Query 029304
Match_columns 195
No_of_seqs 133 out of 1912
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 10:46:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 1E-28 2.3E-33 167.6 16.8 151 30-181 8-158 (160)
2 KOG0027 Calmodulin and related 99.9 1.2E-25 2.6E-30 155.3 17.0 145 36-180 2-150 (151)
3 PTZ00183 centrin; Provisional 99.9 1.2E-23 2.6E-28 146.5 18.4 149 33-181 8-156 (158)
4 KOG0028 Ca2+-binding protein ( 99.9 3.8E-23 8.1E-28 137.6 15.5 151 30-180 21-171 (172)
5 PTZ00184 calmodulin; Provision 99.9 7.3E-23 1.6E-27 141.1 17.4 146 34-179 3-148 (149)
6 KOG0031 Myosin regulatory ligh 99.9 4.7E-22 1E-26 131.5 15.3 150 27-180 17-166 (171)
7 KOG0030 Myosin essential light 99.8 1.2E-19 2.6E-24 118.2 11.8 144 35-179 4-151 (152)
8 KOG0037 Ca2+-binding protein, 99.8 2.3E-18 5E-23 120.8 18.1 135 41-182 56-191 (221)
9 KOG0034 Ca2+/calmodulin-depend 99.8 6.8E-19 1.5E-23 123.8 15.5 146 34-183 25-179 (187)
10 KOG0036 Predicted mitochondria 99.8 2.9E-17 6.3E-22 124.9 16.2 143 34-182 6-149 (463)
11 KOG0044 Ca2+ sensor (EF-Hand s 99.8 3.2E-17 6.8E-22 115.4 13.9 147 33-182 20-178 (193)
12 PLN02964 phosphatidylserine de 99.5 5E-13 1.1E-17 109.8 13.6 122 33-159 134-273 (644)
13 KOG0037 Ca2+-binding protein, 99.4 1.8E-12 3.8E-17 91.5 11.1 128 38-178 90-219 (221)
14 KOG4223 Reticulocalbin, calume 99.4 2.2E-12 4.7E-17 96.0 10.1 137 39-175 160-301 (325)
15 cd05022 S-100A13 S-100A13: S-1 99.4 1.9E-12 4.1E-17 80.6 7.1 67 114-180 7-76 (89)
16 PF13499 EF-hand_7: EF-hand do 99.4 3.9E-12 8.5E-17 75.3 7.5 62 116-177 1-66 (66)
17 KOG0038 Ca2+-binding kinase in 99.4 3E-11 6.5E-16 79.8 11.5 145 35-183 21-181 (189)
18 KOG4223 Reticulocalbin, calume 99.3 1.7E-11 3.6E-16 91.3 10.5 148 35-182 69-231 (325)
19 KOG0044 Ca2+ sensor (EF-Hand s 99.3 8.6E-12 1.9E-16 88.1 8.4 102 42-143 64-175 (193)
20 KOG0027 Calmodulin and related 99.3 2.9E-11 6.4E-16 83.5 10.4 105 77-182 7-116 (151)
21 PF13499 EF-hand_7: EF-hand do 99.3 1.7E-11 3.7E-16 72.6 7.7 62 43-104 1-66 (66)
22 cd05027 S-100B S-100B: S-100B 99.3 2.7E-11 5.8E-16 75.5 7.9 66 115-180 8-80 (88)
23 KOG0377 Protein serine/threoni 99.3 8.6E-11 1.9E-15 90.8 12.2 140 42-183 464-619 (631)
24 cd05022 S-100A13 S-100A13: S-1 99.3 2.5E-11 5.3E-16 75.6 7.7 68 39-106 5-75 (89)
25 PTZ00183 centrin; Provisional 99.3 1.1E-10 2.5E-15 81.0 11.4 102 78-180 17-119 (158)
26 smart00027 EH Eps15 homology d 99.2 1.1E-10 2.3E-15 74.4 8.8 70 35-106 3-72 (96)
27 COG5126 FRQ1 Ca2+-binding prot 99.2 3.6E-10 7.8E-15 77.3 11.1 102 78-181 20-122 (160)
28 cd05027 S-100B S-100B: S-100B 99.2 1.6E-10 3.4E-15 72.1 8.6 67 40-106 6-79 (88)
29 PTZ00184 calmodulin; Provision 99.2 3.9E-10 8.5E-15 77.4 11.2 102 78-180 11-113 (149)
30 cd05029 S-100A6 S-100A6: S-100 99.2 1.4E-10 3.1E-15 72.3 7.9 66 115-180 10-80 (88)
31 KOG0034 Ca2+/calmodulin-depend 99.2 6.6E-10 1.4E-14 78.5 10.9 113 32-144 47-176 (187)
32 PF13833 EF-hand_8: EF-hand do 99.2 1.7E-10 3.8E-15 65.3 6.5 52 128-179 1-53 (54)
33 cd05025 S-100A1 S-100A1: S-100 99.2 2.9E-10 6.2E-15 71.8 8.0 67 114-180 8-81 (92)
34 cd05031 S-100A10_like S-100A10 99.2 2.3E-10 5E-15 72.5 7.6 69 114-182 7-82 (94)
35 cd05026 S-100Z S-100Z: S-100Z 99.1 3.2E-10 6.9E-15 71.6 7.8 66 115-180 10-82 (93)
36 cd05029 S-100A6 S-100A6: S-100 99.1 6.2E-10 1.3E-14 69.4 8.5 69 38-106 6-79 (88)
37 smart00027 EH Eps15 homology d 99.1 8E-10 1.7E-14 70.3 8.6 68 113-182 8-75 (96)
38 cd00052 EH Eps15 homology doma 99.1 4.6E-10 1E-14 66.4 6.9 60 118-179 2-61 (67)
39 cd00213 S-100 S-100: S-100 dom 99.1 7.4E-10 1.6E-14 69.3 7.8 69 38-106 4-79 (88)
40 cd05026 S-100Z S-100Z: S-100Z 99.1 1.2E-09 2.6E-14 69.0 8.4 68 39-106 7-81 (93)
41 KOG0028 Ca2+-binding protein ( 99.1 3.1E-09 6.7E-14 71.5 10.4 104 78-182 33-137 (172)
42 cd00213 S-100 S-100: S-100 dom 99.1 1.1E-09 2.4E-14 68.6 7.8 67 114-180 7-80 (88)
43 cd00051 EFh EF-hand, calcium b 99.1 1.7E-09 3.6E-14 62.6 7.9 61 117-177 2-62 (63)
44 KOG2643 Ca2+ binding protein, 99.1 9.1E-10 2E-14 85.1 8.4 142 45-192 321-466 (489)
45 cd05031 S-100A10_like S-100A10 99.1 1.6E-09 3.4E-14 68.7 8.2 67 40-106 6-79 (94)
46 PLN02964 phosphatidylserine de 99.1 3.7E-09 8E-14 87.4 12.4 124 56-180 118-244 (644)
47 cd05025 S-100A1 S-100A1: S-100 99.0 2.3E-09 5.1E-14 67.6 8.6 66 41-106 8-80 (92)
48 cd05023 S-100A11 S-100A11: S-1 99.0 1.8E-09 3.9E-14 67.4 7.8 67 114-180 8-81 (89)
49 PF13833 EF-hand_8: EF-hand do 99.0 1.5E-09 3.3E-14 61.4 6.8 52 55-106 1-53 (54)
50 cd00052 EH Eps15 homology doma 99.0 1.4E-09 3.1E-14 64.3 6.9 60 45-106 2-61 (67)
51 KOG2562 Protein phosphatase 2 99.0 3.5E-09 7.5E-14 82.5 10.0 139 33-175 269-420 (493)
52 cd00051 EFh EF-hand, calcium b 99.0 4.4E-09 9.5E-14 60.8 7.5 61 44-104 2-62 (63)
53 cd05023 S-100A11 S-100A11: S-1 98.9 9.9E-09 2.1E-13 64.1 8.3 69 38-106 5-80 (89)
54 PF14658 EF-hand_9: EF-hand do 98.9 6.3E-09 1.4E-13 60.1 6.7 61 119-179 2-64 (66)
55 KOG0040 Ca2+-binding actin-bun 98.9 4E-08 8.6E-13 85.8 13.6 141 30-178 2241-2397(2399)
56 cd00252 SPARC_EC SPARC_EC; ext 98.9 1.1E-08 2.4E-13 66.9 8.0 63 113-179 46-108 (116)
57 cd00252 SPARC_EC SPARC_EC; ext 98.9 1.8E-08 4E-13 65.9 8.0 65 36-104 42-106 (116)
58 KOG0036 Predicted mitochondria 98.8 7.7E-08 1.7E-12 74.2 11.3 128 41-179 50-183 (463)
59 PF14658 EF-hand_9: EF-hand do 98.8 2.7E-08 5.9E-13 57.5 6.7 61 46-106 2-64 (66)
60 cd05030 calgranulins Calgranul 98.8 2.4E-08 5.2E-13 62.4 6.8 66 115-180 8-80 (88)
61 cd05030 calgranulins Calgranul 98.8 5.8E-08 1.3E-12 60.6 7.3 68 39-106 5-79 (88)
62 KOG4251 Calcium binding protei 98.7 7.3E-08 1.6E-12 69.6 7.7 140 42-181 101-311 (362)
63 KOG0041 Predicted Ca2+-binding 98.7 1E-07 2.2E-12 66.7 8.1 69 114-182 98-166 (244)
64 PF12763 EF-hand_4: Cytoskelet 98.7 1.5E-07 3.2E-12 60.3 7.7 70 34-106 2-71 (104)
65 KOG0041 Predicted Ca2+-binding 98.7 2.2E-07 4.8E-12 65.0 8.3 109 33-141 90-201 (244)
66 KOG2643 Ca2+ binding protein, 98.6 2.5E-06 5.4E-11 66.5 12.6 131 43-179 234-384 (489)
67 PF00036 EF-hand_1: EF hand; 98.5 1.7E-07 3.6E-12 45.6 3.5 27 117-143 2-28 (29)
68 cd05024 S-100A10 S-100A10: A s 98.5 1.9E-06 4.1E-11 53.5 8.1 65 115-180 8-77 (91)
69 PF00036 EF-hand_1: EF hand; 98.5 3.4E-07 7.4E-12 44.5 3.6 27 44-70 2-28 (29)
70 cd05024 S-100A10 S-100A10: A s 98.4 3.4E-06 7.4E-11 52.3 8.6 67 39-106 5-76 (91)
71 KOG0031 Myosin regulatory ligh 98.4 2.2E-06 4.7E-11 57.7 7.7 64 42-105 101-164 (171)
72 KOG0751 Mitochondrial aspartat 98.4 8.5E-06 1.8E-10 64.6 11.6 104 38-144 32-137 (694)
73 PF13405 EF-hand_6: EF-hand do 98.3 7.9E-07 1.7E-11 44.0 3.6 30 116-145 1-31 (31)
74 KOG0169 Phosphoinositide-speci 98.3 2.3E-05 5E-10 65.2 13.9 147 33-184 127-279 (746)
75 PF12763 EF-hand_4: Cytoskelet 98.3 6.6E-06 1.4E-10 52.8 8.0 63 114-179 9-71 (104)
76 KOG4666 Predicted phosphate ac 98.3 9.3E-07 2E-11 66.4 4.4 106 78-184 259-364 (412)
77 PF13405 EF-hand_6: EF-hand do 98.2 2.1E-06 4.6E-11 42.5 3.6 30 43-72 1-31 (31)
78 KOG0030 Myosin essential light 98.2 2.7E-05 5.9E-10 51.6 9.1 102 78-180 11-117 (152)
79 PF14788 EF-hand_10: EF hand; 98.2 1.1E-05 2.5E-10 44.0 6.0 49 58-106 1-49 (51)
80 KOG1029 Endocytic adaptor prot 98.2 4.6E-05 1E-09 63.5 12.1 140 35-179 9-257 (1118)
81 KOG0751 Mitochondrial aspartat 98.1 1.7E-05 3.7E-10 63.0 8.5 124 43-174 109-239 (694)
82 PRK12309 transaldolase/EF-hand 98.1 1.3E-05 2.8E-10 63.3 7.6 54 114-180 333-386 (391)
83 PF13202 EF-hand_5: EF hand; P 98.1 6.3E-06 1.4E-10 38.5 3.0 23 118-140 2-24 (25)
84 PF14788 EF-hand_10: EF hand; 98.0 3.6E-05 7.8E-10 42.1 5.9 47 132-178 2-48 (51)
85 KOG0377 Protein serine/threoni 98.0 3.3E-05 7.2E-10 60.6 7.4 69 76-144 545-616 (631)
86 KOG2562 Protein phosphatase 2 97.9 4E-05 8.6E-10 60.4 6.7 136 43-182 226-382 (493)
87 PRK12309 transaldolase/EF-hand 97.9 7.6E-05 1.7E-09 59.0 8.1 59 72-144 328-386 (391)
88 KOG0046 Ca2+-binding actin-bun 97.9 6.5E-05 1.4E-09 60.1 7.5 74 32-106 9-85 (627)
89 PF13202 EF-hand_5: EF hand; P 97.9 2.3E-05 4.9E-10 36.6 3.1 23 45-67 2-24 (25)
90 KOG0038 Ca2+-binding kinase in 97.8 0.00017 3.7E-09 48.3 7.9 99 46-144 75-178 (189)
91 PF10591 SPARC_Ca_bdg: Secrete 97.8 1.6E-05 3.6E-10 51.8 2.0 62 39-102 51-112 (113)
92 KOG1707 Predicted Ras related/ 97.7 0.00028 6.2E-09 57.5 8.8 142 32-176 185-374 (625)
93 KOG0040 Ca2+-binding actin-bun 97.6 0.00016 3.4E-09 64.5 6.8 68 115-182 2253-2327(2399)
94 PF09279 EF-hand_like: Phospho 97.6 0.00037 8E-09 42.8 6.8 65 117-182 2-72 (83)
95 PF10591 SPARC_Ca_bdg: Secrete 97.6 2.9E-05 6.3E-10 50.7 1.8 60 114-175 53-112 (113)
96 KOG4666 Predicted phosphate ac 97.6 0.00026 5.7E-09 53.6 6.1 104 39-144 256-360 (412)
97 KOG0998 Synaptic vesicle prote 97.4 0.00057 1.2E-08 59.4 6.8 150 29-183 116-349 (847)
98 KOG0046 Ca2+-binding actin-bun 97.2 0.0018 3.8E-08 52.2 7.6 68 114-182 18-88 (627)
99 KOG0035 Ca2+-binding actin-bun 97.2 0.0054 1.2E-07 52.8 10.4 109 30-139 735-848 (890)
100 smart00054 EFh EF-hand, calciu 97.1 0.00083 1.8E-08 31.5 3.0 27 44-70 2-28 (29)
101 KOG1955 Ral-GTPase effector RA 97.1 0.0021 4.5E-08 51.6 6.5 74 33-108 222-295 (737)
102 KOG4065 Uncharacterized conser 97.0 0.0038 8.2E-08 40.2 6.4 59 118-176 70-142 (144)
103 smart00054 EFh EF-hand, calciu 97.0 0.0016 3.4E-08 30.5 3.5 25 118-142 3-27 (29)
104 KOG4065 Uncharacterized conser 96.8 0.009 2E-07 38.5 6.7 71 31-103 58-142 (144)
105 PF09279 EF-hand_like: Phospho 96.8 0.0087 1.9E-07 36.7 6.3 63 43-106 1-69 (83)
106 KOG4251 Calcium binding protei 96.7 0.0021 4.6E-08 47.0 3.5 64 116-179 102-168 (362)
107 PF05042 Caleosin: Caleosin re 96.6 0.032 6.9E-07 38.9 8.6 134 43-177 8-164 (174)
108 KOG0042 Glycerol-3-phosphate d 96.2 0.021 4.5E-07 46.9 6.9 81 28-108 579-659 (680)
109 KOG3555 Ca2+-binding proteogly 96.1 0.013 2.8E-07 45.0 4.8 107 34-145 199-312 (434)
110 PLN02952 phosphoinositide phos 96.0 0.062 1.3E-06 45.1 9.1 88 92-180 14-111 (599)
111 KOG1265 Phospholipase C [Lipid 96.0 0.2 4.3E-06 43.5 12.0 121 52-179 158-299 (1189)
112 KOG3555 Ca2+-binding proteogly 95.7 0.018 3.8E-07 44.3 4.2 70 34-107 242-311 (434)
113 KOG1955 Ral-GTPase effector RA 95.7 0.041 8.8E-07 44.5 6.3 63 114-178 230-292 (737)
114 PF09069 EF-hand_3: EF-hand; 95.5 0.23 4.9E-06 30.9 8.0 65 115-182 3-78 (90)
115 PF05517 p25-alpha: p25-alpha 95.4 0.13 2.8E-06 35.6 7.4 62 45-106 2-69 (154)
116 KOG4347 GTPase-activating prot 95.3 0.037 7.9E-07 46.1 5.0 106 30-137 492-612 (671)
117 PF05042 Caleosin: Caleosin re 95.2 0.14 3E-06 35.8 6.8 36 147-182 92-127 (174)
118 KOG0042 Glycerol-3-phosphate d 94.8 0.085 1.9E-06 43.5 5.8 69 115-183 593-661 (680)
119 KOG0169 Phosphoinositide-speci 94.8 0.44 9.5E-06 40.7 9.9 99 77-180 135-233 (746)
120 PF05517 p25-alpha: p25-alpha 94.8 0.24 5.2E-06 34.2 7.3 52 127-178 14-68 (154)
121 KOG1029 Endocytic adaptor prot 94.2 0.24 5.1E-06 42.4 7.1 66 39-106 192-257 (1118)
122 KOG2243 Ca2+ release channel ( 93.8 0.13 2.9E-06 46.8 5.2 60 46-106 4061-4120(5019)
123 KOG1264 Phospholipase C [Lipid 93.7 0.6 1.3E-05 40.5 8.7 149 34-183 135-297 (1267)
124 KOG4347 GTPase-activating prot 93.6 0.18 3.8E-06 42.2 5.4 78 95-173 535-612 (671)
125 KOG4578 Uncharacterized conser 93.5 0.046 1E-06 41.8 1.7 62 45-106 336-398 (421)
126 KOG4578 Uncharacterized conser 93.3 0.11 2.4E-06 39.8 3.5 68 116-183 334-402 (421)
127 KOG3866 DNA-binding protein of 92.9 0.23 5E-06 37.9 4.7 23 154-176 299-321 (442)
128 PF08726 EFhand_Ca_insen: Ca2+ 92.7 0.13 2.7E-06 30.3 2.5 54 115-176 6-66 (69)
129 KOG0998 Synaptic vesicle prote 92.6 0.21 4.7E-06 43.9 4.7 136 42-182 11-193 (847)
130 KOG2243 Ca2+ release channel ( 92.3 0.29 6.3E-06 44.8 5.1 62 119-181 4061-4122(5019)
131 PLN02952 phosphoinositide phos 91.9 1.7 3.7E-05 36.8 9.0 87 55-142 13-109 (599)
132 cd07313 terB_like_2 tellurium 91.6 2.3 5E-05 26.9 7.7 83 55-139 12-96 (104)
133 PF08976 DUF1880: Domain of un 91.2 0.24 5.3E-06 32.1 2.7 35 147-181 3-37 (118)
134 PF08414 NADPH_Ox: Respiratory 89.9 2.1 4.5E-05 27.0 5.9 61 41-106 29-92 (100)
135 PF08726 EFhand_Ca_insen: Ca2+ 88.0 0.33 7.2E-06 28.6 1.4 53 42-102 6-65 (69)
136 PF08976 DUF1880: Domain of un 87.8 0.52 1.1E-05 30.6 2.3 33 74-106 3-35 (118)
137 PLN02222 phosphoinositide phos 87.2 3 6.6E-05 35.2 7.0 64 115-180 25-91 (581)
138 COG4103 Uncharacterized protei 86.4 8.1 0.00018 26.2 8.5 94 46-143 34-129 (148)
139 KOG0035 Ca2+-binding actin-bun 86.4 2.5 5.5E-05 37.2 6.3 68 114-181 746-818 (890)
140 PLN02230 phosphoinositide phos 85.5 5.3 0.00011 34.0 7.6 65 115-180 29-103 (598)
141 KOG4286 Dystrophin-like protei 85.5 1.7 3.8E-05 37.3 4.8 143 39-185 417-586 (966)
142 KOG3866 DNA-binding protein of 85.4 7.5 0.00016 30.0 7.6 83 60-142 225-323 (442)
143 PLN02228 Phosphoinositide phos 85.3 5.2 0.00011 33.8 7.5 64 115-180 24-93 (567)
144 KOG1707 Predicted Ras related/ 84.5 3.5 7.6E-05 34.6 6.0 69 32-106 305-377 (625)
145 KOG2871 Uncharacterized conser 78.7 1.9 4.1E-05 34.0 2.5 64 42-105 309-373 (449)
146 PF05099 TerB: Tellurite resis 75.7 7.9 0.00017 25.9 4.7 81 55-137 36-118 (140)
147 PF08414 NADPH_Ox: Respiratory 75.0 18 0.0004 22.9 6.9 62 77-144 29-93 (100)
148 PF01023 S_100: S-100/ICaBP ty 73.5 12 0.00025 19.8 4.1 31 40-70 4-36 (44)
149 PF12174 RST: RCD1-SRO-TAF4 (R 73.2 10 0.00022 22.4 4.1 47 94-144 8-54 (70)
150 PF07308 DUF1456: Protein of u 72.8 17 0.00036 21.4 5.0 45 132-176 14-58 (68)
151 PF14513 DAG_kinase_N: Diacylg 72.4 11 0.00023 25.6 4.6 36 92-127 46-81 (138)
152 PLN02223 phosphoinositide phos 71.7 22 0.00048 29.9 7.0 66 115-181 16-94 (537)
153 KOG3449 60S acidic ribosomal p 71.6 24 0.00053 22.7 6.4 54 117-175 3-56 (112)
154 KOG3077 Uncharacterized conser 71.4 42 0.00091 25.4 11.9 68 40-107 62-130 (260)
155 PF14513 DAG_kinase_N: Diacylg 71.0 16 0.00034 24.8 5.1 35 129-163 46-81 (138)
156 PF11116 DUF2624: Protein of u 70.9 22 0.00047 21.9 6.0 47 130-176 13-59 (85)
157 KOG0506 Glutaminase (contains 70.2 36 0.00078 28.2 7.6 61 46-106 90-158 (622)
158 PF06648 DUF1160: Protein of u 69.9 23 0.00049 23.5 5.5 50 111-163 33-83 (122)
159 PF02761 Cbl_N2: CBL proto-onc 68.1 26 0.00055 21.6 6.3 69 74-144 3-71 (85)
160 PF09069 EF-hand_3: EF-hand; 67.5 27 0.00059 21.7 9.1 63 42-107 3-76 (90)
161 KOG4403 Cell surface glycoprot 66.7 45 0.00098 27.2 7.4 75 74-152 64-139 (575)
162 KOG0039 Ferric reductase, NADH 66.6 15 0.00033 31.8 5.3 64 114-178 17-88 (646)
163 PF00404 Dockerin_1: Dockerin 66.3 8 0.00017 16.9 2.0 16 52-67 1-16 (21)
164 PRK09430 djlA Dna-J like membr 65.2 59 0.0013 24.8 9.7 103 54-159 67-174 (267)
165 PLN02222 phosphoinositide phos 65.1 32 0.00069 29.4 6.8 63 42-106 25-90 (581)
166 PLN02228 Phosphoinositide phos 65.1 45 0.00097 28.4 7.6 63 42-106 24-92 (567)
167 PF09068 EF-hand_2: EF hand; 64.0 40 0.00088 22.4 8.2 28 116-143 98-125 (127)
168 KOG4004 Matricellular protein 63.9 3.8 8.2E-05 29.4 1.1 47 92-141 202-248 (259)
169 PF11116 DUF2624: Protein of u 63.7 32 0.00069 21.2 8.1 68 57-124 13-82 (85)
170 cd07313 terB_like_2 tellurium 63.2 16 0.00035 23.0 3.9 26 118-143 40-65 (104)
171 TIGR01848 PHA_reg_PhaR polyhyd 63.2 27 0.00059 22.4 4.7 20 87-106 12-31 (107)
172 KOG4301 Beta-dystrobrevin [Cyt 62.2 52 0.0011 26.0 6.9 94 81-181 113-217 (434)
173 KOG2871 Uncharacterized conser 61.1 14 0.0003 29.4 3.7 62 115-176 309-371 (449)
174 PF12174 RST: RCD1-SRO-TAF4 (R 60.4 16 0.00034 21.6 3.1 48 58-108 8-55 (70)
175 cd07176 terB tellurite resista 59.7 33 0.0007 21.6 4.9 81 55-138 15-100 (111)
176 KOG1954 Endocytosis/signaling 59.4 18 0.00039 29.0 4.1 57 44-103 446-502 (532)
177 PLN02230 phosphoinositide phos 59.1 67 0.0015 27.6 7.6 65 41-106 28-102 (598)
178 COG4359 Uncharacterized conser 58.3 63 0.0014 23.3 6.2 16 92-107 11-26 (220)
179 PF13075 DUF3939: Protein of u 58.0 5.7 0.00012 26.7 1.1 51 131-185 9-59 (140)
180 PF03672 UPF0154: Uncharacteri 57.7 32 0.0007 19.9 4.0 33 129-161 29-61 (64)
181 KOG0506 Glutaminase (contains 57.7 20 0.00042 29.6 4.1 64 118-181 89-160 (622)
182 PF13608 Potyvirid-P3: Protein 56.7 19 0.00042 29.6 4.1 66 39-106 286-355 (445)
183 PF07308 DUF1456: Protein of u 56.5 39 0.00084 19.8 4.6 33 59-91 14-46 (68)
184 PTZ00373 60S Acidic ribosomal 54.9 57 0.0012 21.3 5.8 53 118-175 6-58 (112)
185 PF07879 PHB_acc_N: PHB/PHA ac 54.0 27 0.00059 20.1 3.2 22 122-143 10-31 (64)
186 PLN03225 Serine/threonine-prot 54.0 33 0.00072 29.2 5.2 98 3-103 442-545 (566)
187 KOG1265 Phospholipase C [Lipid 53.4 1.8E+02 0.0039 26.5 9.5 90 87-183 157-253 (1189)
188 PF13623 SurA_N_2: SurA N-term 53.4 70 0.0015 21.8 7.3 39 138-176 96-144 (145)
189 KOG3449 60S acidic ribosomal p 51.9 63 0.0014 20.9 5.2 44 44-87 3-46 (112)
190 PF12987 DUF3871: Domain of un 51.8 65 0.0014 24.9 5.8 56 128-183 214-289 (323)
191 PF02337 Gag_p10: Retroviral G 51.4 31 0.00067 21.5 3.5 42 135-176 12-58 (90)
192 TIGR01639 P_fal_TIGR01639 Plas 51.1 44 0.00095 19.0 3.9 31 57-87 8-38 (61)
193 cd07316 terB_like_DjlA N-termi 50.8 60 0.0013 20.3 7.6 80 55-138 12-96 (106)
194 PF02761 Cbl_N2: CBL proto-onc 50.0 59 0.0013 20.0 7.7 68 35-106 3-70 (85)
195 KOG2301 Voltage-gated Ca2+ cha 49.6 16 0.00035 34.9 2.9 71 35-106 1410-1484(1592)
196 PRK00523 hypothetical protein; 49.5 49 0.0011 19.6 3.9 33 128-160 36-68 (72)
197 COG3763 Uncharacterized protei 49.3 54 0.0012 19.3 4.1 34 128-161 35-68 (71)
198 COG4103 Uncharacterized protei 48.8 85 0.0018 21.4 7.6 60 119-180 34-95 (148)
199 PLN02223 phosphoinositide phos 48.3 1.1E+02 0.0023 26.0 7.1 65 41-106 15-92 (537)
200 cd05833 Ribosomal_P2 Ribosomal 46.1 81 0.0018 20.4 5.8 56 119-179 5-60 (109)
201 KOG4004 Matricellular protein 45.7 10 0.00022 27.4 0.8 54 124-179 196-250 (259)
202 PF09336 Vps4_C: Vps4 C termin 44.3 37 0.00081 19.4 2.9 26 131-156 29-54 (62)
203 PF12419 DUF3670: SNF2 Helicas 44.0 50 0.0011 22.3 4.0 49 128-176 80-138 (141)
204 PF13551 HTH_29: Winged helix- 43.8 80 0.0017 19.7 7.0 52 36-87 58-111 (112)
205 PF14410 GH-E: HNH/ENDO VII su 43.5 27 0.00058 20.6 2.3 34 158-191 31-64 (70)
206 PF00046 Homeobox: Homeobox do 43.2 56 0.0012 17.7 6.1 47 33-86 4-50 (57)
207 PF08461 HTH_12: Ribonuclease 43.1 62 0.0013 18.7 3.8 37 55-91 10-46 (66)
208 cd00086 homeodomain Homeodomai 42.7 56 0.0012 17.7 6.7 47 34-87 5-51 (59)
209 KOG1785 Tyrosine kinase negati 42.2 1.9E+02 0.0041 23.6 7.4 116 75-195 172-296 (563)
210 TIGR03573 WbuX N-acetyl sugar 42.0 74 0.0016 25.1 5.2 43 129-177 300-342 (343)
211 PF03979 Sigma70_r1_1: Sigma-7 41.8 43 0.00093 20.2 3.1 34 56-91 19-52 (82)
212 PF01885 PTS_2-RNA: RNA 2'-pho 41.7 55 0.0012 23.4 4.1 36 126-161 27-62 (186)
213 PF08730 Rad33: Rad33; InterP 41.3 1.3E+02 0.0027 21.3 10.9 40 34-74 6-45 (170)
214 KOG1785 Tyrosine kinase negati 41.1 2E+02 0.0043 23.5 7.4 105 32-144 168-275 (563)
215 PRK01844 hypothetical protein; 40.9 78 0.0017 18.8 3.9 33 128-160 35-67 (72)
216 PF04157 EAP30: EAP30/Vps36 fa 39.2 1.5E+02 0.0033 21.7 10.1 13 62-74 61-73 (223)
217 PTZ00373 60S Acidic ribosomal 39.0 1.1E+02 0.0024 20.0 5.5 53 45-102 6-58 (112)
218 PF10437 Lip_prot_lig_C: Bacte 35.9 98 0.0021 18.7 4.1 43 133-177 43-86 (86)
219 PF12631 GTPase_Cys_C: Catalyt 35.6 74 0.0016 18.7 3.4 45 116-160 24-72 (73)
220 PRK00819 RNA 2'-phosphotransfe 35.4 89 0.0019 22.2 4.3 35 126-160 28-62 (179)
221 KOG4070 Putative signal transd 33.5 54 0.0012 22.6 2.7 64 42-105 12-84 (180)
222 PLN00138 large subunit ribosom 33.4 1.4E+02 0.003 19.5 5.8 51 120-175 6-56 (113)
223 KOG3077 Uncharacterized conser 33.1 2.2E+02 0.0048 21.7 6.3 70 75-145 61-131 (260)
224 KOG4301 Beta-dystrobrevin [Cyt 32.6 83 0.0018 24.9 3.9 64 116-180 111-174 (434)
225 PRK14981 DNA-directed RNA poly 32.5 1E+02 0.0022 20.0 3.9 28 133-160 80-107 (112)
226 PF01885 PTS_2-RNA: RNA 2'-pho 32.0 97 0.0021 22.2 4.1 37 52-88 26-62 (186)
227 PF11829 DUF3349: Protein of u 32.0 1.4E+02 0.003 18.9 5.0 30 59-88 20-49 (96)
228 TIGR02787 codY_Gpos GTP-sensin 31.7 2.3E+02 0.0049 21.4 6.0 47 35-87 176-222 (251)
229 KOG1954 Endocytosis/signaling 31.7 74 0.0016 25.8 3.6 57 116-175 445-501 (532)
230 TIGR02675 tape_meas_nterm tape 31.6 63 0.0014 19.2 2.6 16 128-143 27-42 (75)
231 KOG4286 Dystrophin-like protei 31.6 3.9E+02 0.0084 24.0 8.5 102 75-177 417-531 (966)
232 cd00076 H4 Histone H4, one of 30.5 1.3E+02 0.0029 18.4 7.9 69 74-147 13-81 (85)
233 PF09373 PMBR: Pseudomurein-bi 30.5 63 0.0014 15.7 2.1 14 129-142 2-15 (33)
234 PF11020 DUF2610: Domain of un 30.5 1.1E+02 0.0024 18.6 3.4 36 145-180 43-78 (82)
235 TIGR01848 PHA_reg_PhaR polyhyd 30.4 1.5E+02 0.0034 19.1 5.1 50 49-98 10-69 (107)
236 PF13310 Virulence_RhuM: Virul 29.4 1.7E+02 0.0036 22.3 4.9 77 57-141 161-240 (260)
237 PF07128 DUF1380: Protein of u 29.3 1.9E+02 0.0041 19.7 5.2 48 132-179 27-79 (139)
238 KOG4629 Predicted mechanosensi 29.2 1.7E+02 0.0036 26.0 5.6 59 115-180 404-462 (714)
239 PF04695 Pex14_N: Peroxisomal 28.8 1.9E+02 0.004 19.5 6.4 49 114-164 3-51 (136)
240 cd05833 Ribosomal_P2 Ribosomal 28.5 1.7E+02 0.0037 19.0 5.5 53 46-103 5-57 (109)
241 COG1460 Uncharacterized protei 28.1 1.4E+02 0.0029 19.6 3.8 30 132-161 80-109 (114)
242 COG2036 HHT1 Histones H3 and H 28.0 1.6E+02 0.0034 18.4 6.3 82 58-147 3-87 (91)
243 PF08671 SinI: Anti-repressor 28.0 61 0.0013 15.6 1.7 11 132-142 17-27 (30)
244 TIGR00624 tag DNA-3-methyladen 27.7 1.9E+02 0.004 20.7 4.8 104 40-146 51-168 (179)
245 KOG2557 Uncharacterized conser 27.6 2.1E+02 0.0046 23.1 5.4 52 92-144 72-123 (427)
246 PTZ00015 histone H4; Provision 26.7 1.8E+02 0.0039 18.6 8.2 70 73-147 29-98 (102)
247 PRK00819 RNA 2'-phosphotransfe 26.6 1.6E+02 0.0034 21.0 4.3 43 53-98 28-70 (179)
248 PF09494 Slx4: Slx4 endonuclea 26.1 1.4E+02 0.003 17.1 3.6 27 132-158 25-55 (64)
249 cd00171 Sec7 Sec7 domain; Doma 25.8 2.5E+02 0.0054 20.0 12.6 37 125-161 143-181 (185)
250 PF04876 Tenui_NCP: Tenuivirus 25.0 2.4E+02 0.0052 19.5 7.2 55 80-143 85-139 (175)
251 PF07862 Nif11: Nitrogen fixat 24.8 1.2E+02 0.0026 16.0 2.9 21 133-153 28-48 (49)
252 PF14771 DUF4476: Domain of un 24.6 1.8E+02 0.0039 17.9 10.5 17 94-110 39-55 (95)
253 cd03035 ArsC_Yffb Arsenate Red 24.2 78 0.0017 20.1 2.3 52 129-183 33-87 (105)
254 cd08313 Death_TNFR1 Death doma 23.9 1.5E+02 0.0032 18.0 3.3 27 131-159 8-34 (80)
255 KOG0113 U1 small nuclear ribon 23.7 2.1E+02 0.0046 22.3 4.7 85 41-125 40-126 (335)
256 PF08044 DUF1707: Domain of un 23.6 1.3E+02 0.0028 16.6 2.7 30 128-157 20-49 (53)
257 COG1059 Thermostable 8-oxoguan 23.6 2.9E+02 0.0064 20.0 5.1 23 127-149 66-88 (210)
258 TIGR03573 WbuX N-acetyl sugar 23.5 2.3E+02 0.005 22.4 5.2 68 61-141 273-342 (343)
259 PF10281 Ish1: Putative stress 23.1 1.2E+02 0.0025 15.2 3.9 30 149-178 5-35 (38)
260 KOG4403 Cell surface glycoprot 22.8 50 0.0011 27.0 1.3 54 90-143 40-96 (575)
261 PF03250 Tropomodulin: Tropomo 22.5 2.6E+02 0.0056 19.3 4.5 24 32-55 20-43 (147)
262 PRK09430 djlA Dna-J like membr 22.4 2.2E+02 0.0049 21.6 4.8 10 92-101 69-78 (267)
263 PF01369 Sec7: Sec7 domain; I 22.3 3E+02 0.0064 19.6 7.7 37 125-161 148-186 (190)
264 TIGR00135 gatC glutamyl-tRNA(G 22.0 2E+02 0.0044 17.6 3.9 29 132-160 1-29 (93)
265 PRK04387 hypothetical protein; 21.9 2.1E+02 0.0046 17.8 3.7 54 35-88 10-64 (90)
266 PF07499 RuvA_C: RuvA, C-termi 21.9 1.4E+02 0.0031 15.7 4.2 38 135-176 4-41 (47)
267 cd04411 Ribosomal_P1_P2_L12p R 21.6 2.3E+02 0.0051 18.2 6.0 43 132-179 17-59 (105)
268 PF11848 DUF3368: Domain of un 21.6 1.5E+02 0.0032 15.8 3.9 32 129-160 15-47 (48)
269 KOG2623 Tyrosyl-tRNA synthetas 21.5 4.6E+02 0.01 21.5 7.5 82 62-144 304-388 (467)
270 PF09107 SelB-wing_3: Elongati 20.9 1.6E+02 0.0035 16.0 3.8 30 56-90 8-37 (50)
271 PF12825 DUF3818: Domain of un 20.8 4.4E+02 0.0095 21.0 9.3 23 31-53 167-189 (341)
272 COG5562 Phage envelope protein 20.8 76 0.0016 21.4 1.7 22 161-182 82-103 (137)
273 PF02037 SAP: SAP domain; Int 20.4 1.3E+02 0.0028 14.7 2.2 18 131-148 3-20 (35)
274 PF12238 MSA-2c: Merozoite sur 20.3 3.6E+02 0.0077 19.8 7.2 29 116-144 85-114 (205)
275 PF13829 DUF4191: Domain of un 20.3 2.5E+02 0.0054 20.9 4.4 41 121-161 157-197 (224)
276 TIGR01565 homeo_ZF_HD homeobox 20.3 1.8E+02 0.004 16.4 4.6 37 33-74 5-45 (58)
277 PF04157 EAP30: EAP30/Vps36 fa 20.2 3.6E+02 0.0078 19.8 6.9 113 42-160 97-214 (223)
278 smart00513 SAP Putative DNA-bi 20.1 1.3E+02 0.0028 14.6 2.6 18 131-148 3-20 (35)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.97 E-value=1e-28 Score=167.60 Aligned_cols=151 Identities=37% Similarity=0.648 Sum_probs=143.6
Q ss_pred CCCCCCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCC
Q 029304 30 SNNNNNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVD 109 (195)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~ 109 (195)
......+++++++++++.|..+|++++|.|+.++|..+++.+|...+..++.+++..++. +.+.|+|.+|+.++.....
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~ 86 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLK 86 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhc
Confidence 455779999999999999999999999999999999999999999999999999999998 8899999999999999887
Q ss_pred cHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcCC
Q 029304 110 SAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAGS 181 (195)
Q Consensus 110 ~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 181 (195)
.....+.+..+|+.||++++|+|+..+++.++..+|..+++++++.++..++.+++|.|+|++|+..+...+
T Consensus 87 ~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 87 RGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred cCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhccC
Confidence 777788999999999999999999999999999999999999999999999999999999999999877643
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.94 E-value=1.2e-25 Score=155.28 Aligned_cols=145 Identities=50% Similarity=0.839 Sum_probs=135.3
Q ss_pred CChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHH--
Q 029304 36 VIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEV-- 113 (195)
Q Consensus 36 l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~-- 113 (195)
++.+++..++.+|..+|.+++|+|+..++..+++.++..++..++..++..+|.+++|.|++.+|+.++.........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence 567889999999999999999999999999999999999999999999999999999999999999999875543332
Q ss_pred --HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcC
Q 029304 114 --MENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 114 --~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 180 (195)
...+.++|+.||.+++|+|+..||+.+|..+|.+++.+++..++..++.|.+|.|+|++|+.++...
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhcC
Confidence 3489999999999999999999999999999999999999999999999999999999999998753
No 3
>PTZ00183 centrin; Provisional
Probab=99.93 E-value=1.2e-23 Score=146.50 Aligned_cols=149 Identities=34% Similarity=0.601 Sum_probs=136.5
Q ss_pred CCCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHH
Q 029304 33 NNNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAE 112 (195)
Q Consensus 33 ~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~ 112 (195)
...+++.+++++..+|..+|.+++|.|+..+|..++..++...+...+..++..+|.+++|.|+|.+|+..+........
T Consensus 8 ~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 87 (158)
T PTZ00183 8 RPGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERD 87 (158)
T ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCC
Confidence 45688999999999999999999999999999999999988889999999999999999999999999998775433333
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcCC
Q 029304 113 VMENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAGS 181 (195)
Q Consensus 113 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 181 (195)
....+..+|+.+|.+++|.|+.+||..++...|..+++.++..++..++.+++|.|++++|..++...+
T Consensus 88 ~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 156 (158)
T PTZ00183 88 PREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKKTN 156 (158)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhccc
Confidence 456899999999999999999999999999999999999999999999999999999999999998754
No 4
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3.8e-23 Score=137.61 Aligned_cols=151 Identities=30% Similarity=0.544 Sum_probs=141.1
Q ss_pred CCCCCCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCC
Q 029304 30 SNNNNNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVD 109 (195)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~ 109 (195)
..+.+.+++++.+.++..|..+|.++.|+|+.+++..+++++|+.....++..++..+|+++.|.|+|++|+..+...+.
T Consensus 21 ~~~~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~ 100 (172)
T KOG0028|consen 21 ASPKSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLG 100 (172)
T ss_pred CCCCccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHh
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999877665
Q ss_pred cHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcC
Q 029304 110 SAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 110 ~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 180 (195)
.....+.+..+|+.+|.+++|.|+..+|+.+...+|.+++++++.+++..++.+.+|.|+-++|...+...
T Consensus 101 e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 101 ERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred ccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 55567799999999999999999999999999999999999999999999999999999999999998764
No 5
>PTZ00184 calmodulin; Provisional
Probab=99.91 E-value=7.3e-23 Score=141.10 Aligned_cols=146 Identities=44% Similarity=0.787 Sum_probs=134.1
Q ss_pred CCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHH
Q 029304 34 NNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEV 113 (195)
Q Consensus 34 ~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~ 113 (195)
..+++++++.++..|..+|.+++|.|+.++|..++..++.......+..+++.++.+++|.|+|++|+..+.........
T Consensus 3 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~ 82 (149)
T PTZ00184 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDS 82 (149)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcH
Confidence 45789999999999999999999999999999999999988889999999999999999999999999988865443344
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHc
Q 029304 114 MENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTA 179 (195)
Q Consensus 114 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 179 (195)
...+..+|+.+|.+++|.|+.++|+.++..+|..++..++..++..+|.+++|.|++++|..++..
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 568899999999999999999999999999999999999999999999999999999999998754
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.90 E-value=4.7e-22 Score=131.46 Aligned_cols=150 Identities=31% Similarity=0.531 Sum_probs=140.3
Q ss_pred CCCCCCCCCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 27 NSSSNNNNNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
..+++.+..++..+|+++++.|...|.|.+|.|..++++..+.++|...+++++..++... .|.|+|.-|+.++..
T Consensus 17 rasSnvFamf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGe 92 (171)
T KOG0031|consen 17 RASSNVFAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGE 92 (171)
T ss_pred cccchHHHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHH
Confidence 4467788899999999999999999999999999999999999999999999999999865 688999999999988
Q ss_pred cCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcC
Q 029304 107 GVDSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 107 ~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 180 (195)
.++.-.-++.+..+|+.||.+++|.|..+.++.+|...|.++++++++.++..+-.+..|.|+|..|+..+..-
T Consensus 93 kL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ithG 166 (171)
T KOG0031|consen 93 KLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITHG 166 (171)
T ss_pred HhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHcc
Confidence 77776668899999999999999999999999999999999999999999999999999999999999998843
No 7
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.83 E-value=1.2e-19 Score=118.16 Aligned_cols=144 Identities=30% Similarity=0.564 Sum_probs=127.9
Q ss_pred CCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccC--CCCceeHHHHHHHHhhcCCcH-
Q 029304 35 NVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDAD--GDGFVDFDEFVELNTKGVDSA- 111 (195)
Q Consensus 35 ~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~--~~~~i~~~eF~~~~~~~~~~~- 111 (195)
.+++++..+++++|..||..++|+|+..+...+|+.+|.+++..++.+.+..+.++ +-.+|+|++|+-+++...+..
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~ 83 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKD 83 (152)
T ss_pred ccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccc
Confidence 45678889999999999999999999999999999999999999999999998776 457899999999998754432
Q ss_pred -HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHc
Q 029304 112 -EVMENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTA 179 (195)
Q Consensus 112 -~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 179 (195)
-..+.+.+-++.||++++|.|...|+|++|.++|..+++++++.++.-.. |.+|-|+|+.|+..+.+
T Consensus 84 q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 84 QGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHIMS 151 (152)
T ss_pred cCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHHhc
Confidence 12357788899999999999999999999999999999999999998875 78899999999988754
No 8
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.83 E-value=2.3e-18 Score=120.84 Aligned_cols=135 Identities=29% Similarity=0.416 Sum_probs=124.2
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHH
Q 029304 41 VHELRQVFNKFDANGDGKISASELGSILTSL-GHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKD 119 (195)
Q Consensus 41 ~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~ 119 (195)
-..+...|...|++..|.|+.+|+..+|... .-.++.+.++-++..+|.+..|.|.++||..++.. ...|+.
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~-------i~~Wr~ 128 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKY-------INQWRN 128 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHH-------HHHHHH
Confidence 3567888999999999999999999999855 44688999999999999999999999999999887 679999
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcCCC
Q 029304 120 AFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAGSR 182 (195)
Q Consensus 120 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~ 182 (195)
+|+.+|+|++|.|+..||+++|..+|..+++.-.+.+++.++....|.|.+++|+.++..-..
T Consensus 129 vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~ 191 (221)
T KOG0037|consen 129 VFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQR 191 (221)
T ss_pred HHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999877999999999998776543
No 9
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.83 E-value=6.8e-19 Score=123.76 Aligned_cols=146 Identities=36% Similarity=0.556 Sum_probs=125.0
Q ss_pred CCCChHhHHHHHHHhhhhcCC-CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCc-eeHHHHHHHHhhcCCcH
Q 029304 34 NNVIIPDVHELRQVFNKFDAN-GDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGF-VDFDEFVELNTKGVDSA 111 (195)
Q Consensus 34 ~~l~~~~~~~~~~~F~~~d~~-~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~-i~~~eF~~~~~~~~~~~ 111 (195)
..++..|+..+...|..++.+ +.|.++.++|..+.. + .......+++..++..++|. |+|++|+..+.......
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~-~---~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~ 100 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPE-L---ALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKA 100 (187)
T ss_pred cccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHH-H---hcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCc
Confidence 568899999999999999999 999999999999983 2 23345678888888888887 99999999999988777
Q ss_pred HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCC--HHH----HHHHHHhhcCCCCcceeHHHHHHHHHcCCCc
Q 029304 112 EVMENLKDAFSVYDIDGNGSITAEELHQVLRSLG-DDCT--LAE----CRRMIRGVDCDGDGTIDFEEFKVMMTAGSRY 183 (195)
Q Consensus 112 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~--~~~----~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~ 183 (195)
....++.-+|+.||.+++|+|+.+|+.+++..+- ...+ ++. ++.++..+|.++||.|+++||+..+...|..
T Consensus 101 ~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~ 179 (187)
T KOG0034|consen 101 SKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPDL 179 (187)
T ss_pred cHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCccH
Confidence 7677999999999999999999999999999874 3444 444 4556888899999999999999999988643
No 10
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.77 E-value=2.9e-17 Score=124.89 Aligned_cols=143 Identities=24% Similarity=0.395 Sum_probs=132.4
Q ss_pred CCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHH
Q 029304 34 NNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHA-ATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAE 112 (195)
Q Consensus 34 ~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~ 112 (195)
....++...+++.+|+.+|.+++|.++.+++.+.+..+... .....+..+++.+|.+.+|+++|++|...+..
T Consensus 6 ~~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~------ 79 (463)
T KOG0036|consen 6 RETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN------ 79 (463)
T ss_pred cCCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH------
Confidence 44566677799999999999999999999999999999877 77888999999999999999999999998876
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcCCC
Q 029304 113 VMENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAGSR 182 (195)
Q Consensus 113 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~ 182 (195)
.+..+.++|...|.++||.|+..|+.+.|+.+|.++++++++.+++..|.++.+.|+++||..++...+.
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~ 149 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPE 149 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCCh
Confidence 3668999999999999999999999999999999999999999999999999999999999999888774
No 11
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.76 E-value=3.2e-17 Score=115.43 Aligned_cols=147 Identities=24% Similarity=0.400 Sum_probs=120.9
Q ss_pred CCCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcH
Q 029304 33 NNNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGH-AATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSA 111 (195)
Q Consensus 33 ~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~ 111 (195)
...+++.++..+.+-|..- -++|.++.++|+.++..+.. .-+...+..+|+.+|.+++|.|+|.||+..+.... ++
T Consensus 20 ~t~f~~~ei~~~Yr~Fk~~--cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~-rG 96 (193)
T KOG0044|consen 20 QTKFSKKEIQQWYRGFKNE--CPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTS-RG 96 (193)
T ss_pred hcCCCHHHHHHHHHHhccc--CCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHc-CC
Confidence 4567777776666666552 36899999999999998764 56677899999999999999999999999999844 44
Q ss_pred HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh----CC-------CCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcC
Q 029304 112 EVMENLKDAFSVYDIDGNGSITAEELHQVLRSL----GD-------DCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 112 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~-------~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 180 (195)
..++.+.-+|+.||.+++|+|+.+|+..++..+ |. .-....+..+|..+|.|+||.||+++|......-
T Consensus 97 t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d 176 (193)
T KOG0044|consen 97 TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKAD 176 (193)
T ss_pred cHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhC
Confidence 557788899999999999999999999999875 21 1234568899999999999999999999987665
Q ss_pred CC
Q 029304 181 SR 182 (195)
Q Consensus 181 ~~ 182 (195)
+.
T Consensus 177 ~~ 178 (193)
T KOG0044|consen 177 PS 178 (193)
T ss_pred HH
Confidence 43
No 12
>PLN02964 phosphatidylserine decarboxylase
Probab=99.50 E-value=5e-13 Score=109.77 Aligned_cols=122 Identities=23% Similarity=0.390 Sum_probs=102.6
Q ss_pred CCCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcC-CCCCHHH---HHHHHHHHccCCCCceeHHHHHHHHhhcC
Q 029304 33 NNNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLG-HAATEEE---LQKMVREIDADGDGFVDFDEFVELNTKGV 108 (195)
Q Consensus 33 ~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~---~~~l~~~~d~~~~~~i~~~eF~~~~~~~~ 108 (195)
...++..|++++++.|..+|++++|.+ +..++..++ ...+..+ +..+|..+|.+++|.|+++||+.++...
T Consensus 134 ~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l- 208 (644)
T PLN02964 134 LFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF- 208 (644)
T ss_pred HhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh-
Confidence 357888999999999999999999997 888899898 5777776 8999999999999999999999998863
Q ss_pred CcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-------------hCCCCCH-HHHHHHHHh
Q 029304 109 DSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRS-------------LGDDCTL-AECRRMIRG 159 (195)
Q Consensus 109 ~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-------------~~~~~~~-~~~~~~~~~ 159 (195)
.....++.+..+|+.+|.+++|.|+.+||+.++.. +|..+.. ++++.+.+.
T Consensus 209 g~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH~ 273 (644)
T PLN02964 209 GNLVAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMIHM 273 (644)
T ss_pred ccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHHHH
Confidence 33334568999999999999999999999999988 5555554 555665543
No 13
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.45 E-value=1.8e-12 Score=91.46 Aligned_cols=128 Identities=20% Similarity=0.265 Sum_probs=94.9
Q ss_pred hHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHH
Q 029304 38 IPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENL 117 (195)
Q Consensus 38 ~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~ 117 (195)
...++.++-+...+|.+.+|+|+++||..+.+ ....++.+|+.+|.+++|.|+..|+...+...=.... .+.+
T Consensus 90 ~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~------~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Ls-pq~~ 162 (221)
T KOG0037|consen 90 PFSIETCRLMISMFDRDNSGTIGFKEFKALWK------YINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLS-PQFY 162 (221)
T ss_pred CCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH------HHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCC-HHHH
Confidence 34456667777777888888888888888876 3456778888888888888888888888776333322 4577
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcc--eeHHHHHHHHH
Q 029304 118 KDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGT--IDFEEFKVMMT 178 (195)
Q Consensus 118 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~--i~~~eF~~~l~ 178 (195)
..+.+.||..+.|.|.+++|.+.+..+ ..+-+.|+..|.+..|. |+|++|+.+..
T Consensus 163 ~~lv~kyd~~~~g~i~FD~FI~ccv~L------~~lt~~Fr~~D~~q~G~i~~~y~dfl~~t~ 219 (221)
T KOG0037|consen 163 NLLVRKYDRFGGGRIDFDDFIQCCVVL------QRLTEAFRRRDTAQQGSITISYDDFLQMTM 219 (221)
T ss_pred HHHHHHhccccCCceeHHHHHHHHHHH------HHHHHHHHHhccccceeEEEeHHHHHHHhh
Confidence 778888887778888888888888776 45667888888887774 77888877643
No 14
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=2.2e-12 Score=95.99 Aligned_cols=137 Identities=22% Similarity=0.350 Sum_probs=110.6
Q ss_pred HhHHHHHHHhhhhcCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcH---HH-
Q 029304 39 PDVHELRQVFNKFDANGDGKISASELGSILTS-LGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSA---EV- 113 (195)
Q Consensus 39 ~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~---~~- 113 (195)
..+.+-++.|+..|.|++|.++.+||..+|.- =.-.+..-.+..-+...|+|++|.|+++||+.-+...-... ..
T Consensus 160 km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv 239 (325)
T KOG4223|consen 160 KMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWV 239 (325)
T ss_pred HHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccc
Confidence 44567789999999999999999999999852 13345556678888889999999999999998766533211 11
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHH
Q 029304 114 MENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKV 175 (195)
Q Consensus 114 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 175 (195)
...-...+...|+|+||+++.+|++..+..-+......+...++...|.|+||++|++|.+.
T Consensus 240 ~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 240 LTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred cccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 12344678889999999999999998887767777788999999999999999999999775
No 15
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.39 E-value=1.9e-12 Score=80.64 Aligned_cols=67 Identities=24% Similarity=0.372 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhcC-CCCCcccHHHHHHHHHH-hCCCCCH-HHHHHHHHhhcCCCCcceeHHHHHHHHHcC
Q 029304 114 MENLKDAFSVYDI-DGNGSITAEELHQVLRS-LGDDCTL-AECRRMIRGVDCDGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 114 ~~~~~~~f~~~D~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 180 (195)
...+..+|+.||+ +++|+|+..||+.++.. +|..+++ .+++.+++.+|.|+||.|+|+||..++...
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 3478899999999 99999999999999999 8877888 899999999999999999999999988764
No 16
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.37 E-value=3.9e-12 Score=75.32 Aligned_cols=62 Identities=44% Similarity=0.748 Sum_probs=53.9
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHH----HHHHHHHhhcCCCCcceeHHHHHHHH
Q 029304 116 NLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLA----ECRRMIRGVDCDGDGTIDFEEFKVMM 177 (195)
Q Consensus 116 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~----~~~~~~~~~d~~~~g~i~~~eF~~~l 177 (195)
.+..+|+.+|.+++|.|+.+||+.++..++...++. .++.+|..+|.+++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 467899999999999999999999999998665554 45556999999999999999999875
No 17
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.36 E-value=3e-11 Score=79.84 Aligned_cols=145 Identities=24% Similarity=0.390 Sum_probs=109.2
Q ss_pred CCChHhHHHHHHHhhhhcCCC-----------CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHH
Q 029304 35 NVIIPDVHELRQVFNKFDANG-----------DGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVEL 103 (195)
Q Consensus 35 ~l~~~~~~~~~~~F~~~d~~~-----------~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~ 103 (195)
-++..+|-++...|..+.++- .-+++.+.+.+.-. +. ....-+++-..+..+|.|.++|++|+.+
T Consensus 21 FFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMPE-Lk---enpfk~ri~e~FSeDG~GnlsfddFlDm 96 (189)
T KOG0038|consen 21 FFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMPE-LK---ENPFKRRICEVFSEDGRGNLSFDDFLDM 96 (189)
T ss_pred cccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhChh-hh---cChHHHHHHHHhccCCCCcccHHHHHHH
Confidence 466777888888888876641 22455555544321 11 1223456667778899999999999999
Q ss_pred HhhcCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHH----HHHHhhcCCCCcceeHHHHHHHHH
Q 029304 104 NTKGVDSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSLG-DDCTLAECR----RMIRGVDCDGDGTIDFEEFKVMMT 178 (195)
Q Consensus 104 ~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~----~~~~~~d~~~~g~i~~~eF~~~l~ 178 (195)
+..........-.+.-+|+.+|-++|+.|...++...+..+- ..++++++. .++...|.|+||++++.+|..++.
T Consensus 97 fSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 97 FSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred HHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 887655555455788899999999999999999999999874 567887764 456677999999999999999998
Q ss_pred cCCCc
Q 029304 179 AGSRY 183 (195)
Q Consensus 179 ~~~~~ 183 (195)
..+.+
T Consensus 177 raPDF 181 (189)
T KOG0038|consen 177 RAPDF 181 (189)
T ss_pred hCcch
Confidence 88764
No 18
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.7e-11 Score=91.30 Aligned_cols=148 Identities=24% Similarity=0.374 Sum_probs=116.6
Q ss_pred CCChHhHH-HHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcC-----
Q 029304 35 NVIIPDVH-ELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGV----- 108 (195)
Q Consensus 35 ~l~~~~~~-~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~----- 108 (195)
.+++++.+ ++..++...|.+++|.|+..+++.++.....+--..+..+-|..++.+.+|.|+|++++..+....
T Consensus 69 ~l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~ 148 (325)
T KOG4223|consen 69 QLTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDE 148 (325)
T ss_pred hhCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccc
Confidence 45555544 889999999999999999999999987655555567788888889999999999999998766421
Q ss_pred -C----c---HHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHc
Q 029304 109 -D----S---AEVMENLKDAFSVYDIDGNGSITAEELHQVLRSLGD-DCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTA 179 (195)
Q Consensus 109 -~----~---~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 179 (195)
. . ......-.+-|+..|.|++|.++++||..+|..-.. ...+-.+.+-+..+|.|+||.|+++||+.=+..
T Consensus 149 ~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 149 FPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred cccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 0 0 011235667899999999999999999999865432 233445777889999999999999999998877
Q ss_pred CCC
Q 029304 180 GSR 182 (195)
Q Consensus 180 ~~~ 182 (195)
...
T Consensus 229 ~~~ 231 (325)
T KOG4223|consen 229 HEG 231 (325)
T ss_pred ccC
Confidence 664
No 19
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.33 E-value=8.6e-12 Score=88.07 Aligned_cols=102 Identities=27% Similarity=0.385 Sum_probs=87.1
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCC----------cH
Q 029304 42 HELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVD----------SA 111 (195)
Q Consensus 42 ~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~----------~~ 111 (195)
.-...+|..+|.+++|.|++.||..++..+...-..+-+...|+.+|.+++|.|++.+++.++..... ..
T Consensus 64 ~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~ 143 (193)
T KOG0044|consen 64 KYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEE 143 (193)
T ss_pred HHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccc
Confidence 34577899999999999999999999988877777888889999999999999999999998765421 12
Q ss_pred HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 029304 112 EVMENLKDAFSVYDIDGNGSITAEELHQVLRS 143 (195)
Q Consensus 112 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 143 (195)
..++....+|+.+|.|+||.||.+||...+.+
T Consensus 144 ~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 144 TPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred cHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 23568999999999999999999999988764
No 20
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.31 E-value=2.9e-11 Score=83.47 Aligned_cols=105 Identities=30% Similarity=0.452 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCC-----HH
Q 029304 77 EEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCT-----LA 151 (195)
Q Consensus 77 ~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~-----~~ 151 (195)
..++..+|..+|.+++|.|+-.++..++... .....+..+..++..+|.+++|.|++++|..++...+...+ ..
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~l-g~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~ 85 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSL-GQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSE 85 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHH
Confidence 4578899999999999999999999999884 44445779999999999999999999999999998764433 45
Q ss_pred HHHHHHHhhcCCCCcceeHHHHHHHHHcCCC
Q 029304 152 ECRRMIRGVDCDGDGTIDFEEFKVMMTAGSR 182 (195)
Q Consensus 152 ~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~ 182 (195)
++.+.|+.+|.+++|.|+..++..++...-.
T Consensus 86 el~eaF~~fD~d~~G~Is~~el~~~l~~lg~ 116 (151)
T KOG0027|consen 86 ELKEAFRVFDKDGDGFISASELKKVLTSLGE 116 (151)
T ss_pred HHHHHHHHHccCCCCcCcHHHHHHHHHHhCC
Confidence 9999999999999999999999999887543
No 21
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.31 E-value=1.7e-11 Score=72.56 Aligned_cols=62 Identities=44% Similarity=0.811 Sum_probs=50.5
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHH----HHHHHHHHHccCCCCceeHHHHHHHH
Q 029304 43 ELRQVFNKFDANGDGKISASELGSILTSLGHAATEE----ELQKMVREIDADGDGFVDFDEFVELN 104 (195)
Q Consensus 43 ~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~----~~~~l~~~~d~~~~~~i~~~eF~~~~ 104 (195)
+++.+|..+|.+++|+|+.+||..++..++...+.. .+..+|+.+|.+++|.|+|+||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478899999999999999999999999988766543 44555888888888888888887654
No 22
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.28 E-value=2.7e-11 Score=75.55 Aligned_cols=66 Identities=26% Similarity=0.489 Sum_probs=60.8
Q ss_pred HHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcC
Q 029304 115 ENLKDAFSVYD-IDGNG-SITAEELHQVLRS-----LGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 115 ~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 180 (195)
..+..+|+.|| ++++| .|+.+||+.+|+. +|...++.+++.++..+|.|++|.|+|++|+.++...
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 47889999998 79999 5999999999999 8888899999999999999999999999999987653
No 23
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.28 E-value=8.6e-11 Score=90.84 Aligned_cols=140 Identities=23% Similarity=0.351 Sum_probs=110.3
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcH---------
Q 029304 42 HELRQVFNKFDANGDGKISASELGSILTSL-GHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSA--------- 111 (195)
Q Consensus 42 ~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~--------- 111 (195)
..+...|+.+|....|+|+...+..++.+. ++.++.--+.-- ....+.+|.+.|...+..+.......
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~k--la~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPK--LANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhh--ccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 356788999999999999999999999864 666665333322 23455678999998887665422111
Q ss_pred --HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcCCCc
Q 029304 112 --EVMENLKDAFSVYDIDGNGSITAEELHQVLRSL----GDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAGSRY 183 (195)
Q Consensus 112 --~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~ 183 (195)
.....+..+|+.+|.|++|.|+.+||++++.-+ ...++++++.++.+.+|.|+||.|++.||...++-....
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr~ 619 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDRR 619 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcch
Confidence 112367889999999999999999999999865 467899999999999999999999999999998766553
No 24
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.28 E-value=2.5e-11 Score=75.63 Aligned_cols=68 Identities=29% Similarity=0.491 Sum_probs=62.5
Q ss_pred HhHHHHHHHhhhhcC-CCCCcccHHHHHHHHHH-cCCCCCH-HHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 39 PDVHELRQVFNKFDA-NGDGKISASELGSILTS-LGHAATE-EELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 39 ~~~~~~~~~F~~~d~-~~~g~l~~~e~~~~l~~-~~~~~~~-~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
.-+..+..+|..||. +++|+|+..+|+.++.. ++-.++. .++..+++.+|.+++|.|+|+||+.++..
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 456789999999999 99999999999999998 8877777 89999999999999999999999998776
No 25
>PTZ00183 centrin; Provisional
Probab=99.27 E-value=1.1e-10 Score=80.95 Aligned_cols=102 Identities=24% Similarity=0.305 Sum_probs=85.5
Q ss_pred HHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHH
Q 029304 78 EELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSL-GDDCTLAECRRM 156 (195)
Q Consensus 78 ~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~ 156 (195)
.++..+|..+|.+++|.|++.+|..++... ........+..+|..+|.+++|.|+++||..++... ........+..+
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~ 95 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSL-GFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKA 95 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 457788899999999999999999988753 222234578999999999999999999999988764 344566789999
Q ss_pred HHhhcCCCCcceeHHHHHHHHHcC
Q 029304 157 IRGVDCDGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 157 ~~~~d~~~~g~i~~~eF~~~l~~~ 180 (195)
|+.+|.+++|.|+.++|..++...
T Consensus 96 F~~~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 96 FRLFDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred HHHhCCCCCCcCcHHHHHHHHHHh
Confidence 999999999999999999998754
No 26
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.23 E-value=1.1e-10 Score=74.38 Aligned_cols=70 Identities=29% Similarity=0.384 Sum_probs=64.5
Q ss_pred CCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 35 NVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 35 ~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
.++++++..++.+|..+|.+++|.|+.+++..++..++ ++..++..++..++.+++|.|+|++|+.++..
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 46889999999999999999999999999999999865 68889999999999999999999999988775
No 27
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.21 E-value=3.6e-10 Score=77.33 Aligned_cols=102 Identities=22% Similarity=0.302 Sum_probs=87.7
Q ss_pred HHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHH
Q 029304 78 EELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSLG-DDCTLAECRRM 156 (195)
Q Consensus 78 ~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~ 156 (195)
+++...|..+|.+++|.|++.++..++.. +........+.+++..+|. +.|.|++.+|..+|...- ..-+++++...
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~-lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~a 97 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRS-LGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREA 97 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHH-cCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34566677789999999999999999984 5555557799999999999 999999999999998765 45568999999
Q ss_pred HHhhcCCCCcceeHHHHHHHHHcCC
Q 029304 157 IRGVDCDGDGTIDFEEFKVMMTAGS 181 (195)
Q Consensus 157 ~~~~d~~~~g~i~~~eF~~~l~~~~ 181 (195)
|+.+|.|++|.|+..++..++....
T Consensus 98 F~~fD~d~dG~Is~~eL~~vl~~lg 122 (160)
T COG5126 98 FKLFDKDHDGYISIGELRRVLKSLG 122 (160)
T ss_pred HHHhCCCCCceecHHHHHHHHHhhc
Confidence 9999999999999999999988543
No 28
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.21 E-value=1.6e-10 Score=72.11 Aligned_cols=67 Identities=31% Similarity=0.592 Sum_probs=61.6
Q ss_pred hHHHHHHHhhhhc-CCCCC-cccHHHHHHHHHH-----cCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 40 DVHELRQVFNKFD-ANGDG-KISASELGSILTS-----LGHAATEEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 40 ~~~~~~~~F~~~d-~~~~g-~l~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
-+..++.+|..+| .+++| .|+.++|+.+|+. ++...+..++..+++.+|.+++|.|+|++|+.++..
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4568999999998 79999 5999999999998 888889999999999999999999999999988765
No 29
>PTZ00184 calmodulin; Provisional
Probab=99.20 E-value=3.9e-10 Score=77.36 Aligned_cols=102 Identities=25% Similarity=0.333 Sum_probs=84.2
Q ss_pred HHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHH
Q 029304 78 EELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSLG-DDCTLAECRRM 156 (195)
Q Consensus 78 ~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~ 156 (195)
..+...|..+|.+++|.|++++|..++...-. ......+..+|+.+|.+++|.|++++|..++.... .......+..+
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~ 89 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEA 89 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCC-CCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHH
Confidence 34667888899999999999999998865322 22245889999999999999999999999987652 33455678999
Q ss_pred HHhhcCCCCcceeHHHHHHHHHcC
Q 029304 157 IRGVDCDGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 157 ~~~~d~~~~g~i~~~eF~~~l~~~ 180 (195)
|..+|.+++|.|+.++|..++...
T Consensus 90 F~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 90 FKVFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred HHhhCCCCCCeEeHHHHHHHHHHH
Confidence 999999999999999999988664
No 30
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.20 E-value=1.4e-10 Score=72.29 Aligned_cols=66 Identities=21% Similarity=0.448 Sum_probs=59.4
Q ss_pred HHHHHHHHhhcC-CC-CCcccHHHHHHHHHH---hCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcC
Q 029304 115 ENLKDAFSVYDI-DG-NGSITAEELHQVLRS---LGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 115 ~~~~~~f~~~D~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 180 (195)
..+..+|..||. +| +|+|+.+||+.++.. +|..++++++.++++.+|.|++|.|+|++|+.++...
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 467789999998 67 899999999999973 6888999999999999999999999999999988753
No 31
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.16 E-value=6.6e-10 Score=78.48 Aligned_cols=113 Identities=23% Similarity=0.461 Sum_probs=93.4
Q ss_pred CCCCCChHhHHHH---------HHHhhhhcCCCCCc-ccHHHHHHHHHHcCCCCCHH-HHHHHHHHHccCCCCceeHHHH
Q 029304 32 NNNNVIIPDVHEL---------RQVFNKFDANGDGK-ISASELGSILTSLGHAATEE-ELQKMVREIDADGDGFVDFDEF 100 (195)
Q Consensus 32 ~~~~l~~~~~~~~---------~~~F~~~d~~~~g~-l~~~e~~~~l~~~~~~~~~~-~~~~l~~~~d~~~~~~i~~~eF 100 (195)
....++.++...+ .+++..++.+++|. |++++|...+.-+....... .+.-.|+.||.+++|.|+.+++
T Consensus 47 ~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel 126 (187)
T KOG0034|consen 47 GDGYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREEL 126 (187)
T ss_pred ccCccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHH
Confidence 4455666666654 56788899998888 99999999999876665555 8999999999999999999999
Q ss_pred HHHHhhcCCc------HHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 029304 101 VELNTKGVDS------AEVMENLKDAFSVYDIDGNGSITAEELHQVLRSL 144 (195)
Q Consensus 101 ~~~~~~~~~~------~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 144 (195)
..++...... ......+..+|..+|.++||.|+++||+.++...
T Consensus 127 ~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 127 KQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 9998876552 3334678889999999999999999999998754
No 32
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.16 E-value=1.7e-10 Score=65.35 Aligned_cols=52 Identities=42% Similarity=0.666 Sum_probs=48.9
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHhhcCCCCcceeHHHHHHHHHc
Q 029304 128 GNGSITAEELHQVLRSLGDD-CTLAECRRMIRGVDCDGDGTIDFEEFKVMMTA 179 (195)
Q Consensus 128 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 179 (195)
++|.|+.++|+.++..+|.. +++++++.+|..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888999 99999999999999999999999999999864
No 33
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.16 E-value=2.9e-10 Score=71.81 Aligned_cols=67 Identities=28% Similarity=0.570 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-hC----CCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcC
Q 029304 114 MENLKDAFSVYD-IDGNG-SITAEELHQVLRS-LG----DDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 114 ~~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 180 (195)
.+.+.++|+.|| .+++| .|+..||+.+|+. +| ...++.+++.++..+|.+++|.|+|++|+.++...
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 457999999997 99999 5999999999986 44 34688999999999999999999999999988754
No 34
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.16 E-value=2.3e-10 Score=72.54 Aligned_cols=69 Identities=26% Similarity=0.487 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhcC-CC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcCCC
Q 029304 114 MENLKDAFSVYDI-DG-NGSITAEELHQVLRS-----LGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAGSR 182 (195)
Q Consensus 114 ~~~~~~~f~~~D~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~ 182 (195)
...+..+|..+|. ++ +|.|+..|++.++.. +|...++.+++.++..+|.+++|.|+|++|+.++.....
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 3478899999997 87 699999999999986 466788999999999999999999999999998876543
No 35
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.14 E-value=3.2e-10 Score=71.62 Aligned_cols=66 Identities=23% Similarity=0.442 Sum_probs=56.8
Q ss_pred HHHHHHHHhhc-CCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcC
Q 029304 115 ENLKDAFSVYD-IDGNG-SITAEELHQVLRSL-----GDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 115 ~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 180 (195)
..+..+|+.|| .+++| +|+..||+.++... +...++.++..++..+|.|++|.|+|+||+.++...
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 46788899999 68998 59999999999773 334577899999999999999999999999988654
No 36
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.13 E-value=6.2e-10 Score=69.40 Aligned_cols=69 Identities=23% Similarity=0.487 Sum_probs=61.8
Q ss_pred hHhHHHHHHHhhhhcC-CC-CCcccHHHHHHHHHH---cCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 38 IPDVHELRQVFNKFDA-NG-DGKISASELGSILTS---LGHAATEEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 38 ~~~~~~~~~~F~~~d~-~~-~g~l~~~e~~~~l~~---~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
+..+..+..+|..||. ++ +|+|+.+||+.++.. +|..++.+++..+++.+|.+++|.|+|++|+.++..
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 4567788999999998 66 899999999999963 688899999999999999999999999999988765
No 37
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.11 E-value=8e-10 Score=70.33 Aligned_cols=68 Identities=22% Similarity=0.323 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcCCC
Q 029304 113 VMENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAGSR 182 (195)
Q Consensus 113 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~ 182 (195)
....+..+|..+|.+++|.|+.++++.+++..| +++.++..++..++.+.+|.|++++|+.++.....
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHH
Confidence 456899999999999999999999999999865 68889999999999999999999999998776544
No 38
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.10 E-value=4.6e-10 Score=66.45 Aligned_cols=60 Identities=30% Similarity=0.441 Sum_probs=54.8
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHc
Q 029304 118 KDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTA 179 (195)
Q Consensus 118 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 179 (195)
+.+|+.+|.+++|.|+.+|++.++...| ++.+++..++..++.+++|.|++++|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 4689999999999999999999999887 48889999999999999999999999998754
No 39
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.09 E-value=7.4e-10 Score=69.34 Aligned_cols=69 Identities=29% Similarity=0.526 Sum_probs=61.4
Q ss_pred hHhHHHHHHHhhhhcC--CCCCcccHHHHHHHHHH-cCCC----CCHHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 38 IPDVHELRQVFNKFDA--NGDGKISASELGSILTS-LGHA----ATEEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 38 ~~~~~~~~~~F~~~d~--~~~g~l~~~e~~~~l~~-~~~~----~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
++++..++.+|..+|. +++|.|+.+++..++.. ++.. .+..++..++..++.+++|.|+|++|+.++..
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 5778899999999999 89999999999999975 4543 35899999999999999999999999998876
No 40
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.08 E-value=1.2e-09 Score=68.99 Aligned_cols=68 Identities=29% Similarity=0.524 Sum_probs=58.5
Q ss_pred HhHHHHHHHhhhhc-CCCCC-cccHHHHHHHHHH-c----CCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 39 PDVHELRQVFNKFD-ANGDG-KISASELGSILTS-L----GHAATEEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 39 ~~~~~~~~~F~~~d-~~~~g-~l~~~e~~~~l~~-~----~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
.-+..+..+|..|| .+++| +|+..||+.++.. + ....+..++..+++.+|.+++|.|+|++|+.++..
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 44668899999999 78998 5999999999976 2 33457789999999999999999999999998876
No 41
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=3.1e-09 Score=71.55 Aligned_cols=104 Identities=23% Similarity=0.319 Sum_probs=87.8
Q ss_pred HHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHH
Q 029304 78 EELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRS-LGDDCTLAECRRM 156 (195)
Q Consensus 78 ~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~ 156 (195)
+++...|..++++++|.|+++++...+.. .......+.+..+..-+|+++.|.|++++|+.++.. ++..-+.+++...
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmra-lGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~a 111 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRA-LGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKA 111 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHH-cCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHH
Confidence 56888899999999999999999666555 333334568888999999999999999999999765 4666699999999
Q ss_pred HHhhcCCCCcceeHHHHHHHHHcCCC
Q 029304 157 IRGVDCDGDGTIDFEEFKVMMTAGSR 182 (195)
Q Consensus 157 ~~~~d~~~~g~i~~~eF~~~l~~~~~ 182 (195)
|+.+|.|++|.|++.+|+.....-..
T Consensus 112 frl~D~D~~Gkis~~~lkrvakeLge 137 (172)
T KOG0028|consen 112 FRLFDDDKTGKISQRNLKRVAKELGE 137 (172)
T ss_pred HHcccccCCCCcCHHHHHHHHHHhCc
Confidence 99999999999999999998766543
No 42
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.07 E-value=1.1e-09 Score=68.56 Aligned_cols=67 Identities=24% Similarity=0.490 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhcC--CCCCcccHHHHHHHHHH-hCCC----CCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcC
Q 029304 114 MENLKDAFSVYDI--DGNGSITAEELHQVLRS-LGDD----CTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 114 ~~~~~~~f~~~D~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 180 (195)
...+..+|..+|. +++|.|+.++|+.++.. +|.. .+..++..++..++.+++|.|+|++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4578899999999 89999999999999986 4543 358899999999999999999999999988753
No 43
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.06 E-value=1.7e-09 Score=62.59 Aligned_cols=61 Identities=52% Similarity=0.894 Sum_probs=57.2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHH
Q 029304 117 LKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMM 177 (195)
Q Consensus 117 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 177 (195)
+..+|..+|.+++|.|+.++|..++...+...+...+..++..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999999999999999875
No 44
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.06 E-value=9.1e-10 Score=85.11 Aligned_cols=142 Identities=17% Similarity=0.258 Sum_probs=83.5
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHcCCCCC---HHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHH
Q 029304 45 RQVFNKFDANGDGKISASELGSILTSLGHAAT---EEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAF 121 (195)
Q Consensus 45 ~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~---~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f 121 (195)
+.-|..+|+...|.|+..+|..++-.....-. ...+.++-+.++.. +-.|+++||..++.....-. .+..+.
T Consensus 321 ~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~----dfd~Al 395 (489)
T KOG2643|consen 321 ELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLN----DFDIAL 395 (489)
T ss_pred HHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhh----HHHHHH
Confidence 33455566665666666666665544321111 11334444444333 33366666666555422211 122222
Q ss_pred HhhcCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcCCCccccCCCCCc
Q 029304 122 SVYDIDGNGSITAEELHQVLRS-LGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAGSRYEFADPVQGQ 192 (195)
Q Consensus 122 ~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~~~~~~~~~~ 192 (195)
..|- ...+.|+..+|+++... .|..+++..++.+|+.+|.|+||.++++||+..|.+.-+.....|....
T Consensus 396 ~fy~-~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~Rmhrgl~~p~~~g 466 (489)
T KOG2643|consen 396 RFYH-MAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRRMHRGLELPKDTG 466 (489)
T ss_pred HHHH-HcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHHhhccccCCcccc
Confidence 2221 12345666666666554 3788888888999999999999999999999999998877666665543
No 45
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.06 E-value=1.6e-09 Score=68.72 Aligned_cols=67 Identities=25% Similarity=0.540 Sum_probs=59.3
Q ss_pred hHHHHHHHhhhhcC-CC-CCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 40 DVHELRQVFNKFDA-NG-DGKISASELGSILTS-----LGHAATEEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 40 ~~~~~~~~F~~~d~-~~-~g~l~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
-...++.+|..+|. ++ +|+|+.++++.++.. ++...+..++..+++.+|.+++|.|+|++|+.++..
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 35678999999997 87 699999999999986 466788999999999999999999999999988764
No 46
>PLN02964 phosphatidylserine decarboxylase
Probab=99.05 E-value=3.7e-09 Score=87.35 Aligned_cols=124 Identities=12% Similarity=0.202 Sum_probs=92.2
Q ss_pred CCcccHHHHHHHHHHcCCCCC---HHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcc
Q 029304 56 DGKISASELGSILTSLGHAAT---EEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSI 132 (195)
Q Consensus 56 ~g~l~~~e~~~~l~~~~~~~~---~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 132 (195)
...++.+++......--..+. ..++...|..+|++++|.+ ....+..+............+..+|+.+|.+++|.|
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i-Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~I 196 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV-VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQL 196 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC-HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeE
Confidence 456777777665532001222 3556777888899999987 443333332111112212248999999999999999
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcC
Q 029304 133 TAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 133 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 180 (195)
+++||..++..++...+++++..+|+.+|.|++|.|+++||..++...
T Consensus 197 dfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 197 SFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 999999999999888889999999999999999999999999998884
No 47
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.04 E-value=2.3e-09 Score=67.64 Aligned_cols=66 Identities=36% Similarity=0.634 Sum_probs=58.1
Q ss_pred HHHHHHHhhhhc-CCCCC-cccHHHHHHHHHH-cC----CCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 41 VHELRQVFNKFD-ANGDG-KISASELGSILTS-LG----HAATEEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 41 ~~~~~~~F~~~d-~~~~g-~l~~~e~~~~l~~-~~----~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
+..++++|..+| .+++| .|+.++++.++.. ++ ...+..++..+++.+|.+++|.|+|++|+.++..
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 467899999997 99999 5999999999975 43 3468899999999999999999999999988765
No 48
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.04 E-value=1.8e-09 Score=67.44 Aligned_cols=67 Identities=22% Similarity=0.410 Sum_probs=57.4
Q ss_pred HHHHHHHHHh-hcCCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcC
Q 029304 114 MENLKDAFSV-YDIDGNG-SITAEELHQVLRSL-----GDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 114 ~~~~~~~f~~-~D~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 180 (195)
...+..+|+. +|++|+| +|+.+||+.++... +...++.++..++..+|.|+||.|+|+||+.++...
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3478889988 6787876 99999999999886 335667899999999999999999999999988653
No 49
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.03 E-value=1.5e-09 Score=61.41 Aligned_cols=52 Identities=42% Similarity=0.832 Sum_probs=48.3
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 55 GDGKISASELGSILTSLGHA-ATEEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 55 ~~g~l~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
.+|.|+.++|+.++..+|.. ++.+++..+|..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888999 99999999999999999999999999988753
No 50
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.03 E-value=1.4e-09 Score=64.29 Aligned_cols=60 Identities=32% Similarity=0.438 Sum_probs=54.7
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 45 RQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 45 ~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
+.+|..+|.+++|.|+.+++..++..++. +..++..++..++.+++|.|+|++|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 56899999999999999999999998764 8889999999999999999999999988765
No 51
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.01 E-value=3.5e-09 Score=82.54 Aligned_cols=139 Identities=19% Similarity=0.302 Sum_probs=110.4
Q ss_pred CCCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHH----ccCCCCceeHHHHHHHHhhcC
Q 029304 33 NNNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREI----DADGDGFVDFDEFVELNTKGV 108 (195)
Q Consensus 33 ~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~----d~~~~~~i~~~eF~~~~~~~~ 108 (195)
..-++-+....+...|..+|.|++|.|+.+++...- ...++.-.++++|..+ -...+|+++|++|+.++...-
T Consensus 269 ~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~---d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e 345 (493)
T KOG2562|consen 269 TRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYG---DHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE 345 (493)
T ss_pred hhheeHHHHHHHHHHHhhhccccccccCHHHHHHHh---ccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc
Confidence 345566667777788999999999999999998874 3356678899999943 345688999999999988743
Q ss_pred CcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-------C-CC-CCHHHHHHHHHhhcCCCCcceeHHHHHH
Q 029304 109 DSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSL-------G-DD-CTLAECRRMIRGVDCDGDGTIDFEEFKV 175 (195)
Q Consensus 109 ~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-------~-~~-~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 175 (195)
. ......+.-.|+.+|.+++|.|+..|++.+.+.. | .. .-++.+.++++.+.....++|++++|..
T Consensus 346 ~-k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 346 D-KDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred c-CCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 3 3335689999999999999999999998888753 2 12 2356778889999888899999999987
No 52
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.98 E-value=4.4e-09 Score=60.78 Aligned_cols=61 Identities=56% Similarity=0.953 Sum_probs=56.6
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHH
Q 029304 44 LRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELN 104 (195)
Q Consensus 44 ~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~ 104 (195)
+..+|..+|.+++|.|+.+++..++..++...+...+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999998764
No 53
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.94 E-value=9.9e-09 Score=64.10 Aligned_cols=69 Identities=28% Similarity=0.464 Sum_probs=58.4
Q ss_pred hHhHHHHHHHhhh-hcCCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 38 IPDVHELRQVFNK-FDANGDG-KISASELGSILTSL-----GHAATEEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 38 ~~~~~~~~~~F~~-~d~~~~g-~l~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
+..+..+..+|.. +|.+++| +|+.+||+.++... +......++..+++.+|.+++|.|+|++|+.++..
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 3556789999999 6777865 99999999999864 33556789999999999999999999999988765
No 54
>PF14658 EF-hand_9: EF-hand domain
Probab=98.93 E-value=6.3e-09 Score=60.13 Aligned_cols=61 Identities=25% Similarity=0.522 Sum_probs=57.1
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhhcCCCC-cceeHHHHHHHHHc
Q 029304 119 DAFSVYDIDGNGSITAEELHQVLRSLGD-DCTLAECRRMIRGVDCDGD-GTIDFEEFKVMMTA 179 (195)
Q Consensus 119 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~eF~~~l~~ 179 (195)
.+|..+|.++.|.|...++..+|+.++. ..++.+++.+...+|.++. |.|+++.|+..|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3699999999999999999999999998 8899999999999999987 99999999998864
No 55
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.91 E-value=4e-08 Score=85.82 Aligned_cols=141 Identities=24% Similarity=0.431 Sum_probs=112.6
Q ss_pred CCCCCCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCC-------HHHHHHHHHHHccCCCCceeHHHHHH
Q 029304 30 SNNNNNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAAT-------EEELQKMVREIDADGDGFVDFDEFVE 102 (195)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~-------~~~~~~l~~~~d~~~~~~i~~~eF~~ 102 (195)
.......|++.+.++..+|+.||.+.+|.|+..+|+.+|+++|+.++ +.++..++..+|++.+|.|+..+|+.
T Consensus 2241 arn~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~a 2320 (2399)
T KOG0040|consen 2241 ARNHNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMA 2320 (2399)
T ss_pred hhccCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHH
Confidence 34567899999999999999999999999999999999999998873 34799999999999999999999999
Q ss_pred HHhhcCCc-HHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhc----CC----CCcceeHHHH
Q 029304 103 LNTKGVDS-AEVMENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVD----CD----GDGTIDFEEF 173 (195)
Q Consensus 103 ~~~~~~~~-~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d----~~----~~g~i~~~eF 173 (195)
++...-.. -.....+..+|+.+|. +..+|+.+++...| +..+..-++..+. +. ..+.++|.+|
T Consensus 2321 fmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~l-------treqaefc~s~m~~~~e~~~~~s~q~~l~y~df 2392 (2399)
T KOG0040|consen 2321 FMISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQNL-------TREQAEFCMSKMKPYAETSSGRSDQVALDYKDF 2392 (2399)
T ss_pred HHHhcccccccchHHHHHHHHHhhc-CCccccHHHHHhcC-------CHHHHHHHHHHhhhhcccccCCCccccccHHHH
Confidence 88754322 2223489999999998 88899999987554 5566555555542 21 2335899999
Q ss_pred HHHHH
Q 029304 174 KVMMT 178 (195)
Q Consensus 174 ~~~l~ 178 (195)
...+.
T Consensus 2393 v~sl~ 2397 (2399)
T KOG0040|consen 2393 VNSLF 2397 (2399)
T ss_pred HHHHh
Confidence 87664
No 56
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.90 E-value=1.1e-08 Score=66.87 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHc
Q 029304 113 VMENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTA 179 (195)
Q Consensus 113 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 179 (195)
....+...|..+|.|++|.|+.+|+..+. ....+..+..++..+|.|+||.||++||..++..
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 34578999999999999999999999876 2344678899999999999999999999999944
No 57
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.87 E-value=1.8e-08 Score=65.85 Aligned_cols=65 Identities=28% Similarity=0.356 Sum_probs=52.2
Q ss_pred CChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHH
Q 029304 36 VIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELN 104 (195)
Q Consensus 36 l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~ 104 (195)
+.+.....+.-.|..+|.|++|.|+.+|+..+. +......+..++..+|.+++|.||++||..++
T Consensus 42 ~~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 42 LYPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hhHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 356777788888999999999999999988775 34456777888888888888888888888777
No 58
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.82 E-value=7.7e-08 Score=74.22 Aligned_cols=128 Identities=23% Similarity=0.258 Sum_probs=100.9
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHH
Q 029304 41 VHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDA 120 (195)
Q Consensus 41 ~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~ 120 (195)
.+..+.+|...|.|.+|.++..+|+..+. ..+.++-.+|...|.+.+|.|+-+|.-..+...-.... .+....+
T Consensus 50 ~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~-----~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~-de~~~k~ 123 (463)
T KOG0036|consen 50 YEAAKMLFSAMDANRDGRVDYSEFKRYLD-----NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLS-DEKAAKF 123 (463)
T ss_pred hHHHHHHHHhcccCcCCcccHHHHHHHHH-----HhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccC-HHHHHHH
Confidence 35668889999999999999999999986 37888999999999999999999998888877443333 4577789
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh------cCCCCcceeHHHHHHHHHc
Q 029304 121 FSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGV------DCDGDGTIDFEEFKVMMTA 179 (195)
Q Consensus 121 f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~------d~~~~g~i~~~eF~~~l~~ 179 (195)
|+..|+++++.|+++|+++.+.-. +++.+..+++.+ |...+..|. ++|......
T Consensus 124 ~e~~d~~g~~~I~~~e~rd~~ll~----p~s~i~di~~~W~h~~~idigE~~~iP-dg~s~~e~~ 183 (463)
T KOG0036|consen 124 FEHMDKDGKATIDLEEWRDHLLLY----PESDLEDIYDFWRHVLLIDIGEDAVLP-DGDSKLEND 183 (463)
T ss_pred HHHhccCCCeeeccHHHHhhhhcC----ChhHHHHHHHhhhhheEEEccccccCC-cchHHHHhc
Confidence 999999999999999999988543 355666665554 555666676 666665443
No 59
>PF14658 EF-hand_9: EF-hand domain
Probab=98.82 E-value=2.7e-08 Score=57.51 Aligned_cols=61 Identities=31% Similarity=0.636 Sum_probs=56.9
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHHHccCCC-CceeHHHHHHHHhh
Q 029304 46 QVFNKFDANGDGKISASELGSILTSLGH-AATEEELQKMVREIDADGD-GFVDFDEFVELNTK 106 (195)
Q Consensus 46 ~~F~~~d~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~-~~i~~~eF~~~~~~ 106 (195)
..|..+|.++.|.|...++..+|+..+. ...+.+++.+...+|+++. |.|+++.|+..+..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3699999999999999999999999988 8999999999999999998 99999999988765
No 60
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.81 E-value=2.4e-08 Score=62.38 Aligned_cols=66 Identities=21% Similarity=0.425 Sum_probs=56.4
Q ss_pred HHHHHHHHhhcCC--CCCcccHHHHHHHHH-HhCCCCC----HHHHHHHHHhhcCCCCcceeHHHHHHHHHcC
Q 029304 115 ENLKDAFSVYDID--GNGSITAEELHQVLR-SLGDDCT----LAECRRMIRGVDCDGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 115 ~~~~~~f~~~D~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 180 (195)
..+..+|..++.. ++|.|+.+||+.++. .+|..++ +.+++.++..+|.+++|.|+|++|+.++...
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4677889999865 478999999999997 5555565 8999999999999999999999999988753
No 61
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.75 E-value=5.8e-08 Score=60.63 Aligned_cols=68 Identities=19% Similarity=0.449 Sum_probs=57.8
Q ss_pred HhHHHHHHHhhhhcCC--CCCcccHHHHHHHHH-HcCCCCC----HHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 39 PDVHELRQVFNKFDAN--GDGKISASELGSILT-SLGHAAT----EEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 39 ~~~~~~~~~F~~~d~~--~~g~l~~~e~~~~l~-~~~~~~~----~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
.-+..+...|..|+.. ++|.|+.++|+.++. .++..++ ..++..+++.+|.+++|.|+|++|+.++..
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 3466889999999866 479999999999996 4554455 899999999999999999999999988775
No 62
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.72 E-value=7.3e-08 Score=69.57 Aligned_cols=140 Identities=24% Similarity=0.335 Sum_probs=98.1
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHc---CCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcC----------
Q 029304 42 HELRQVFNKFDANGDGKISASELGSILTSL---GHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGV---------- 108 (195)
Q Consensus 42 ~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~---~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~---------- 108 (195)
+.+..+|...|.|.+|+|+..++++.+... .+.-+..+....|+.+|++++|.|+|++|.--+...-
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekevada 180 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADA 180 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHHH
Confidence 478999999999999999999999887542 1122334556678888999999999999976432210
Q ss_pred -------------------------------------------------CcHHHHHHHHHHHHhhcCCCCCcccHHHHHH
Q 029304 109 -------------------------------------------------DSAEVMENLKDAFSVYDIDGNGSITAEELHQ 139 (195)
Q Consensus 109 -------------------------------------------------~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 139 (195)
........++.+...+|++++..++..+|..
T Consensus 181 irlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFis 260 (362)
T KOG4251|consen 181 IRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFIS 260 (362)
T ss_pred hhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhc
Confidence 0011112566778888999999999999876
Q ss_pred HHHHh-----CCCCC----HHHHHHHHHhhcCCCCcceeHHHHHHHHHcCC
Q 029304 140 VLRSL-----GDDCT----LAECRRMIRGVDCDGDGTIDFEEFKVMMTAGS 181 (195)
Q Consensus 140 ~l~~~-----~~~~~----~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 181 (195)
..-.. |..+. .....++=..+|.|+||.++++|...++-..+
T Consensus 261 lpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n 311 (362)
T KOG4251|consen 261 LPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQN 311 (362)
T ss_pred CCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchh
Confidence 54221 22222 23356677778999999999999998855443
No 63
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.72 E-value=1e-07 Score=66.71 Aligned_cols=69 Identities=30% Similarity=0.509 Sum_probs=63.6
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcCCC
Q 029304 114 MENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAGSR 182 (195)
Q Consensus 114 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~ 182 (195)
.+.+..+|+.||.+.||+|++.|++.+|..+|.+.|.--+..+++.+|.|.+|+|++.+|.-.+.....
T Consensus 98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa 166 (244)
T KOG0041|consen 98 IKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA 166 (244)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc
Confidence 457888999999999999999999999999999999888999999999999999999999988876654
No 64
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.68 E-value=1.5e-07 Score=60.31 Aligned_cols=70 Identities=26% Similarity=0.407 Sum_probs=60.3
Q ss_pred CCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 34 NNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 34 ~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
+.++++|.+.+..+|..++. .+|.|+.++.+.++...+ ++.+.+..||...|.+++|.++++||+-.+..
T Consensus 2 ~~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 2 PKLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp ---SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 57889999999999999985 689999999999998664 57899999999999999999999999988776
No 65
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.65 E-value=2.2e-07 Score=65.04 Aligned_cols=109 Identities=24% Similarity=0.366 Sum_probs=86.4
Q ss_pred CCCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHH
Q 029304 33 NNNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAE 112 (195)
Q Consensus 33 ~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~ 112 (195)
++-++..+|+.+..+|..||.+.+|+|+..+++..|.++|-.-+.--+..++..+|-+.+|+|+|.+|+-++.......-
T Consensus 90 F~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL 169 (244)
T KOG0041|consen 90 FSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGEL 169 (244)
T ss_pred hhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhcccc
Confidence 44678889999999999999999999999999999999999888888999999999999999999999988776443221
Q ss_pred HH-HHHHHHH--HhhcCCCCCcccHHHHHHHH
Q 029304 113 VM-ENLKDAF--SVYDIDGNGSITAEELHQVL 141 (195)
Q Consensus 113 ~~-~~~~~~f--~~~D~~~~g~i~~~e~~~~l 141 (195)
.. ..+..+= ..+|..+.|......|-.+=
T Consensus 170 ~~ds~~~~LAr~~eVDVskeGV~GAknFFeAK 201 (244)
T KOG0041|consen 170 QEDSGLLRLARLSEVDVSKEGVSGAKNFFEAK 201 (244)
T ss_pred ccchHHHHHHHhcccchhhhhhhhHHHHHHHH
Confidence 11 1223332 34788888877777665443
No 66
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.56 E-value=2.5e-06 Score=66.51 Aligned_cols=131 Identities=21% Similarity=0.360 Sum_probs=91.9
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHc------CC----------CCCHHHHHHH-HHHHccCCCCceeHHHHHHHHh
Q 029304 43 ELRQVFNKFDANGDGKISASELGSILTSL------GH----------AATEEELQKM-VREIDADGDGFVDFDEFVELNT 105 (195)
Q Consensus 43 ~~~~~F~~~d~~~~g~l~~~e~~~~l~~~------~~----------~~~~~~~~~l-~~~~d~~~~~~i~~~eF~~~~~ 105 (195)
.++-.|+.+|.|+||.|+.+||..+.+-. +. .........+ .-.+++++++.+++++|+.++.
T Consensus 234 ~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred cceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 45667999999999999999998876421 11 1111111122 2236899999999999999988
Q ss_pred hcCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCH--HHHHHHHHhhcCCCCcceeHHHHHHHHHc
Q 029304 106 KGVDSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSLG-DDCTL--AECRRMIRGVDCDGDGTIDFEEFKVMMTA 179 (195)
Q Consensus 106 ~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~--~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 179 (195)
.+ ..+.+..-|..+|+...|.|+..+|-.++-... .+... ..+..+-+.+..+ +..|+++||..++.=
T Consensus 314 ~L-----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~F 384 (489)
T KOG2643|consen 314 NL-----QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRF 384 (489)
T ss_pred HH-----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHH
Confidence 72 355777889999999889999999998887664 22221 1244555556544 557999998887643
No 67
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.52 E-value=1.7e-07 Score=45.55 Aligned_cols=27 Identities=41% Similarity=0.808 Sum_probs=16.6
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHH
Q 029304 117 LKDAFSVYDIDGNGSITAEELHQVLRS 143 (195)
Q Consensus 117 ~~~~f~~~D~~~~g~i~~~e~~~~l~~ 143 (195)
+..+|+.+|+|++|+|+++||+.+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 455666666666666666666666543
No 68
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.47 E-value=1.9e-06 Score=53.48 Aligned_cols=65 Identities=12% Similarity=0.323 Sum_probs=51.5
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHh-----CCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcC
Q 029304 115 ENLKDAFSVYDIDGNGSITAEELHQVLRSL-----GDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 115 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 180 (195)
..+..+|..|. .+.+.++..||+.++..- +..-.+..++.+++..|.|+||.|+|.||..++...
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 36677888887 446689999999999653 334467788999999999999999999999887653
No 69
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.45 E-value=3.4e-07 Score=44.45 Aligned_cols=27 Identities=37% Similarity=0.792 Sum_probs=19.7
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHH
Q 029304 44 LRQVFNKFDANGDGKISASELGSILTS 70 (195)
Q Consensus 44 ~~~~F~~~d~~~~g~l~~~e~~~~l~~ 70 (195)
++.+|+.+|.|++|+|+++||..++++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 566777777777777777777777664
No 70
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.43 E-value=3.4e-06 Score=52.32 Aligned_cols=67 Identities=18% Similarity=0.393 Sum_probs=54.1
Q ss_pred HhHHHHHHHhhhhcCCCCCcccHHHHHHHHHH-c----CCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 39 PDVHELRQVFNKFDANGDGKISASELGSILTS-L----GHAATEEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 39 ~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~-~----~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
.-+..+..+|..|. .+.+.|+..||+.++.. + ...-.+..+..+++..|.+++|.|+|.||+.++..
T Consensus 5 ~ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 5 HSMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 34567888999997 45679999999999863 2 33446778999999999999999999999988776
No 71
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.41 E-value=2.2e-06 Score=57.67 Aligned_cols=64 Identities=34% Similarity=0.576 Sum_probs=44.6
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHh
Q 029304 42 HELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNT 105 (195)
Q Consensus 42 ~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~ 105 (195)
..+...|.-||.++.|+|+.+.++.+|...|-+++.+++..+|+.+-.+..|.|+|..|+..+.
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 3456677777777777777777777777777777777777777777666667777777766654
No 72
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.38 E-value=8.5e-06 Score=64.63 Aligned_cols=104 Identities=14% Similarity=0.351 Sum_probs=74.9
Q ss_pred hHhHHHHHHHhhhhcCCCCCcccHHHHHHHH-HHcCCCCCHHHHHHHHHH-HccCCCCceeHHHHHHHHhhcCCcHHHHH
Q 029304 38 IPDVHELRQVFNKFDANGDGKISASELGSIL-TSLGHAATEEELQKMVRE-IDADGDGFVDFDEFVELNTKGVDSAEVME 115 (195)
Q Consensus 38 ~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l-~~~~~~~~~~~~~~l~~~-~d~~~~~~i~~~eF~~~~~~~~~~~~~~~ 115 (195)
+.++..+--.|...+.++.-..+.++|.... .-++..-...++.+++.. .|..++|-|+|+||+.+-.. ++.+ ..
T Consensus 32 ~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~-lC~p--Da 108 (694)
T KOG0751|consen 32 PKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESV-LCAP--DA 108 (694)
T ss_pred hHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhh-ccCc--hH
Confidence 3444444444445567788889999997654 334544455566666655 47788999999999876555 4433 23
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 029304 116 NLKDAFSVYDIDGNGSITAEELHQVLRSL 144 (195)
Q Consensus 116 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 144 (195)
....+|..||+.+.|.+|.+++.+++...
T Consensus 109 l~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 109 LFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred HHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 77889999999999999999999999875
No 73
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.35 E-value=7.9e-07 Score=44.02 Aligned_cols=30 Identities=53% Similarity=0.929 Sum_probs=24.3
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHH-HhC
Q 029304 116 NLKDAFSVYDIDGNGSITAEELHQVLR-SLG 145 (195)
Q Consensus 116 ~~~~~f~~~D~~~~g~i~~~e~~~~l~-~~~ 145 (195)
++..+|+.+|.+++|.|+.+||+.+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367889999999999999999999988 454
No 74
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.35 E-value=2.3e-05 Score=65.23 Aligned_cols=147 Identities=18% Similarity=0.295 Sum_probs=121.4
Q ss_pred CCCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHH
Q 029304 33 NNNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAE 112 (195)
Q Consensus 33 ~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~ 112 (195)
..........++..+|+..|.+.+|.+++.+...++..+...+....+..+|+..+....+.+...+|..+........
T Consensus 127 ~~~~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp- 205 (746)
T KOG0169|consen 127 SMRQRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP- 205 (746)
T ss_pred hhhhcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc-
Confidence 4455556677999999999999999999999999999999999999999999999888899999999999887744443
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHhhcCC----CCcceeHHHHHHHHHcCCCcc
Q 029304 113 VMENLKDAFSVYDIDGNGSITAEELHQVLRSLG--DDCTLAECRRMIRGVDCD----GDGTIDFEEFKVMMTAGSRYE 184 (195)
Q Consensus 113 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~l~~~~~~~ 184 (195)
.+..+|..+-.+ .++++..++..++.... ...+.+.+++|++.+... ..+.++++.|..+|.+.....
T Consensus 206 ---ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~~~~~ 279 (746)
T KOG0169|consen 206 ---EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSPDCNP 279 (746)
T ss_pred ---hHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCccCCC
Confidence 566677777544 89999999999999874 356777888888877543 345699999999998876543
No 75
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.31 E-value=6.6e-06 Score=52.76 Aligned_cols=63 Identities=24% Similarity=0.415 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHc
Q 029304 114 MENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTA 179 (195)
Q Consensus 114 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 179 (195)
...+..+|...|. ++|.|+-++.+.+|...+ ++.+.+..||...|.+++|.++++||+-.|.-
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 4578899999985 689999999999998766 77899999999999999999999999986653
No 76
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.29 E-value=9.3e-07 Score=66.37 Aligned_cols=106 Identities=13% Similarity=0.156 Sum_probs=90.4
Q ss_pred HHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q 029304 78 EELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMI 157 (195)
Q Consensus 78 ~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 157 (195)
+.+..+|..||.+++|.++|.+.+..+............++-+|+.|+...||.+.-.+|.-+|+.. ..+.+-.+-.+|
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~-lgv~~l~v~~lf 337 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVV-LGVEVLRVPVLF 337 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHh-cCcceeeccccc
Confidence 5678899999999999999999999888877777777899999999999999999999999888765 223333456689
Q ss_pred HhhcCCCCcceeHHHHHHHHHcCCCcc
Q 029304 158 RGVDCDGDGTIDFEEFKVMMTAGSRYE 184 (195)
Q Consensus 158 ~~~d~~~~g~i~~~eF~~~l~~~~~~~ 184 (195)
..++...+|+|++.+|..++...+.+.
T Consensus 338 ~~i~q~d~~ki~~~~f~~fa~~~p~~a 364 (412)
T KOG4666|consen 338 PSIEQKDDPKIYASNFRKFAATEPNLA 364 (412)
T ss_pred hhhhcccCcceeHHHHHHHHHhCchhh
Confidence 999999999999999999998887764
No 77
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.24 E-value=2.1e-06 Score=42.45 Aligned_cols=30 Identities=53% Similarity=0.845 Sum_probs=25.1
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHH-HcC
Q 029304 43 ELRQVFNKFDANGDGKISASELGSILT-SLG 72 (195)
Q Consensus 43 ~~~~~F~~~d~~~~g~l~~~e~~~~l~-~~~ 72 (195)
+++.+|..+|.+++|+|+.+||..+++ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 468889999999999999999999998 554
No 78
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.20 E-value=2.7e-05 Score=51.58 Aligned_cols=102 Identities=18% Similarity=0.215 Sum_probs=73.5
Q ss_pred HHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCC--CCCcccHHHHHHHHHHhC---CCCCHHH
Q 029304 78 EELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDID--GNGSITAEELHQVLRSLG---DDCTLAE 152 (195)
Q Consensus 78 ~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~--~~g~i~~~e~~~~l~~~~---~~~~~~~ 152 (195)
.++..+|..||..+++.|++.+.-..+.. +........+.++...++.+ +--.|++++|.-++..++ ..-+-++
T Consensus 11 ~e~ke~F~lfD~~gD~ki~~~q~gdvlRa-lG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ed 89 (152)
T KOG0030|consen 11 EEFKEAFLLFDRTGDGKISGSQVGDVLRA-LGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYED 89 (152)
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHH-hcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHH
Confidence 67778888888888888888888777776 44444455666677766655 445688888888877764 3455666
Q ss_pred HHHHHHhhcCCCCcceeHHHHHHHHHcC
Q 029304 153 CRRMIRGVDCDGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 153 ~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 180 (195)
+-+-++.+|..++|.|...++...+..-
T Consensus 90 fvegLrvFDkeg~G~i~~aeLRhvLttl 117 (152)
T KOG0030|consen 90 FVEGLRVFDKEGNGTIMGAELRHVLTTL 117 (152)
T ss_pred HHHHHHhhcccCCcceeHHHHHHHHHHH
Confidence 7777778888888888888887776653
No 79
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.18 E-value=1.1e-05 Score=44.00 Aligned_cols=49 Identities=22% Similarity=0.366 Sum_probs=39.4
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 58 KISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 58 ~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
++++.|++.+|+.+++.++...+..+|..+|.+++|.+.-+||..++..
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999888764
No 80
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=4.6e-05 Score=63.53 Aligned_cols=140 Identities=19% Similarity=0.243 Sum_probs=111.9
Q ss_pred CCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcC------
Q 029304 35 NVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGV------ 108 (195)
Q Consensus 35 ~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~------ 108 (195)
.+|.++..+.-..|..+ ..+.|+|+-+.-+.++-.. .++...+..||...|.|+||+++-.||.-.|....
T Consensus 9 avT~~Er~K~~~qF~~L-kp~~gfitg~qArnfflqS--~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~ 85 (1118)
T KOG1029|consen 9 AVTDEERQKHDAQFGQL-KPGQGFITGDQARNFFLQS--GLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGI 85 (1118)
T ss_pred ccchHHHHHHHHHHhcc-CCCCCccchHhhhhhHHhc--CCChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCC
Confidence 45677777777778777 6778999999999887654 45788899999999999999999999977643220
Q ss_pred --------------------------------------------------------------------------------
Q 029304 109 -------------------------------------------------------------------------------- 108 (195)
Q Consensus 109 -------------------------------------------------------------------------------- 108 (195)
T Consensus 86 ~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl 165 (1118)
T KOG1029|consen 86 QLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPL 165 (1118)
T ss_pred cCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Confidence
Q ss_pred Cc-----------------------HHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCC
Q 029304 109 DS-----------------------AEVMENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGD 165 (195)
Q Consensus 109 ~~-----------------------~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~ 165 (195)
.. ....-.+..+|+.+|+...|+++-.+-+.+|..-+ ++...+..|+..-|.|+|
T Consensus 166 ~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~D 243 (1118)
T KOG1029|consen 166 PHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGD 243 (1118)
T ss_pred CCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCC
Confidence 00 00012678899999999999999999999997655 667899999999999999
Q ss_pred cceeHHHHHHHHHc
Q 029304 166 GTIDFEEFKVMMTA 179 (195)
Q Consensus 166 g~i~~~eF~~~l~~ 179 (195)
|+++-+||+-.|.-
T Consensus 244 GkL~~dEfilam~l 257 (1118)
T KOG1029|consen 244 GKLSADEFILAMHL 257 (1118)
T ss_pred CcccHHHHHHHHHH
Confidence 99999999876543
No 81
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.14 E-value=1.7e-05 Score=63.00 Aligned_cols=124 Identities=17% Similarity=0.265 Sum_probs=79.6
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHcCCC------CCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHH
Q 029304 43 ELRQVFNKFDANGDGKISASELGSILTSLGHA------ATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMEN 116 (195)
Q Consensus 43 ~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~------~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~ 116 (195)
....+|+.+|+.++|.++.+++..++....+. .+.+.+.. .+.......++|.+|.++++.. ..+.
T Consensus 109 l~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~---~Fg~~~~r~~ny~~f~Q~lh~~-----~~E~ 180 (694)
T KOG0751|consen 109 LFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKL---HFGDIRKRHLNYAEFTQFLHEF-----QLEH 180 (694)
T ss_pred HHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHH---HhhhHHHHhccHHHHHHHHHHH-----HHHH
Confidence 44667777777777777777777777654321 12222332 3333444557777777777652 2345
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCc-ceeHHHHH
Q 029304 117 LKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDG-TIDFEEFK 174 (195)
Q Consensus 117 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g-~i~~~eF~ 174 (195)
..++|+..|+.++|.|+.=+|+.++-.....+..+.+++.+-......++ .+++-.|.
T Consensus 181 ~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~ 239 (694)
T KOG0751|consen 181 AEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFN 239 (694)
T ss_pred HHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHH
Confidence 77899999999999999999999998876555556666665555433333 34444443
No 82
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.11 E-value=1.3e-05 Score=63.29 Aligned_cols=54 Identities=31% Similarity=0.522 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcC
Q 029304 114 MENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 114 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 180 (195)
...+..+|+.+|.+++|.|+.+||.. +..+|..+|.|++|.|+++||...+...
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 45788899999999999999999942 4779999999999999999999988764
No 83
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.05 E-value=6.3e-06 Score=38.51 Aligned_cols=23 Identities=48% Similarity=0.902 Sum_probs=13.3
Q ss_pred HHHHHhhcCCCCCcccHHHHHHH
Q 029304 118 KDAFSVYDIDGNGSITAEELHQV 140 (195)
Q Consensus 118 ~~~f~~~D~~~~g~i~~~e~~~~ 140 (195)
..+|+.+|.|++|.|+.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 34556666666666666666553
No 84
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.02 E-value=3.6e-05 Score=42.06 Aligned_cols=47 Identities=17% Similarity=0.333 Sum_probs=35.3
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHH
Q 029304 132 ITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMT 178 (195)
Q Consensus 132 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 178 (195)
+++.|++.+|+.+.+.+++.-+..+|+..|.+++|.+..+||..++.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 67788888888888888888888888888888888888888888765
No 85
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.98 E-value=3.3e-05 Score=60.60 Aligned_cols=69 Identities=22% Similarity=0.341 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHccCCCCceeHHHHHHHHhhc---CCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 029304 76 TEEELQKMVREIDADGDGFVDFDEFVELNTKG---VDSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSL 144 (195)
Q Consensus 76 ~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~---~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 144 (195)
....++.+|+.+|.+.+|.|+.+||...+..+ +...-....+.++-+.+|-|+||.|++.||..+++-.
T Consensus 545 ~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 45556666666666666666666666654422 3333334456666666666666666666666666543
No 86
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.90 E-value=4e-05 Score=60.45 Aligned_cols=136 Identities=20% Similarity=0.335 Sum_probs=99.0
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHH--HHHcC------------CCCCHHHHHHH---HHHHccCCCCceeHHHHHHHHh
Q 029304 43 ELRQVFNKFDANGDGKISASELGSI--LTSLG------------HAATEEELQKM---VREIDADGDGFVDFDEFVELNT 105 (195)
Q Consensus 43 ~~~~~F~~~d~~~~g~l~~~e~~~~--l~~~~------------~~~~~~~~~~l---~~~~d~~~~~~i~~~eF~~~~~ 105 (195)
.+.++|..+++..+|.|+..+++.. +..+. ..++-+....+ |-..|.+.+|.|+-++......
T Consensus 226 vi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d 305 (493)
T KOG2562|consen 226 VIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD 305 (493)
T ss_pred HhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc
Confidence 4578899999999999999887653 22111 11222223333 4445888899999988876655
Q ss_pred hcCCcHHHHHHHHHHHH----hhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcCC
Q 029304 106 KGVDSAEVMENLKDAFS----VYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAGS 181 (195)
Q Consensus 106 ~~~~~~~~~~~~~~~f~----~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 181 (195)
..+. ...+.++|. .+-.-.+|.++.++|..++-++..+-++.-++.+|+.+|.+++|.|+..+...++..+.
T Consensus 306 ~tlt----~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~ 381 (493)
T KOG2562|consen 306 HTLT----ERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQL 381 (493)
T ss_pred cchh----hHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHH
Confidence 4332 336677777 33345789999999999999988777888899999999999999999998887766554
Q ss_pred C
Q 029304 182 R 182 (195)
Q Consensus 182 ~ 182 (195)
+
T Consensus 382 ~ 382 (493)
T KOG2562|consen 382 Q 382 (493)
T ss_pred H
Confidence 3
No 87
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.89 E-value=7.6e-05 Score=59.04 Aligned_cols=59 Identities=32% Similarity=0.543 Sum_probs=51.6
Q ss_pred CCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 029304 72 GHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSL 144 (195)
Q Consensus 72 ~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 144 (195)
+.......+..+|+.+|.+++|.|+++||.. ...+|..+|.|++|.|+.+||..++...
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 5566778899999999999999999999942 4568999999999999999999988653
No 88
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.88 E-value=6.5e-05 Score=60.12 Aligned_cols=74 Identities=27% Similarity=0.495 Sum_probs=65.8
Q ss_pred CCCCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCC---CCHHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 32 NNNNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHA---ATEEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 32 ~~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~---~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
....+|.+|+..+++.|...| +++|+|+..++..++...+.. ...+++..++...+.+.+|+|+|++|+..+..
T Consensus 9 ~~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 9 LQSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred hcccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 346899999999999999999 999999999999999876543 45789999999999999999999999997665
No 89
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.87 E-value=2.3e-05 Score=36.59 Aligned_cols=23 Identities=43% Similarity=0.866 Sum_probs=16.0
Q ss_pred HHHhhhhcCCCCCcccHHHHHHH
Q 029304 45 RQVFNKFDANGDGKISASELGSI 67 (195)
Q Consensus 45 ~~~F~~~d~~~~g~l~~~e~~~~ 67 (195)
+..|..+|.|++|.|+.+||..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45677777777777777777654
No 90
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.84 E-value=0.00017 Score=48.26 Aligned_cols=99 Identities=20% Similarity=0.346 Sum_probs=72.9
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHcCCCCCH-HHHHHHHHHHccCCCCceeHHHHHHHHhhcCC----cHHHHHHHHHH
Q 029304 46 QVFNKFDANGDGKISASELGSILTSLGHAATE-EELQKMVREIDADGDGFVDFDEFVELNTKGVD----SAEVMENLKDA 120 (195)
Q Consensus 46 ~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~-~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~----~~~~~~~~~~~ 120 (195)
++...+-.+|.|.+++++|..++.-+.--.+. -.+...|+.+|-++++.|.-.+....+..... .........++
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekv 154 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKV 154 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 34466678999999999999998765432222 23556677789999999988888777665332 22333456677
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHh
Q 029304 121 FSVYDIDGNGSITAEELHQVLRSL 144 (195)
Q Consensus 121 f~~~D~~~~g~i~~~e~~~~l~~~ 144 (195)
....|.+|||.|++.||..++...
T Consensus 155 ieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 155 IEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHhcCCCCCcccHHHHHHHHHhC
Confidence 888899999999999999988654
No 91
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.75 E-value=1.6e-05 Score=51.85 Aligned_cols=62 Identities=26% Similarity=0.384 Sum_probs=36.1
Q ss_pred HhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHH
Q 029304 39 PDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVE 102 (195)
Q Consensus 39 ~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~ 102 (195)
.....+.=.|..+|.|++|.|+..|+..+...+ ...+..+..+++.+|.++++.|++.||..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 444555666777777777777777776665433 34455667777777777777777777653
No 92
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.71 E-value=0.00028 Score=57.51 Aligned_cols=142 Identities=19% Similarity=0.286 Sum_probs=97.6
Q ss_pred CCCCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHH-HHcCCCCCHHHHHHHHHHHccCC-----CCceeHHHHHHHHh
Q 029304 32 NNNNVIIPDVHELRQVFNKFDANGDGKISASELGSIL-TSLGHAATEEELQKMVREIDADG-----DGFVDFDEFVELNT 105 (195)
Q Consensus 32 ~~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l-~~~~~~~~~~~~~~l~~~~d~~~-----~~~i~~~eF~~~~~ 105 (195)
....+.+..++.|.++|...|.|.+|.++-.|+...= ..++..+...++..+-...+... .+.++...|+-+..
T Consensus 185 ~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~ 264 (625)
T KOG1707|consen 185 EEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNT 264 (625)
T ss_pred ccccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHH
Confidence 3467889999999999999999999999999998774 45788888888777777664322 23456666665433
Q ss_pred hcCCcH-----------------------------------------HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 029304 106 KGVDSA-----------------------------------------EVMENLKDAFSVYDIDGNGSITAEELHQVLRSL 144 (195)
Q Consensus 106 ~~~~~~-----------------------------------------~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 144 (195)
.....+ .-.+.+..+|..||.++||.++..|+...+..+
T Consensus 265 lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~ 344 (625)
T KOG1707|consen 265 LFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTA 344 (625)
T ss_pred HHHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhC
Confidence 221111 112478889999999999999999999999988
Q ss_pred CCCC-CHHHHHHHHHhhcCCCCcceeHHHHHHH
Q 029304 145 GDDC-TLAECRRMIRGVDCDGDGTIDFEEFKVM 176 (195)
Q Consensus 145 ~~~~-~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 176 (195)
+... ..... -.....+..|.++|..|.+.
T Consensus 345 P~~pW~~~~~---~~~t~~~~~G~ltl~g~l~~ 374 (625)
T KOG1707|consen 345 PGSPWTSSPY---KDSTVKNERGWLTLNGFLSQ 374 (625)
T ss_pred CCCCCCCCcc---cccceecccceeehhhHHHH
Confidence 6322 21000 00111225677888877763
No 93
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.64 E-value=0.00016 Score=64.46 Aligned_cols=68 Identities=24% Similarity=0.444 Sum_probs=60.6
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCC-------CHHHHHHHHHhhcCCCCcceeHHHHHHHHHcCCC
Q 029304 115 ENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDC-------TLAECRRMIRGVDCDGDGTIDFEEFKVMMTAGSR 182 (195)
Q Consensus 115 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~-------~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~ 182 (195)
..+..+|+.||++++|.++..+|+..|+..|+.+ +++++..++..+|++.+|.|++.+|+.+|.+.-.
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ET 2327 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKET 2327 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccc
Confidence 4677899999999999999999999999999765 3348999999999999999999999999987543
No 94
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.63 E-value=0.00037 Score=42.85 Aligned_cols=65 Identities=22% Similarity=0.399 Sum_probs=53.8
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhC-C-CCCHHHHHHHHHhhcCC----CCcceeHHHHHHHHHcCCC
Q 029304 117 LKDAFSVYDIDGNGSITAEELHQVLRSLG-D-DCTLAECRRMIRGVDCD----GDGTIDFEEFKVMMTAGSR 182 (195)
Q Consensus 117 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~-~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~l~~~~~ 182 (195)
+..+|..+.. +.+.|+.++|+.+|.... . .++..++..++..+..+ ..+.+++++|..+|.+...
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N 72 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDEN 72 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTTC
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCcC
Confidence 5678988965 788999999999998764 3 57899999999998654 4789999999999988753
No 95
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.62 E-value=2.9e-05 Score=50.69 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHH
Q 029304 114 MENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKV 175 (195)
Q Consensus 114 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 175 (195)
...+.--|..+|.|++|.|+..|+..+...+ ...+..+..++...|.|+||.||+.||..
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 4577778999999999999999998776544 34456789999999999999999999975
No 96
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.55 E-value=0.00026 Score=53.57 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=86.3
Q ss_pred HhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHH
Q 029304 39 PDVHELRQVFNKFDANGDGKISASELGSILTSL-GHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENL 117 (195)
Q Consensus 39 ~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~ 117 (195)
.....+...|..||.+++|.+++.+-...+.-+ +-..+...++.-|+.|+...+|.+.-.+|..+++..+.-... .+
T Consensus 256 pvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l--~v 333 (412)
T KOG4666|consen 256 PVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVL--RV 333 (412)
T ss_pred chhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCccee--ec
Confidence 334678999999999999999998887777655 455778889999999999999999988888888775544332 67
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHh
Q 029304 118 KDAFSVYDIDGNGSITAEELHQVLRSL 144 (195)
Q Consensus 118 ~~~f~~~D~~~~g~i~~~e~~~~l~~~ 144 (195)
..+|...+...+|.|+.++|+.+....
T Consensus 334 ~~lf~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 334 PVLFPSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred cccchhhhcccCcceeHHHHHHHHHhC
Confidence 788999999999999999999998764
No 97
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.00057 Score=59.38 Aligned_cols=150 Identities=21% Similarity=0.277 Sum_probs=121.0
Q ss_pred CCCCCCCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcC
Q 029304 29 SSNNNNNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGV 108 (195)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~ 108 (195)
.......++..+..++..+|....+. .|.++.+..+.++.. -.++...+.++|...|.+.+|.++..+|.-.++...
T Consensus 116 ~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~--s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~ 192 (847)
T KOG0998|consen 116 AAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLN--SKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLIN 192 (847)
T ss_pred CcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhc--CCCChhhhccccccccccccCCCChhhhhhhhhHHH
Confidence 34555678899999999999999665 899999999888864 356778888999999999999999999987654321
Q ss_pred C-------------------------------------------------------------------------------
Q 029304 109 D------------------------------------------------------------------------------- 109 (195)
Q Consensus 109 ~------------------------------------------------------------------------------- 109 (195)
.
T Consensus 193 ~~l~~~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s 272 (847)
T KOG0998|consen 193 DLLNGNSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVS 272 (847)
T ss_pred HHhhcccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccc
Confidence 0
Q ss_pred -----cHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcCCCc
Q 029304 110 -----SAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAGSRY 183 (195)
Q Consensus 110 -----~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~ 183 (195)
.......+..+|...|.+.+|.|+..+++..+...| +....+..++...+..+.|.+++++|+-.+......
T Consensus 273 ~~~~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~~ 349 (847)
T KOG0998|consen 273 WSPKVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLEQK 349 (847)
T ss_pred cCcccChHHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhhhhhhhh
Confidence 112234677899999999999999999999998855 667789999999999999999999888776655443
No 98
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.23 E-value=0.0018 Score=52.24 Aligned_cols=68 Identities=26% Similarity=0.432 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC---CCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcCCC
Q 029304 114 MENLKDAFSVYDIDGNGSITAEELHQVLRSLGDD---CTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAGSR 182 (195)
Q Consensus 114 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~ 182 (195)
...+++.|...| +++|+|+..++..++...+.. ...+++++++...+.|.+|.|++++|...+.+-..
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s 88 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKS 88 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhh
Confidence 347888999999 999999999999999987644 35789999999999999999999999996655443
No 99
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.17 E-value=0.0054 Score=52.83 Aligned_cols=109 Identities=23% Similarity=0.195 Sum_probs=86.7
Q ss_pred CCCCCCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCH-----HHHHHHHHHHccCCCCceeHHHHHHHH
Q 029304 30 SNNNNNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATE-----EELQKMVREIDADGDGFVDFDEFVELN 104 (195)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~-----~~~~~l~~~~d~~~~~~i~~~eF~~~~ 104 (195)
...+...+.....+++..|..++....|.++.+++..++..+|..... .++..+....++..-|.+++.+|...+
T Consensus 735 ~R~sk~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl 814 (890)
T KOG0035|consen 735 ERDSKGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDL 814 (890)
T ss_pred HhcccchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHh
Confidence 455667777888899999999999999999999999999999988764 234444444566667899999999999
Q ss_pred hhcCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHH
Q 029304 105 TKGVDSAEVMENLKDAFSVYDIDGNGSITAEELHQ 139 (195)
Q Consensus 105 ~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 139 (195)
............+...|+.+-+++. +|..+|+..
T Consensus 815 ~R~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 815 EREYEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 8876666666678888888865544 788888876
No 100
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.08 E-value=0.00083 Score=31.47 Aligned_cols=27 Identities=41% Similarity=0.786 Sum_probs=19.2
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHH
Q 029304 44 LRQVFNKFDANGDGKISASELGSILTS 70 (195)
Q Consensus 44 ~~~~F~~~d~~~~g~l~~~e~~~~l~~ 70 (195)
++.+|..+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456677777777777777777777653
No 101
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.0021 Score=51.55 Aligned_cols=74 Identities=22% Similarity=0.194 Sum_probs=66.7
Q ss_pred CCCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcC
Q 029304 33 NNNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGV 108 (195)
Q Consensus 33 ~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~ 108 (195)
.-++|+++.+.+-+.|+..-+|.+|.|+-.--+.++.+. .+...|+..||...|.+++|.+++.||+..++...
T Consensus 222 pw~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVV 295 (737)
T KOG1955|consen 222 PWQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVV 295 (737)
T ss_pred ccccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHhhee
Confidence 348999999999999999999999999999999888754 56789999999999999999999999999988654
No 102
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.0038 Score=40.16 Aligned_cols=59 Identities=34% Similarity=0.465 Sum_probs=41.6
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHh------C---CC-CCHHHHHHHH----HhhcCCCCcceeHHHHHHH
Q 029304 118 KDAFSVYDIDGNGSITAEELHQVLRSL------G---DD-CTLAECRRMI----RGVDCDGDGTIDFEEFKVM 176 (195)
Q Consensus 118 ~~~f~~~D~~~~g~i~~~e~~~~l~~~------~---~~-~~~~~~~~~~----~~~d~~~~g~i~~~eF~~~ 176 (195)
-.-|+.+|.+++|.|+--|+..++... | .+ .++.++..++ +.-|.|.||.|+|-||...
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 345778888888888888887777654 2 22 3455655554 4457789999999999864
No 103
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.98 E-value=0.0016 Score=30.46 Aligned_cols=25 Identities=44% Similarity=0.876 Sum_probs=14.7
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHH
Q 029304 118 KDAFSVYDIDGNGSITAEELHQVLR 142 (195)
Q Consensus 118 ~~~f~~~D~~~~g~i~~~e~~~~l~ 142 (195)
..+|+.+|.+++|.|+..+|..++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 4455666666666666666665554
No 104
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.009 Score=38.46 Aligned_cols=71 Identities=24% Similarity=0.450 Sum_probs=49.7
Q ss_pred CCCCCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHc------CC----CCCHHHHHHHHHH----HccCCCCcee
Q 029304 31 NNNNNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSL------GH----AATEEELQKMVRE----IDADGDGFVD 96 (195)
Q Consensus 31 ~~~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~------~~----~~~~~~~~~l~~~----~d~~~~~~i~ 96 (195)
.+..++|+++++ -..|..+|.|+++.|+--++..++.-. |. ..++.++..++.. -|.|++|.|+
T Consensus 58 ~~~a~mtpeqlq--fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~ID 135 (144)
T KOG4065|consen 58 EKVAKMTPEQLQ--FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVID 135 (144)
T ss_pred chhhhCCHHHHh--hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceee
Confidence 446678888776 356899999999999999988887532 21 2345555555544 3677788888
Q ss_pred HHHHHHH
Q 029304 97 FDEFVEL 103 (195)
Q Consensus 97 ~~eF~~~ 103 (195)
|-||+..
T Consensus 136 YgEflK~ 142 (144)
T KOG4065|consen 136 YGEFLKR 142 (144)
T ss_pred HHHHHhh
Confidence 8888653
No 105
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.76 E-value=0.0087 Score=36.67 Aligned_cols=63 Identities=17% Similarity=0.410 Sum_probs=47.4
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHHHccC----CCCceeHHHHHHHHhh
Q 029304 43 ELRQVFNKFDANGDGKISASELGSILTSLGH--AATEEELQKMVREIDAD----GDGFVDFDEFVELNTK 106 (195)
Q Consensus 43 ~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~~----~~~~i~~~eF~~~~~~ 106 (195)
++..+|..+.. +.+.++.++|...|..-.. ..+...+..++..+.++ ..+.++++.|..++..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 35778888854 7889999999999876432 35788888888887544 3577888888887765
No 106
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.68 E-value=0.0021 Score=46.98 Aligned_cols=64 Identities=30% Similarity=0.487 Sum_probs=31.5
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHh-C--CCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHc
Q 029304 116 NLKDAFSVYDIDGNGSITAEELHQVLRSL-G--DDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTA 179 (195)
Q Consensus 116 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~--~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 179 (195)
.+..+|+..|.|.+|.|+..|+++.+..- . ..-..++-...|+..|.|+||.|+.+||.-.+..
T Consensus 102 klmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 102 KLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 45556666666666666666655444321 1 0011122233455556666666666666554443
No 107
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.58 E-value=0.032 Score=38.87 Aligned_cols=134 Identities=21% Similarity=0.219 Sum_probs=85.1
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcc---CCCCceeHHHH---HHHHhhcC--------
Q 029304 43 ELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDA---DGDGFVDFDEF---VELNTKGV-------- 108 (195)
Q Consensus 43 ~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~---~~~~~i~~~eF---~~~~~~~~-------- 108 (195)
.|++-...+|+|++|.|..-|-...++.+|..+-...+..++-.... ...+-+.-.-| +.-++...
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 45666778999999999999999999999998777666555554321 11111110001 11111100
Q ss_pred --CcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-------CCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHH
Q 029304 109 --DSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSL-------GDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMM 177 (195)
Q Consensus 109 --~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-------~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 177 (195)
...-..+.+.++|..+++.+.+.+|..|+..+++.- |.--..-|...++... .+++|.+..+.....+
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 011123689999999999899999999999999873 2111223344444443 5789999988876553
No 108
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.22 E-value=0.021 Score=46.89 Aligned_cols=81 Identities=21% Similarity=0.266 Sum_probs=73.1
Q ss_pred CCCCCCCCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhc
Q 029304 28 SSSNNNNNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKG 107 (195)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~ 107 (195)
...+..-.++++++...+..|..+|.+..|.++..+...+|++.+...+...+.+++...+.+-.|.+...+|..++...
T Consensus 579 ~~~~~~i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 579 SQMSIPIKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred cccccccccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 34556678999999999999999999999999999999999999889999999999999998889999999999888764
Q ss_pred C
Q 029304 108 V 108 (195)
Q Consensus 108 ~ 108 (195)
.
T Consensus 659 ~ 659 (680)
T KOG0042|consen 659 K 659 (680)
T ss_pred h
Confidence 3
No 109
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.07 E-value=0.013 Score=45.04 Aligned_cols=107 Identities=18% Similarity=0.242 Sum_probs=80.5
Q ss_pred CCCChHhHH----HHHHHhhhhcCCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 34 NNVIIPDVH----ELRQVFNKFDANGDGKISASELGSILTSLGH---AATEEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 34 ~~l~~~~~~----~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~---~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
+.=|..++. +|+..|+.+=.++.+......+..+-..+.. ..-..++.-+|..+|.+.++.++..|...+...
T Consensus 199 ~~Ct~qeL~~lg~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld 278 (434)
T KOG3555|consen 199 YACTDQELRRLGNRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD 278 (434)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhcc
Confidence 345555554 6788898887777777666666666544433 234578889999999999999999988766554
Q ss_pred cCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC
Q 029304 107 GVDSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSLG 145 (195)
Q Consensus 107 ~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 145 (195)
..+..++..|...|..+||.|+-.|....+...+
T Consensus 279 -----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 279 -----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred -----CchhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 3466888999999999999999999998887765
No 110
>PLN02952 phosphoinositide phospholipase C
Probab=96.04 E-value=0.062 Score=45.10 Aligned_cols=88 Identities=27% Similarity=0.441 Sum_probs=59.0
Q ss_pred CCceeHHHHHHHHhhcCC-cHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhhcC------
Q 029304 92 DGFVDFDEFVELNTKGVD-SAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSLGD--DCTLAECRRMIRGVDC------ 162 (195)
Q Consensus 92 ~~~i~~~eF~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~------ 162 (195)
.|.++|++|.+++..... .......+..+|..+-. +.+.|+.++|..+|..... ..+.+.+..++..+-.
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~ 92 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVT 92 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccc
Confidence 478899999877665321 11123478888888854 4468999999999987642 3566666777654421
Q ss_pred -CCCcceeHHHHHHHHHcC
Q 029304 163 -DGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 163 -~~~g~i~~~eF~~~l~~~ 180 (195)
...+.++++.|..+|.+.
T Consensus 93 ~~~~~~l~~~~F~~~l~s~ 111 (599)
T PLN02952 93 RYTRHGLNLDDFFHFLLYD 111 (599)
T ss_pred cccccCcCHHHHHHHHcCc
Confidence 123458999999999864
No 111
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.04 E-value=0.2 Score=43.55 Aligned_cols=121 Identities=13% Similarity=0.202 Sum_probs=88.1
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcc--CC-----CCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhh
Q 029304 52 DANGDGKISASELGSILTSLGHAATEEELQKMVREIDA--DG-----DGFVDFDEFVELNTKGVDSAEVMENLKDAFSVY 124 (195)
Q Consensus 52 d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~--~~-----~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~ 124 (195)
..+..|+|..+.+.+.+.. .-.+..++..+..+.. +. -...+++.|..++..+..+. .+..+|..+
T Consensus 158 qvn~~grip~knI~k~F~~---~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR~----eie~iF~ki 230 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSA---DKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPRP----EIEEIFRKI 230 (1189)
T ss_pred cccccccccHHHHHHHhhc---CCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCch----hHHHHHHHh
Confidence 3567788888877777653 2233445555555432 22 12367888888888744333 788899999
Q ss_pred cCCCCCcccHHHHHHHHHHhC----------CCCCHHHHHHHHHhhcCC----CCcceeHHHHHHHHHc
Q 029304 125 DIDGNGSITAEELHQVLRSLG----------DDCTLAECRRMIRGVDCD----GDGTIDFEEFKVMMTA 179 (195)
Q Consensus 125 D~~~~g~i~~~e~~~~l~~~~----------~~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~l~~ 179 (195)
..++.-+++.++|..++..-. ..+.+..+..+++.+..+ ..|.++-+.|+.++..
T Consensus 231 ~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 231 SGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred ccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 888889999999999997641 346678899999999776 4789999999999988
No 112
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.71 E-value=0.018 Score=44.31 Aligned_cols=70 Identities=24% Similarity=0.259 Sum_probs=60.0
Q ss_pred CCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhc
Q 029304 34 NNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKG 107 (195)
Q Consensus 34 ~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~ 107 (195)
..+.+.....+.=+|..+|.|.+|.|+..|++.+-. .-.+..+.-+|..+|.-.+|.|+-.||+..+...
T Consensus 242 ~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 242 TSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred cccCcchhhhhhhhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 346667777888899999999999999999998743 5678889999999999999999999999887653
No 113
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=0.041 Score=44.46 Aligned_cols=63 Identities=19% Similarity=0.282 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHH
Q 029304 114 MENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMT 178 (195)
Q Consensus 114 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 178 (195)
.+.+..-|+.+-.|-.|+|+-.--+.++.+- ++.-.|+.+||...|.+.||.+++.||+..|.
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 4567788999989999999999999999864 46668999999999999999999999999764
No 114
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=95.55 E-value=0.23 Score=30.93 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=42.4
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHh-------C----CCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcCCC
Q 029304 115 ENLKDAFSVYDIDGNGSITAEELHQVLRSL-------G----DDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAGSR 182 (195)
Q Consensus 115 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-------~----~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~ 182 (195)
++++.+|..+ .|++|.++...|..+|... | ..-.+..++.+|.... ....|+.++|+.++...++
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~ePq 78 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSEPQ 78 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT--T
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhCCC
Confidence 4677888888 4778889988888888653 1 1226778888888873 4567999999999998764
No 115
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.43 E-value=0.13 Score=35.56 Aligned_cols=62 Identities=16% Similarity=0.406 Sum_probs=47.3
Q ss_pred HHHhhhh---cCCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 45 RQVFNKF---DANGDGKISASELGSILTSLG---HAATEEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 45 ~~~F~~~---d~~~~g~l~~~e~~~~l~~~~---~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
+.+|..| -..+...++...|..+++..+ ..++...+.-+|..+-..+...|+|++|+.++..
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 4455555 356677899999999999754 4688999999999987777778999999888765
No 116
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.29 E-value=0.037 Score=46.08 Aligned_cols=106 Identities=17% Similarity=0.281 Sum_probs=78.8
Q ss_pred CCCCCCCChHhHHHHHHHhhhhc-----------CCCC---CcccHHHHHHHHHHc-CCCCCHHHHHHHHHHHccCCCCc
Q 029304 30 SNNNNNVIIPDVHELRQVFNKFD-----------ANGD---GKISASELGSILTSL-GHAATEEELQKMVREIDADGDGF 94 (195)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~F~~~d-----------~~~~---g~l~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~ 94 (195)
......++.+++..+..+|..-= ++-+ -+++.+.|..++..+ .+..+...+.++|+..|.+.+|.
T Consensus 492 ~~~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~ 571 (671)
T KOG4347|consen 492 VVQTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGL 571 (671)
T ss_pred hcccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcce
Confidence 34556788999999888886531 1111 125555666666544 33455667899999999999999
Q ss_pred eeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcccHHHH
Q 029304 95 VDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSITAEEL 137 (195)
Q Consensus 95 i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~ 137 (195)
++|.+++..+.. ++.....+.+.-+|+.+|..++ ....++.
T Consensus 572 Ltf~~lv~gL~~-l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 572 LTFKDLVSGLSI-LKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred eEHHHHHHHHHH-HHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 999999999988 4445556789999999999999 8888887
No 117
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.17 E-value=0.14 Score=35.79 Aligned_cols=36 Identities=8% Similarity=0.147 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcCCC
Q 029304 147 DCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAGSR 182 (195)
Q Consensus 147 ~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~ 182 (195)
++.+..++++|..++....+.+++.|...++..+-.
T Consensus 92 rFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~ 127 (174)
T PF05042_consen 92 RFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRN 127 (174)
T ss_pred cCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccc
Confidence 456677899999998888889999999999888643
No 118
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.83 E-value=0.085 Score=43.48 Aligned_cols=69 Identities=19% Similarity=0.213 Sum_probs=62.8
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcCCCc
Q 029304 115 ENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAGSRY 183 (195)
Q Consensus 115 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~ 183 (195)
...+.-|..+|.++.|+++..+...+|+..+.+++++.+++++...+.+.+|.+...+|..++......
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g 661 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNG 661 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcC
Confidence 356677999999999999999999999999999999999999999999999999999999998876654
No 119
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=94.76 E-value=0.44 Score=40.74 Aligned_cols=99 Identities=15% Similarity=0.213 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q 029304 77 EEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRM 156 (195)
Q Consensus 77 ~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 156 (195)
..-+..+|...|.+.+|.+++.+-..++...... .....+..+|+..+..+++.+...+++.+......+. ++..+
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~-l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~ 210 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQ-LSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFL 210 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHHh-hhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHH
Confidence 3557888899999999999999998888774333 3345788888888888999999999999988775443 66666
Q ss_pred HHhhcCCCCcceeHHHHHHHHHcC
Q 029304 157 IRGVDCDGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 157 ~~~~d~~~~g~i~~~eF~~~l~~~ 180 (195)
|..+-.+ .+.++.+++..++...
T Consensus 211 f~~~s~~-~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 211 FVQYSHG-KEYLSTDDLLRFLEEE 233 (746)
T ss_pred HHHHhCC-CCccCHHHHHHHHHHh
Confidence 6666543 5666666666666554
No 120
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.75 E-value=0.24 Score=34.22 Aligned_cols=52 Identities=15% Similarity=0.337 Sum_probs=29.3
Q ss_pred CCCCcccHHHHHHHHHHhC---CCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHH
Q 029304 127 DGNGSITAEELHQVLRSLG---DDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMT 178 (195)
Q Consensus 127 ~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 178 (195)
.+...++...|..+|+..+ ..++...++-+|..+.......|+|++|...|.
T Consensus 14 ~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 14 KNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp STSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred CccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 3444566666666666654 245666666666666555555566666666554
No 121
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.17 E-value=0.24 Score=42.45 Aligned_cols=66 Identities=27% Similarity=0.374 Sum_probs=56.3
Q ss_pred HhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 39 PDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 39 ~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
...-+++.+|..+|+...|+|+--.-+.+|... .++...+..||..-|.++||.++-+||+-.+..
T Consensus 192 ~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS--~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 192 HNKLKYRQLFNALDKTRSGYLSGQQARSALGQS--GLPQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred hhhhHHHHHhhhcccccccccccHHHHHHHHhc--CCchhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 344577899999999999999999999988644 467788999999999999999999999887654
No 122
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=93.83 E-value=0.13 Score=46.76 Aligned_cols=60 Identities=22% Similarity=0.484 Sum_probs=50.9
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 46 QVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 46 ~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
..|+.+|+++.|.|++.+|.+++..- ...+..+++-++.-...+.+..++|++|+.-++.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 35788999999999999999999753 2457788999998888899999999999987653
No 123
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=93.75 E-value=0.6 Score=40.48 Aligned_cols=149 Identities=18% Similarity=0.193 Sum_probs=93.7
Q ss_pred CCCChHhHH-HHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHH-HHHHHHHHccCCCCceeHHHHHHHHhhcCCcH
Q 029304 34 NNVIIPDVH-ELRQVFNKFDANGDGKISASELGSILTSLGHAATEEE-LQKMVREIDADGDGFVDFDEFVELNTKGVDSA 111 (195)
Q Consensus 34 ~~l~~~~~~-~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~-~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~ 111 (195)
...++-+|. .+++.+...|......++..+++..+...++.++... +..-|-.. ....+.++|.+|..+...++...
T Consensus 135 ~a~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted-~~~k~dlsf~~f~~ly~~lmfs~ 213 (1267)
T KOG1264|consen 135 NAPTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTED-GARKDDLSFEQFHLLYKKLMFSQ 213 (1267)
T ss_pred cCCChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHh-hhccccccHHHHHHHHHHHhhcc
Confidence 345666666 5678888888877788999999999987766665533 22333332 33457799999998888765443
Q ss_pred HHHHHHH--HHH--HhhcCCCCCcccHHHHHHHHHHhCCCCC---HHHHHHHHHhhcCC-----CCcceeHHHHHHHHHc
Q 029304 112 EVMENLK--DAF--SVYDIDGNGSITAEELHQVLRSLGDDCT---LAECRRMIRGVDCD-----GDGTIDFEEFKVMMTA 179 (195)
Q Consensus 112 ~~~~~~~--~~f--~~~D~~~~g~i~~~e~~~~l~~~~~~~~---~~~~~~~~~~~d~~-----~~g~i~~~eF~~~l~~ 179 (195)
.....+. ..| ..-+...--.|.+.+|.++|........ -..++.++..|-.| ..-.+..+||+.++.+
T Consensus 214 ~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFS 293 (1267)
T KOG1264|consen 214 QKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFS 293 (1267)
T ss_pred chhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhh
Confidence 3221111 111 1112222257999999999976432211 12455566665433 3446999999999988
Q ss_pred CCCc
Q 029304 180 GSRY 183 (195)
Q Consensus 180 ~~~~ 183 (195)
..+.
T Consensus 294 reNs 297 (1267)
T KOG1264|consen 294 RENS 297 (1267)
T ss_pred cccc
Confidence 7654
No 124
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=93.62 E-value=0.18 Score=42.23 Aligned_cols=78 Identities=23% Similarity=0.256 Sum_probs=54.1
Q ss_pred eeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHH
Q 029304 95 VDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEF 173 (195)
Q Consensus 95 i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 173 (195)
|+|..|...+.....-......+..+|..+|.+++|.|++.++...|..+-..-.-+.+.-+|+.++.+.+ ..+.++-
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 45555555555433222334568899999999999999999999999877443333556777888887776 6665554
No 125
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=93.45 E-value=0.046 Score=41.84 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=25.7
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 45 RQVFNKFDANGDGKISASELGSILTSL-GHAATEEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 45 ~~~F~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
.=.|..+|.|+++.|...|++.+=.-+ ...-.......+++.+|.|++..|++.||+..+..
T Consensus 336 ~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 336 HWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 334555555555555554433221110 11112233444444445555555555555444443
No 126
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=93.28 E-value=0.11 Score=39.81 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=51.1
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcCCCc
Q 029304 116 NLKDAFSVYDIDGNGSITAEELHQVLRSLG-DDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAGSRY 183 (195)
Q Consensus 116 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~ 183 (195)
.+.--|..+|.|+++.|...|++.+=+-+- ..-.......+++..|.|+|..|+++|+...|...++.
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~~ 402 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKER 402 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcccccc
Confidence 455568999999999999998654433221 11122456778999999999999999999999888764
No 127
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=92.93 E-value=0.23 Score=37.91 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=14.0
Q ss_pred HHHHHhhcCCCCcceeHHHHHHH
Q 029304 154 RRMIRGVDCDGDGTIDFEEFKVM 176 (195)
Q Consensus 154 ~~~~~~~d~~~~g~i~~~eF~~~ 176 (195)
..+++.+|+|.|.-|++++|+.-
T Consensus 299 EHVMk~vDtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 299 EHVMKQVDTNQDRLVTLEEFLND 321 (442)
T ss_pred HHHHHhcccchhhhhhHHHHHhh
Confidence 34566666666666666666654
No 128
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=92.75 E-value=0.13 Score=30.33 Aligned_cols=54 Identities=24% Similarity=0.354 Sum_probs=38.1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCC-------CCcceeHHHHHHH
Q 029304 115 ENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCD-------GDGTIDFEEFKVM 176 (195)
Q Consensus 115 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-------~~g~i~~~eF~~~ 176 (195)
+.+..+|+.+ .+++++|+.+||++.|. +++++.+...+... ..|.++|..|...
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~-------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLT-------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcC-------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 4788899999 78899999999998863 23445555554332 2367999988753
No 129
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.55 E-value=0.21 Score=43.94 Aligned_cols=136 Identities=21% Similarity=0.309 Sum_probs=105.5
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCC------------
Q 029304 42 HELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVD------------ 109 (195)
Q Consensus 42 ~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~------------ 109 (195)
..+..+|+..|..++|.|+..+....+... .+....+-++|...|..+.|.++...|...+.....
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s--~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~~~ 88 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKS--GLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAKKV 88 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhcc--ccchhhhhccccccccccCCccccccccccchHhhhhhcccCcCcccc
Confidence 567889999999999999999999888744 468888999999999999899988888775443210
Q ss_pred -----------------------------------cHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHH
Q 029304 110 -----------------------------------SAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECR 154 (195)
Q Consensus 110 -----------------------------------~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~ 154 (195)
.......+..+|..+..+ .|.++-...+.++..-+ +..+.+-
T Consensus 89 ~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~--Lp~~~l~ 165 (847)
T KOG0998|consen 89 LPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK--LPSDVLG 165 (847)
T ss_pred ccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC--CChhhhc
Confidence 001123566678887654 88899888888886544 5556777
Q ss_pred HHHHhhcCCCCcceeHHHHHHHHHcCCC
Q 029304 155 RMIRGVDCDGDGTIDFEEFKVMMTAGSR 182 (195)
Q Consensus 155 ~~~~~~d~~~~g~i~~~eF~~~l~~~~~ 182 (195)
.++...|.+.+|.++..+|...+.....
T Consensus 166 ~iw~l~d~d~~g~Ld~~ef~~am~l~~~ 193 (847)
T KOG0998|consen 166 RIWELSDIDKDGNLDRDEFAVAMHLIND 193 (847)
T ss_pred cccccccccccCCCChhhhhhhhhHHHH
Confidence 8999999999999999999987665543
No 130
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=92.34 E-value=0.29 Score=44.76 Aligned_cols=62 Identities=24% Similarity=0.484 Sum_probs=52.5
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcCC
Q 029304 119 DAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAGS 181 (195)
Q Consensus 119 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 181 (195)
..|+.+|.+|.|.|+..+|...+..- ...+..+++-++.....|.+..++|++|+.-+....
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfhepa 4122 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEPA 4122 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhcCch
Confidence 35888999999999999999998743 356778889999999999999999999998765543
No 131
>PLN02952 phosphoinositide phospholipase C
Probab=91.89 E-value=1.7 Score=36.80 Aligned_cols=87 Identities=7% Similarity=0.108 Sum_probs=58.9
Q ss_pred CCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcH-HHHHHHHHHHHhh----c--
Q 029304 55 GDGKISASELGSILTSLGH--AATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSA-EVMENLKDAFSVY----D-- 125 (195)
Q Consensus 55 ~~g~l~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~-~~~~~~~~~f~~~----D-- 125 (195)
+.|.+++++|..+.+.+-. .....++..+|..+..+ .+.++.++|..++....... ........++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 4689999999888776632 34688999999999654 36799999999998755432 1122233333222 1
Q ss_pred -CCCCCcccHHHHHHHHH
Q 029304 126 -IDGNGSITAEELHQVLR 142 (195)
Q Consensus 126 -~~~~g~i~~~e~~~~l~ 142 (195)
..+.+.++++.|..+|.
T Consensus 92 ~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccccCcCHHHHHHHHc
Confidence 12345689999998885
No 132
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=91.57 E-value=2.3 Score=26.91 Aligned_cols=83 Identities=24% Similarity=0.283 Sum_probs=55.1
Q ss_pred CCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcc
Q 029304 55 GDGKISASELGSILTSL--GHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSI 132 (195)
Q Consensus 55 ~~g~l~~~e~~~~l~~~--~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 132 (195)
.||.++..|...+-.-+ .+.++..+...++..+........++.+|...+............+..++...- -||.+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~--ADG~~ 89 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAY--ADGEL 89 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--hcCCC
Confidence 37888888766654432 135677888888888776666668889998887764434444455666666663 56778
Q ss_pred cHHHHHH
Q 029304 133 TAEELHQ 139 (195)
Q Consensus 133 ~~~e~~~ 139 (195)
+..|-.-
T Consensus 90 ~~~E~~~ 96 (104)
T cd07313 90 DEYEEHL 96 (104)
T ss_pred CHHHHHH
Confidence 8777543
No 133
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=91.24 E-value=0.24 Score=32.06 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcCC
Q 029304 147 DCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAGS 181 (195)
Q Consensus 147 ~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 181 (195)
.++|++++.++..+-.|..|.|.|.+|+.-+....
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~e~ 37 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSSEK 37 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT----
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHccccc
Confidence 37899999999999999999999999999887553
No 134
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=89.89 E-value=2.1 Score=27.03 Aligned_cols=61 Identities=20% Similarity=0.324 Sum_probs=30.9
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHcc---CCCCceeHHHHHHHHhh
Q 029304 41 VHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDA---DGDGFVDFDEFVELNTK 106 (195)
Q Consensus 41 ~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~---~~~~~i~~~eF~~~~~~ 106 (195)
...+.+.|..+.. +|.|+..+|..++ |..-+.+.+..||..+-. -..+.|+.+|...++..
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQ 92 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHH
Confidence 4566666666654 6677777777665 333455555555555411 11344666655555443
No 135
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=87.99 E-value=0.33 Score=28.57 Aligned_cols=53 Identities=19% Similarity=0.377 Sum_probs=36.4
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccC-------CCCceeHHHHHH
Q 029304 42 HELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDAD-------GDGFVDFDEFVE 102 (195)
Q Consensus 42 ~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~-------~~~~i~~~eF~~ 102 (195)
.++...|+.+ .++.++|+.++++..|. .+.++.+...+.+- ..|.++|..|+.
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~-------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLT-------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcC-------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 4568889999 88899999999999863 22335555544322 236789998864
No 136
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=87.79 E-value=0.52 Score=30.59 Aligned_cols=33 Identities=18% Similarity=0.446 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 74 AATEEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 74 ~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
.+++++++.+|..+-.|..|+|.|.+|+.-+..
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 368899999999999999999999999987765
No 137
>PLN02222 phosphoinositide phospholipase C 2
Probab=87.23 E-value=3 Score=35.24 Aligned_cols=64 Identities=19% Similarity=0.358 Sum_probs=46.5
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhhcC-CCCcceeHHHHHHHHHcC
Q 029304 115 ENLKDAFSVYDIDGNGSITAEELHQVLRSLGD--DCTLAECRRMIRGVDC-DGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 115 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~g~i~~~eF~~~l~~~ 180 (195)
..+..+|..+.. ++.++.++|..+|..... ..+.+.+..++..+.. ...+.++++.|..+|.+.
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 377778887753 468999999998887643 3466777778777532 245679999999999875
No 138
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.43 E-value=8.1 Score=26.19 Aligned_cols=94 Identities=19% Similarity=0.323 Sum_probs=67.4
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHH--HcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHh
Q 029304 46 QVFNKFDANGDGKISASELGSILT--SLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSV 123 (195)
Q Consensus 46 ~~F~~~d~~~~g~l~~~e~~~~l~--~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~ 123 (195)
-+|.-.. -+|.++..|...... .-.+.++..++..++.....-+...+++-.|-..+...+......+.+...++.
T Consensus 34 Llf~Vm~--ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mweI 111 (148)
T COG4103 34 LLFHVME--ADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWEI 111 (148)
T ss_pred HHHHHHh--cccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5566554 456777766544322 235678899999999888777777899999999888767766666777777877
Q ss_pred hcCCCCCcccHHHHHHHHHH
Q 029304 124 YDIDGNGSITAEELHQVLRS 143 (195)
Q Consensus 124 ~D~~~~g~i~~~e~~~~l~~ 143 (195)
.- .||.++..|-.-+++.
T Consensus 112 a~--ADg~l~e~Ed~vi~Rv 129 (148)
T COG4103 112 AY--ADGELDESEDHVIWRV 129 (148)
T ss_pred HH--ccccccHHHHHHHHHH
Confidence 74 5677888876665554
No 139
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=86.36 E-value=2.5 Score=37.23 Aligned_cols=68 Identities=24% Similarity=0.254 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCH-----HHHHHHHHhhcCCCCcceeHHHHHHHHHcCC
Q 029304 114 MENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTL-----AECRRMIRGVDCDGDGTIDFEEFKVMMTAGS 181 (195)
Q Consensus 114 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 181 (195)
...++..|..++....|.++.++|...+..+|....+ .++..++...+.+.-|.+++.+|...|....
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY 818 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh
Confidence 3578889999999999999999999999999977663 2334444445556668999999999887654
No 140
>PLN02230 phosphoinositide phospholipase C 4
Probab=85.54 E-value=5.3 Score=33.96 Aligned_cols=65 Identities=17% Similarity=0.390 Sum_probs=46.9
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC---CCCHHHHHHHHHhhcC-------CCCcceeHHHHHHHHHcC
Q 029304 115 ENLKDAFSVYDIDGNGSITAEELHQVLRSLGD---DCTLAECRRMIRGVDC-------DGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 115 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~-------~~~g~i~~~eF~~~l~~~ 180 (195)
..+..+|..+..+ .+.++.++|..+|..... ..+.+.+..++..+.. -..+.++++.|..+|.+.
T Consensus 29 ~ei~~lf~~~s~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 29 ADVRDLFEKYADG-DAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred HHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 4788899888543 379999999999988752 2355666677665421 134569999999999875
No 141
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=85.53 E-value=1.7 Score=37.33 Aligned_cols=143 Identities=13% Similarity=0.100 Sum_probs=90.0
Q ss_pred HhHHHHHHHhhhhcCCCCC-cccHHHHHHHHH--------HcCCCCC-----HHHHHHHHHHHccCCCCceeHHHHHHHH
Q 029304 39 PDVHELRQVFNKFDANGDG-KISASELGSILT--------SLGHAAT-----EEELQKMVREIDADGDGFVDFDEFVELN 104 (195)
Q Consensus 39 ~~~~~~~~~F~~~d~~~~g-~l~~~e~~~~l~--------~~~~~~~-----~~~~~~l~~~~d~~~~~~i~~~eF~~~~ 104 (195)
-...-+..+|..++..++. .+...+...+|- +.+.-.. .-.+..+++.||+..+|.|..-+|.-.+
T Consensus 417 v~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~ 496 (966)
T KOG4286|consen 417 LSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGI 496 (966)
T ss_pred ccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhH
Confidence 3445556777777765433 333333333322 2222111 1246788889999999999988888777
Q ss_pred hhcCCcHHHHHHHHHHHHhhcCCCCCcccHHH-------HHHHHHHh------CCCCCHHHHHHHHHhhcCCCCcceeHH
Q 029304 105 TKGVDSAEVMENLKDAFSVYDIDGNGSITAEE-------LHQVLRSL------GDDCTLAECRRMIRGVDCDGDGTIDFE 171 (195)
Q Consensus 105 ~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e-------~~~~l~~~------~~~~~~~~~~~~~~~~d~~~~g~i~~~ 171 (195)
..+. ....++.+..+|+.+-.++...+ ... +.++.+.+ |...-+.-++.+|... ++.-.|...
T Consensus 497 i~lc-k~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNvepsvrsCF~~v--~~~pei~~~ 572 (966)
T KOG4286|consen 497 ISLC-KAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNIEPSVRSCFQFV--NNKPEIEAA 572 (966)
T ss_pred HHHh-cchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCCChHHHHHHHhc--CCCCcchHH
Confidence 7633 34456788899999976655443 333 34444433 4444456778888844 455579999
Q ss_pred HHHHHHHcCCCccc
Q 029304 172 EFKVMMTAGSRYEF 185 (195)
Q Consensus 172 eF~~~l~~~~~~~~ 185 (195)
.|..++...++...
T Consensus 573 ~f~dw~~~epqsmV 586 (966)
T KOG4286|consen 573 LFLDWMRLEPQSMV 586 (966)
T ss_pred HHHHHhccCcchhh
Confidence 99999998887643
No 142
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=85.38 E-value=7.5 Score=30.02 Aligned_cols=83 Identities=20% Similarity=0.234 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHc-CCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCC------c------HHHHH---HHHHHHHh
Q 029304 60 SASELGSILTSL-GHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVD------S------AEVME---NLKDAFSV 123 (195)
Q Consensus 60 ~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~------~------~~~~~---~~~~~f~~ 123 (195)
+.+.++.+.... |+..+.-.-..+|...|.|++|.++-.+.-.++...+. . ...++ --..+.+.
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~ 304 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQ 304 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 445555555443 23333333344555556666666655555444443210 0 00011 22345677
Q ss_pred hcCCCCCcccHHHHHHHHH
Q 029304 124 YDIDGNGSITAEELHQVLR 142 (195)
Q Consensus 124 ~D~~~~g~i~~~e~~~~l~ 142 (195)
+|.|.|..|+.+||...-.
T Consensus 305 vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 305 VDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred cccchhhhhhHHHHHhhhh
Confidence 7777777777777765543
No 143
>PLN02228 Phosphoinositide phospholipase C
Probab=85.34 E-value=5.2 Score=33.77 Aligned_cols=64 Identities=17% Similarity=0.347 Sum_probs=42.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhhcCC----CCcceeHHHHHHHHHcC
Q 029304 115 ENLKDAFSVYDIDGNGSITAEELHQVLRSLGD--DCTLAECRRMIRGVDCD----GDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 115 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~l~~~ 180 (195)
..+..+|..+-. ++.++.++|..+|..... ..+.+.+..++..+... ..|.++++.|..+|.+.
T Consensus 24 ~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 24 VSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred HHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 466777777643 356888888887776532 23445667777776532 34568888888888764
No 144
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=84.52 E-value=3.5 Score=34.62 Aligned_cols=69 Identities=19% Similarity=0.327 Sum_probs=52.3
Q ss_pred CCCCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCC----CHHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 32 NNNNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAA----TEEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 32 ~~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~----~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
....|++.-++-+..+|..+|.++||-++..++..++....... ...+. --.+..|.++|.-|++.+..
T Consensus 305 ~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~------t~~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 305 QSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDS------TVKNERGWLTLNGFLSQWSL 377 (625)
T ss_pred cceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccccc------ceecccceeehhhHHHHHHH
Confidence 34578889999999999999999999999999999998764332 00000 11235788999999987775
No 145
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.67 E-value=1.9 Score=33.96 Aligned_cols=64 Identities=23% Similarity=0.441 Sum_probs=49.4
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH-HccCCCCceeHHHHHHHHh
Q 029304 42 HELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVRE-IDADGDGFVDFDEFVELNT 105 (195)
Q Consensus 42 ~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~-~d~~~~~~i~~~eF~~~~~ 105 (195)
..+++.|+.+|+.++|+|+-+-+..++..++...++...-.+.+. .++..-|.|-..+|+..+.
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~ 373 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFF 373 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccccc
Confidence 577999999999999999999999999998866666665555544 4677777776666655443
No 146
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=75.68 E-value=7.9 Score=25.86 Aligned_cols=81 Identities=20% Similarity=0.305 Sum_probs=49.3
Q ss_pred CCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcc
Q 029304 55 GDGKISASELGSILTSL--GHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSI 132 (195)
Q Consensus 55 ~~g~l~~~e~~~~l~~~--~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 132 (195)
-||.++.+|...+..-+ ...++..+...+...++.-....+++.+|+..+............+..++..... ||.+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~A--DG~~ 113 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYA--DGEI 113 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTC--TTC-
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhc--CCCC
Confidence 58899998887765544 3345566666776666544444678888887777655544445567777777754 5666
Q ss_pred cHHHH
Q 029304 133 TAEEL 137 (195)
Q Consensus 133 ~~~e~ 137 (195)
+..|-
T Consensus 114 ~~~E~ 118 (140)
T PF05099_consen 114 SPEEQ 118 (140)
T ss_dssp SCCHH
T ss_pred CHHHH
Confidence 66553
No 147
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=75.01 E-value=18 Score=22.88 Aligned_cols=62 Identities=24% Similarity=0.274 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhc---CCCCCcccHHHHHHHHHHh
Q 029304 77 EEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYD---IDGNGSITAEELHQVLRSL 144 (195)
Q Consensus 77 ~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D---~~~~g~i~~~e~~~~l~~~ 144 (195)
-..++.-|..+.. +|.+....|-.++... ... +-..++|..+- .-..+.|+.+|++.++..+
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CIGM~-dSk---eFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECIGMK-DSK---EFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHHT---S-H---HHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhcCCc-ccH---HHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 4556666666655 7788888888777652 222 23334443332 1234667888777777554
No 148
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=73.54 E-value=12 Score=19.84 Aligned_cols=31 Identities=23% Similarity=0.473 Sum_probs=22.1
Q ss_pred hHHHHHHHhhhhcC--CCCCcccHHHHHHHHHH
Q 029304 40 DVHELRQVFNKFDA--NGDGKISASELGSILTS 70 (195)
Q Consensus 40 ~~~~~~~~F~~~d~--~~~g~l~~~e~~~~l~~ 70 (195)
-+..+..+|..|.. .+...|+..||+.++..
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 34567788888853 34678888888888763
No 149
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=73.24 E-value=10 Score=22.36 Aligned_cols=47 Identities=19% Similarity=0.384 Sum_probs=26.9
Q ss_pred ceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 029304 94 FVDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSL 144 (195)
Q Consensus 94 ~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 144 (195)
-++|...+..+........ ...+...|+.| ..+.|+.+||.+.++..
T Consensus 8 ~~~F~~L~~~l~~~l~~~~-~~~l~~~Y~~~---k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 8 WMPFPMLFSALSKHLPPSK-MDLLQKHYEEF---KKKKISREEFVRKLRQI 54 (70)
T ss_pred cccHHHHHHHHHHHCCHHH-HHHHHHHHHHH---HHCCCCHHHHHHHHHHH
Confidence 3566666666655443332 33444444444 56778888877777765
No 150
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=72.83 E-value=17 Score=21.35 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=24.7
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHH
Q 029304 132 ITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVM 176 (195)
Q Consensus 132 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 176 (195)
++-+++..++...|..++.+++..+++.-+..+--..+-..+..+
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~F 58 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNF 58 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHH
Confidence 344466666666666677777766666654433333333344333
No 151
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=72.42 E-value=11 Score=25.59 Aligned_cols=36 Identities=8% Similarity=0.143 Sum_probs=21.2
Q ss_pred CCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCC
Q 029304 92 DGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDID 127 (195)
Q Consensus 92 ~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~ 127 (195)
.+.|+|+.|..++...+....-.+....+|..|-..
T Consensus 46 ~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 46 EEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp TTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred CCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 457888888888877665554455677778777543
No 152
>PLN02223 phosphoinositide phospholipase C
Probab=71.70 E-value=22 Score=29.88 Aligned_cols=66 Identities=9% Similarity=0.134 Sum_probs=46.4
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHH---HHhC--CCCCHHHHHHHHHhhcCC--------CCcceeHHHHHHHHHcCC
Q 029304 115 ENLKDAFSVYDIDGNGSITAEELHQVL---RSLG--DDCTLAECRRMIRGVDCD--------GDGTIDFEEFKVMMTAGS 181 (195)
Q Consensus 115 ~~~~~~f~~~D~~~~g~i~~~e~~~~l---~~~~--~~~~~~~~~~~~~~~d~~--------~~g~i~~~eF~~~l~~~~ 181 (195)
+.+..+|..+. ++.|.++.+++.+++ .... ...+.++.+.++..+-.. ..+.++++.|..+|.+..
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s~~ 94 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFSTE 94 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcCcc
Confidence 47778888884 567888888888888 3332 345666777777665322 235699999999998853
No 153
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=71.60 E-value=24 Score=22.74 Aligned_cols=54 Identities=22% Similarity=0.392 Sum_probs=43.2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHH
Q 029304 117 LKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKV 175 (195)
Q Consensus 117 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 175 (195)
+.-+|-.++..++...+..+++.+|...|....++.++.++..+. |+ +.+|.+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA 56 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIA 56 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHH
Confidence 344666777778888999999999999999999999999999985 33 5566554
No 154
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.43 E-value=42 Score=25.40 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=45.0
Q ss_pred hHHHHHHHhhhh-cCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhc
Q 029304 40 DVHELRQVFNKF-DANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKG 107 (195)
Q Consensus 40 ~~~~~~~~F~~~-d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~ 107 (195)
....+...|..+ |+..+..+..+-+..++..+|+....-.+.-+-=.++...-+.++.++|+..+...
T Consensus 62 s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l 130 (260)
T KOG3077|consen 62 SEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTAL 130 (260)
T ss_pred cHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHc
Confidence 345666677766 44445688889999999998876554333333333455566788999999866553
No 155
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=70.98 E-value=16 Score=24.79 Aligned_cols=35 Identities=11% Similarity=0.204 Sum_probs=24.5
Q ss_pred CCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhhcCC
Q 029304 129 NGSITAEELHQVLRSL-GDDCTLAECRRMIRGVDCD 163 (195)
Q Consensus 129 ~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~ 163 (195)
.+.|+++.|+.+|+.. ...++++-+.++|..|-..
T Consensus 46 ~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 46 EEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp TTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred CCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 5589999999999986 5678888899999998554
No 156
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=70.86 E-value=22 Score=21.89 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=34.1
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHH
Q 029304 130 GSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVM 176 (195)
Q Consensus 130 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 176 (195)
..||.+||.......+.++++.++..++..+-.+.-...+-++=..+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~l 59 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKL 59 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 45888999999999999999999888888886654444444443333
No 157
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=70.21 E-value=36 Score=28.19 Aligned_cols=61 Identities=21% Similarity=0.273 Sum_probs=45.1
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHH---cc-----CCCCceeHHHHHHHHhh
Q 029304 46 QVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREI---DA-----DGDGFVDFDEFVELNTK 106 (195)
Q Consensus 46 ~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~---d~-----~~~~~i~~~eF~~~~~~ 106 (195)
-+|..+.....+.++...|..+|+++|+.-+..-+...+..+ +. ...+.++.+.|...+..
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 367777555679999999999999999988876666655543 32 23456889999887553
No 158
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=69.86 E-value=23 Score=23.48 Aligned_cols=50 Identities=14% Similarity=0.256 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhhcCC
Q 029304 111 AEVMENLKDAFSVYDIDGNGSITAEELHQVLRSL-GDDCTLAECRRMIRGVDCD 163 (195)
Q Consensus 111 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~ 163 (195)
......+..+|+.|- .+.|+.+.+..++.+. |..++..+++.++..+-.|
T Consensus 33 ~tf~~Kl~~Il~mFl---~~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~~~n 83 (122)
T PF06648_consen 33 ETFLDKLIKILKMFL---NDEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRVYNN 83 (122)
T ss_pred chHHHHHHHHHHHHH---hCCCCHHHHHHHHhcccHhhcCHHHHHHHHHHHHcc
Confidence 344457777888775 4568888888888877 4788888887777776433
No 159
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=68.06 E-value=26 Score=21.59 Aligned_cols=69 Identities=17% Similarity=0.083 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 029304 74 AATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSL 144 (195)
Q Consensus 74 ~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 144 (195)
+++..++...++..-.+ .-.|.+.+|...+...-..... .....+=..+|-..+|+||.-||-.+.+-+
T Consensus 3 rITK~eA~~FW~~~Fg~-r~IVPW~~F~~~L~~~h~~~~~-~~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 3 RITKAEAAEFWKTSFGK-RTIVPWSEFRQALQKVHPISSG-LEAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp --SSHHHHHHHHHHHTT--SEEEHHHHHHHHHHHS--SSH-HHHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred eeccHHHHHHHHHHCCC-CeEeeHHHHHHHHHHhcCCCch-HHHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 34555666666654322 2457777777777654332221 122333455666677777777776555543
No 160
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=67.54 E-value=27 Score=21.74 Aligned_cols=63 Identities=14% Similarity=0.330 Sum_probs=35.7
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHc-------C----CCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhc
Q 029304 42 HELRQVFNKFDANGDGKISASELGSILTSL-------G----HAATEEELQKMVREIDADGDGFVDFDEFVELNTKG 107 (195)
Q Consensus 42 ~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~-------~----~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~ 107 (195)
.+++-+|..+ .|++|.++...|..+|... + +.-.+.-++..|... .....|+-++|+..+...
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 4678889888 8889999999988887742 1 111444555555554 234557777777766653
No 161
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=66.73 E-value=45 Score=27.21 Aligned_cols=75 Identities=19% Similarity=0.284 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHH
Q 029304 74 AATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSLG-DDCTLAE 152 (195)
Q Consensus 74 ~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~ 152 (195)
.+.-+-++.|-+.+|.+.+|.|+.+|=-.++..-+.-..-...-.+.|.. .|..|+++++...+..-. .+++-++
T Consensus 64 klg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~ItVedLWeaW~~Sev~nWT~e~ 139 (575)
T KOG4403|consen 64 KLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKHITVEDLWEAWKESEVHNWTNER 139 (575)
T ss_pred hhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----CccceeHHHHHHHHHhhhhhcchHHH
Confidence 34556678888889999999998877665555432211111122224432 466899999998887643 4555444
No 162
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.59 E-value=15 Score=31.76 Aligned_cols=64 Identities=25% Similarity=0.425 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHh--------CCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHH
Q 029304 114 MENLKDAFSVYDIDGNGSITAEELHQVLRSL--------GDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMT 178 (195)
Q Consensus 114 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~--------~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 178 (195)
+..++..|..+|. ++|.++.+++..++... ....+.+....++...+.++.|.+.++++..++.
T Consensus 17 d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 17 DDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLL 88 (646)
T ss_pred hHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHH
Confidence 3455555555554 55555555555554432 0122223334444445555555444444444433
No 163
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=66.31 E-value=8 Score=16.94 Aligned_cols=16 Identities=50% Similarity=0.879 Sum_probs=10.2
Q ss_pred cCCCCCcccHHHHHHH
Q 029304 52 DANGDGKISASELGSI 67 (195)
Q Consensus 52 d~~~~g~l~~~e~~~~ 67 (195)
|.|++|.|+.-++..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 5677777777776543
No 164
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=65.22 E-value=59 Score=24.75 Aligned_cols=103 Identities=10% Similarity=0.048 Sum_probs=56.7
Q ss_pred CCCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHH--HHHHHHHHHhhcCCCC
Q 029304 54 NGDGKISASELGSILTSL--GHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEV--MENLKDAFSVYDIDGN 129 (195)
Q Consensus 54 ~~~g~l~~~e~~~~l~~~--~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~--~~~~~~~f~~~D~~~~ 129 (195)
..||.|+..|.. +...+ ...++..+-......+........++.+|+..+......... +..+..+|...= -|
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA~--AD 143 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAAF--AD 143 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH--hc
Confidence 469999999987 33332 234566663334444444444558899999887764422211 112244444442 46
Q ss_pred CcccHHHHHHHHHHh-CCCCCHHHHHHHHHh
Q 029304 130 GSITAEELHQVLRSL-GDDCTLAECRRMIRG 159 (195)
Q Consensus 130 g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~ 159 (195)
|.++..|-.-+.+-. ...++..++..+...
T Consensus 144 G~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~ 174 (267)
T PRK09430 144 GSLHPNERQVLYVIAEELGFSRFQFDQLLRM 174 (267)
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 778888743332222 134666666666554
No 165
>PLN02222 phosphoinositide phospholipase C 2
Probab=65.14 E-value=32 Score=29.38 Aligned_cols=63 Identities=19% Similarity=0.374 Sum_probs=46.0
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHHHcc-CCCCceeHHHHHHHHhh
Q 029304 42 HELRQVFNKFDANGDGKISASELGSILTSLGH--AATEEELQKMVREIDA-DGDGFVDFDEFVELNTK 106 (195)
Q Consensus 42 ~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~-~~~~~i~~~eF~~~~~~ 106 (195)
.++..+|..+.. ++.++.++|..+|..... ..+.+.+..|+..+.. ...+.++++.|..++..
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 355666777743 579999999999987643 3467788888887632 23556999999998764
No 166
>PLN02228 Phosphoinositide phospholipase C
Probab=65.10 E-value=45 Score=28.44 Aligned_cols=63 Identities=17% Similarity=0.358 Sum_probs=45.6
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHHHccC----CCCceeHHHHHHHHhh
Q 029304 42 HELRQVFNKFDANGDGKISASELGSILTSLGH--AATEEELQKMVREIDAD----GDGFVDFDEFVELNTK 106 (195)
Q Consensus 42 ~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~~----~~~~i~~~eF~~~~~~ 106 (195)
.++..+|..+.. ++.++.++|..+|..... ..+.+.+..++..+... ..+.++.+.|..++..
T Consensus 24 ~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 24 VSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred HHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 445666777743 368999999999987643 24567788899888643 2367999999988754
No 167
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=63.99 E-value=40 Score=22.43 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=19.8
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 029304 116 NLKDAFSVYDIDGNGSITAEELHQVLRS 143 (195)
Q Consensus 116 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 143 (195)
.+..++..||.+++|.|+.-.|+.++..
T Consensus 98 ~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 98 LLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 5666788889999999999888877753
No 168
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=63.86 E-value=3.8 Score=29.45 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=32.2
Q ss_pred CCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 029304 92 DGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSITAEELHQVL 141 (195)
Q Consensus 92 ~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 141 (195)
+|.+|-.+.+-+-...+. .+......|...|.|+||+|++.|+-..+
T Consensus 202 d~~~sh~el~pl~ap~ip---me~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 202 DGYLSHTELAPLRAPLIP---MEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred cccccccccccccCCccc---HHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 677777777665444332 24467778888888888888888876554
No 169
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=63.74 E-value=32 Score=21.17 Aligned_cols=68 Identities=13% Similarity=0.194 Sum_probs=45.2
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhc--CCcHHHHHHHHHHHHhh
Q 029304 57 GKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKG--VDSAEVMENLKDAFSVY 124 (195)
Q Consensus 57 g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~--~~~~~~~~~~~~~f~~~ 124 (195)
..|+.+||..+-+..+..++..++..+...+..+.-...+-++=..++... ...+.....+..+|..|
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFEQF 82 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999998865554444444444443321 22333344555555543
No 170
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=63.23 E-value=16 Score=22.98 Aligned_cols=26 Identities=4% Similarity=0.065 Sum_probs=12.3
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHH
Q 029304 118 KDAFSVYDIDGNGSITAEELHQVLRS 143 (195)
Q Consensus 118 ~~~f~~~D~~~~g~i~~~e~~~~l~~ 143 (195)
..++..+........+..+|...+..
T Consensus 40 ~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 40 AELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 33333333334444556666555543
No 171
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=63.22 E-value=27 Score=22.44 Aligned_cols=20 Identities=15% Similarity=0.459 Sum_probs=12.6
Q ss_pred HccCCCCceeHHHHHHHHhh
Q 029304 87 IDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 87 ~d~~~~~~i~~~eF~~~~~~ 106 (195)
+|...+..|+.++...++..
T Consensus 12 YDT~tS~YITLedi~~lV~~ 31 (107)
T TIGR01848 12 YDTETSSYVTLEDIRDLVRE 31 (107)
T ss_pred cCCCccceeeHHHHHHHHHC
Confidence 45566666777776666554
No 172
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=62.23 E-value=52 Score=25.99 Aligned_cols=94 Identities=15% Similarity=0.212 Sum_probs=62.2
Q ss_pred HHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh---------C--CCCC
Q 029304 81 QKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSL---------G--DDCT 149 (195)
Q Consensus 81 ~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~---------~--~~~~ 149 (195)
..++..+|+.+.|.++.-.....+.. ++.+...+.++.+|.... +..|.+..-.+-+++... | ...+
T Consensus 113 aflLaA~ds~~~g~~~vfavkialat-lc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~evlslpT~v~e~psfg~t 190 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALAT-LCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLSLPTAVFEGPSFGYT 190 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhhh-hccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHcCCchhhcCCCcchH
Confidence 44455568888888766554444444 566666789999999885 568888888888888764 1 2234
Q ss_pred HHHHHHHHHhhcCCCCcceeHHHHHHHHHcCC
Q 029304 150 LAECRRMIRGVDCDGDGTIDFEEFKVMMTAGS 181 (195)
Q Consensus 150 ~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~ 181 (195)
+.-++..|.. +.+++++.|+..+..-+
T Consensus 191 e~~a~~cf~q-----qrKv~Ln~fldtl~sdp 217 (434)
T KOG4301|consen 191 ELSARLCFLQ-----QRKVELNQFLDTLMSDP 217 (434)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHhcCC
Confidence 4444444433 35788888888776644
No 173
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.14 E-value=14 Score=29.43 Aligned_cols=62 Identities=26% Similarity=0.361 Sum_probs=43.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH-hhcCCCCcceeHHHHHHH
Q 029304 115 ENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIR-GVDCDGDGTIDFEEFKVM 176 (195)
Q Consensus 115 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~-~~d~~~~g~i~~~eF~~~ 176 (195)
+.++++|+.+|..+.|+|+.+-++.++......+++...-.+.+ .++...-|.|-..+|..-
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~ 371 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGE 371 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccc
Confidence 58999999999999999999999999998875555544333332 234444555555554443
No 174
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=60.40 E-value=16 Score=21.62 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=30.0
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcC
Q 029304 58 KISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGV 108 (195)
Q Consensus 58 ~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~ 108 (195)
.+++..+..++.. .++...+..+...|+.=..+.|+-++|+..+....
T Consensus 8 ~~~F~~L~~~l~~---~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IV 55 (70)
T PF12174_consen 8 WMPFPMLFSALSK---HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIV 55 (70)
T ss_pred cccHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4555555555543 45666666666666555567788888888877643
No 175
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=59.66 E-value=33 Score=21.62 Aligned_cols=81 Identities=19% Similarity=0.172 Sum_probs=41.0
Q ss_pred CCCcccHHHHHHHHHHcC--C---CCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCC
Q 029304 55 GDGKISASELGSILTSLG--H---AATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGN 129 (195)
Q Consensus 55 ~~g~l~~~e~~~~l~~~~--~---~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 129 (195)
.||.++.+|...+...+. . ......+..++...-..- ...+..++...+............+..++.... -|
T Consensus 15 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia~--aD 91 (111)
T cd07176 15 ADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPPELRETAFAVAVDIAA--AD 91 (111)
T ss_pred hccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--cc
Confidence 367777777666655442 1 123344455554432210 023346666666654443333344555555553 45
Q ss_pred CcccHHHHH
Q 029304 130 GSITAEELH 138 (195)
Q Consensus 130 g~i~~~e~~ 138 (195)
|.++..|-.
T Consensus 92 G~~~~~E~~ 100 (111)
T cd07176 92 GEVDPEERA 100 (111)
T ss_pred CCCCHHHHH
Confidence 677776643
No 176
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.37 E-value=18 Score=29.05 Aligned_cols=57 Identities=23% Similarity=0.344 Sum_probs=43.9
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHH
Q 029304 44 LRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVEL 103 (195)
Q Consensus 44 ~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~ 103 (195)
.-++|..+ ..-+|+|+-..-+..+. .-.++...+-.+|+..|.+++|.++-+||.-.
T Consensus 446 yde~fy~l-~p~~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 446 YDEIFYTL-SPVNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred hHhhhhcc-cccCceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 45567766 44578888877777665 33678889999999999999999999999643
No 177
>PLN02230 phosphoinositide phospholipase C 4
Probab=59.06 E-value=67 Score=27.63 Aligned_cols=65 Identities=23% Similarity=0.430 Sum_probs=45.7
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHHHccC-------CCCceeHHHHHHHHhh
Q 029304 41 VHELRQVFNKFDANGDGKISASELGSILTSLGH---AATEEELQKMVREIDAD-------GDGFVDFDEFVELNTK 106 (195)
Q Consensus 41 ~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~---~~~~~~~~~l~~~~d~~-------~~~~i~~~eF~~~~~~ 106 (195)
..++..+|..+. .+++.++.++|..+|..-.. ..+...+..++..+... ..+.++.+.|..++..
T Consensus 28 ~~ei~~lf~~~s-~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 28 VADVRDLFEKYA-DGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred cHHHHHHHHHHh-CCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 356788898884 44489999999999987653 23566777777654221 2346999999987654
No 178
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=58.32 E-value=63 Score=23.32 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=8.5
Q ss_pred CCceeHHHHHHHHhhc
Q 029304 92 DGFVDFDEFVELNTKG 107 (195)
Q Consensus 92 ~~~i~~~eF~~~~~~~ 107 (195)
+|.|+.+++...+...
T Consensus 11 DGTITl~Ds~~~itdt 26 (220)
T COG4359 11 DGTITLNDSNDYITDT 26 (220)
T ss_pred CCceEecchhHHHHhc
Confidence 4555555555555443
No 179
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=58.04 E-value=5.7 Score=26.70 Aligned_cols=51 Identities=20% Similarity=0.369 Sum_probs=36.3
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcCCCccc
Q 029304 131 SITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAGSRYEF 185 (195)
Q Consensus 131 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~~~ 185 (195)
.||++|+++++..+...+ -..+...+-.+.|..|+++....++...+...+
T Consensus 9 ~vTldevr~Av~~f~~~l----p~gi~rt~lv~~d~~iD~~~L~~yL~g~p~q~F 59 (140)
T PF13075_consen 9 DVTLDEVRRAVHQFEEDL----PKGINRTILVNDDQSIDFERLAPYLGGIPDQRF 59 (140)
T ss_pred cccHHHHHHHHHHHHHhC----ccCCceEEEEcCCceecHHHHhhhcCCCCCcce
Confidence 478888888887763222 133455556678889999999999988876543
No 180
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=57.74 E-value=32 Score=19.90 Aligned_cols=33 Identities=15% Similarity=0.365 Sum_probs=29.0
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 029304 129 NGSITAEELHQVLRSLGDDCTLAECRRMIRGVD 161 (195)
Q Consensus 129 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 161 (195)
+-.|+.+.++.++..+|...++..+..++....
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMK 61 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 457999999999999999999999999887653
No 181
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=57.65 E-value=20 Score=29.64 Aligned_cols=64 Identities=16% Similarity=0.148 Sum_probs=47.3
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh---cC----C-CCcceeHHHHHHHHHcCC
Q 029304 118 KDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGV---DC----D-GDGTIDFEEFKVMMTAGS 181 (195)
Q Consensus 118 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~---d~----~-~~g~i~~~eF~~~l~~~~ 181 (195)
..+|..+-....+.+++.-|..+|+..|+.-++..+..+++.+ +. . .-+.++.+.|.+++....
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI 160 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSSI 160 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccch
Confidence 3456666555568999999999999999988888888887665 21 1 233589999999876543
No 182
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=56.68 E-value=19 Score=29.61 Aligned_cols=66 Identities=9% Similarity=0.140 Sum_probs=38.3
Q ss_pred HhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHH--HH--HccCCCCceeHHHHHHHHhh
Q 029304 39 PDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMV--RE--IDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 39 ~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~--~~--~d~~~~~~i~~~eF~~~~~~ 106 (195)
++...+..+| .+....++.-+.+||...+......+. ..+..++ .. +.....+...++..+.++..
T Consensus 286 ~~~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~~p~L~-~~~~~~~~~~~V~hQaK~~~e~~lEkIiAf~aL 355 (445)
T PF13608_consen 286 KEEDEIEHLY-MLCKKHGKLPTEEEFLEYVEEVNPELL-EFAEEMIEEEEVEHQAKTASEKNLEKIIAFVAL 355 (445)
T ss_pred HHHHHHHHHH-HHHHHhCCCCCHHHHHHHHHhcCchHH-HHHHHHhCCCcEEecCCChHHHHHHHHHHHHHH
Confidence 4455677778 776777889999999999985432211 1122222 01 12223445677777766654
No 183
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=56.52 E-value=39 Score=19.80 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=22.3
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCC
Q 029304 59 ISASELGSILTSLGHAATEEELQKMVREIDADG 91 (195)
Q Consensus 59 l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~ 91 (195)
++-+++..++..-+..++..++..+++.-+..+
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~ 46 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKG 46 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCcc
Confidence 344677777777777777777777777654433
No 184
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=54.88 E-value=57 Score=21.26 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=41.4
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHH
Q 029304 118 KDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKV 175 (195)
Q Consensus 118 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 175 (195)
.-+|-.....++..+|.+++..+|...|..+.+..+..+++.+. ..+.++.+.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~-----GKdI~ELIa 58 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE-----GKTPHELIA 58 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 34555555567778999999999999999999999999998884 255666665
No 185
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=54.04 E-value=27 Score=20.15 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=18.0
Q ss_pred HhhcCCCCCcccHHHHHHHHHH
Q 029304 122 SVYDIDGNGSITAEELHQVLRS 143 (195)
Q Consensus 122 ~~~D~~~~g~i~~~e~~~~l~~ 143 (195)
+.+|...+.+|+++++.++.+.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4578888889999999888875
No 186
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=53.95 E-value=33 Score=29.16 Aligned_cols=98 Identities=11% Similarity=0.083 Sum_probs=52.1
Q ss_pred CCCCCCCCCCCcccccccccCCCCCCCCCCCCCCChHh----HHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHH
Q 029304 3 PNGSQHSPHPLITATSAACNSNRSNSSSNNNNNVIIPD----VHELRQVFNKFDANGDGKISASELGSILTSLGHAATEE 78 (195)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~ 78 (195)
+++.+++.|||+..................... +..+ .+.+......-..+.+|..+..+++.+...- ...+.
T Consensus 442 ~ta~e~L~Hpff~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~--~~~~~ 518 (566)
T PLN03225 442 ISAKAALAHPYFDREGLLGLSVMQNLRLQLFRA-TQQDYGEAAAWVVFLMAKSGTEKEGGFTEAQLQELREKE--PKKKG 518 (566)
T ss_pred CCHHHHhCCcCcCCCCccccccccccccccchh-hHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHhhhhc--Ccchh
Confidence 466788999999764333222222211111111 1111 2233444444456677888888888776542 22333
Q ss_pred HHHH--HHHHHccCCCCceeHHHHHHH
Q 029304 79 ELQK--MVREIDADGDGFVDFDEFVEL 103 (195)
Q Consensus 79 ~~~~--l~~~~d~~~~~~i~~~eF~~~ 103 (195)
..++ +....+.+..+..++.+++.-
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (566)
T PLN03225 519 SAQRNALASALRLQRKGVKTVARTVDE 545 (566)
T ss_pred hhhhhhHHHHHhhhhhhhhhhhhhhhc
Confidence 3333 555566677777777776653
No 187
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=53.37 E-value=1.8e+02 Score=26.54 Aligned_cols=90 Identities=14% Similarity=0.238 Sum_probs=60.9
Q ss_pred HccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcC--CCCCcc-----cHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 029304 87 IDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDI--DGNGSI-----TAEELHQVLRSLGDDCTLAECRRMIRG 159 (195)
Q Consensus 87 ~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~--~~~g~i-----~~~e~~~~l~~~~~~~~~~~~~~~~~~ 159 (195)
+..+..|+|.-+.++..+...... ..+..+...... ++...| +++.|..++..+-.+ .+++.||..
T Consensus 157 mqvn~~grip~knI~k~F~~~k~~----KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR---~eie~iF~k 229 (1189)
T KOG1265|consen 157 MQVNFEGRIPVKNIIKTFSADKKE----KRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPR---PEIEEIFRK 229 (1189)
T ss_pred hcccccccccHHHHHHHhhcCCch----hHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCc---hhHHHHHHH
Confidence 356778889888888887763322 244444433321 222344 445566666665322 689999999
Q ss_pred hcCCCCcceeHHHHHHHHHcCCCc
Q 029304 160 VDCDGDGTIDFEEFKVMMTAGSRY 183 (195)
Q Consensus 160 ~d~~~~g~i~~~eF~~~l~~~~~~ 183 (195)
+..+....++.+++..++....+.
T Consensus 230 i~~~~kpylT~~ql~dfln~~QrD 253 (1189)
T KOG1265|consen 230 ISGKKKPYLTKEQLVDFLNKKQRD 253 (1189)
T ss_pred hccCCCccccHHHHHHHHhhhccC
Confidence 998888899999999999987764
No 188
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=53.36 E-value=70 Score=21.85 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=23.3
Q ss_pred HHHHHHhCCCCCHHHHHHHHH----------hhcCCCCcceeHHHHHHH
Q 029304 138 HQVLRSLGDDCTLAECRRMIR----------GVDCDGDGTIDFEEFKVM 176 (195)
Q Consensus 138 ~~~l~~~~~~~~~~~~~~~~~----------~~d~~~~g~i~~~eF~~~ 176 (195)
.+-+.++|..++++++..++. .+-.+..|..+...|..+
T Consensus 96 ~~e~eklGi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~f 144 (145)
T PF13623_consen 96 EQEFEKLGITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQF 144 (145)
T ss_pred HHHHHHhCCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhh
Confidence 334455677777777766661 122346777777776655
No 189
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=51.89 E-value=63 Score=20.90 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=37.7
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 029304 44 LRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREI 87 (195)
Q Consensus 44 ~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 87 (195)
+.-.|-.++.-++...+..+++.+|...|.....+.++.++..+
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel 46 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL 46 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh
Confidence 34456677788888899999999999999999999999999887
No 190
>PF12987 DUF3871: Domain of unknown function, B. Theta Gene description (DUF3871); InterPro: IPR024353 This entry represents proteins of unknown function found primarily in Bacteroides species. The B. thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].
Probab=51.83 E-value=65 Score=24.94 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=44.0
Q ss_pred CCCcccHHHHHHHHHHh---------------CCCCCHHHHHHHHHhhcCC-----CCcceeHHHHHHHHHcCCCc
Q 029304 128 GNGSITAEELHQVLRSL---------------GDDCTLAECRRMIRGVDCD-----GDGTIDFEEFKVMMTAGSRY 183 (195)
Q Consensus 128 ~~g~i~~~e~~~~l~~~---------------~~~~~~~~~~~~~~~~d~~-----~~g~i~~~eF~~~l~~~~~~ 183 (195)
++-.++-++|.+++.++ ...+++.++..+.+.+-.| .+|.|+...|..++...+..
T Consensus 214 ~~t~ltE~QFaQiiGR~RLYQ~LP~~~qk~lP~ll~tD~qiN~vak~Y~~d~nF~~~~~~Is~W~~ynLlT~AnKs 289 (323)
T PF12987_consen 214 GDTSLTEHQFAQIIGRMRLYQALPQGEQKRLPRLLITDSQINTVAKAYYNDENFGRKGGEISMWNFYNLLTGANKS 289 (323)
T ss_pred ccCcccHHHHHHHHhHHHHHHhCCHhHHhhCCceecchHHHHHHHHHHhcCcccccCCCcccHHHHHHHHhcccch
Confidence 57789999999999764 1347888999988887443 37789999999999886543
No 191
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=51.44 E-value=31 Score=21.49 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=21.2
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhhcC-----CCCcceeHHHHHHH
Q 029304 135 EELHQVLRSLGDDCTLAECRRMIRGVDC-----DGDGTIDFEEFKVM 176 (195)
Q Consensus 135 ~e~~~~l~~~~~~~~~~~~~~~~~~~d~-----~~~g~i~~~eF~~~ 176 (195)
+.++.+|+.-|..+...++..++..++. -..|.|+.+.+...
T Consensus 12 ~~Lk~lLk~rGi~v~~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~kv 58 (90)
T PF02337_consen 12 SILKHLLKERGIRVKKKDLINFLSFIDKVCPWFPEEGTLDLDNWKKV 58 (90)
T ss_dssp HHHHHHHHCCT----HHHHHHHHHHHHHHTT-SS--SS-HHHHHHHH
T ss_pred HHHHHHHHHcCeeecHHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHH
Confidence 3455555555667777777776666644 24666777766654
No 192
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=51.11 E-value=44 Score=19.01 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=25.3
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 029304 57 GKISASELGSILTSLGHAATEEELQKMVREI 87 (195)
Q Consensus 57 g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 87 (195)
-.++.+|+...+..++-.++..++-.+|..+
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4678888888888888888888888888765
No 193
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=50.76 E-value=60 Score=20.27 Aligned_cols=80 Identities=15% Similarity=0.336 Sum_probs=41.5
Q ss_pred CCCcccHHHHHHH---HHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcC--CcHHHHHHHHHHHHhhcCCCC
Q 029304 55 GDGKISASELGSI---LTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGV--DSAEVMENLKDAFSVYDIDGN 129 (195)
Q Consensus 55 ~~g~l~~~e~~~~---l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~--~~~~~~~~~~~~f~~~D~~~~ 129 (195)
-||.++..|...+ +..+. ........+...+........++.+|...+.... ........+..++...- -|
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~--AD 87 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMG--LDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAY--AD 87 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--Hc
Confidence 3677777765443 33332 2333334444443322222266777777766532 22233445666666553 46
Q ss_pred CcccHHHHH
Q 029304 130 GSITAEELH 138 (195)
Q Consensus 130 g~i~~~e~~ 138 (195)
|.++..|-.
T Consensus 88 G~~~~~E~~ 96 (106)
T cd07316 88 GELSEAERE 96 (106)
T ss_pred CCCCHHHHH
Confidence 778877654
No 194
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=49.99 E-value=59 Score=20.01 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=46.1
Q ss_pred CCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 35 NVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 35 ~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
.+++.+.+++.+..- ...-.|+..+|+..|..........+...+-..+|..+++.||--||--+...
T Consensus 3 rITK~eA~~FW~~~F----g~r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRl 70 (85)
T PF02761_consen 3 RITKAEAAEFWKTSF----GKRTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRL 70 (85)
T ss_dssp --SSHHHHHHHHHHH----TT-SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred eeccHHHHHHHHHHC----CCCeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHH
Confidence 456666665533221 12357999999999998765556677788888899999999999888766554
No 195
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=49.55 E-value=16 Score=34.95 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=52.4
Q ss_pred CCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCC----HHHHHHHHHHHccCCCCceeHHHHHHHHhh
Q 029304 35 NVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAAT----EEELQKMVREIDADGDGFVDFDEFVELNTK 106 (195)
Q Consensus 35 ~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~----~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~ 106 (195)
.|++.+++.+.++|..+|++.+|+|...++...++.+..++. ... +-+--.+....++.|++.+-+..+..
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 899999999999999999999999999999999997644322 111 11111123446788998887776653
No 196
>PRK00523 hypothetical protein; Provisional
Probab=49.52 E-value=49 Score=19.61 Aligned_cols=33 Identities=18% Similarity=0.347 Sum_probs=29.5
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 029304 128 GNGSITAEELHQVLRSLGDDCTLAECRRMIRGV 160 (195)
Q Consensus 128 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 160 (195)
.+-.|+.+-++.++..+|.+.++..++.+++..
T Consensus 36 ~NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 36 ENPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 356799999999999999999999999998876
No 197
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.28 E-value=54 Score=19.32 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=29.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 029304 128 GNGSITAEELHQVLRSLGDDCTLAECRRMIRGVD 161 (195)
Q Consensus 128 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 161 (195)
.+-.|+.+-++.++..+|.+.++..++++++.+.
T Consensus 35 ~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 35 DNPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred hCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 3457999999999999999999999999988764
No 198
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.79 E-value=85 Score=21.45 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=40.5
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHh--CCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcC
Q 029304 119 DAFSVYDIDGNGSITAEELHQVLRSL--GDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 119 ~~f~~~D~~~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 180 (195)
.+|+.+. -||.++..|...+..-+ ...++..++..++.....-....+++..|...+...
T Consensus 34 Llf~Vm~--ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~ 95 (148)
T COG4103 34 LLFHVME--ADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRH 95 (148)
T ss_pred HHHHHHh--cccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 5666664 46777777755444332 356777788888777776667778888888777654
No 199
>PLN02223 phosphoinositide phospholipase C
Probab=48.30 E-value=1.1e+02 Score=26.02 Aligned_cols=65 Identities=12% Similarity=0.094 Sum_probs=45.8
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHH---HHcC--CCCCHHHHHHHHHHHccCC--------CCceeHHHHHHHHhh
Q 029304 41 VHELRQVFNKFDANGDGKISASELGSIL---TSLG--HAATEEELQKMVREIDADG--------DGFVDFDEFVELNTK 106 (195)
Q Consensus 41 ~~~~~~~F~~~d~~~~g~l~~~e~~~~l---~~~~--~~~~~~~~~~l~~~~d~~~--------~~~i~~~eF~~~~~~ 106 (195)
...++.+|..+ ..++|.++.+.+..++ .... ...+.++++.++..+-... .+.++.+.|..++..
T Consensus 15 p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 15 PDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred cHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 35668889888 4778999999999888 4332 2456677777777653322 255899999988764
No 200
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=46.09 E-value=81 Score=20.44 Aligned_cols=56 Identities=21% Similarity=0.327 Sum_probs=42.8
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHc
Q 029304 119 DAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTA 179 (195)
Q Consensus 119 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 179 (195)
-+|-.....++..+|.+++..+|...|..+.+..+..+++.+. ..+.++.+.-...
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~-----GKdi~eLIa~g~~ 60 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE-----GKDVEELIAAGKE 60 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHHHhHh
Confidence 3455555567778999999999999999999888888888884 2566777665433
No 201
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=45.70 E-value=10 Score=27.37 Aligned_cols=54 Identities=19% Similarity=0.128 Sum_probs=38.7
Q ss_pred hcC-CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHc
Q 029304 124 YDI-DGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTA 179 (195)
Q Consensus 124 ~D~-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 179 (195)
+|. -.||++|..|+.-+-. ....-+..+..+|...|.|+||.|+++||...+.-
T Consensus 196 ld~~p~d~~~sh~el~pl~a--p~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~gi 250 (259)
T KOG4004|consen 196 LDQHPIDGYLSHTELAPLRA--PLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGI 250 (259)
T ss_pred ccCCCccccccccccccccC--CcccHHhhchhhhhcccCCCCCceeHHHhhcccCc
Confidence 344 3689999888754321 22233456778999999999999999999887643
No 202
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=44.27 E-value=37 Score=19.40 Aligned_cols=26 Identities=15% Similarity=0.390 Sum_probs=19.4
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHH
Q 029304 131 SITAEELHQVLRSLGDDCTLAECRRM 156 (195)
Q Consensus 131 ~i~~~e~~~~l~~~~~~~~~~~~~~~ 156 (195)
.|+.++|..+|+.....++.+++..+
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 47888888888888878887776554
No 203
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=44.03 E-value=50 Score=22.34 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=38.3
Q ss_pred CCCcccHHHHHHHHHHhC---------CCCCHHHHHHHHHhhcCCCCcc-eeHHHHHHH
Q 029304 128 GNGSITAEELHQVLRSLG---------DDCTLAECRRMIRGVDCDGDGT-IDFEEFKVM 176 (195)
Q Consensus 128 ~~g~i~~~e~~~~l~~~~---------~~~~~~~~~~~~~~~d~~~~g~-i~~~eF~~~ 176 (195)
|+..||.+||.+.+..-. +.++.++++.+...+.....+. +++.|....
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 778899999999987642 4578889999999888766554 888887664
No 204
>PF13551 HTH_29: Winged helix-turn helix
Probab=43.81 E-value=80 Score=19.73 Aligned_cols=52 Identities=12% Similarity=0.272 Sum_probs=40.7
Q ss_pred CChHhHHHHHHHhhhhcCCCCCcccHHHHHHHH--HHcCCCCCHHHHHHHHHHH
Q 029304 36 VIIPDVHELRQVFNKFDANGDGKISASELGSIL--TSLGHAATEEELQKMVREI 87 (195)
Q Consensus 36 l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l--~~~~~~~~~~~~~~l~~~~ 87 (195)
+++++.+.+.+.+.....++.+..+...+...+ ...+..++..-+..++...
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~~~ 111 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILKRA 111 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHHHC
Confidence 899999999999987755544578899998855 3457888888888887753
No 205
>PF14410 GH-E: HNH/ENDO VII superfamily nuclease with conserved GHE residues
Probab=43.47 E-value=27 Score=20.58 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=23.9
Q ss_pred HhhcCCCCcceeHHHHHHHHHcCCCccccCCCCC
Q 029304 158 RGVDCDGDGTIDFEEFKVMMTAGSRYEFADPVQG 191 (195)
Q Consensus 158 ~~~d~~~~g~i~~~eF~~~l~~~~~~~~~~~~~~ 191 (195)
........+.++..||..++.+...+..+.+...
T Consensus 31 ~~~~~~~~~~~t~ke~~d~~n~p~nyrlE~~s~N 64 (70)
T PF14410_consen 31 RLVGRAEEGGITRKEFLDWYNDPDNYRLEDPSCN 64 (70)
T ss_pred HHHHHHHhcCCCHHHHHHHHhCccceeecCCcCC
Confidence 3333334577999999999998877777666544
No 206
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=43.15 E-value=56 Score=17.74 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=35.5
Q ss_pred CCCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 029304 33 NNNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVRE 86 (195)
Q Consensus 33 ~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~ 86 (195)
-..++++++..|...|.. +.+.+.++...+...+| ++...+...|..
T Consensus 4 r~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~--l~~~~V~~WF~n 50 (57)
T PF00046_consen 4 RTRFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELG--LTERQVKNWFQN 50 (57)
T ss_dssp SSSSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHT--SSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-----hcccccccccccccccc--ccccccccCHHH
Confidence 357889999999999995 56778888888777664 566777766653
No 207
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=43.11 E-value=62 Score=18.68 Aligned_cols=37 Identities=24% Similarity=0.459 Sum_probs=30.1
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCC
Q 029304 55 GDGKISASELGSILTSLGHAATEEELQKMVREIDADG 91 (195)
Q Consensus 55 ~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~ 91 (195)
.++.++...+...+...+..++...+...++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4567888888888888888888888888888887654
No 208
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=42.73 E-value=56 Score=17.66 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=36.8
Q ss_pred CCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 029304 34 NNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREI 87 (195)
Q Consensus 34 ~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 87 (195)
..+++++...|...|.. +.+.+..+...+...+| ++...+...|...
T Consensus 5 ~~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~nr 51 (59)
T cd00086 5 TRFTPEQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQNR 51 (59)
T ss_pred CcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHHH
Confidence 56788999999999997 55888888888888765 5777777777653
No 209
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=42.18 E-value=1.9e+02 Score=23.58 Aligned_cols=116 Identities=14% Similarity=0.116 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHH
Q 029304 75 ATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECR 154 (195)
Q Consensus 75 ~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~ 154 (195)
++..++...|+..- ...-.|.|..|...+...-.... .-....+-..+|...+++|+.-||--+-+-+ .++ ..+.
T Consensus 172 iTKadA~~FWr~~f-g~k~ivPW~~F~q~L~~~Hpi~~-gleAmaLktTIDLtcnd~iS~FEFDvFTRLF-qPw--~tll 246 (563)
T KOG1785|consen 172 ITKADAAEFWRKHF-GKKTIVPWKTFRQALHKVHPISS-GLEAMALKTTIDLTCNDFISNFEFDVFTRLF-QPW--KTLL 246 (563)
T ss_pred eccccHHHHHHHhc-CCcccccHHHHHHHHHhcCCCcc-hhHHHHhhceeccccccceeeehhhhHHHhh-ccH--HHHH
Confidence 44445555555432 22345788888887765321111 1123334456788888999988875443322 111 1222
Q ss_pred HHHHhhcCCCCc---ceeHHHHHHHHHcCCC------ccccCCCCCcccC
Q 029304 155 RMIRGVDCDGDG---TIDFEEFKVMMTAGSR------YEFADPVQGQVAV 195 (195)
Q Consensus 155 ~~~~~~d~~~~g---~i~~~eF~~~l~~~~~------~~~~~~~~~~l~~ 195 (195)
.=|..+...+-| .++|+|..+-+..-.. +..++.+=||+||
T Consensus 247 kNWq~LavtHPGYmAFLTYDEVk~RLqk~~~KpGSYIFRlSCTRlGQWAI 296 (563)
T KOG1785|consen 247 KNWQTLAVTHPGYMAFLTYDEVKARLQKYIKKPGSYIFRLSCTRLGQWAI 296 (563)
T ss_pred HhhhhhhccCCceeEEeeHHHHHHHHHHHhcCCCceEEeeccCcccceeE
Confidence 223444455656 4888887765543322 2345566666654
No 210
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=41.98 E-value=74 Score=25.15 Aligned_cols=43 Identities=21% Similarity=0.317 Sum_probs=26.6
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHH
Q 029304 129 NGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMM 177 (195)
Q Consensus 129 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 177 (195)
.|.||.+|-...+........+..++.+++.++ ||-+||...+
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 566777777666666544455566666776664 5556665543
No 211
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=41.84 E-value=43 Score=20.24 Aligned_cols=34 Identities=15% Similarity=0.418 Sum_probs=17.3
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCC
Q 029304 56 DGKISASELGSILTSLGHAATEEELQKMVREIDADG 91 (195)
Q Consensus 56 ~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~ 91 (195)
.|+|+++++..+|.. ..++...+..++..+...+
T Consensus 19 ~G~lT~~eI~~~L~~--~~~~~e~id~i~~~L~~~g 52 (82)
T PF03979_consen 19 KGYLTYDEINDALPE--DDLDPEQIDEIYDTLEDEG 52 (82)
T ss_dssp HSS-BHHHHHHH-S---S---HHHHHHHHHHHHTT-
T ss_pred cCcCCHHHHHHHcCc--cCCCHHHHHHHHHHHHHCC
Confidence 566777777777652 2356666666666664433
No 212
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=41.68 E-value=55 Score=23.43 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=23.2
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 029304 126 IDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVD 161 (195)
Q Consensus 126 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 161 (195)
.+.+|+++++++...+...+..++.+++..++..-+
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 467899999999888888777788888888877644
No 213
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=41.26 E-value=1.3e+02 Score=21.26 Aligned_cols=40 Identities=8% Similarity=0.222 Sum_probs=30.7
Q ss_pred CCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCC
Q 029304 34 NNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHA 74 (195)
Q Consensus 34 ~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~ 74 (195)
.++.++-..++.++|..+ ..+++-+..+++..++..+.++
T Consensus 6 ~ki~~EiEDEILe~Ya~~-~~~~~D~~l~~Lp~~f~~L~IP 45 (170)
T PF08730_consen 6 EKIPPEIEDEILEAYAEY-TEDEQDMTLKDLPNYFEDLQIP 45 (170)
T ss_pred ccCChHHHHHHHHHHHHh-cCCccceeHHHHHHHHHHcCCC
Confidence 355555555889999988 4448889999999999988664
No 214
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=41.06 E-value=2e+02 Score=23.48 Aligned_cols=105 Identities=13% Similarity=0.136 Sum_probs=68.0
Q ss_pred CCCCCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcH
Q 029304 32 NNNNVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSA 111 (195)
Q Consensus 32 ~~~~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~ 111 (195)
....+|+++...+.+.+ -.....|++..|+++|.......+--++..+-..+|..+++.|+--||--+...+..
T Consensus 168 d~friTKadA~~FWr~~----fg~k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFqP-- 241 (563)
T KOG1785|consen 168 DRFRITKADAAEFWRKH----FGKKTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQP-- 241 (563)
T ss_pred ceeeeccccHHHHHHHh----cCCcccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhcc--
Confidence 34466666666553222 223457899999999988765555567777777789999998877776544333211
Q ss_pred HHHHHHHHHHHhhcCCCCCc---ccHHHHHHHHHHh
Q 029304 112 EVMENLKDAFSVYDIDGNGS---ITAEELHQVLRSL 144 (195)
Q Consensus 112 ~~~~~~~~~f~~~D~~~~g~---i~~~e~~~~l~~~ 144 (195)
-..+.+-+..+-..+-|+ ++++|++.-|...
T Consensus 242 --w~tllkNWq~LavtHPGYmAFLTYDEVk~RLqk~ 275 (563)
T KOG1785|consen 242 --WKTLLKNWQTLAVTHPGYMAFLTYDEVKARLQKY 275 (563)
T ss_pred --HHHHHHhhhhhhccCCceeEEeeHHHHHHHHHHH
Confidence 123444555555666775 7899998888764
No 215
>PRK01844 hypothetical protein; Provisional
Probab=40.93 E-value=78 Score=18.79 Aligned_cols=33 Identities=15% Similarity=0.305 Sum_probs=29.3
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 029304 128 GNGSITAEELHQVLRSLGDDCTLAECRRMIRGV 160 (195)
Q Consensus 128 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 160 (195)
++-.|+.+-++.++..+|.+.++..++.+++..
T Consensus 35 ~NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 35 KNPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345799999999999999999999999998876
No 216
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=39.22 E-value=1.5e+02 Score=21.70 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=7.0
Q ss_pred HHHHHHHHHcCCC
Q 029304 62 SELGSILTSLGHA 74 (195)
Q Consensus 62 ~e~~~~l~~~~~~ 74 (195)
.+|...+..+|+.
T Consensus 61 ~~f~~~~~~lGvd 73 (223)
T PF04157_consen 61 SQFQSMCASLGVD 73 (223)
T ss_dssp HHHHHHHHHHT--
T ss_pred HHHHHHHHHcCCC
Confidence 4666666666654
No 217
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=39.04 E-value=1.1e+02 Score=19.96 Aligned_cols=53 Identities=9% Similarity=0.259 Sum_probs=39.4
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHH
Q 029304 45 RQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVE 102 (195)
Q Consensus 45 ~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~ 102 (195)
.-.|-.+..-++..++.+++..+|...|.......+..+++.+.- .+.++.+.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 344555556677789999999999999999988888888887732 34555544
No 218
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=35.86 E-value=98 Score=18.67 Aligned_cols=43 Identities=26% Similarity=0.369 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHhhcCC-CCcceeHHHHHHHH
Q 029304 133 TAEELHQVLRSLGDDCTLAECRRMIRGVDCD-GDGTIDFEEFKVMM 177 (195)
Q Consensus 133 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-~~g~i~~~eF~~~l 177 (195)
..+++...| .|.+.+.+.+.+.+..++.. --|.++.++|..++
T Consensus 43 ~i~~le~~L--~G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEAL--IGCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHH--TTCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHH--HhcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 366677666 37778888888888888554 34578888888765
No 219
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=35.56 E-value=74 Score=18.67 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=25.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHhh
Q 029304 116 NLKDAFSVYDIDGNGSITAEELHQVLRSL----GDDCTLAECRRMIRGV 160 (195)
Q Consensus 116 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~ 160 (195)
.+..+...++....--+-..+++.++..+ |...+++-++.+|..|
T Consensus 24 ~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 24 HLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 44445555543333335555677777665 5667778888888765
No 220
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=35.43 E-value=89 Score=22.25 Aligned_cols=35 Identities=14% Similarity=0.112 Sum_probs=23.3
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 029304 126 IDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGV 160 (195)
Q Consensus 126 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 160 (195)
-+.+|++.++++...+...+..++.+.+.++...-
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d 62 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESD 62 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcC
Confidence 35678888888877776555556766666665543
No 221
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=33.49 E-value=54 Score=22.61 Aligned_cols=64 Identities=14% Similarity=0.299 Sum_probs=27.6
Q ss_pred HHHHHHhhhhcCCC----CC-cccHHHHHHHHHHcC----CCCCHHHHHHHHHHHccCCCCceeHHHHHHHHh
Q 029304 42 HELRQVFNKFDANG----DG-KISASELGSILTSLG----HAATEEELQKMVREIDADGDGFVDFDEFVELNT 105 (195)
Q Consensus 42 ~~~~~~F~~~d~~~----~g-~l~~~e~~~~l~~~~----~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~ 105 (195)
..+++.|..|..-+ +| .++-..|-.+++..+ ..++.......|..+.--..+.++|++|...+.
T Consensus 12 a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ 84 (180)
T KOG4070|consen 12 AGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALE 84 (180)
T ss_pred hhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHH
Confidence 34455555553333 22 233444555554332 233334444444444333344555555544433
No 222
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=33.40 E-value=1.4e+02 Score=19.50 Aligned_cols=51 Identities=25% Similarity=0.367 Sum_probs=38.8
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHH
Q 029304 120 AFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKV 175 (195)
Q Consensus 120 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 175 (195)
+|-..-..++..+|.+++..+|...|..+.+..+..++..+.. .+.++.+.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 3434444567789999999999999999998888888888842 45666664
No 223
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.12 E-value=2.2e+02 Score=21.69 Aligned_cols=70 Identities=19% Similarity=0.229 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHH-ccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC
Q 029304 75 ATEEELQKMVREI-DADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSLG 145 (195)
Q Consensus 75 ~~~~~~~~l~~~~-d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 145 (195)
.+...+..+|..+ |+..+..|-++-...++...-..+.....+..+++.- ...-|..+.++|..-+..++
T Consensus 61 ~s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~-A~~m~~Fsr~ef~~g~~~l~ 131 (260)
T KOG3077|consen 61 VSEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLG-AATMCEFSREEFLKGMTALG 131 (260)
T ss_pred ccHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhc-cchhhhhhHHHHHHHHHHcC
Confidence 3344444444443 2322234444433334443333333333444444433 34445555555555554444
No 224
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=32.60 E-value=83 Score=24.92 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=43.9
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcC
Q 029304 116 NLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 116 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 180 (195)
.+......+|..+.|.++....+-+|..+-..---+.++.||..+. |.+|.+.+-.|..++...
T Consensus 111 llaflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~ev 174 (434)
T KOG4301|consen 111 LLAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEV 174 (434)
T ss_pred HHHHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH
Confidence 4445567889999999999988888877632222357788888885 667765555555554433
No 225
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=32.45 E-value=1e+02 Score=19.98 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 029304 133 TAEELHQVLRSLGDDCTLAECRRMIRGV 160 (195)
Q Consensus 133 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 160 (195)
+.+|++.++......+++++++.+++.+
T Consensus 80 ~~dElrai~~~~~~~~~~e~l~~ILd~l 107 (112)
T PRK14981 80 TRDELRAIFAKERYTLSPEELDEILDIV 107 (112)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4566666666666666777777666654
No 226
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=31.96 E-value=97 Score=22.18 Aligned_cols=37 Identities=30% Similarity=0.328 Sum_probs=24.1
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Q 029304 52 DANGDGKISASELGSILTSLGHAATEEELQKMVREID 88 (195)
Q Consensus 52 d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 88 (195)
..+.+|+++.+++...+..-+..++.+++..+...-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 3578999999999999887677788888888887644
No 227
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=31.96 E-value=1.4e+02 Score=18.94 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=18.8
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Q 029304 59 ISASELGSILTSLGHAATEEELQKMVREID 88 (195)
Q Consensus 59 l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 88 (195)
++..++..++.-+.-.++++++..+...+-
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~ 49 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELA 49 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHH
Confidence 666666666666666677777776666653
No 228
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=31.73 E-value=2.3e+02 Score=21.44 Aligned_cols=47 Identities=15% Similarity=0.420 Sum_probs=27.9
Q ss_pred CCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 029304 35 NVIIPDVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREI 87 (195)
Q Consensus 35 ~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 87 (195)
.|+..|++.+++++..++. ++|.++..++..-+ .++..-+...++.+
T Consensus 176 tLSySEleAv~~IL~~L~~-~egrlse~eLAerl-----GVSRs~ireAlrkL 222 (251)
T TIGR02787 176 TLSYSELEAVEHIFEELDG-NEGLLVASKIADRV-----GITRSVIVNALRKL 222 (251)
T ss_pred hccHhHHHHHHHHHHHhcc-ccccccHHHHHHHH-----CCCHHHHHHHHHHH
Confidence 4566666677777766632 25666666666554 34555555555554
No 229
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.67 E-value=74 Score=25.80 Aligned_cols=57 Identities=19% Similarity=0.291 Sum_probs=42.4
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHH
Q 029304 116 NLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKV 175 (195)
Q Consensus 116 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 175 (195)
...++|..+.. -+|.|+-..-+.-+- +..+....+-.+|+..|.|+||.++-+||.-
T Consensus 445 ~yde~fy~l~p-~~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 445 TYDEIFYTLSP-VNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred chHhhhhcccc-cCceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 55667766643 467777665554443 3457777889999999999999999999974
No 230
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=31.62 E-value=63 Score=19.19 Aligned_cols=16 Identities=25% Similarity=0.623 Sum_probs=8.6
Q ss_pred CCCcccHHHHHHHHHH
Q 029304 128 GNGSITAEELHQVLRS 143 (195)
Q Consensus 128 ~~g~i~~~e~~~~l~~ 143 (195)
..|.|..+||..++..
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 3455555555555543
No 231
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=31.56 E-value=3.9e+02 Score=24.03 Aligned_cols=102 Identities=14% Similarity=0.087 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHccCCCC-ceeHHHHHHHHhhcC----------C--cHHHHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 029304 75 ATEEELQKMVREIDADGDG-FVDFDEFVELNTKGV----------D--SAEVMENLKDAFSVYDIDGNGSITAEELHQVL 141 (195)
Q Consensus 75 ~~~~~~~~l~~~~d~~~~~-~i~~~eF~~~~~~~~----------~--~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 141 (195)
++..-+..+|...+..+.. ..+..+.+..+.... . .......+..+++.||...+|.|..=+|+-.+
T Consensus 417 v~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~ 496 (966)
T KOG4286|consen 417 LSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGI 496 (966)
T ss_pred ccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhH
Confidence 5667778888888765543 334444444433211 0 11112367778899999999999999999888
Q ss_pred HHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHH
Q 029304 142 RSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMM 177 (195)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 177 (195)
..+.....++.+..+|..+..++.. ++...|--++
T Consensus 497 i~lck~~leek~~ylF~~vA~~~sq-~~q~~l~lLL 531 (966)
T KOG4286|consen 497 ISLCKAHLEDKYRYLFKQVASSTSQ-CDQRRLGLLL 531 (966)
T ss_pred HHHhcchhHHHHHHHHHHHcCchhh-HHHHHHHHHH
Confidence 7776556667788999998655433 3344444433
No 232
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=30.55 E-value=1.3e+02 Score=18.45 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC
Q 029304 74 AATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSLGDD 147 (195)
Q Consensus 74 ~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 147 (195)
.++..-+.+|.+..+...-..--|++....+... .++.+..+-......+--+|+.+|+.-+++..|.+
T Consensus 13 gi~k~~I~RLarr~GvkRIS~d~y~e~~~~l~~~-----l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~ 81 (85)
T cd00076 13 GITKPAIRRLARRGGVKRISGGVYDEVRNVLKSY-----LEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 81 (85)
T ss_pred cCCHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCC
Confidence 4566666666665433222222255555544431 23344555544444566789999999999888754
No 233
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=30.52 E-value=63 Score=15.70 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=8.1
Q ss_pred CCcccHHHHHHHHH
Q 029304 129 NGSITAEELHQVLR 142 (195)
Q Consensus 129 ~g~i~~~e~~~~l~ 142 (195)
.|.|+.+|+..+..
T Consensus 2 ~~~i~~~~~~d~a~ 15 (33)
T PF09373_consen 2 SGTISKEEYLDMAS 15 (33)
T ss_pred CceecHHHHHHHHH
Confidence 35566666665554
No 234
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=30.45 E-value=1.1e+02 Score=18.59 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcC
Q 029304 145 GDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 145 ~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 180 (195)
|..+++...+.+-+.++......|+++|.+.+....
T Consensus 43 gG~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL~~ 78 (82)
T PF11020_consen 43 GGQIPEKVMDSLSKLYKLAKENNVSFEELCVYALGV 78 (82)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 555666666666666666666678888888876543
No 235
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=30.38 E-value=1.5e+02 Score=19.08 Aligned_cols=50 Identities=14% Similarity=0.338 Sum_probs=32.5
Q ss_pred hhhcCCCCCcccHHHHHHHHHH----------cCCCCCHHHHHHHHHHHccCCCCceeHH
Q 029304 49 NKFDANGDGKISASELGSILTS----------LGHAATEEELQKMVREIDADGDGFVDFD 98 (195)
Q Consensus 49 ~~~d~~~~g~l~~~e~~~~l~~----------~~~~~~~~~~~~l~~~~d~~~~~~i~~~ 98 (195)
..||....-+|+.++++.++.. .|-+++...+.+++..-..++...++-.
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~ 69 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTD 69 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHH
Confidence 3578888889999999988873 2445556666666665555444444433
No 236
>PF13310 Virulence_RhuM: Virulence protein RhuM family
Probab=29.44 E-value=1.7e+02 Score=22.28 Aligned_cols=77 Identities=21% Similarity=0.327 Sum_probs=46.9
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcC---CCCCccc
Q 029304 57 GKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDI---DGNGSIT 133 (195)
Q Consensus 57 g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~---~~~g~i~ 133 (195)
|.+...|...+= ..+++.|+..|-+... .-++|.|....-...+.-..+...+..+...-+. .+.|.||
T Consensus 161 g~v~k~Dv~iAK----NYL~e~El~~LNRlVs----~yLD~AE~qA~~~~~mtM~DW~~~LD~fL~fn~~~iL~~aGkIS 232 (260)
T PF13310_consen 161 GRVRKSDVTIAK----NYLNEDELDSLNRLVS----MYLDFAEDQAERRKPMTMKDWIEKLDAFLQFNEREILQGAGKIS 232 (260)
T ss_pred CCCcccchhHHh----ccccHHHHHHHHHHHH----HHHHHHHHHHHccCCCcHHHHHHHHHHHHHhCCCcccCCCChhh
Confidence 677777766552 2567888777777652 3456666554444444444555556655555544 3789999
Q ss_pred HHHHHHHH
Q 029304 134 AEELHQVL 141 (195)
Q Consensus 134 ~~e~~~~l 141 (195)
.++-...-
T Consensus 233 ~e~A~~kA 240 (260)
T PF13310_consen 233 HEQAKEKA 240 (260)
T ss_pred HHHHHHHH
Confidence 88776544
No 237
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=29.35 E-value=1.9e+02 Score=19.72 Aligned_cols=48 Identities=10% Similarity=0.111 Sum_probs=35.3
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCC-----CcceeHHHHHHHHHc
Q 029304 132 ITAEELHQVLRSLGDDCTLAECRRMIRGVDCDG-----DGTIDFEEFKVMMTA 179 (195)
Q Consensus 132 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~-----~g~i~~~eF~~~l~~ 179 (195)
.|.++++.+...+..++|++++..++..++.-. +..|+..-...++..
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~~~~~~~~~~GVs~~~V~el~~~ 79 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGDIPEDQRHEEGVSSGTVMELIRE 79 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhcCccccchhccccHHHHHHHHHH
Confidence 577888888877778899999999999887632 335777655555544
No 238
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=29.24 E-value=1.7e+02 Score=25.96 Aligned_cols=59 Identities=17% Similarity=0.130 Sum_probs=46.6
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHcC
Q 029304 115 ENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTAG 180 (195)
Q Consensus 115 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 180 (195)
.....+|+..-..+.-.+..+++..++ .+++.+..+..++...++.|++..|..++...
T Consensus 404 ~aA~~iF~nv~~p~~~~i~ld~~~~f~-------~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~~ 462 (714)
T KOG4629|consen 404 IAARKIFKNVAKPGVILIDLDDLLRFM-------GDEEAERAFSLFEGASDENITRSSFKEWIVNI 462 (714)
T ss_pred HHHHHHHhccCCCCccchhhhhhhhcC-------CHHHHHHHHHhhhhhcccCccHHHHHHHHHHH
Confidence 466778988887777788887776654 56888999999988777779999999887653
No 239
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=28.75 E-value=1.9e+02 Score=19.47 Aligned_cols=49 Identities=14% Similarity=0.042 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCC
Q 029304 114 MENLKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVDCDG 164 (195)
Q Consensus 114 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 164 (195)
++.+..+-+.+...+-..-+.+.=+.+|+.-| ++++|+++++.......
T Consensus 3 e~li~~A~~FL~~p~V~~sp~~~k~~FL~sKG--Lt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 3 EDLIEQAVKFLQDPKVRNSPLEKKIAFLESKG--LTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHHHHCTTTCCCS-HHHHHHHHHHCT----HHHHHHHHHHHT--S
T ss_pred HHHHHHHHHHhCCcccccCCHHHHHHHHHcCC--CCHHHHHHHHHhcCCcc
Confidence 34555666666555556667778888888876 88999999999986554
No 240
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=28.47 E-value=1.7e+02 Score=18.95 Aligned_cols=53 Identities=25% Similarity=0.431 Sum_probs=39.4
Q ss_pred HHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHH
Q 029304 46 QVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVEL 103 (195)
Q Consensus 46 ~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~ 103 (195)
-.|-.+...++..++.+++..++...|..+....+..+++.+.- .+..+.+..
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~ 57 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAA 57 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHH
Confidence 34555556677789999999999999998888888888887732 345666554
No 241
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.07 E-value=1.4e+02 Score=19.61 Aligned_cols=30 Identities=23% Similarity=0.196 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 029304 132 ITAEELHQVLRSLGDDCTLAECRRMIRGVD 161 (195)
Q Consensus 132 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 161 (195)
-+..|++.++..-+..+++++++.++..++
T Consensus 80 ~t~~ElRsIla~e~~~~s~E~l~~Ildiv~ 109 (114)
T COG1460 80 RTPDELRSILAKERVMLSDEELDKILDIVD 109 (114)
T ss_pred CCHHHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 467789999988888889888888877654
No 242
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=28.02 E-value=1.6e+02 Score=18.43 Aligned_cols=82 Identities=17% Similarity=0.230 Sum_probs=47.5
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHH---HHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcccH
Q 029304 58 KISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEF---VELNTKGVDSAEVMENLKDAFSVYDIDGNGSITA 134 (195)
Q Consensus 58 ~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF---~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~ 134 (195)
.....++...+......++..-+.++.+..... +|+-.-. ...+.. -.......+-......|--+|..
T Consensus 3 ~~~~~~~r~~~~~~~~~Lp~apv~Ri~r~~~~~---Rvs~~A~~~l~~~~e~-----~~~~i~~~A~~~A~ha~RKTV~~ 74 (91)
T COG2036 3 AVGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE---RVSSSAIEELQEALEE-----YLEEIAEDAVELAEHAKRKTVKA 74 (91)
T ss_pred cchHHHHHhhhhhhhhhcCchHHHHHHHHHhHH---HhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCCeecH
Confidence 344556666666666667777777777776544 3332222 222221 11224444445555567778999
Q ss_pred HHHHHHHHHhCCC
Q 029304 135 EELHQVLRSLGDD 147 (195)
Q Consensus 135 ~e~~~~l~~~~~~ 147 (195)
+|+...+...|..
T Consensus 75 ~DI~la~~~~~~~ 87 (91)
T COG2036 75 EDIKLALKRLGRR 87 (91)
T ss_pred HHHHHHHHHhccc
Confidence 9999888877643
No 243
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=28.00 E-value=61 Score=15.59 Aligned_cols=11 Identities=27% Similarity=0.628 Sum_probs=6.4
Q ss_pred ccHHHHHHHHH
Q 029304 132 ITAEELHQVLR 142 (195)
Q Consensus 132 i~~~e~~~~l~ 142 (195)
|+.+||+.++.
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 67777777765
No 244
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.72 E-value=1.9e+02 Score=20.68 Aligned_cols=104 Identities=12% Similarity=0.157 Sum_probs=60.7
Q ss_pred hHHHHHHHhhhhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHH----ccCCCCceeHHHHHHHHhhcCC---c--
Q 029304 40 DVHELRQVFNKFDANGDGKISASELGSILTSLGHAATEEELQKMVREI----DADGDGFVDFDEFVELNTKGVD---S-- 110 (195)
Q Consensus 40 ~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~----d~~~~~~i~~~eF~~~~~~~~~---~-- 110 (195)
....+++.|..||+..--..+.+++..++..-++-.+...+..+.... +.... +|.+|+-.+..... .
T Consensus 51 Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA~~~l~i~~e---sf~~ylW~fv~~~Pi~~~~~ 127 (179)
T TIGR00624 51 KRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQLEQN---DLVEFLWSFVNHQPQPRQRP 127 (179)
T ss_pred hHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHc---cHHHHHHhccCCCCccCCcc
Confidence 345788999999998888888899999988766666655555444422 11111 67777644421110 0
Q ss_pred -----HHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC
Q 029304 111 -----AEVMENLKDAFSVYDIDGNGSITAEELHQVLRSLGD 146 (195)
Q Consensus 111 -----~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 146 (195)
+........+.+.+-+.|-..+...-...+|.+.|.
T Consensus 128 ~~~~~p~~t~~S~~lskdLKkrGfkFvGpt~~ysfmqA~G~ 168 (179)
T TIGR00624 128 TDSEIPSSTPESKAMSKELKKRGFRFVGPTICYALMQATGM 168 (179)
T ss_pred ccccCCCCCHHHHHHHHHHHHcCCeecChHHHHHHHHHHCC
Confidence 011112344444444556666666666666666663
No 245
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=27.56 E-value=2.1e+02 Score=23.09 Aligned_cols=52 Identities=17% Similarity=0.321 Sum_probs=37.8
Q ss_pred CCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 029304 92 DGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSL 144 (195)
Q Consensus 92 ~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 144 (195)
+..+++++++..... .......+....++...|.+++|.....++.+++...
T Consensus 72 ~~~~~l~k~~~~~~~-~~~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~v 123 (427)
T KOG2557|consen 72 DDKMTLEKLVIAKAT-YEKGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVV 123 (427)
T ss_pred CccchHHHHhhHHhh-hccCcccHHHHHHHHHHhhccccccchhHHHHHHHHH
Confidence 345778777655443 3333444577788889999999999999998888764
No 246
>PTZ00015 histone H4; Provisional
Probab=26.75 E-value=1.8e+02 Score=18.64 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC
Q 029304 73 HAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRSLGDD 147 (195)
Q Consensus 73 ~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 147 (195)
..++..-+.+|.+......-...-|++....+... .++.+..+-......+--+|+.+|+..+++..|.+
T Consensus 29 ~gI~k~~IrRLarr~GvkRIS~d~y~e~r~vle~~-----l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr~g~~ 98 (102)
T PTZ00015 29 RGITKGAIRRLARRGGVKRISGDIYEEVRGVLKAF-----LENVVRDSTAYTEYARRKTVTAMDVVYALKRQGRT 98 (102)
T ss_pred cCCCHHHHHHHHHHcCCccchHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCC
Confidence 34555556666665443332333355555444431 13344555444444566789999999998887653
No 247
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=26.57 E-value=1.6e+02 Score=21.05 Aligned_cols=43 Identities=21% Similarity=0.253 Sum_probs=31.8
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHH
Q 029304 53 ANGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFD 98 (195)
Q Consensus 53 ~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ 98 (195)
.|.+|.++.+++...++.-+..++.+.+.++... |..++..+.
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~---d~K~Rf~l~ 70 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVES---DDKGRFEIS 70 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHc---CCCcceEec
Confidence 4789999999999998765566788888877764 334555443
No 248
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=26.11 E-value=1.4e+02 Score=17.06 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=13.0
Q ss_pred ccHHHHHHHHHHhCC----CCCHHHHHHHHH
Q 029304 132 ITAEELHQVLRSLGD----DCTLAECRRMIR 158 (195)
Q Consensus 132 i~~~e~~~~l~~~~~----~~~~~~~~~~~~ 158 (195)
|.++||...+...|. ..+...+..+++
T Consensus 25 I~L~el~~~L~~~g~~~~~~~~~~~l~~~lD 55 (64)
T PF09494_consen 25 INLEELHAWLKASGIGFDRKVDPSKLKEWLD 55 (64)
T ss_pred ccHHHHHHHHHHcCCCccceeCHHHHHHHHH
Confidence 555555555554444 444444444433
No 249
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=25.75 E-value=2.5e+02 Score=19.97 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=21.5
Q ss_pred cCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHhhc
Q 029304 125 DIDGNGSITAEELHQVLRSLG--DDCTLAECRRMIRGVD 161 (195)
Q Consensus 125 D~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d 161 (195)
..+....+|.++|...++... ..++++.+..+++.+.
T Consensus 143 n~~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~ 181 (185)
T cd00171 143 NPNVKKKMTLEDFIKNLRGINDGEDFPREFLKELYDSIK 181 (185)
T ss_pred CcccCCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Confidence 334345566667766666542 3566666666666553
No 250
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=24.96 E-value=2.4e+02 Score=19.49 Aligned_cols=55 Identities=11% Similarity=0.331 Sum_probs=31.8
Q ss_pred HHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 029304 80 LQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSITAEELHQVLRS 143 (195)
Q Consensus 80 ~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 143 (195)
+..++..-+.+.++.|++..|...++..+.. .+..-|-. +...+|..+++..+..
T Consensus 85 Lehllg~~~~~~n~~i~~~~ff~~lQ~~lGd-----WIT~~~Lk----h~n~MSk~Qik~L~~~ 139 (175)
T PF04876_consen 85 LEHLLGGEDDSTNGLIDIGKFFDILQPKLGD-----WITKNFLK----HPNRMSKDQIKTLCEQ 139 (175)
T ss_pred HHHHhcCCcCCcccceeHHHHHHHHHHHhhh-----HHHHHHHh----ccchhhHHHHHHHHHH
Confidence 3333333233456789999999988874322 33333322 3456777777766654
No 251
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=24.81 E-value=1.2e+02 Score=16.02 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=17.0
Q ss_pred cHHHHHHHHHHhCCCCCHHHH
Q 029304 133 TAEELHQVLRSLGDDCTLAEC 153 (195)
Q Consensus 133 ~~~e~~~~l~~~~~~~~~~~~ 153 (195)
+.+++..+.+..|+.++.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 677888888888888887665
No 252
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=24.65 E-value=1.8e+02 Score=17.92 Aligned_cols=17 Identities=0% Similarity=-0.213 Sum_probs=8.2
Q ss_pred ceeHHHHHHHHhhcCCc
Q 029304 94 FVDFDEFVELNTKGVDS 110 (195)
Q Consensus 94 ~i~~~eF~~~~~~~~~~ 110 (195)
.++-.+...++......
T Consensus 39 ~~T~~Qv~~il~~f~fd 55 (95)
T PF14771_consen 39 CFTCAQVKQILSLFSFD 55 (95)
T ss_pred ceeHHHHHHHHHHcCCC
Confidence 35555555555543333
No 253
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=24.21 E-value=78 Score=20.15 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=32.2
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHH---HHHHHhhcCCCCcceeHHHHHHHHHcCCCc
Q 029304 129 NGSITAEELHQVLRSLGDDCTLAEC---RRMIRGVDCDGDGTIDFEEFKVMMTAGSRY 183 (195)
Q Consensus 129 ~g~i~~~e~~~~l~~~~~~~~~~~~---~~~~~~~d~~~~g~i~~~eF~~~l~~~~~~ 183 (195)
...++.+|+..++...|. ++-+ ...++....+....++.++...+|..++..
T Consensus 33 ~~p~s~~eL~~~l~~~g~---~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~L 87 (105)
T cd03035 33 KDGLDAATLERWLAKVGW---ETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSL 87 (105)
T ss_pred cCCCCHHHHHHHHHHhCh---HHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCe
Confidence 345788888888887761 1111 123444443322457889999998888764
No 254
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=23.89 E-value=1.5e+02 Score=18.01 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=18.6
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 029304 131 SITAEELHQVLRSLGDDCTLAECRRMIRG 159 (195)
Q Consensus 131 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 159 (195)
.|+..+++.+.+.+| +++.+++.+-..
T Consensus 8 ~v~~~~wk~~~R~LG--lse~~Id~ie~~ 34 (80)
T cd08313 8 EVPPRRWKEFVRRLG--LSDNEIERVELD 34 (80)
T ss_pred hCCHHHHHHHHHHcC--CCHHHHHHHHHh
Confidence 367778888888877 666666665443
No 255
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=23.66 E-value=2.1e+02 Score=22.33 Aligned_cols=85 Identities=13% Similarity=0.058 Sum_probs=40.5
Q ss_pred HHHHHHHhhhhcC--CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHH
Q 029304 41 VHELRQVFNKFDA--NGDGKISASELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLK 118 (195)
Q Consensus 41 ~~~~~~~F~~~d~--~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~ 118 (195)
++.+...|...+. +..-..+..+-.+.............+..-+..+|++.+-.+.=.-|+.++..-+.-...+..|.
T Consensus 40 vA~~~~~~~~~~d~p~~~p~~t~~e~~er~~~~k~e~~~~~~~~~l~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLr 119 (335)
T KOG0113|consen 40 VAQYLSTFEDPKDAPPKFPVETPEEPLERGRREKTEKIPHKLERRLKLWDPNNDPNAIGDPYKTLFVARLNYDTSESKLR 119 (335)
T ss_pred HHHHHHhhcCcccCCCcCcccchhhHHHhhhhhhhhhhHHHHHHHHHhcCCCCCCcccCCccceeeeeeccccccHHHHH
Confidence 4555555554432 22223334444444443333334444666666666666554444445444433333334455666
Q ss_pred HHHHhhc
Q 029304 119 DAFSVYD 125 (195)
Q Consensus 119 ~~f~~~D 125 (195)
..|..|-
T Consensus 120 reF~~YG 126 (335)
T KOG0113|consen 120 REFEKYG 126 (335)
T ss_pred HHHHhcC
Confidence 6666553
No 256
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=23.63 E-value=1.3e+02 Score=16.59 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=16.8
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q 029304 128 GNGSITAEELHQVLRSLGDDCTLAECRRMI 157 (195)
Q Consensus 128 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 157 (195)
..|.|+.+||..=+.....--+-.++..++
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~ 49 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALF 49 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 467777777766665543333444444444
No 257
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=23.60 E-value=2.9e+02 Score=20.03 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=16.8
Q ss_pred CCCCcccHHHHHHHHHHhCCCCC
Q 029304 127 DGNGSITAEELHQVLRSLGDDCT 149 (195)
Q Consensus 127 ~~~g~i~~~e~~~~l~~~~~~~~ 149 (195)
+|-.+++.+|++..|+.+|.++.
T Consensus 66 ~gfly~~~eEL~e~Lk~~g~Rf~ 88 (210)
T COG1059 66 DGFLYLSEEELREKLKEVGYRFY 88 (210)
T ss_pred cccccCCHHHHHHHHHHhcchhc
Confidence 44556788899999988875543
No 258
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=23.46 E-value=2.3e+02 Score=22.41 Aligned_cols=68 Identities=19% Similarity=0.264 Sum_probs=43.8
Q ss_pred HHHHHHHHH--HcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcCCcHHHHHHHHHHHHhhcCCCCCcccHHHHH
Q 029304 61 ASELGSILT--SLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGVDSAEVMENLKDAFSVYDIDGNGSITAEELH 138 (195)
Q Consensus 61 ~~e~~~~l~--~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~ 138 (195)
...|..++. ++|+.....++-..++ .|.|+.+|=+..+.. .......+.+..+++.++ ||.+||.
T Consensus 273 ~~~~~~y~~~~KfG~~~~~~~~s~~IR------~G~itReeal~~v~~-~d~~~~~~~~~~~~~~lg------~t~~ef~ 339 (343)
T TIGR03573 273 FTIFHDYLKYLKFGFGRATDHASIDIR------SGRITREEAIELVKE-YDGEFPKEDLEYFLKYLG------ISEEEFW 339 (343)
T ss_pred hHHHHHHHHHhhcCCCcCchHHHHHHH------cCCCCHHHHHHHHHH-hcccccHHHHHHHHHHhC------CCHHHHH
Confidence 344555543 4677666666666665 578888888777776 222222457788888887 6777777
Q ss_pred HHH
Q 029304 139 QVL 141 (195)
Q Consensus 139 ~~l 141 (195)
.++
T Consensus 340 ~~~ 342 (343)
T TIGR03573 340 KTV 342 (343)
T ss_pred HHh
Confidence 664
No 259
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=23.06 E-value=1.2e+02 Score=15.19 Aligned_cols=30 Identities=3% Similarity=0.031 Sum_probs=14.1
Q ss_pred CHHHHHHHHHhhcCCCCcce-eHHHHHHHHH
Q 029304 149 TLAECRRMIRGVDCDGDGTI-DFEEFKVMMT 178 (195)
Q Consensus 149 ~~~~~~~~~~~~d~~~~g~i-~~~eF~~~l~ 178 (195)
+++++...+........... +.++.+..+.
T Consensus 5 s~~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k 35 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPKSAKTRDELLKLAK 35 (38)
T ss_pred CHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence 34444444444444433333 5555555543
No 260
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=22.75 E-value=50 Score=26.97 Aligned_cols=54 Identities=33% Similarity=0.454 Sum_probs=36.7
Q ss_pred CCCCceeHHHHHHHHhhcCCcHH---HHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 029304 90 DGDGFVDFDEFVELNTKGVDSAE---VMENLKDAFSVYDIDGNGSITAEELHQVLRS 143 (195)
Q Consensus 90 ~~~~~i~~~eF~~~~~~~~~~~~---~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 143 (195)
.++...+-.+|+........... --+.++.+-+.+|.|.+|.|+.+|=-.+++.
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 44556666777654433222211 1247888899999999999999998888865
No 261
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=22.45 E-value=2.6e+02 Score=19.26 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=19.7
Q ss_pred CCCCCChHhHHHHHHHhhhhcCCC
Q 029304 32 NNNNVIIPDVHELRQVFNKFDANG 55 (195)
Q Consensus 32 ~~~~l~~~~~~~~~~~F~~~d~~~ 55 (195)
....|++++++++......+|+++
T Consensus 20 lL~~LS~EEL~~L~~el~e~DPd~ 43 (147)
T PF03250_consen 20 LLAKLSPEELEELENELEEMDPDN 43 (147)
T ss_pred HHHhCCHHHHHHHHHHHHhhCCCc
Confidence 456889999999998888888765
No 262
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=22.44 E-value=2.2e+02 Score=21.65 Aligned_cols=10 Identities=20% Similarity=0.162 Sum_probs=4.8
Q ss_pred CCceeHHHHH
Q 029304 92 DGFVDFDEFV 101 (195)
Q Consensus 92 ~~~i~~~eF~ 101 (195)
||.|+-.|.-
T Consensus 69 DG~Vse~Ei~ 78 (267)
T PRK09430 69 KGRVTEADIR 78 (267)
T ss_pred CCCcCHHHHH
Confidence 4455555443
No 263
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=22.33 E-value=3e+02 Score=19.62 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=20.8
Q ss_pred cCCCCCcccHHHHHHHHHHh--CCCCCHHHHHHHHHhhc
Q 029304 125 DIDGNGSITAEELHQVLRSL--GDDCTLAECRRMIRGVD 161 (195)
Q Consensus 125 D~~~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d 161 (195)
..+-...++.++|...++.. +..++++.+..+++.+.
T Consensus 148 n~~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~ 186 (190)
T PF01369_consen 148 NPNIKKKMTKEDFIKNTRGIDDGKDIPEEFLESIYDSIK 186 (190)
T ss_dssp -TTSSSS--HHHHHHHTTTTBTTBS--HHHHHHHHHHHH
T ss_pred hhccccCCcHHHHHHHhhcccCCCCCCHHHHHHHHHHHH
Confidence 33444568888888877754 45567777777776653
No 264
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=22.04 E-value=2e+02 Score=17.64 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=16.9
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 029304 132 ITAEELHQVLRSLGDDCTLAECRRMIRGV 160 (195)
Q Consensus 132 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 160 (195)
|+.+++..+..-....++++++..+...+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 34556666666556667776655544443
No 265
>PRK04387 hypothetical protein; Provisional
Probab=21.94 E-value=2.1e+02 Score=17.84 Aligned_cols=54 Identities=15% Similarity=0.219 Sum_probs=33.8
Q ss_pred CCChHhHHHHHHHhhhhcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHHc
Q 029304 35 NVIIPDVHELRQVFNKFDANGDGKISASELGSILTSL-GHAATEEELQKMVREID 88 (195)
Q Consensus 35 ~l~~~~~~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d 88 (195)
.-|.+++-.+...|.....--...|..++|....+.+ .+..+..+=.+|++.|.
T Consensus 10 dWsteEii~Vi~F~~~VE~aYE~gv~re~ll~~Y~~FK~VVpsK~EEKql~reFe 64 (90)
T PRK04387 10 DWSTEEMISVLHFFNAVEKAYEKGVDAEELLDAYRRFKEIVPSKAEEKQIDREFE 64 (90)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 4456677777777766655555667777777766665 34455556566666664
No 266
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=21.92 E-value=1.4e+02 Score=15.73 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHH
Q 029304 135 EELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVM 176 (195)
Q Consensus 135 ~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 176 (195)
+|....|..+| ++..++..++..+.. ...++.++.+..
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~ 41 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence 56677777777 567788888887764 334556665543
No 267
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=21.62 E-value=2.3e+02 Score=18.16 Aligned_cols=43 Identities=9% Similarity=0.261 Sum_probs=35.6
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCcceeHHHHHHHHHc
Q 029304 132 ITAEELHQVLRSLGDDCTLAECRRMIRGVDCDGDGTIDFEEFKVMMTA 179 (195)
Q Consensus 132 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 179 (195)
+|.+++..+|...|..+++..+..+++.+. ..+.++.+.-...
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa-----Gk~V~eli~~g~~ 59 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN-----GKNIDEVISKGKE 59 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc-----CCCHHHHHHHHHh
Confidence 999999999999999999999999998874 3566777765543
No 268
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=21.62 E-value=1.5e+02 Score=15.80 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=20.7
Q ss_pred CCccc-HHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 029304 129 NGSIT-AEELHQVLRSLGDDCTLAECRRMIRGV 160 (195)
Q Consensus 129 ~g~i~-~~e~~~~l~~~~~~~~~~~~~~~~~~~ 160 (195)
.|.|+ ..++.+-|...|..+++..++.+++..
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 46665 444555556667888888877777653
No 269
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.46 E-value=4.6e+02 Score=21.54 Aligned_cols=82 Identities=16% Similarity=0.181 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhcC---CcHHHHHHHHHHHHhhcCCCCCcccHHHHH
Q 029304 62 SELGSILTSLGHAATEEELQKMVREIDADGDGFVDFDEFVELNTKGV---DSAEVMENLKDAFSVYDIDGNGSITAEELH 138 (195)
Q Consensus 62 ~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~~---~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~ 138 (195)
++..++|+-+. -++.+++.++++..-++...++-......-+.... ......+...++...-...+++.++..|+.
T Consensus 304 d~v~k~LklfT-fl~l~eI~~I~~~H~k~P~~r~aQ~~LA~eVTr~VHG~egL~~A~r~T~al~g~~~~~~~~ls~~ei~ 382 (467)
T KOG2623|consen 304 DDVEKFLKLFT-FLPLEEIKQILEEHRKEPSQRIAQKLLAAEVTRMVHGKEGLEVAERCTKALFGAKKAGLSGLSLSEIL 382 (467)
T ss_pred hHHHHHHHHHh-cCCHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHcccchHHHHHHHHHHhhcccccccccCCHHHHH
Confidence 33444444333 35777888888887766655554444433333222 222222334444433345678889999999
Q ss_pred HHHHHh
Q 029304 139 QVLRSL 144 (195)
Q Consensus 139 ~~l~~~ 144 (195)
+.++..
T Consensus 383 ~lfk~a 388 (467)
T KOG2623|consen 383 QLFKDA 388 (467)
T ss_pred HHHhcC
Confidence 998854
No 270
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=20.92 E-value=1.6e+02 Score=15.98 Aligned_cols=30 Identities=17% Similarity=0.407 Sum_probs=17.8
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Q 029304 56 DGKISASELGSILTSLGHAATEEELQKMVREIDAD 90 (195)
Q Consensus 56 ~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 90 (195)
+|.++..+|+..+ ..+...+..+++.+|..
T Consensus 8 ~~~itv~~~rd~l-----g~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 8 NGEITVAEFRDLL-----GLSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TSSBEHHHHHHHH-----TS-HHHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHH-----CccHHHHHHHHHHHhcc
Confidence 5666677776666 34566666666666543
No 271
>PF12825 DUF3818: Domain of unknown function in PX-proteins (DUF3818); InterPro: IPR024554 The function of this domain is not known, but it is almost always found C-terminal to a PX-domain (IPR001683 from INTERPRO).
Probab=20.85 E-value=4.4e+02 Score=21.03 Aligned_cols=23 Identities=0% Similarity=0.161 Sum_probs=18.0
Q ss_pred CCCCCCChHhHHHHHHHhhhhcC
Q 029304 31 NNNNNVIIPDVHELRQVFNKFDA 53 (195)
Q Consensus 31 ~~~~~l~~~~~~~~~~~F~~~d~ 53 (195)
...+.++++++.++.+.+..+..
T Consensus 167 ~~~p~L~~~~~~~v~~sy~~~~~ 189 (341)
T PF12825_consen 167 DIEPKLSPEQLQRVLESYKAWKN 189 (341)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Confidence 34678899999999888877754
No 272
>COG5562 Phage envelope protein [General function prediction only]
Probab=20.81 E-value=76 Score=21.42 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=11.6
Q ss_pred cCCCCcceeHHHHHHHHHcCCC
Q 029304 161 DCDGDGTIDFEEFKVMMTAGSR 182 (195)
Q Consensus 161 d~~~~g~i~~~eF~~~l~~~~~ 182 (195)
..+..|+.+|++|+.-+...--
T Consensus 82 ~~~qsGqttF~ef~~~la~AGV 103 (137)
T COG5562 82 RRHQSGQTTFEEFCSALAEAGV 103 (137)
T ss_pred HHHhcCCccHHHHHHHHHhCCe
Confidence 3345556666666655554433
No 273
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=20.42 E-value=1.3e+02 Score=14.74 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=11.0
Q ss_pred cccHHHHHHHHHHhCCCC
Q 029304 131 SITAEELHQVLRSLGDDC 148 (195)
Q Consensus 131 ~i~~~e~~~~l~~~~~~~ 148 (195)
.++..|++..++..|.+.
T Consensus 3 ~l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 3 KLTVAELKEELKERGLST 20 (35)
T ss_dssp TSHHHHHHHHHHHTTS-S
T ss_pred cCcHHHHHHHHHHCCCCC
Confidence 356667777777766443
No 274
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=20.31 E-value=3.6e+02 Score=19.78 Aligned_cols=29 Identities=3% Similarity=0.112 Sum_probs=12.8
Q ss_pred HHHHHHHhhcCCCCCcc-cHHHHHHHHHHh
Q 029304 116 NLKDAFSVYDIDGNGSI-TAEELHQVLRSL 144 (195)
Q Consensus 116 ~~~~~f~~~D~~~~g~i-~~~e~~~~l~~~ 144 (195)
.+.+-|+.+=-+.+..| +.+-+..++..+
T Consensus 85 ~~~~YyKkhIy~~d~~v~d~~~lv~~ck~F 114 (205)
T PF12238_consen 85 KMTKYYKKHIYKEDSEVKDYNGLVKFCKDF 114 (205)
T ss_pred HHHHHHHHhccCcccccccHHHHHHHHHHH
Confidence 44444444433344444 444444444443
No 275
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=20.26 E-value=2.5e+02 Score=20.89 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=33.9
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 029304 121 FSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGVD 161 (195)
Q Consensus 121 f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 161 (195)
+...--+++|.+.+..+..-+..+...++..|+..+-+.+.
T Consensus 157 ~~i~vG~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL~ 197 (224)
T PF13829_consen 157 HDIIVGNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRLR 197 (224)
T ss_pred EEEEecCCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHHH
Confidence 33444678999999999999999999999999988866653
No 276
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=20.25 E-value=1.8e+02 Score=16.38 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=27.2
Q ss_pred CCCCChHhHHHHHHHhhhhcCCCCCc----ccHHHHHHHHHHcCCC
Q 029304 33 NNNVIIPDVHELRQVFNKFDANGDGK----ISASELGSILTSLGHA 74 (195)
Q Consensus 33 ~~~l~~~~~~~~~~~F~~~d~~~~g~----l~~~e~~~~l~~~~~~ 74 (195)
-..+|.++...+...|... |+ .+..+...+...+|+.
T Consensus 5 RT~Ft~~Q~~~Le~~fe~~-----~y~~~~~~~~~r~~la~~lgl~ 45 (58)
T TIGR01565 5 RTKFTAEQKEKMRDFAEKL-----GWKLKDKRREEVREFCEEIGVT 45 (58)
T ss_pred CCCCCHHHHHHHHHHHHHc-----CCCCCCCCHHHHHHHHHHhCCC
Confidence 3578999999999998865 34 6667777777766553
No 277
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=20.25 E-value=3.6e+02 Score=19.77 Aligned_cols=113 Identities=15% Similarity=0.209 Sum_probs=62.6
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHHHccCCCCceeHHHHHHHHhhc-CCc-HHHHHH
Q 029304 42 HELRQVFNKFDANGDGKISASELGSILTSLG---HAATEEELQKMVREIDADGDGFVDFDEFVELNTKG-VDS-AEVMEN 116 (195)
Q Consensus 42 ~~~~~~F~~~d~~~~g~l~~~e~~~~l~~~~---~~~~~~~~~~l~~~~d~~~~~~i~~~eF~~~~~~~-~~~-~~~~~~ 116 (195)
.++.++....-..+.|.|+..|+...+.+.. -.++++++.+..+.+..-+.| +....|-.-.... ... ......
T Consensus 97 ~qi~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g-~~l~~~~sg~~vv~s~~~~e~~~~ 175 (223)
T PF04157_consen 97 VQIAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLG-FRLRKFGSGVKVVQSVPYSELSKD 175 (223)
T ss_dssp HHHHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSS-EEEEEETTTEEEEECST-CHH-HH
T ss_pred HHHHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCC-eEEEEeCCCcEEEEeCCchhhhHH
Confidence 3666666666566778899999988887642 246777887777777665554 3222222111111 111 111234
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 029304 117 LKDAFSVYDIDGNGSITAEELHQVLRSLGDDCTLAECRRMIRGV 160 (195)
Q Consensus 117 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 160 (195)
...+.........|.+|..++..-+. ++...+.+.+...
T Consensus 176 ~~~il~~~~~~~~g~vt~~~l~~~~~-----ws~~~a~~~L~~~ 214 (223)
T PF04157_consen 176 QSRILELAEEENGGGVTASELAEKLG-----WSVERAKEALEEL 214 (223)
T ss_dssp HHHHHHHH--TTTSEEEHHHHHHHHT-----B-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHhC-----CCHHHHHHHHHHH
Confidence 45555555245678999998887663 5555555555443
No 278
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=20.05 E-value=1.3e+02 Score=14.61 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=12.0
Q ss_pred cccHHHHHHHHHHhCCCC
Q 029304 131 SITAEELHQVLRSLGDDC 148 (195)
Q Consensus 131 ~i~~~e~~~~l~~~~~~~ 148 (195)
.++..+++..++..|.+.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 456777777777776543
Done!