Query 029303
Match_columns 195
No_of_seqs 223 out of 848
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 17:32:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j03_A Putative steroid bindin 100.0 2.3E-38 7.8E-43 241.7 10.2 100 74-173 3-102 (102)
2 3ner_A Cytochrome B5 type B; h 99.5 1.1E-14 3.9E-19 108.5 6.1 55 73-131 9-65 (92)
3 1hko_A Cytochrome B5; electron 99.5 4E-14 1.4E-18 107.9 6.2 55 73-131 8-64 (104)
4 1x3x_A Cytochrome B5; hemoprot 99.5 3.2E-14 1.1E-18 103.5 4.4 54 74-131 4-60 (82)
5 1cyo_A Cytochrome B5; electron 99.5 2.3E-14 7.9E-19 106.8 3.7 55 73-131 4-60 (93)
6 1cxy_A Cytochrome B5; helix, b 99.4 6.5E-14 2.2E-18 103.6 5.4 55 74-132 8-64 (90)
7 3lf5_A Cytochrome B5 reductase 99.4 3.1E-14 1.1E-18 105.4 3.0 56 73-132 5-62 (88)
8 2ibj_A Cytochrome B5, CYTB5; F 99.4 4.6E-14 1.6E-18 103.7 3.8 55 73-131 6-62 (88)
9 2keo_A Probable E3 ubiquitin-p 99.3 1.7E-13 5.8E-18 106.0 1.9 55 73-131 23-79 (112)
10 1mj4_A Sulfite oxidase; cytoch 99.2 2.8E-12 9.7E-17 93.3 2.0 54 74-131 5-60 (82)
11 1kbi_A Cytochrome B2, L-LCR; f 98.9 3.3E-10 1.1E-14 105.8 4.0 56 73-132 8-65 (511)
12 1sox_A Sulfite oxidase; oxidor 98.5 3.6E-08 1.2E-12 91.5 4.0 55 73-131 4-60 (466)
13 1jdm_A Sarcolipin; helix, memb 32.4 38 0.0013 20.3 2.7 19 13-31 10-28 (31)
14 1fjk_A Cardiac phospholamban; 25.3 60 0.0021 21.4 2.9 17 14-30 34-50 (52)
15 1hji_B NUN-protein; bacterioph 25.2 76 0.0026 18.1 3.0 19 144-162 2-20 (26)
16 2yim_A Probable alpha-methylac 22.6 69 0.0024 28.2 3.8 40 74-128 92-131 (360)
17 2g04_A Probable fatty-acid-COA 22.5 70 0.0024 28.1 3.8 42 72-128 92-133 (359)
18 2wzp_P Lactococcal phage P2 OR 21.1 32 0.0011 29.6 1.2 16 99-114 44-60 (326)
19 2kl0_A Putative thiamin biosyn 20.7 88 0.003 21.2 3.3 33 74-107 13-45 (73)
20 1f0z_A THis protein; ubiquitin 20.1 1E+02 0.0036 19.9 3.4 29 76-105 16-44 (66)
No 1
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=100.00 E-value=2.3e-38 Score=241.75 Aligned_cols=100 Identities=48% Similarity=0.905 Sum_probs=96.0
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcccccccCChhHHHhhcCCCCCCCCCCCCCCCHHHHHH
Q 029303 74 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEV 153 (195)
Q Consensus 74 ~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG~Y~~fAGrDaSrala~~sfd~~~l~~dls~L~~~el~~ 153 (195)
+.||.+||++|||.+++++|||||+|+|||||+++.||||||+|..|||||||++|++++++++++++|+++|++.|+++
T Consensus 3 ~~~T~~El~~~ng~~~~~~~~vaI~G~VYDVT~~~~~~hPGG~~~~~AG~DaT~~f~~~~~~~~~l~~dl~~L~~~e~~~ 82 (102)
T 1j03_A 3 MEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKNEEDVSPSLEGLTEKEINT 82 (102)
T ss_dssp CCCCHHHHTTCBSCSSSCCBEEEETTEEEECGGGHHHHSSSSTTTTTTTSBCHHHHHHTCCCSSSCCSSCSSCCHHHHHH
T ss_pred cccCHHHHHHhcCCCCCCCEEEEECCEEEECCCCccccCCCCcccccccchHHHHHHHcCCChhhccCcccCCCHHHHHH
Confidence 56999999999999866799999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCceeEEEec
Q 029303 154 LQDWEYKFMEKYVKVGQIVS 173 (195)
Q Consensus 154 L~~W~~~F~~KYp~VG~L~~ 173 (195)
|++|+++|++||++||+|+.
T Consensus 83 l~~W~~~f~~kY~~VG~l~~ 102 (102)
T 1j03_A 83 LNDWETKFEAKYPVVGRVVS 102 (102)
T ss_dssp HHHHHHHHHTTSCEEECCCC
T ss_pred HHHHHHHHhccCCeeeEEeC
Confidence 99999999999999999973
No 2
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=99.52 E-value=1.1e-14 Score=108.53 Aligned_cols=55 Identities=29% Similarity=0.346 Sum_probs=48.7
Q ss_pred cCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcc--cccccCChhHHHhh
Q 029303 73 LGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPY--AMFAGRDASRALAL 131 (195)
Q Consensus 73 ~~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG~Y--~~fAGrDaSrala~ 131 (195)
.+.||.+||++||+.+ +|||+|+|+|||||... -+||||.. ..+||+|||++|..
T Consensus 9 ~~~~t~~Ev~~h~~~~---~~wv~i~g~VYDvT~f~-~~HPGG~~~l~~~aG~DaT~~F~~ 65 (92)
T 3ner_A 9 VTYYRLEEVAKRNSLK---ELWLVIHGRVYDVTRFL-NEHPGGEEVLLEQAGVDASESFED 65 (92)
T ss_dssp SCEECHHHHTTCEETT---EEEEEETTEEEECGGGT-TTCTTCSHHHHTTTTSBCHHHHHH
T ss_pred CCeeCHHHHHhhCCCC---CEEEEECCEEEEccccc-ccCCCHHHHHHHhcCCcchHHHHH
Confidence 4669999999999975 59999999999999975 47999974 58999999999985
No 3
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=99.48 E-value=4e-14 Score=107.90 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=48.4
Q ss_pred cCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcc--cccccCChhHHHhh
Q 029303 73 LGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPY--AMFAGRDASRALAL 131 (195)
Q Consensus 73 ~~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG~Y--~~fAGrDaSrala~ 131 (195)
.+.||.+||++||+.+ +|||+|+|+|||||.... +||||.. ..+||+|||++|..
T Consensus 8 ~~~~t~~Ev~~h~~~~---~~wv~i~g~VYDvT~f~~-~HPGG~~~i~~~aGkDaT~~F~~ 64 (104)
T 1hko_A 8 VKYYTLEEIQKHNNSK---STWLILHYKVYDLTKFLE-EHPGGEEVLREQAGGDATENFED 64 (104)
T ss_dssp CEEECHHHHHHCBSSS---SBEEEETTEEEEHHHHSS-SSSSCSHHHHTTCSEECHHHHTT
T ss_pred CCccCHHHHHHhcCCC---CEEEEECCEEEECCcchh-hCcChHHHHHHhcCccchHHHHH
Confidence 3569999999999976 499999999999999764 7999975 57999999999975
No 4
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=99.46 E-value=3.2e-14 Score=103.52 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=47.1
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCC-cccccccCChhHH--Hhh
Q 029303 74 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGG-PYAMFAGRDASRA--LAL 131 (195)
Q Consensus 74 ~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG-~Y~~fAGrDaSra--la~ 131 (195)
+.||.+||++||+.+ .+||+|+|+|||||.... +|||| .+..+||+|||++ |..
T Consensus 4 ~~~t~~ev~~h~~~~---~~wv~i~g~VYDvT~f~~-~HPGG~~i~~~aG~D~T~~~~F~~ 60 (82)
T 1x3x_A 4 KKYTKEEVAKHNTQN---DLWIIYDGEVHDMTSFYK-EHPGGKVILNKAGQDATSVLKTLA 60 (82)
T ss_dssp CEECHHHHHTCEETT---EEEEEETTEEEECGGGGG-GCTTGGGGGGGTTSBCHHHHHHSH
T ss_pred CccCHHHHHhhCCCC---CEEEEECCEEEECCcchh-hCcChhhhhhhCCCCCchhhhhhc
Confidence 569999999999976 499999999999999864 79999 4458999999999 654
No 5
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=99.46 E-value=2.3e-14 Score=106.82 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=48.5
Q ss_pred cCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcc--cccccCChhHHHhh
Q 029303 73 LGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPY--AMFAGRDASRALAL 131 (195)
Q Consensus 73 ~~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG~Y--~~fAGrDaSrala~ 131 (195)
.+.||.+||++||+.+ +|||+|+|+|||||.... +||||.. ..+||+|||++|..
T Consensus 4 ~~~~t~~Ev~~h~~~~---~~wv~i~g~VYDvT~f~~-~HPGG~~~i~~~aG~DaT~~f~~ 60 (93)
T 1cyo_A 4 VKYYTLEEIQKHNNSK---STWLILHYKVYDLTKFLE-EHPGGEEVLREQAGGDATENFED 60 (93)
T ss_dssp CCEECHHHHTTCEETT---EEEEEETTEEEECTTTTT-TCTTCSHHHHHHTTSBCHHHHHH
T ss_pred CCccCHHHHHhhCCCC---CEEEEECCEEEECCCcch-hCcChHHHHHHhcCccchHHHHH
Confidence 3569999999999976 599999999999999864 7999974 57899999999985
No 6
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=99.45 E-value=6.5e-14 Score=103.61 Aligned_cols=55 Identities=22% Similarity=0.351 Sum_probs=48.6
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCc--ccccccCChhHHHhhc
Q 029303 74 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGP--YAMFAGRDASRALALM 132 (195)
Q Consensus 74 ~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG~--Y~~fAGrDaSrala~~ 132 (195)
+.||.+||++|++.+ +|||+|+|+|||||.... +||||. ...+||||||++|...
T Consensus 8 ~~~t~~Ev~~h~~~~---~~wv~i~g~VYDvT~f~~-~HPGG~~~i~~~aG~DaT~~f~~~ 64 (90)
T 1cxy_A 8 PVFTLEQVAEHHSPD---DCWMAIHGKVYDLTPYVP-NHPGPAGMMLVWCGQESTEAWETK 64 (90)
T ss_dssp CBCCHHHHTTCEETT---EEEEEETTEEEECTTTGG-GCCSSTTTTGGGTTSBCHHHHHHT
T ss_pred CCcCHHHHHHhcCCC---CEEEEECCEEEECccchh-hCcChHHHHHHHCCcchhHHHhhc
Confidence 569999999999976 599999999999999753 799996 4689999999999854
No 7
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=99.44 E-value=3.1e-14 Score=105.38 Aligned_cols=56 Identities=34% Similarity=0.519 Sum_probs=49.3
Q ss_pred cCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCc--ccccccCChhHHHhhc
Q 029303 73 LGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGP--YAMFAGRDASRALALM 132 (195)
Q Consensus 73 ~~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG~--Y~~fAGrDaSrala~~ 132 (195)
++.||.+||++||+.+ +|||+|+|+|||||.... +||||. ...+||+|||++|...
T Consensus 5 l~~~t~~Ev~~h~~~~---~~wv~i~g~VYDvT~f~~-~HPGG~~~l~~~aG~DaT~~F~~~ 62 (88)
T 3lf5_A 5 LIEVTEEELKKHNKKD---DCWICIRGFVYNVSPYME-YHPGGEDELMRAAGSDGTELFDQV 62 (88)
T ss_dssp SEEECHHHHHHCEETT---EEEEEETTEEEECGGGTT-TCTTCHHHHHTTTTEECHHHHHHH
T ss_pred CCEeCHHHHHhhCCCC---CEEEEECCEEEECccchh-hCcChhhhhhhcCCCcchHHHHHH
Confidence 4669999999999975 599999999999999864 699997 4689999999999853
No 8
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=99.44 E-value=4.6e-14 Score=103.74 Aligned_cols=55 Identities=25% Similarity=0.304 Sum_probs=48.4
Q ss_pred cCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcc--cccccCChhHHHhh
Q 029303 73 LGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPY--AMFAGRDASRALAL 131 (195)
Q Consensus 73 ~~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG~Y--~~fAGrDaSrala~ 131 (195)
.+.||.+||++||+.+ +|||+|+|+|||||.... +||||.. ..+||+|||++|..
T Consensus 6 ~~~~t~~ev~~h~~~~---~~wv~i~g~VYDvT~f~~-~HPGG~~~i~~~aG~DaT~~f~~ 62 (88)
T 2ibj_A 6 VKYFTRAEVAKNNTKD---KNWFIIHNNVYDVTAFLN-EHPGGEEVLIEQAGKDATEHFED 62 (88)
T ss_dssp CCEECHHHHHTSEETT---EEEEEETTEEEECGGGTT-TCTTCSHHHHTTTTEECHHHHHH
T ss_pred CCccCHHHHHHhCCCC---CEEEEECCEEEECCcchh-hCcCHHHHHHHhCCCcchHHHHH
Confidence 4669999999999965 699999999999999753 7999985 47999999999985
No 9
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=99.35 E-value=1.7e-13 Score=105.97 Aligned_cols=55 Identities=24% Similarity=0.312 Sum_probs=48.7
Q ss_pred cCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCc--ccccccCChhHHHhh
Q 029303 73 LGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGP--YAMFAGRDASRALAL 131 (195)
Q Consensus 73 ~~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG~--Y~~fAGrDaSrala~ 131 (195)
.+.||.+||++||+.+ +|||+|+|+|||||.... +||||. ...+||+|||++|..
T Consensus 23 ~~~~t~~Ev~~h~~~~---d~wvvi~G~VYDVT~fl~-~HPGG~~~l~~~aGkDaT~~F~~ 79 (112)
T 2keo_A 23 VTLVRIADLENHNNDG---GFWTVIDGKVYDIKDFQT-QSLTENSILAQFAGEDPVVALEA 79 (112)
T ss_dssp CCEECHHHHHHHHHHT---CCEEEETTEEEEHHHHHH-HHTSTTSTTGGGTTSCHHHHHHH
T ss_pred CCccCHHHHHHhcCCC---CEEEEECCEEEECCcchh-hCCCchhhhhhhCCccchHHHhH
Confidence 4679999999999975 499999999999998754 699997 468999999999986
No 10
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=99.21 E-value=2.8e-12 Score=93.27 Aligned_cols=54 Identities=19% Similarity=0.309 Sum_probs=44.1
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcc--cccccCChhHHHhh
Q 029303 74 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPY--AMFAGRDASRALAL 131 (195)
Q Consensus 74 ~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG~Y--~~fAGrDaSrala~ 131 (195)
+.||.+||++||+.++ +|||+|+|+|||||... -+||||.. ..+||+|+ .+|..
T Consensus 5 ~~~t~~ev~~h~~~~~--~~wv~i~g~VYDvt~f~-~~HPGG~~~il~~aG~Dt-~~f~~ 60 (82)
T 1mj4_A 5 HIYTKEEVSSHTSPET--GIWVTLGSEVFDVTEFV-DLHPGGPSKLMLAAGGPL-EPFWA 60 (82)
T ss_dssp CBCCCC-CTTCEETTT--EEEEEETTEEEECTTTG-GGSTTCHHHHHTTTTSBS-HHHHT
T ss_pred CccCHHHHHHhcCCCC--CeEEEECCEEEEchHHH-HhCCCHhHHHHHHcCCCh-HHHHh
Confidence 5699999999999762 69999999999999976 37999954 36899994 67764
No 11
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=98.94 E-value=3.3e-10 Score=105.77 Aligned_cols=56 Identities=23% Similarity=0.386 Sum_probs=49.0
Q ss_pred cCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcc--cccccCChhHHHhhc
Q 029303 73 LGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPY--AMFAGRDASRALALM 132 (195)
Q Consensus 73 ~~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG~Y--~~fAGrDaSrala~~ 132 (195)
.+.||.+||++||+.+ +|||+|+|+|||||... -+||||.. ..+||+|||+.|...
T Consensus 8 ~~~~t~~ev~~h~~~~---~~wv~i~g~VYDvt~f~-~~HPGG~~~i~~~aG~DaT~~f~~~ 65 (511)
T 1kbi_A 8 KQKISPAEVAKHNKPD---DCWVVINGYVYDLTRFL-PNHPGGQDVIKFNAGKDVTAIFEPL 65 (511)
T ss_dssp SCCBCTTHHHHCEETT---EEEEEETTEEEECTTTG-GGCTTCHHHHHTTTTSBCHHHHGGG
T ss_pred CCccCHHHHHHhCCCC---CEEEEECCEEEECCcch-hhCcChHHHHHHHcCcchhhhhhhc
Confidence 3569999999999976 49999999999999986 47999975 479999999999864
No 12
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A*
Probab=98.54 E-value=3.6e-08 Score=91.49 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=46.3
Q ss_pred cCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCc--ccccccCChhHHHhh
Q 029303 73 LGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGP--YAMFAGRDASRALAL 131 (195)
Q Consensus 73 ~~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG~--Y~~fAGrDaSrala~ 131 (195)
.+.||.+|+++||..++ .|||+|+|+|||||... -.||||. ...+||+| |.+|..
T Consensus 4 ~~~~t~~Ev~~H~~~~d--~~Wvii~g~VYDvT~fl-~~HPGG~~~il~~aG~D-T~~f~~ 60 (466)
T 1sox_A 4 YPEYTREEVGRHRSPEE--RVWVTHGTDVFDVTDFV-ELHPGGPDKILLAAGGA-LEPFWA 60 (466)
T ss_dssp CCEECHHHHTTCEETTT--EEEEEETTEEEECTTTT-TTSTTCHHHHGGGTTSB-SHHHHH
T ss_pred CCeeCHHHHHHhcCCCC--ceEEEECCEEEechHhH-hhCcCCcccchhhcCCc-cccccc
Confidence 35699999999998762 49999999999999975 3699993 45789999 888864
No 13
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=32.37 E-value=38 Score=20.33 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 029303 13 AAFFTILALMCVVYKTVCS 31 (195)
Q Consensus 13 ~~~~t~~~~~~~~y~~~~~ 31 (195)
.+|..++++++++|.++++
T Consensus 10 ~NFt~vLI~vlLi~llVrs 28 (31)
T 1jdm_A 10 LNFTIVLITVILMWLLVRS 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3555677777888888764
No 14
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=25.31 E-value=60 Score=21.40 Aligned_cols=17 Identities=24% Similarity=0.379 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 029303 14 AFFTILALMCVVYKTVC 30 (195)
Q Consensus 14 ~~~t~~~~~~~~y~~~~ 30 (195)
+|.+|+++++++|.++.
T Consensus 34 nfclilicllli~iivm 50 (52)
T 1fjk_A 34 NFCLILIFLLLICIIVM 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56667777888887764
No 15
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=25.18 E-value=76 Score=18.11 Aligned_cols=19 Identities=21% Similarity=0.574 Sum_probs=16.3
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q 029303 144 EGLSDSELEVLQDWEYKFM 162 (195)
Q Consensus 144 s~L~~~el~~L~~W~~~F~ 162 (195)
.||+..+...+..|+.+..
T Consensus 2 rgltsrdrrriarwekria 20 (26)
T 1hji_B 2 RGLTSRDRRRIARWEKRIA 20 (26)
T ss_dssp CSSCHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHHH
Confidence 5899999999999998753
No 16
>2yim_A Probable alpha-methylacyl-COA racemase MCR (2-methylacyl-COA racemase) (2-arylpropionyl-COA...; isomerase, methyl-COA racemase; HET: MC4; 1.41A {Mycobacterium tuberculosis} PDB: 2gce_A* 1x74_A* 2gd0_A* 2gd2_A* 2gd6_A* 2gci_A*
Probab=22.63 E-value=69 Score=28.17 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=31.9
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcccccccCChhHH
Q 029303 74 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRA 128 (195)
Q Consensus 74 ~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG~Y~~fAGrDaSra 128 (195)
.-+..++|++-|=. =||++|.| ||..|||...+|.|..-.
T Consensus 92 lGl~ye~L~~~nP~----LIy~sisG-----------fG~~GP~~~~pg~D~~~q 131 (360)
T 2yim_A 92 LGLGPEECAKVNDR----LIYARMTG-----------WGQTGPRSQQAGHDINYI 131 (360)
T ss_dssp HTCSHHHHHHHCTT----CEEEEEES-----------SCSSSTTTTSCCCHHHHH
T ss_pred cCCCHHHHHHhCCC----eEEEEEec-----------CCCCCCCCCCCCcHHHHH
Confidence 35889999987543 48888766 799999999999997654
No 17
>2g04_A Probable fatty-acid-COA racemase FAR; isomerase; 2.70A {Mycobacterium tuberculosis}
Probab=22.52 E-value=70 Score=28.13 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=32.6
Q ss_pred ccCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcccccccCChhHH
Q 029303 72 QLGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRA 128 (195)
Q Consensus 72 ~~~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG~Y~~fAGrDaSra 128 (195)
...-+..++|++-|= +=||++|.| ||..|||...+|.|..-.
T Consensus 92 ~rlGl~ye~L~~~nP----~LIy~sisG-----------fG~~GP~a~~pg~D~~~q 133 (359)
T 2g04_A 92 ERLGIGPDDCASVNP----RLIFARITG-----------WGQDGPLASTAGHDINYL 133 (359)
T ss_dssp HHSSCSHHHHHHHCT----TCEEEEEES-----------SCSSSSGGGSCCCHHHHH
T ss_pred HHhCCCHHHHHHhCC----CeEEEEEec-----------CCCCCCCcCCCCchHHHH
Confidence 334588999998754 348888766 799999999999997654
No 18
>2wzp_P Lactococcal phage P2 ORF15; baseplate, viral protein; 2.60A {Lactococcus phage P2} PDB: 2x53_S 2x54_S 2x5a_S
Probab=21.10 E-value=32 Score=29.55 Aligned_cols=16 Identities=31% Similarity=0.872 Sum_probs=13.3
Q ss_pred CeEEeccccc-ccccCC
Q 029303 99 GQIYDVSRSR-MFYGPG 114 (195)
Q Consensus 99 G~VYDVT~g~-~fYgPG 114 (195)
.+|+|||+|+ .||.|.
T Consensus 44 dkvwdvtngkvrfyqps 60 (326)
T 2wzp_P 44 DKVWDVTNGKVRFYQPS 60 (326)
T ss_dssp CCEEETTTSSEEEECCS
T ss_pred cceEeecCCeEEEecCc
Confidence 5789999985 599986
No 19
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=20.66 E-value=88 Score=21.24 Aligned_cols=33 Identities=6% Similarity=-0.024 Sum_probs=25.7
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccc
Q 029303 74 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRS 107 (195)
Q Consensus 74 ~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g 107 (195)
...|..+|.+.-|-+ .+.+-|++||.|..=+.+
T Consensus 13 ~~~Tl~~LL~~l~~~-~~~vAV~vNg~iVpr~~~ 45 (73)
T 2kl0_A 13 QSASVAALMTELDCT-GGHFAVALNYDVVPRGKW 45 (73)
T ss_dssp CCSBHHHHHHHTTCC-SSSCEEEESSSEECHHHH
T ss_pred CCCcHHHHHHHcCCC-CCcEEEEECCEECChHHc
Confidence 347899999888876 467899999999665543
No 20
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=20.11 E-value=1e+02 Score=19.95 Aligned_cols=29 Identities=28% Similarity=0.154 Sum_probs=23.1
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEecc
Q 029303 76 VTEHELRAYDGSDPNKPLLMAIKGQIYDVS 105 (195)
Q Consensus 76 fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT 105 (195)
.|..+|.+.-+.. ...+.+++||.+-+-+
T Consensus 16 ~tv~~ll~~l~~~-~~~v~vavN~~~v~~~ 44 (66)
T 1f0z_A 16 QTVHELLEQLDQR-QAGAALAINQQIVPRE 44 (66)
T ss_dssp CCHHHHHHHHTCC-CSSEEEEETTEEECHH
T ss_pred CcHHHHHHHcCCC-CCCEEEEECCEECCch
Confidence 6888988887766 4579999999996644
Done!