+ CC ++ GL ++EA VCLC  L+ L +LNLN  L L 
Sbjct: 10  DLSICLNILGG----SLG--TVDDCCALIGGLGDIEAIVCLCIQLRALGILNLNRNLQLI 63

Query: 177 LQLLVTCGKTPPAGFTC 193
           L    +CG++ P+  TC
Sbjct: 64  LN---SCGRSYPSNATC 77

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
225445607	266	PREDICTED: repetitive proline-rich cell	1.0	0.733	0.518	2e-49
224087088	198	predicted protein [Populus trichocarpa]	0.907	0.893	0.587	8e-49
356548502	227	PREDICTED: uncharacterized protein LOC10	0.984	0.845	0.591	3e-39
11139238	158	putative proline-rich protein [Solanum l	0.620	0.765	0.730	6e-37
255640923	229	unknown [Glycine max]	0.958	0.816	0.591	2e-36
48375046	195	putative proline-rich protein [Nicotiana	0.733	0.733	0.653	2e-35
356562969	190	PREDICTED: uncharacterized protein LOC54	0.958	0.984	0.651	6e-35
1794145	347	unnamed protein product [Daucus carota]	0.753	0.423	0.679	1e-34
145332667	1480	bifunctional inhibitor/lipid transfer pr	0.748	0.098	0.588	1e-33
326515766	352	predicted protein [Hordeum vulgare subsp	0.451	0.25	0.795	2e-33

>gi|225445607|ref|XP_002285432.1| PREDICTED: repetitive proline-rich cell wall protein 1 [Vitis vinifera]

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 138/266 (51%), Positives = 163/266 (61%), Gaps = 71/266 (26%)

Query: 1   MDSSKLSALLIICMLFISTATPILGCGTCGKPHPKHRKPRQPRP---------------- 44
           MDSSKLSAL +I  LFIS+ATPILGC  C KP P+H+ P   +P                
Sbjct: 1   MDSSKLSALFLIFTLFISSATPILGCAPCSKPPPQHKPPFHHKPPSHHKPPKGKPPITRP 60

Query: 45  ----------------------------------IGLPPIVKPPVPLPPVTLPPVTVPPI 70
                                             I +PPI  PP+  PP+T+PP+TVPPI
Sbjct: 61  PIVKPPITVPPVVPPIVKPPITLPPVVPPIVKPPITVPPITVPPIVKPPITVPPITVPPI 120

Query: 71  -KPPVDLP------------TLPPVALPPVL--------PNPPSARKPCPCSYTPPPPAA 109
            KPP+ +P            T+PP+ +PP++           P   KP   +  PPPPA+
Sbjct: 121 VKPPITVPPITVPPIVKPPVTVPPITVPPIIKPPITVPPVVTPPVNKPPVGTPCPPPPAS 180

Query: 110 ATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNL 169
           ATCPIDTLKLGACVDLLGGLVHIGLGDPV N+CCPVL GLVELEAAVCLCTTLK+KLLNL
Sbjct: 181 ATCPIDTLKLGACVDLLGGLVHIGLGDPVANECCPVLSGLVELEAAVCLCTTLKIKLLNL 240

Query: 170 NIYLPLALQLLVTCGKTPPAGFTCTL 195
           NIY+PLALQLL+TCGKTPP G+TCT+
Sbjct: 241 NIYVPLALQLLITCGKTPPPGYTCTV 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087088|ref|XP_002308060.1| predicted protein [Populus trichocarpa] gi|118486483|gb|ABK95081.1| unknown [Populus trichocarpa] gi|222854036|gb|EEE91583.1| predicted protein [Populus trichocarpa]

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 127/216 (58%), Positives = 145/216 (67%), Gaps = 39/216 (18%)

Query: 1   MDSSKLSALLIICMLFISTATPILGCGTCGKPHPKHRKPRQPRPIGLPPIVKPPVP---- 56
           MDS+K+SA L +CM+FIS+A P L CG+CGK HPK++ P+ P+     P +  P      
Sbjct: 1   MDSTKISAFLFLCMIFISSAAPTLDCGSCGK-HPKNKHPKTPKAPITLPPLPVPPIVKPP 59

Query: 57  -----------------LPPVTLPPVTVPPIKPPVDLPTLPPVALPPVLPNPPSARKPCP 99
                            LPPVTLPPVTVPPI       T+PPV          + + P  
Sbjct: 60  VTLPPLPVPPIVKPPVTLPPVTLPPVTVPPI-------TVPPV----------TTKPPKG 102

Query: 100 CSYTPPPPAAATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLC 159
               PPP    TCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVL GLVELEAAVCLC
Sbjct: 103 KPCPPPPSPKDTCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLTGLVELEAAVCLC 162

Query: 160 TTLKLKLLNLNIYLPLALQLLVTCGKTPPAGFTCTL 195
           TTLK+K LNLNIY+PLALQLLVTCGKTPP G+TC+L
Sbjct: 163 TTLKIKALNLNIYVPLALQLLVTCGKTPPPGYTCSL 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548502|ref|XP_003542640.1| PREDICTED: uncharacterized protein LOC100812759 [Glycine max]

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 136/230 (59%), Positives = 155/230 (67%), Gaps = 38/230 (16%)

Query: 1   MDSSKLSALLIICMLFISTATPILGCGTCGKPHPKHRKPRQPRPIGLPP---------IV 51
           M+SSK+ A L +CMLF+S+ATPILGCG CGKP  KH+  + P+   +P          IV
Sbjct: 1   MESSKIYAYLFLCMLFLSSATPILGCGYCGKPPKKHKPGKTPKTPTVPVVKPPVTIPPIV 60

Query: 52  KPPVPLPPVTLPPVTVPPI-KPPVDLPTLPPVA-----------------LPPVLPNPP- 92
           KPPV +PP+  PPVT+PPI  PPV +P +                     LPP+L  P  
Sbjct: 61  KPPVTIPPIVNPPVTIPPIVNPPVTIPPIVNPPVTVPPVVLPPIVKPPGFLPPILNPPST 120

Query: 93  -------SARKPCPCSYTPPPPAAATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPV 145
                      PCP    P  PA ATCPIDTLKLGACVDLLGGLVHIGLGDPV NQCCPV
Sbjct: 121 PTPSPGKGGNTPCP---PPKSPAQATCPIDTLKLGACVDLLGGLVHIGLGDPVANQCCPV 177

Query: 146 LQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVTCGKTPPAGFTCTL 195
           LQGLVELEAAVCLCTTLKLKLLNLNIY+PLALQLLV CGK+PP G+TC+L
Sbjct: 178 LQGLVELEAAVCLCTTLKLKLLNLNIYVPLALQLLVACGKSPPPGYTCSL 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11139238|gb|AAG31637.1| putative proline-rich protein [Solanum lycopersicum]

 Score =  159 bits (401), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 95/130 (73%), Positives = 105/130 (80%), Gaps = 9/130 (6%)

Query: 44  PIGLPPIVKPPVPLPPVTLPPVTVPPI-KPPVDLP--TLPPVALPPVLPNPPSARKPCPC 100
           P+G+PPIVKPPV LPPV +PPVTVPPI KPPVDLP   +PPV +PPV+   P  +KPCP 
Sbjct: 32  PVGIPPIVKPPVDLPPVGIPPVTVPPIVKPPVDLPPIGIPPVTVPPVIKPSPKGKKPCP- 90

Query: 101 SYTPPPPAAATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCT 160
                P   ATCPIDTLKLGACVDLLGGLVHIGLGDP VN+CCP+L GLVELEAA CLCT
Sbjct: 91  -----PTTKATCPIDTLKLGACVDLLGGLVHIGLGDPAVNECCPILSGLVELEAAACLCT 145

Query: 161 TLKLKLLNLN 170
           TLK+KLLNL 
Sbjct: 146 TLKVKLLNLQ 155

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255640923|gb|ACU20743.1| unknown [Glycine max]

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 133/225 (59%), Positives = 150/225 (66%), Gaps = 38/225 (16%)

Query: 1   MDSSKLSALLIICMLFISTATPILGCGTCGKPHPKHRKPRQPRPIGLPP---------IV 51
           M+SSK+ A L +CMLF+S+ATPILGCG CGKP  KH+  + P+   +P          IV
Sbjct: 1   MESSKIYAYLFLCMLFLSSATPILGCGYCGKPPKKHKPGKTPKTPTVPVVKPPVTIPPIV 60

Query: 52  KPPVPLPPVTLPPVTVPPI-KPPVDLPTLPPVA-----------------LPPVLPNPP- 92
           KPPV +PP+  PPVT+PPI  PPV +P +                     LPP+L  P  
Sbjct: 61  KPPVTIPPIVNPPVTIPPIVNPPVTIPPIVNPPVTVPPVVLPPIVKPPGFLPPILNPPST 120

Query: 93  -------SARKPCPCSYTPPPPAAATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPV 145
                      PCP    P  PA ATCPIDTLKLGACVDLLGGLVHIGLGDPV NQCCPV
Sbjct: 121 PTPSPGKGGNTPCP---PPKSPAQATCPIDTLKLGACVDLLGGLVHIGLGDPVANQCCPV 177

Query: 146 LQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVTCGKTPPAG 190
           LQGLVELEAAVCLCTTLKLKLLNLNIY+PLALQLLV CGK+PP G
Sbjct: 178 LQGLVELEAAVCLCTTLKLKLLNLNIYVPLALQLLVACGKSPPPG 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|48375046|gb|AAT42190.1| putative proline-rich protein [Nicotiana tabacum]

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/150 (65%), Positives = 115/150 (76%), Gaps = 7/150 (4%)

Query: 46  GLPPIVKPPVPLPPVTLPPVTVPPIKPPVDLPTLPPVALPPVLPNPPSARKPCPCSYTPP 105
           G+PP+  PPV  PP+ LPP+    +KPP++   LPP+ +PPV   P     P      PP
Sbjct: 53  GIPPVTVPPVLKPPIGLPPI----VKPPIN---LPPIGIPPVTVPPVITPSPKGKPCPPP 105

Query: 106 PPAAATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLK 165
           P   ATCPIDTLKLGACVDLLGGLVHIG+GDP VN+CCP+L GLVELEAA CLCTTLK+K
Sbjct: 106 PTTKATCPIDTLKLGACVDLLGGLVHIGIGDPAVNECCPILHGLVELEAAACLCTTLKVK 165

Query: 166 LLNLNIYLPLALQLLVTCGKTPPAGFTCTL 195
           LLNL I++PLALQLLVTCGKTPP G+TC+L
Sbjct: 166 LLNLKIFVPLALQLLVTCGKTPPPGYTCSL 195

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562969|ref|XP_003549740.1| PREDICTED: uncharacterized protein LOC547928 [Glycine max]

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 129/198 (65%), Positives = 150/198 (75%), Gaps = 11/198 (5%)

Query: 1   MDSSKLSALLIICMLFISTATPILGCGTCGKPHPKHRKPR---QPRPIGLPPIVKPPVPL 57
           M+SSK+ A L +CM+F+S+ATPILGCG CGKP  KH+  +    P+     P+VKPPV +
Sbjct: 1   MESSKIYAYLFLCMIFLSSATPILGCGYCGKPPKKHKPGKTPKTPKT----PVVKPPVTI 56

Query: 58  PPVTLPPVTVPPIKPPVDLPTLPPVALPPVLPNPPSARKPCPCSYTPPPPAAATCPIDTL 117
           PP+ +PPV +PPI  P  +    P+  PP  P       PCP    P  PA ATCPIDTL
Sbjct: 57  PPINVPPVVLPPIVKPPGILPPIPIINPPTTPGK-GGNTPCP---PPKSPAQATCPIDTL 112

Query: 118 KLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNIYLPLAL 177
           KLGACVDLLGGLVHIGLGDPV NQCCPVLQGLVE+EAAVCLCTTLKLKLLNLNIY+PLAL
Sbjct: 113 KLGACVDLLGGLVHIGLGDPVANQCCPVLQGLVEVEAAVCLCTTLKLKLLNLNIYVPLAL 172

Query: 178 QLLVTCGKTPPAGFTCTL 195
           QLLVTCGK+PP G+TC+L
Sbjct: 173 QLLVTCGKSPPPGYTCSL 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1794145|dbj|BAA19128.1| unnamed protein product [Daucus carota]

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/153 (67%), Positives = 114/153 (74%), Gaps = 6/153 (3%)

Query: 47  LPPIVKPPVPLPPVTLPPVTVPP-IKPPVDLP--TLPPVALPPVLP---NPPSARKPCPC 100
           LPP V PP  LPP  LPP  +PP + PP  LP   LPP   PPVLP    PPS   PCP 
Sbjct: 193 LPPGVLPPGVLPPGILPPGILPPGVLPPGILPPGILPPGVKPPVLPPTTKPPSPGTPCPP 252

Query: 101 SYTPPPPAAATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCT 160
               PP A  TCP+D LKLGACVD+LGGLVH+GLGDP VN+CCPVL GLVELEAAVCLCT
Sbjct: 253 GAKTPPSAPETCPLDALKLGACVDVLGGLVHVGLGDPNVNKCCPVLAGLVELEAAVCLCT 312

Query: 161 TLKLKLLNLNIYLPLALQLLVTCGKTPPAGFTC 193
           T+KL LLN+NI LP+ALQLL+TCGKTPP GFTC
Sbjct: 313 TIKLSLLNINIALPVALQLLITCGKTPPPGFTC 345

Source: Daucus carota

Species: Daucus carota

Genus: Daucus

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145332667|ref|NP_001078199.1| bifunctional inhibitor/lipid transfer protein/seed storage protein-like protein [Arabidopsis thaliana] gi|11994733|dbj|BAB03062.1| unnamed protein product [Arabidopsis thaliana] gi|332643072|gb|AEE76593.1| bifunctional inhibitor/lipid transfer protein/seed storage protein-like protein [Arabidopsis thaliana]

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/153 (58%), Positives = 108/153 (70%), Gaps = 7/153 (4%)

Query: 44   PIGLPPIVKPPVPLPPVTLPPVTVPPI-KPPVDLP--TLPPVALPPVLPNPPSARKPCPC 100
            P+  PPI KPP   PPV  PPV  PPI K PV  P  T PPVA  P+   PP A+ P   
Sbjct: 1330 PVATPPIAKPPGARPPVATPPVATPPIAKSPVATPPMTKPPVASSPIA-TPPIAKTPI-- 1386

Query: 101  SYTPPPPAAATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCT 160
              TPP     TCPIDTLKLG+CVDLLGGLVHIG+G     +CCPV++GLV+L+AAVCLCT
Sbjct: 1387 -ATPPTTMPKTCPIDTLKLGSCVDLLGGLVHIGIGKSAKEKCCPVVEGLVDLDAAVCLCT 1445

Query: 161  TLKLKLLNLNIYLPLALQLLVTCGKTPPAGFTC 193
            T+K KLLN+++ LP+AL++L+ CGK PP GF C
Sbjct: 1446 TIKAKLLNIDVILPIALEVLLNCGKNPPPGFKC 1478

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326515766|dbj|BAK07129.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/88 (79%), Positives = 82/88 (93%)

Query: 108 AAATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLL 167
           A  TCP+DTLKLGACVDLLGGLVHIGLGDPVVNQCCP+L+GL ELEAA CLCTT++LKLL
Sbjct: 265 ATQTCPVDTLKLGACVDLLGGLVHIGLGDPVVNQCCPLLEGLAELEAAACLCTTIRLKLL 324

Query: 168 NLNIYLPLALQLLVTCGKTPPAGFTCTL 195
           N+N+ LPLA+QLL+TCGKTPP G+TC++
Sbjct: 325 NINLVLPLAVQLLLTCGKTPPRGYTCSI 352

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
TAIR|locus:2041927	291	AT2G10940 [Arabidopsis thalian	0.420	0.281	0.548	1.9e-24
TAIR|locus:2203876	297	AT1G62500 [Arabidopsis thalian	0.410	0.269	0.537	2.8e-18
TAIR|locus:4010713767	1480	AT3G22142 "AT3G22142" [Arabido	0.410	0.054	0.487	1e-14
TAIR|locus:2090419	334	CWLP "cell wall-plasma membran	0.410	0.239	0.481	2.1e-14
TAIR|locus:2008880	137	ELP "extensin-like protein" [A	0.405	0.576	0.362	1.1e-12
TAIR|locus:2203886	149	AT1G62510 [Arabidopsis thalian	0.405	0.530	0.35	2.2e-12
TAIR|locus:2135545	129	AT4G12510 [Arabidopsis thalian	0.405	0.612	0.387	5.8e-12
TAIR|locus:2135555	129	AT4G12520 [Arabidopsis thalian	0.405	0.612	0.387	5.8e-12
TAIR|locus:2050901	134	AT2G45180 [Arabidopsis thalian	0.405	0.589	0.407	1.8e-09
TAIR|locus:2135595	161	AZI1 "azelaic acid induced 1"	0.410	0.496	0.333	1.2e-08

TAIR|locus:2041927 AT2G10940 [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
 Identities = 45/82 (54%), Positives = 53/82 (64%)

Query:   114 IDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVXXXXXXXXXXXXXXXXX 173
             IDTLKLGACVDLLGGLV IGLGDP VN+CCP+L+GLVE+EAA                  
Sbjct:   210 IDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLKLKALDLNLYV 269

Query:   174 XXXXXXXVTCGKTPPAGFTCTL 195
                    +TCGK PP G+TC++
Sbjct:   270 PVALQLLLTCGKNPPPGYTCSI 291

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2203876 AT1G62500 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 43/80 (53%), Positives = 50/80 (62%)

Query:   114 IDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVXXXXXXXXXXXXXXXXX 173
             I+ LKLGACVD+LGGL+HIGLG+PV N CCPVLQGL+ELEAAV                 
Sbjct:   214 INALKLGACVDVLGGLIHIGLGNPVENVCCPVLQGLLELEAAVCLCTTIRLKLLNLNIFI 273

Query:   174 XXXXXXXVTCGKTPPAGFTC 193
                    +TCG  PP+GF C
Sbjct:   274 PLALQALITCGINPPSGFVC 293

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:4010713767 AT3G22142 "AT3G22142" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 1.0e-14, P = 1.0e-14
 Identities = 39/80 (48%), Positives = 47/80 (58%)

Query:   114 IDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVXXXXXXXXXXXXXXXXX 173
             IDTLKLG+CVDLLGGLVHIG+G     +CCPV++GLV+L+AAV                 
Sbjct:  1399 IDTLKLGSCVDLLGGLVHIGIGKSAKEKCCPVVEGLVDLDAAVCLCTTIKAKLLNIDVIL 1458

Query:   174 XXXXXXXVTCGKTPPAGFTC 193
                    + CGK PP GF C
Sbjct:  1459 PIALEVLLNCGKNPPPGFKC 1478

GO:0005575 "cellular_component" evidence=ND

GO:0006869 "lipid transport" evidence=IEA

TAIR|locus:2090419 CWLP "cell wall-plasma membrane linker protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 39/81 (48%), Positives = 47/81 (58%)

Query:   114 IDTLKLGACVDLLGGLVHIGLGDPVVN-QCCPVLQGLVELEAAVXXXXXXXXXXXXXXXX 172
             IDTLKLGACVD+LGGL+HIGLG      +CCPVL GL++L+AAV                
Sbjct:   252 IDTLKLGACVDVLGGLIHIGLGKSHAKAECCPVLGGLLDLDAAVCLCTTIKLKLLNIDLV 311

Query:   173 XXXXXXXXVTCGKTPPAGFTC 193
                     + CGKTPP+ F C
Sbjct:   312 LPIALELLLDCGKTPPSDFKC 332

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2008880 ELP "extensin-like protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
 Identities = 29/80 (36%), Positives = 38/80 (47%)

Query:   115 DTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVXXXXXXXXXXXXXXXXXX 174
             DTLKLG C ++L GL+ + LG P V  CC ++QGL ++EAAV                  
Sbjct:    58 DTLKLGVCANVLNGLLDLTLGKPPVEPCCSLIQGLADVEAAVCLCTALKANILGINLNLP 117

Query:   175 XXXXXXVT-CGKTPPAGFTC 193
                   +  C K  P GF C
Sbjct:   118 ISLSLLLNVCSKQLPPGFQC 137

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2203886 AT1G62510 [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
 Identities = 28/80 (35%), Positives = 37/80 (46%)

Query:   115 DTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVXXXXXXXXXXXXXXXXXX 174
             D LKLG C ++L GL+++ LG P V  CC ++QGL +LEAA                   
Sbjct:    70 DALKLGVCANVLNGLLNVTLGKPPVEPCCTLIQGLADLEAAACLCTALKANILGINLNIP 129

Query:   175 XXXXXXVT-CGKTPPAGFTC 193
                   +  C K  P GF C
Sbjct:   130 LSLSLLLNVCSKKVPRGFQC 149

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2135545 AT4G12510 [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
 Identities = 31/80 (38%), Positives = 38/80 (47%)

Query:   115 DTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVXXXXXXXXXXXXXXXXXX 174
             DTLKLG C ++L  L+ I LG P V  CC +L GLV+LEAA                   
Sbjct:    49 DTLKLGVCANVLKDLLKIQLGTPPVKPCCSLLNGLVDLEAAACLCTALKAKVLGINLNVP 108

Query:   175 XXXXXXVT-CGKTPPAGFTC 193
                   +  CGK  P+GF C
Sbjct:   109 VSLSLLLNVCGKKVPSGFVC 128

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2135555 AT4G12520 [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
 Identities = 31/80 (38%), Positives = 38/80 (47%)

Query:   115 DTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVXXXXXXXXXXXXXXXXXX 174
             DTLKLG C ++L  L+ I LG P V  CC +L GLV+LEAA                   
Sbjct:    49 DTLKLGVCANVLKDLLKIQLGTPPVKPCCSLLNGLVDLEAAACLCTALKAKVLGINLNVP 108

Query:   175 XXXXXXVT-CGKTPPAGFTC 193
                   +  CGK  P+GF C
Sbjct:   109 VSLSLLLNVCGKKVPSGFVC 128

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2050901 AT2G45180 [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 33/81 (40%), Positives = 39/81 (48%)

Query:   115 DTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVXXXXXXXXXXXXXXXXXX 174
             DTLKLG C DLLG LV++ +G P    CC +LQGL  LEAAV                  
Sbjct:    55 DTLKLGVCADLLG-LVNVVVGSPPKTPCCTLLQGLANLEAAVCLCTALKANVLGINLNVP 113

Query:   175 XXXXXXVT-CGKTPPAGFTCT 194
                   +  CGK  P GF C+
Sbjct:   114 IDLTLLLNYCGKKVPHGFQCS 134

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

TAIR|locus:2135595 AZI1 "azelaic acid induced 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 27/81 (33%), Positives = 40/81 (49%)

Query:   114 IDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVXXXXXXXXXXXXXXXXX 173
             ID LKLG C ++L  L++I LG P   QCC ++QGLV+++AA+                 
Sbjct:    80 IDALKLGVCANVLSSLLNIQLGQPSSQQCCSLIQGLVDVDAAICLCTALRANVLGINLNV 139

Query:   174 XXXXXXXVT-CGKTPPAGFTC 193
                    +  C +  P+GF C
Sbjct:   140 PISLSVLLNVCNRKLPSGFQC 160

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0009627 "systemic acquired resistance" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016962001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (266 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	195
cd01958	85	cd01958, HPS_like, HPS_like: Hydrophobic Protein f	1e-26
pfam00234	74	pfam00234, Tryp_alpha_amyl, Protease inhibitor/see	6e-09
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	3e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	5e-04
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	0.004
PRK15313	955	PRK15313, PRK15313, autotransport protein MisL; Pr	0.004

>gnl|CDD|238924 cd01958, HPS_like, HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

 Score = 96.6 bits (241), Expect = 1e-26
 Identities = 43/85 (50%), Positives = 59/85 (69%), Gaps = 2/85 (2%)

Query: 110 ATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNL 169
            TCP D LKLG C ++LG  +   LG P V  CCP++ GL +L+AAVCLCT +K  +L +
Sbjct: 2   PTCPRDALKLGVCANVLGLSLL-LLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILGI 60

Query: 170 NIYLPLALQLLV-TCGKTPPAGFTC 193
           +I +P+AL LL+ +CG+  P GFTC
Sbjct: 61  SINIPVALSLLLNSCGRNVPPGFTC 85

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset of cortical cells. Length = 85

>gnl|CDD|215810 pfam00234, Tryp_alpha_amyl, Protease inhibitor/seed storage/LTP family

 Score = 50.3 bits (120), Expect = 6e-09
 Identities = 25/83 (30%), Positives = 30/83 (36%), Gaps = 10/83 (12%)

Query: 112 CPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLN- 170
           C    LKL  C   L G            QCC  L+ L     A C CT ++  +L +  
Sbjct: 1   CGQVLLKLAPCAGYLQGGCQ-----VPSQQCCSQLRQL----QAQCRCTAIRAIVLGIEG 51

Query: 171 IYLPLALQLLVTCGKTPPAGFTC 193
           I    A  L   CG   P G  C
Sbjct: 52  INPQAAASLPSMCGVNVPYGIDC 74

This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants. Length = 74

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 27/88 (30%), Positives = 32/88 (36%), Gaps = 8/88 (9%)

Query: 41  QPRPIGLPPIVK--PPVPLPPVTLPPVTVPPIKPPVDLPTLPPVALP-PVLPNPPSARKP 97
            P P G P + K  P   LP    P     P KP  + P   P  LP P     P  + P
Sbjct: 381 APSPAGSPDVKKKAPEPDLPQ---PDRHPGPAKP--EAPGARPAELPSPASAPTPEQQPP 435

Query: 98  CPCSYTPPPPAAATCPIDTLKLGACVDL 125
              S   PP   A+ P +       VDL
Sbjct: 436 VARSAPLPPSPQASAPRNVASGKPGVDL 463

Length = 620

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 21/84 (25%), Positives = 23/84 (27%), Gaps = 3/84 (3%)

Query: 30  GKPHPKHRKPRQPRPIGL-PPIVKPPVPLPPVTLPPVTVPPIKPPVDLPTLPPVALPPVL 88
            KP      P +P P     P       +PP      T  P   P      P    P   
Sbjct: 369 AKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESA 428

Query: 89  PNPPSARKPCPCS--YTPPPPAAA 110
           P    A  P      YTPP P   
Sbjct: 429 PKLTRAAIPVDEKPKYTPPAPPKE 452

Length = 585

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 5/79 (6%)

Query: 32  PHPKHRKPRQPRPIGLPPIVKPPVPLPPVTLPPVTVPPIKPPVDLPTLPPVALPPVLPNP 91
             P      +PRP     +V P  P PP      T+ P   PV+ P        P +  P
Sbjct: 123 ADPIQALQPRPRPDVEEVLV-PAAPEPPS--YEETIKPGPAPVEEPVDSMAIAVPAIDTP 179

Query: 92  PSARKPCPCSYTPPPPAAA 110
            +     P +  PPPP   
Sbjct: 180 VTL--ELPPAPQPPPPVVP 196

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|237940 PRK15313, PRK15313, autotransport protein MisL; Provisional

 Score = 37.1 bits (85), Expect = 0.004
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 10/62 (16%)

Query: 49  PIVKPPVPLPPVTLPPVTVPPIKP-PVDLPTLPPVALPPVLPNP--PSARKPCPCSYTPP 105
           PI+  P P+ PV   PV   P+ P PVD     PV   PV+P+P  P    P P     P
Sbjct: 563 PII--PDPVDPVIPDPVIPDPVDPDPVD-----PVIPDPVIPDPVDPDPVDPEPVDPVIP 615

Query: 106 PP 107
            P
Sbjct: 616 DP 617

Length = 955

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
cd01958	85	HPS_like HPS_like: Hydrophobic Protein from Soybea	100.0
PF14547	85	Hydrophob_seed: Hydrophobic seed protein	100.0
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	96.64
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	96.64
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	96.28
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	96.09
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	92.48
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	92.06
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	87.45

>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Probab=100.00  E-value=6.8e-36  Score=224.96  Aligned_cols=83  Identities=53%  Similarity=1.149  Sum_probs=80.9

Q ss_pred             CCCCccccccchhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhcccccceecccccccchhhc-cCCcCC
Q 029302          110 ATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVT-CGKTPP  188 (195)
Q Consensus       110 ~tCP~d~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKAnvLGInl~iPv~L~lLLn-CGK~~P  188 (195)
                      ++||||++|||+|+|||| ++++.+|++++++||++|+||+|+|||+|||||||+|+|||++|+|+++++++| |||++|
T Consensus         2 ~~CP~dalkLgvCanvL~-l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~lgi~~~~pv~l~llln~CGk~~P   80 (85)
T cd01958           2 PTCPRDALKLGVCANVLG-LSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILGISINIPVALSLLLNSCGRNVP   80 (85)
T ss_pred             CCCCcchHHhchhHhhhh-ccccccCCCccchHHHHHcCchhhheeeeeeeeeeccccCcccccChhHHHHHHHHcCcCC
Confidence            689999999999999995 889999999999999999999999999999999999999999999999999999 999999


Q ss_pred             CCCcc
Q 029302          189 AGFTC  193 (195)
Q Consensus       189 ~GF~C  193 (195)
                      +||+|
T Consensus        81 ~gf~C   85 (85)
T cd01958          81 PGFTC   85 (85)
T ss_pred             CCCcC
Confidence            99998

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset

>PF14547 Hydrophob_seed: Hydrophobic seed protein

Probab=100.00  E-value=7.8e-35  Score=218.66  Aligned_cols=83  Identities=53%  Similarity=1.151  Sum_probs=81.1

Q ss_pred             CCCccccccchhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhcccccc-eecccccccchhhc-cCCcCC
Q 029302          111 TCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLN-LNIYLPLALQLLVT-CGKTPP  188 (195)
Q Consensus       111 tCP~d~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKAnvLG-Inl~iPv~L~lLLn-CGK~~P  188 (195)
                      +||+|++|||+|+||| |++++.+|++.+++||++|+||+|+|||+|||+|+|+|+|| |++|+|+++++++| |||++|
T Consensus         1 ~CP~d~lkLgvC~~vL-~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p   79 (85)
T PF14547_consen    1 TCPRDALKLGVCANVL-GLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVP   79 (85)
T ss_pred             CCCCcchhhhhhhhhh-hhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCc
Confidence            6999999999999999 69999999999999999999999999999999999999999 89999999999999 999999


Q ss_pred             CCCccc
Q 029302          189 AGFTCT  194 (195)
Q Consensus       189 ~GF~C~  194 (195)
                      +||+|+
T Consensus        80 ~gf~C~   85 (85)
T PF14547_consen   80 SGFTCP   85 (85)
T ss_pred             CCCcCC
Confidence            999996

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=96.64  E-value=0.00027  Score=50.94  Aligned_cols=57  Identities=30%  Similarity=0.606  Sum_probs=33.5

Q ss_pred             CCCCCCCcchhhhccccccccchhhhhhcccc-cceecccccccchhhccCCcCCCCCcc
Q 029302          135 GDPVVNQCCPVLQGLVELEAAVCLCTTLKLKL-LNLNIYLPLALQLLVTCGKTPPAGFTC  193 (195)
Q Consensus       135 G~p~~~~CCsLI~GL~dldAAvCLCtAIKAnv-LGInl~iPv~L~lLLnCGK~~P~GF~C  193 (195)
                      +..+.+.||.-++.+.+ ....|||..++... .++++|...++++--.||...+. ++|
T Consensus        39 ~~~Ps~~CC~~l~~~~~-~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg~~~~~-~~C   96 (96)
T PF14368_consen   39 GPAPSAACCSALKSVVQ-ADPPCLCQLLNSPGAPGFGINVTRALALPAACGVPVPP-SKC   96 (96)
T ss_dssp             -----HHHHHHHCC-----HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCTSS-S-----
T ss_pred             CCCCCHHHHHHHHHhcc-CCCCCHHHhcCccccccCCcCHHHHHHHHHHcCCCCCC-CCC
Confidence            34566789999999977 44899999999876 55666666666555449999998 887

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=96.64  E-value=0.00083  Score=45.39  Aligned_cols=74  Identities=34%  Similarity=0.654  Sum_probs=47.7

Q ss_pred             CCccccccchhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhcccccceec----ccccccchhhc-cCCc
Q 029302          112 CPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNI----YLPLALQLLVT-CGKT  186 (195)
Q Consensus       112 CP~d~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKAnvLGInl----~iPv~L~lLLn-CGK~  186 (195)
                      |.....++..|.+.+.+-   .....+.++||..++++.   .+.|+|.+++..+.++..    +... ...|-+ ||..
T Consensus         1 C~~~~~~~~~c~~~~~~~---~~~~~p~~~CC~~l~~~~---~~~C~C~~~~~~~~~~~~~~~~~~~~-a~~lp~~C~~~   73 (79)
T smart00499        1 CGQVLLQLAPCLSYLTGG---SPGAPPSQQCCSQLRGLN---SAQCRCLALRAAVLGILEIPGVNAQN-AASLPSACGVP   73 (79)
T ss_pred             ChhhhhhHHhhHHHHcCC---CCCCCCchHHHHHHHHhc---ccCCcchhhhcccccccchhhhhHHH-HHhhHHhcCCC
Confidence            344445666788776311   012345688999999987   778999999987766532    3333 333445 9998


Q ss_pred             CCCCCcc
Q 029302          187 PPAGFTC  193 (195)
Q Consensus       187 ~P~GF~C  193 (195)
                      .+. +.|
T Consensus        74 ~~~-~~C   79 (79)
T smart00499       74 PPY-TDC   79 (79)
T ss_pred             CCC-CCC
Confidence            775 544

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=96.28  E-value=0.0012  Score=47.58  Aligned_cols=63  Identities=29%  Similarity=0.546  Sum_probs=46.6

Q ss_pred             ccccchhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhcccccceecccccccchhhccCCcCCC
Q 029302          116 TLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVTCGKTPPA  189 (195)
Q Consensus       116 ~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKAnvLGInl~iPv~L~lLLnCGK~~P~  189 (195)
                      ..+|..|...+.      .|.++.++||.-|+.     +.-|||.-+|...|+.-+|.+.+.++.-.||..+|.
T Consensus         3 ~~~L~~C~~ai~------~~~~Ps~~CC~~Lk~-----~~~CLC~y~~~p~l~~~i~~~~A~~l~~~Cgv~~P~   65 (66)
T cd01959           3 PTQLSPCLPAIL------GGSPPSAACCAKLKE-----QQSCLCQYAKNPSLKQYVNSPNARKVLAACGVPYPN   65 (66)
T ss_pred             hhhcccCHHHHh------CCCCCCHHHHHHHhc-----CCCCeeeeecCccHHhhcCcHHHHHHHHHcCCCCCC
Confidence            357888998763      356778899999997     237999999876665446666667665559998863

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=96.09  E-value=0.0021  Score=45.94  Aligned_cols=70  Identities=27%  Similarity=0.502  Sum_probs=45.4

Q ss_pred             cccccchhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhcccccceecccccccchhhccCCcCCCCCcc
Q 029302          115 DTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVTCGKTPPAGFTC  193 (195)
Q Consensus       115 d~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKAnvLGInl~iPv~L~lLLnCGK~~P~GF~C  193 (195)
                      |..+|..|...+.+   ..-...+.+.||+-|+.+   |. .|+|..++++.+.+ +|...+.+|--.||..+|. |+|
T Consensus         4 ~~~~L~~C~~yl~~---~~~~~~Ps~~CC~~vk~~---~~-~C~C~~~~~~~~~~-i~~~~a~~Lp~~Cgv~~p~-~~C   73 (73)
T cd04660           4 DLDLLAECQPYVTG---PNPPPPPSRECCAALRRA---DL-PCLCRYKTSLVLQI-IDPDKAVYLPAKCGLPLPP-SSC   73 (73)
T ss_pred             CHHHHHHHHHHHcC---CCCCCCCCHHHHHHHHcC---Cc-CCEeeccCCCcccc-cCHHHHHHHHHHcCCCCCC-CCC
Confidence            33467788887631   000123456799999984   32 39999999876542 5555444433349999999 887

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=92.48  E-value=0.0085  Score=43.11  Aligned_cols=66  Identities=29%  Similarity=0.615  Sum_probs=44.9

Q ss_pred             cccchhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhcccccce-----------ecccccccchhhc-cC
Q 029302          117 LKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNL-----------NIYLPLALQLLVT-CG  184 (195)
Q Consensus       117 LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKAnvLGI-----------nl~iPv~L~lLLn-CG  184 (195)
                      ..|..|...+.+-    - ..+.++||.-|+.|    ...|.|.+||..+.++           .++.-.+ +.|-+ ||
T Consensus        13 ~~l~~c~~~~~~~----~-~~~~~~CC~~L~~l----~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a-~~LP~~C~   82 (90)
T PF00234_consen   13 VRLSPCLPYLQGG----C-QQPSQQCCQQLRQL----DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRA-QNLPSMCN   82 (90)
T ss_dssp             SHHHGGHHHHTTS----S-SHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHH-HHHHHHTT
T ss_pred             ccccccHHHHhcc----c-ccchHHHhHHHHHH----hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHH-HHHHHHCC
Confidence            4577788776421    1 12356799999998    8899999999888763           3443333 34445 99


Q ss_pred             CcCCCCCcc
Q 029302          185 KTPPAGFTC  193 (195)
Q Consensus       185 K~~P~GF~C  193 (195)
                      ..++. |.|
T Consensus        83 v~~~~-~~C   90 (90)
T PF00234_consen   83 VSPPY-TDC   90 (90)
T ss_dssp             SSSSS-S-G
T ss_pred             CCCCC-CCC
Confidence            99887 665

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=92.06  E-value=0.065  Score=36.37  Aligned_cols=42  Identities=26%  Similarity=0.578  Sum_probs=29.4

Q ss_pred             chhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhccccc
Q 029302          120 GACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLL  167 (195)
Q Consensus       120 gvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKAnvL  167 (195)
                      ..|.+.+.|     -+..+.++||.-++.+.+.| ..|||..+|....
T Consensus         2 ~~C~~y~~~-----~~~~Ps~~CC~~l~~~~~~~-~~ClC~~~~~~~~   43 (63)
T cd00010           2 APCLSYLTG-----GATAPPSDCCSGLKSVVKSD-PKCLCAALNGPGA   43 (63)
T ss_pred             cchHHHHcC-----CCCCCChHHHHHHHHHHhcC-hhhHHHHHcCccc
Confidence            347766631     11345678999999997663 5699999997654

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=87.45  E-value=0.19  Score=36.72  Aligned_cols=68  Identities=26%  Similarity=0.415  Sum_probs=42.5

Q ss_pred             ccccchhhhhhhcccccccCCCCCCCcchhhhccccc----cccchhhhhhccccccee-cccccccchhhccCCcCC
Q 029302          116 TLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVEL----EAAVCLCTTLKLKLLNLN-IYLPLALQLLVTCGKTPP  188 (195)
Q Consensus       116 ~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dl----dAAvCLCtAIKAnvLGIn-l~iPv~L~lLLnCGK~~P  188 (195)
                      ..+|.-|.+.+.|-     +..+..+||.-++.|.+.    +...|+|.-+|....++. +|...+++|=-.||-..+
T Consensus         7 ~~~l~~C~~y~~g~-----~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~   79 (89)
T cd01960           7 TSLLAPCLGYLTGG-----GPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIP   79 (89)
T ss_pred             HhhHHhHHHHHhCC-----CCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCC
Confidence            34677888877521     234567899999998654    223466666776665554 555444544444988754

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	195
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	6e-16
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	1e-04
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	1e-04
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	1e-04
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	1e-04

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1 Length = 80

 Score = 68.7 bits (168), Expect = 6e-16
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 14/85 (16%)

Query: 110 ATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLK-LKLLN 168
            +CP     L  C+++LGG +        V+ CC ++ GL ++EA VCLC  L+ L +LN
Sbjct: 6   PSCP----DLSICLNILGGSL------GTVDDCCALIGGLGDIEAIVCLCIQLRALGILN 55

Query: 169 LNIYLPLALQLLVTCGKTPPAGFTC 193
           LN  L L   +L +CG++ P+  TC
Sbjct: 56  LNRNLQL---ILNSCGRSYPSNATC 77

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 13/45 (28%), Positives = 14/45 (31%)

Query: 48  PPIVKPPVPLPPVTLPPVTVPPIKPPVDLPTLPPVALPPVLPNPP 92
            P V    P PPV     T P  +    L   P        P PP
Sbjct: 443 VPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPP 487

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 14/56 (25%), Positives = 16/56 (28%), Gaps = 1/56 (1%)

Query: 34  PKHRKPRQPRPIGLPPIVKPPVPLPPVTLPPVTVPPIKPPVDLPTLPPVALPPVLP 89
            K R    P+     P   P  P  P      T  P+KP    P       PP   
Sbjct: 436 GKIRAVNVPKVTKEKPT-PPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRL 490

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 18/70 (25%), Positives = 22/70 (31%), Gaps = 4/70 (5%)

Query: 30  GKPHPKHRKPRQPRPIGLPPIVK--PPVPLPPVTLPPVTVPPIKPPVDLPTLPPVALPPV 87
           GK +   +KP     +         P V     T P     P KP     T  P+   PV
Sbjct: 419 GKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTY--ETEKPLKPAPV 476

Query: 88  LPNPPSARKP 97
            PN      P
Sbjct: 477 APNYEKEPTP 486

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 17/92 (18%), Positives = 23/92 (25%), Gaps = 6/92 (6%)

Query: 28  TCGKPHPKHRKPRQPRPIGL-PPIVKPPVPLPPVTLPPVTVPPIKP--PVDLPTLPPVAL 84
           T G     +  P    P+           P    +L         P    + PT P    
Sbjct: 399 TVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPT 458

Query: 85  PPVLPNPPS--ARKPCPCSYTPPP-PAAATCP 113
            P  P   +    KP P +      P   T  
Sbjct: 459 APTKPTYETEKPLKPAPVAPNYEKEPTPPTRL 490

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	195
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	99.95
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	96.44
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	96.33
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	94.59
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	92.96
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	92.75
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	91.91
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	85.28

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1

Probab=99.95  E-value=6.3e-30  Score=190.10  Aligned_cols=74  Identities=41%  Similarity=0.971  Sum_probs=66.2

Q ss_pred             CCCCCccccccchhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhcccccceecccccccchhhc-cCCcC
Q 029302          109 AATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVT-CGKTP  187 (195)
Q Consensus       109 ~~tCP~d~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKAnvLGInl~iPv~L~lLLn-CGK~~  187 (195)
                      .++||    |||+|+|||||++    |  ++++||++|+||+|+|||+|||||||  +||| +|+|++|++|+| |||++
T Consensus         5 ~~~CP----kLgvCanvL~g~~----~--~~~~CC~Ll~GL~dleAAvCLCtaik--~Lgi-lnlpv~L~llln~Cgk~~   71 (80)
T 1hyp_A            5 RPSCP----DLSICLNILGGSL----G--TVDDCCALIGGLGDIEAIVCLCIQLR--ALGI-LNLNRNLQLILNSCGRSY   71 (80)
T ss_dssp             -CCSC----CCGGGGGGGGTCC----T--THHHHHHHHHTSCHHHHHHHHHHHHH--HHTC-SCHHHHHHHHHHHTTCSS
T ss_pred             CCCCC----chhHHHHHhCcCC----C--CCCccchhhhCcchhhhhhhhhhhcc--ccce-eecChhHHHHHHHhCCcC
Confidence            46799    8999999997543    3  46789999999999999999999999  5899 999999999999 99999


Q ss_pred             CCCCcccC
Q 029302          188 PAGFTCTL  195 (195)
Q Consensus       188 P~GF~C~~  195 (195)
                      |+||+|+.
T Consensus        72 P~gF~C~~   79 (80)
T 1hyp_A           72 PSNATCPR   79 (80)
T ss_dssp             CCCCCCSC
T ss_pred             cCCCCCCC
Confidence            99999973

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=96.44  E-value=0.00071  Score=47.38  Aligned_cols=61  Identities=23%  Similarity=0.443  Sum_probs=44.5

Q ss_pred             cccchhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhcccccceecccccccchhhccCCcCC
Q 029302          117 LKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVTCGKTPP  188 (195)
Q Consensus       117 LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKAnvLGInl~iPv~L~lLLnCGK~~P  188 (195)
                      .+|..|.+.+.      -|.++..+||+-|++     +..|||..+|...++..||...+.+|.-.||..+|
T Consensus         6 ~~L~pC~~~v~------~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~~~in~~~A~~Lp~~Cgv~~P   66 (69)
T 1l6h_A            6 GQLTVCTGAIA------GGARPTAACCSSLRA-----QQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             TTHHHHHHHHT------TCCSTTHHHHHHHHH-----HHHHHHHHTTCSSHHHHTTTTTGGGCCCCCSSCSC
T ss_pred             hhcccCHHHHc------CCCCCCHHHHHhhCC-----CCCCCCccccCcccccccCHHHHHHHHHHcCCCCC
Confidence            36788988773      244566789999985     37899999996555545666666665555999887

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=96.33  E-value=0.00065  Score=47.33  Aligned_cols=61  Identities=26%  Similarity=0.481  Sum_probs=44.3

Q ss_pred             cccchhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhcccccceecccccccchhhccCCcCC
Q 029302          117 LKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVTCGKTPP  188 (195)
Q Consensus       117 LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKAnvLGInl~iPv~L~lLLnCGK~~P  188 (195)
                      .+|..|...+.      -|.++..+||+-|++     +..|||..+|.-.++..||...+.+|.-.||..+|
T Consensus         5 ~~L~pC~~~v~------~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~~~in~~~A~~Lp~~Cgv~~P   65 (67)
T 1n89_A            5 SQLAVCASAIL------SGAKPSGECCGNLRA-----QQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             STTHHHHHHHT------TCCCCCHHHHHHHHH-----HSSHHHHGGGCSTTHHHHTCHHHHHHHHHHTSCCS
T ss_pred             hhcccCHHHHc------CCCCCCHHHHHhhCC-----CCCCCCccccCcccccccCHHHHHHHHHHcCCCCC
Confidence            36788988773      244566789999985     37899999997655544666666665555999887

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=94.59  E-value=0.0063  Score=42.89  Aligned_cols=69  Identities=22%  Similarity=0.387  Sum_probs=45.7

Q ss_pred             CCCCccccccchhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhcc---cccceecccccccchhhccCCc
Q 029302          110 ATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKL---KLLNLNIYLPLALQLLVTCGKT  186 (195)
Q Consensus       110 ~tCP~d~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKA---nvLGInl~iPv~L~lLLnCGK~  186 (195)
                      ..|-.+..+|..|.+.+.+    .-+..+...||+-|++ +|   ..|||..++.   +-+||  |...+++|--.||..
T Consensus         3 ~~C~~~~~~L~pC~~yv~~----~~~~~Ps~~CC~~lk~-~~---~~ClC~~~~~~~~~~~gi--n~~~A~~LP~~Cgv~   72 (77)
T 2rkn_A            3 DLCGMSQDELNECKPAVSK----ENPTSPSQPCCTALQH-AD---FACLCGYKNSPWLGSFGV--DPELASALPKQCGLA   72 (77)
T ss_dssp             CBTTBCHHHHHHHGGGGBS----SSCCCCCHHHHHHHTT-CC---HHHHHTTTTCHHHHHHTB--CHHHHHHHHHHTTCS
T ss_pred             chHHhHHHhHhhCHHHHcC----CCCCCCCHHHHHHHHh-cC---cCCcCcccCCcchhhcCc--CHHHHHHHHHHcCCC
Confidence            4677777788889887631    1113456679999998 33   3899999883   33354  444455544459998


Q ss_pred             CC
Q 029302          187 PP  188 (195)
Q Consensus       187 ~P  188 (195)
                      +|
T Consensus        73 ~p   74 (77)
T 2rkn_A           73 NA   74 (77)
T ss_dssp             CC
T ss_pred             CC
Confidence            76

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=92.96  E-value=0.01  Score=43.35  Aligned_cols=70  Identities=26%  Similarity=0.469  Sum_probs=43.6

Q ss_pred             CCccccccchhhhhhhcccccccCCCCCCCcchhhhccccc-----c-ccchhhhhhcccccceecccccccchhhccCC
Q 029302          112 CPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVEL-----E-AAVCLCTTLKLKLLNLNIYLPLALQLLVTCGK  185 (195)
Q Consensus       112 CP~d~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dl-----d-AAvCLCtAIKAnvLGInl~iPv~L~lLLnCGK  185 (195)
                      |-....+|.-|.+.+.|      |.++...||.-|++|.+.     | -+.|||..--++-++ .+|...+++|--.||.
T Consensus         3 C~~v~~~L~pCl~yv~~------~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~-~in~~~A~~LP~~Cgv   75 (91)
T 1siy_A            3 CGQVQGNLAQCIGFLQK------GGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR-GINPNNAEALPGKCGV   75 (91)
T ss_dssp             TTTTHHHHHHHHHHHTS------CSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCS-SCCHHHHHHHHHHHTC
T ss_pred             HHHHHHhccCcHHHHhC------CCCCcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccC-CcCHHHHHHHHHHcCC
Confidence            55555678889887742      223566799999998643     3 268999722223332 4555555654444999


Q ss_pred             cCC
Q 029302          186 TPP  188 (195)
Q Consensus       186 ~~P  188 (195)
                      .+|
T Consensus        76 ~~p   78 (91)
T 1siy_A           76 NIP   78 (91)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            865

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=92.75  E-value=0.0043  Score=45.40  Aligned_cols=66  Identities=24%  Similarity=0.485  Sum_probs=42.8

Q ss_pred             ccccchhhhhhhcccccccCCCCCCCcchhhhccccc-----c-ccchhhhhhcccccceecccccccchhhccCCcCC
Q 029302          116 TLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVEL-----E-AAVCLCTTLKLKLLNLNIYLPLALQLLVTCGKTPP  188 (195)
Q Consensus       116 ~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dl-----d-AAvCLCtAIKAnvLGInl~iPv~L~lLLnCGK~~P  188 (195)
                      ..+|.-|.+.+.|      |.++..+||.-|++|.+.     | -+.|||...++.-++ .+|...+++|--.||-.+|
T Consensus         8 ~~~L~pCl~y~~~------~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~-~in~~~A~~LP~~Cgv~~p   79 (92)
T 2alg_A            8 SSSLAPCIPYVRG------GGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVP-GVNPNNAAALPGKCGVSIP   79 (92)
T ss_dssp             HHHHGGGHHHHHH------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHST-TCCHHHHHHHHHHTTCCCS
T ss_pred             HHhccCcHHHHcC------CCCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccC-ccChHHHHHHHHHcCCCCC
Confidence            4467888887742      223445799999998632     2 268999976665553 4455555654444999876

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=91.91  E-value=0.0064  Score=44.37  Aligned_cols=66  Identities=21%  Similarity=0.411  Sum_probs=40.1

Q ss_pred             ccccchhhhhhhcccccccCCCCCCCcchhhhcccccc------ccchhhhhhcccccceecccccccchhhccCCcCC
Q 029302          116 TLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELE------AAVCLCTTLKLKLLNLNIYLPLALQLLVTCGKTPP  188 (195)
Q Consensus       116 ~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dld------AAvCLCtAIKAnvLGInl~iPv~L~lLLnCGK~~P  188 (195)
                      ..+|.-|.+.+.|      |..+..+||.-+++|.+.-      .+.|||-.-.++-++ .+|...+++|--.||-.+|
T Consensus         7 ~~~L~pCl~y~~~------~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~-~in~~~A~~LP~~C~v~~p   78 (90)
T 1bwo_A            7 DSLVRPCLSYVQG------GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH-NLNEDNARSIPPKCGVNLP   78 (90)
T ss_dssp             HHHHGGGHHHHTT------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCT-TCCHHHHHTHHHHHTCCCS
T ss_pred             HHhhcccHHHHcC------CCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccC-CcCHHHHHHHHHHcCCCCC
Confidence            3467778887742      2235667999999986421      268999422233332 3455555655555998865

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=85.28  E-value=0.051  Score=39.66  Aligned_cols=71  Identities=20%  Similarity=0.401  Sum_probs=41.9

Q ss_pred             CCccccccchhhhhhhcccccccCCCCCCCcchhhhccccc---c---ccchhhhhhcccccceecccccccchhhccCC
Q 029302          112 CPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVEL---E---AAVCLCTTLKLKLLNLNIYLPLALQLLVTCGK  185 (195)
Q Consensus       112 CP~d~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dl---d---AAvCLCtAIKAnvLGInl~iPv~L~lLLnCGK  185 (195)
                      |-....+|.-|.+.+.|     -+..+..+||.-|++|.+.   .   -+.|||....+.-++ .+|...+++|=-.||-
T Consensus         4 C~~v~~~L~pCl~y~~~-----~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~-~in~~~A~~LP~~C~v   77 (93)
T 1afh_A            4 CGQVASAIAPCISYARG-----QGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVS-GLNAGNAASIPSKCGV   77 (93)
T ss_dssp             SHHHHHHHGGGHHHHTT-----SCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHC
T ss_pred             hHHHHHhccCcHHHHcC-----CCCCChHHHHHHHHHHHHhhcCCCCCcccCEeecccccccc-CcCHHHHHHHHHHcCC
Confidence            43344577888887742     1223455799999998532   1   268999755444442 3444445544334988


Q ss_pred             cCC
Q 029302          186 TPP  188 (195)
Q Consensus       186 ~~P  188 (195)
                      .+|
T Consensus        78 ~~p   80 (93)
T 1afh_A           78 SIP   80 (93)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	195
d1hypa_	75	a.52.1.1 (A:) Soybean hydrophobic protein {Soybean	6e-19

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]} Length = 75

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

 Score = 74.8 bits (184), Expect = 6e-19
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 14/84 (16%)

Query: 111 TCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLN 170
           +CP     L  C+++LGG +        V+ CC ++ GL ++EA VCLC  L+   +   
Sbjct: 2   SCP----DLSICLNILGGSL------GTVDDCCALIGGLGDIEAIVCLCIQLRALGI--- 48

Query: 171 IYLPLALQLLV-TCGKTPPAGFTC 193
           + L   LQL++ +CG++ P+  TC
Sbjct: 49  LNLNRNLQLILNSCGRSYPSNATC 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	195
d1hypa_	75	Soybean hydrophobic protein {Soybean (Glycine max)	99.95
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	89.29
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	88.82
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	88.58
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	87.14

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

Probab=99.95  E-value=1.3e-30  Score=190.05  Aligned_cols=73  Identities=38%  Similarity=0.900  Sum_probs=65.2

Q ss_pred             CCCCccccccchhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhcccccceecccccccchhhc-cCCcCC
Q 029302          110 ATCPIDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVT-CGKTPP  188 (195)
Q Consensus       110 ~tCP~d~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKAnvLGInl~iPv~L~lLLn-CGK~~P  188 (195)
                      .+||    |||+|+|||||++      +..++||++|+||+|+|||+||||||||+.  + +|+|+++++|+| |||++|
T Consensus         1 PtCP----Klg~C~nvLg~~~------~~~~~CC~Ll~GL~dleAAvCLCtaika~~--l-lnvpv~l~llln~Cgk~~P   67 (75)
T d1hypa_           1 PSCP----DLSICLNILGGSL------GTVDDCCALIGGLGDIEAIVCLCIQLRALG--I-LNLNRNLQLILNSCGRSYP   67 (75)
T ss_dssp             CCSC----CCGGGGGGGGTCC------TTHHHHHHHHHTSCHHHHHHHHHHHHHHHT--C-SCHHHHHHHHHHHTTCSSC
T ss_pred             CCCC----chhhHHHHhcCcc------CCCCCcchHHhhHHHHHHHHHHHHHHHHhh--h-ccccchHHHHHHHcCCcCc
Confidence            3799    8999999998664      345789999999999999999999999954  4 788999999999 999999


Q ss_pred             CCCcccC
Q 029302          189 AGFTCTL  195 (195)
Q Consensus       189 ~GF~C~~  195 (195)
                      +||+|++
T Consensus        68 ~gF~CP~   74 (75)
T d1hypa_          68 SNATCPR   74 (75)
T ss_dssp             CCCCCSC
T ss_pred             CCCcCCC
Confidence            9999975

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=89.29  E-value=0.047  Score=37.50  Aligned_cols=64  Identities=25%  Similarity=0.462  Sum_probs=46.3

Q ss_pred             cccccchhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhcccccceecccccccchhhccCCcCCC
Q 029302          115 DTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVTCGKTPPA  189 (195)
Q Consensus       115 d~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKAnvLGInl~iPv~L~lLLnCGK~~P~  189 (195)
                      |..+|..|+..+.      -|.++...||+-|..     ---|||.-+|.-.++=-|+-|-+-+++-.||..+|.
T Consensus         3 ~p~~L~~C~~Ai~------~g~~PS~~CC~kLke-----Q~~ClC~Y~kdP~~~~yv~spnarkv~~aCgvp~P~   66 (67)
T d1tuka1           3 QASQLAVCASAIL------SGAKPSGECCGNLRA-----QQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVPH   66 (67)
T ss_dssp             CGGGGGGGHHHHH------HCCCCCHHHHHHHHH-----HGGGHHHHTTCTTTHHHHTSHHHHHHHHHTTCCCCC
T ss_pred             ChhhccccHHHHh------cCCCCcHHHHHHHHh-----cCCccceecCCccHHHHcCCHHHHHHHHhcCCCCCC
Confidence            4568999998763      567788899998874     457999999987665445545444444449998874

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=88.82  E-value=0.011  Score=41.70  Aligned_cols=74  Identities=19%  Similarity=0.404  Sum_probs=45.9

Q ss_pred             ccccchhhhhhhcccccccCCCCCCCcchhhhccccc----cccchhhhhhcccccce-ecccccccchhhccCCcCC--
Q 029302          116 TLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVEL----EAAVCLCTTLKLKLLNL-NIYLPLALQLLVTCGKTPP--  188 (195)
Q Consensus       116 ~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dl----dAAvCLCtAIKAnvLGI-nl~iPv~L~lLLnCGK~~P--  188 (195)
                      ..+|.-|.+.|.|     -+..+...||.-+++|.++    +...|+|..||...-+. .+|...+.+|=-.||-+++  
T Consensus         8 ~~~l~pCl~Yltg-----~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~l~~p   82 (93)
T d1fk5a_           8 ASAIAPCISYARG-----QGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYT   82 (93)
T ss_dssp             HHHHGGGHHHHTT-----CSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCCSSC
T ss_pred             HHHhhhhHHHHhC-----CCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCCCCCCC
Confidence            4567778877742     2333466899999999774    23568888888654322 2343333333333998877  


Q ss_pred             --CCCccc
Q 029302          189 --AGFTCT  194 (195)
Q Consensus       189 --~GF~C~  194 (195)
                        ..|.|.
T Consensus        83 is~~~dCs   90 (93)
T d1fk5a_          83 ISTSTDCS   90 (93)
T ss_dssp             CSTTCCGG
T ss_pred             CCCCCCCC
Confidence              567774

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=88.58  E-value=0.059  Score=37.17  Aligned_cols=63  Identities=24%  Similarity=0.461  Sum_probs=45.6

Q ss_pred             cccccchhhhhhhcccccccCCCCCCCcchhhhccccccccchhhhhhcccccceecccccccchhhc-cCCcCCC
Q 029302          115 DTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVCLCTTLKLKLLNLNIYLPLALQLLVT-CGKTPPA  189 (195)
Q Consensus       115 d~LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dldAAvCLCtAIKAnvLGInl~iPv~L~lLLn-CGK~~P~  189 (195)
                      |..+|..|+..+.      -|.++...||+-|..     -.-|||.-+|.-.++=.|+=|-+ +-+++ ||..+|.
T Consensus         4 ~p~~L~~C~~ai~------~g~~PS~~CC~kLke-----Q~~ClC~Y~k~P~~~~yv~spna-rkv~~aCgvp~P~   67 (69)
T d1l6ha_           4 NAGQLTVCTGAIA------GGARPTAACCSSLRA-----QQGCFCQFAKDPRYGRYVNSPNA-RKAVSSCGIALPT   67 (69)
T ss_dssp             TTTTHHHHHHHHT------TCCSTTHHHHHHHHH-----HHHHHHHHTTCSSHHHHTTTTTG-GGCCCCCSSCSCC
T ss_pred             ChhhccccHHHHh------CCCCCcHHHHHHHHh-----cCCccceeccCccHHHHcCCHHH-HHHHHhcCCCCCC
Confidence            3457999998763      567778899998875     35799999998766544555544 44555 9998874

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=87.14  E-value=0.016  Score=40.74  Aligned_cols=72  Identities=22%  Similarity=0.456  Sum_probs=46.3

Q ss_pred             cccchhhhhhhcccccccCCCCCCCcchhhhccccc----cccchhhhhhcccccce-ecccccccchhhccCCcCC---
Q 029302          117 LKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVEL----EAAVCLCTTLKLKLLNL-NIYLPLALQLLVTCGKTPP---  188 (195)
Q Consensus       117 LkLgvCanVLggLv~~~lG~p~~~~CCsLI~GL~dl----dAAvCLCtAIKAnvLGI-nl~iPv~L~lLLnCGK~~P---  188 (195)
                      .+|.-|.+.|.|      |..+..+||.-+++|.+.    +...|+|..+|....++ .+|...+.+|=-.||-++|   
T Consensus         8 ~~l~pCl~Yl~g------~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~~p~pi   81 (91)
T d1mida_           8 SKMKPCLTYVQG------GPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTI   81 (91)
T ss_dssp             HHHGGGHHHHTT------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCCCSCC
T ss_pred             HHHHhhHHHHcC------CCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCCCCCCCC
Confidence            456677777642      224567899999999764    23569999998654222 3444444443334999988   


Q ss_pred             -CCCccc
Q 029302          189 -AGFTCT  194 (195)
Q Consensus       189 -~GF~C~  194 (195)
                       ..+.|.
T Consensus        82 s~~~dC~   88 (91)
T d1mida_          82 SPDIDCS   88 (91)
T ss_dssp             CTTCCGG
T ss_pred             CCCCCCC
Confidence             677774