BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029305
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZW5|A Chain A, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
pdb|3ZW5|B Chain B, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
Length = 147
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 26/139 (18%)
Query: 9 LCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEE 68
+ ++ L+HI + +S++ + FY +LG + +F D F ++
Sbjct: 23 MLIRRLDHIVMTVKSIKDTTMFYSKILGMEVM----TFKEDRKALCFG----------DQ 68
Query: 69 PDNLPKAGKNINPKDNH-ISFQCENMAIVERRLKEMKIDYVKS---RVEEGGI------- 117
NL + GK PK H + + I E L+EM I ++K+ +EEG +
Sbjct: 69 KFNLHEVGKEFEPKAAHPVPGSLDICLITEVPLEEM-IQHLKACDVPIEEGPVPRTGAKG 127
Query: 118 NVDQLFFHDPDGSMIEICN 136
+ ++F DPD ++IE+ N
Sbjct: 128 PIMSIYFRDPDRNLIEVSN 146
>pdb|3L7T|A Chain A, Crystal Structure Of Smu.1112c
pdb|3L7T|B Chain B, Crystal Structure Of Smu.1112c
pdb|3L7T|C Chain C, Crystal Structure Of Smu.1112c
pdb|3L7T|D Chain D, Crystal Structure Of Smu.1112c
Length = 134
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 8/131 (6%)
Query: 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIR---RPGSFDFDGACRLFNYGMGIHLLKSE 67
LK+++H++L+ + S +FY N LGF IR RP D+ + + + I K
Sbjct: 3 LKAVHHVALIVSDYDKSYEFYVNQLGFEVIRENHRPKRHDYKLDLKCGDIELEIFGNKLT 62
Query: 68 EPDNLPKAGKNINPKD----NHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLF 123
+ + + P++ H++F E++ + L + I + R ++ F
Sbjct: 63 DSNYCAPPERISWPREACGLRHLAFYVEDVEASRQELIALGIRVEEVRYDD-YTGKKMAF 121
Query: 124 FHDPDGSMIEI 134
F DPDG +E+
Sbjct: 122 FFDPDGLPLEL 132
>pdb|3HNQ|A Chain A, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|B Chain B, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|C Chain C, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|D Chain D, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
Length = 144
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 10/130 (7%)
Query: 10 CLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEP 69
+ ++H+ L + ++ FY+ VLGF + F + +G L +E
Sbjct: 20 IIDRIDHLVLTVSDISTTIRFYEEVLGF------SAVTFKQNRKALIFGAQKINLHQQEX 73
Query: 70 DNLPKAGKNINPKDNHISFQCEN-MAIVERRLKEMKIDYVKSRVEEGGIN--VDQLFFHD 126
+ PKA + P + F + V + + I V+ VE G + ++ D
Sbjct: 74 EFEPKASRP-TPGSADLCFITSTPINDVVSEILQAGISIVEGPVERTGATGEIXSIYIRD 132
Query: 127 PDGSMIEICN 136
PDG++IEI
Sbjct: 133 PDGNLIEISQ 142
>pdb|3GHJ|A Chain A, Crystal Structure From The Mobile Metagenome Of Halifax
Harbour Sewage Outfall: Integron Cassette Protein
Hfx_cass4
Length = 141
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 8 PLCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNY----GMGIHL 63
P +K L +++ +++E S FY +LGF G D + R +N+ G +
Sbjct: 23 PXNIKGLFEVAVKVKNLEKSSQFYTEILGF----EAGLLD---SARRWNFLWVSGRAGXV 75
Query: 64 LKSEEPDNLPKAGKNINPKDNHISFQCENMAIVE-RRLKEMKIDYVKSRVEEGGINVDQL 122
+ EE +N + H SF+ E I ++ E K V V + L
Sbjct: 76 VLQEEKENW---------QQQHFSFRVEKSEIEPLKKALESKGVSVHGPVNQEWXQAVSL 126
Query: 123 FFHDPDGSMIEIC 135
+F DP+G +E
Sbjct: 127 YFADPNGHALEFT 139
>pdb|3HUH|A Chain A, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|B Chain B, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|C Chain C, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|D Chain D, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
Length = 152
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 12/137 (8%)
Query: 3 ESVENPLCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIH 62
ES++ + + ++H+ L + ++ FY+ VLGF + F + +G
Sbjct: 15 ESIQ--MIIDRIDHLVLTVSDISTTIRFYEEVLGF------SAVTFKQNRKALIFGAQKI 66
Query: 63 LLKSEEPDNLPKAGKNINPKDNHISFQCEN-MAIVERRLKEMKIDYVKSRVEEGGIN--V 119
L +E + PKA + P + F + V + + I V+ VE G +
Sbjct: 67 NLHQQEMEFEPKASRP-TPGSADLCFITSTPINDVVSEILQAGISIVEGPVERTGATGEI 125
Query: 120 DQLFFHDPDGSMIEICN 136
++ DPDG++IEI
Sbjct: 126 MSIYIRDPDGNLIEISQ 142
>pdb|1NPB|A Chain A, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|B Chain B, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|C Chain C, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|D Chain D, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|E Chain E, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
pdb|1NPB|F Chain F, Crystal Structure Of The Fosfomycin Resistance Protein
From Transposon Tn2921
Length = 141
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 15/126 (11%)
Query: 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPD 70
L+SLNH++L ++ S+ F+ +LG R ++ L + + L E
Sbjct: 2 LQSLNHLTLAVSDLQKSVTFWHELLGLTLHAR-----WNTGAYLTCGDLWVCLSYDEARQ 56
Query: 71 NLPKAGKNINPKDNHISFQC--ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPD 128
+P + H +F E+ + +RL++ + K EG +F DPD
Sbjct: 57 YVPPQESDY----THYAFTVAEEDFEPLSQRLEQAGVTIWKQNKSEGA----SFYFLDPD 108
Query: 129 GSMIEI 134
G +E+
Sbjct: 109 GHKLEL 114
>pdb|3EY7|A Chain A, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass1
pdb|3EY7|B Chain B, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass1
Length = 133
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/137 (18%), Positives = 55/137 (40%), Gaps = 26/137 (18%)
Query: 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMG-IHLLKSEEP 69
+ L+H+ L + + +FY+ VLG + ++G G I L +
Sbjct: 8 ISHLDHLVLTVADIPTTTNFYEKVLG---------------XKAVSFGAGRIALEFGHQK 52
Query: 70 DNLPKAGKNINPKDNHISFQCENMAIVE--------RRLKEMKIDYVKSRVEEGGIN--V 119
NL + G PK ++ ++ + + +++ + + V+ G +
Sbjct: 53 INLHQLGNEFEPKAQNVRVGSADLCFITDTVLSDAXKHVEDQGVTIXEGPVKRTGAQGAI 112
Query: 120 DQLFFHDPDGSMIEICN 136
+F DPDG++IE+
Sbjct: 113 TSFYFRDPDGNLIEVST 129
>pdb|4IR0|A Chain A, Crystal Structure Of Metallothiol Transferase Fosb 2 From
Bacillus Anthracis Str. Ames
pdb|4IR0|B Chain B, Crystal Structure Of Metallothiol Transferase Fosb 2 From
Bacillus Anthracis Str. Ames
Length = 148
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 37/137 (27%)
Query: 11 LKSLNHISLVCRSVEASLDFYQNVLG---FFPIRRPGSFDFDGACRLFNYGMGIHLLKSE 67
L+ +NHI ++E S++FYQ +L R+ FD +G N
Sbjct: 3 LQGINHICFSVSNLEKSIEFYQKILQAKLLVKGRKLAYFDLNGLWIALNV---------- 52
Query: 68 EPDNLPKAGKNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINV-------- 119
+++P+ I H +F N A +D++K + + +N+
Sbjct: 53 -EEDIPR--NEIKQSYTHXAFTVTNEA----------LDHLKEVLIQNDVNILPGRERDE 99
Query: 120 -DQ--LFFHDPDGSMIE 133
DQ L+F DPDG E
Sbjct: 100 RDQRSLYFTDPDGHKFE 116
>pdb|1LQK|A Chain A, High Resolution Structure Of Fosfomycin Resistance Protein
A (Fosa)
pdb|1LQK|B Chain B, High Resolution Structure Of Fosfomycin Resistance Protein
A (Fosa)
pdb|1LQO|A Chain A, Crystal Strutcure Of The Fosfomycin Resistance Protein A
(Fosa) Containing Bound Thallium Cations
pdb|1LQO|B Chain B, Crystal Strutcure Of The Fosfomycin Resistance Protein A
(Fosa) Containing Bound Thallium Cations
pdb|1LQP|A Chain A, Crystal Structure Of The Fosfomycin Resistance Protein
(Fosa) Containing Bound Substrate
pdb|1LQP|B Chain B, Crystal Structure Of The Fosfomycin Resistance Protein
(Fosa) Containing Bound Substrate
pdb|1NKI|A Chain A, Crystal Strucure Of The Fosfomycin Resistance Protein A
(Fosa) Containing Bound Phosphonoformate
pdb|1NKI|B Chain B, Crystal Strucure Of The Fosfomycin Resistance Protein A
(Fosa) Containing Bound Phosphonoformate
pdb|1NNR|A Chain A, Crystal Structure Of A Probable Fosfomycin Resistance
Protein (Pa1129) From Pseudomonas Aeruginosa With
Sulfate Present In The Active Site
pdb|1NNR|B Chain B, Crystal Structure Of A Probable Fosfomycin Resistance
Protein (Pa1129) From Pseudomonas Aeruginosa With
Sulfate Present In The Active Site
Length = 135
Score = 33.9 bits (76), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 14/129 (10%)
Query: 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPD 70
L LNH++L + AS+ FY+++LGF R +D L + + L S EP
Sbjct: 2 LTGLNHLTLAVADLPASIAFYRDLLGF---RLEARWDQGAYLELGS----LWLCLSREPQ 54
Query: 71 NLPKAGKNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGS 130
G + + A +L+ + K EG D +F DPDG
Sbjct: 55 ---YGGPAADYTHYAFGIAAADFARFAAQLRAHGVREWKQNRSEG----DSFYFLDPDGH 107
Query: 131 MIEICNCDV 139
+E D+
Sbjct: 108 RLEAHVGDL 116
>pdb|3EY8|A Chain A, Structure From The Mobile Metagenome Of V. Pseudocholerae.
Vpc_cass1
pdb|3EY8|B Chain B, Structure From The Mobile Metagenome Of V. Pseudocholerae.
Vpc_cass1
Length = 133
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 26/137 (18%)
Query: 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMG-IHLLKSEEP 69
+ L+H+ L + + FY+ VLG + ++G G I L +
Sbjct: 8 ISHLDHLVLTVADIPTTTKFYEKVLG---------------XKAVSFGSGRIALEFGHQK 52
Query: 70 DNLPKAGKNINPKDNHISFQCENMAIVERRLKEMKIDYVKSR---VEEGGIN-------V 119
NL + G PK ++ ++ + +YV+++ + EG + +
Sbjct: 53 INLHQLGHEFEPKAQNVRTGSADLCFITDIDLSDAXEYVENQGVVIXEGPVKRTGAQGAI 112
Query: 120 DQLFFHDPDGSMIEICN 136
+F DPDG++IE+
Sbjct: 113 TSFYFRDPDGNLIEVST 129
>pdb|3RMU|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|C Chain C, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|D Chain D, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
Length = 134
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLF-NYG-MGIHLLKSEE 68
L LNH+++ +E + FY+N+LG + G +F N G + LL
Sbjct: 3 LGRLNHVAIAVPDLEKAAAFYKNILG-AQVSEAVPLPEHGVSVVFVNLGNTKMELLHPLG 61
Query: 69 PDNLPKAG---KNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFH 125
D+ P AG KN +HI + +N+ LK+ KI + V+ G +F H
Sbjct: 62 LDS-PIAGFLQKNKAGGMHHICIEVDNINAAVMDLKKKKIRSLSEEVKIGAHGKPVIFLH 120
Query: 126 DPD--GSMIEI 134
D G ++E+
Sbjct: 121 PKDCGGVLVEL 131
>pdb|2P25|A Chain A, The Crystal Structure Of The Glyoxalase Family Protein
From Enterococcus Faecalis
Length = 126
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIR---RPGSFDFDGACRLFNYGMGIHLLKSE 67
K ++H+++ + +A+ +FY LGF +R RP D +L + + I + S+
Sbjct: 3 FKEIHHVAINASNYQATKNFYVEKLGFEVLRENHRPEKNDIKLDLKLGSQELEIFI--SD 60
Query: 68 EPDNLPKAGKNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDP 127
+ P + + + H++F+ E++ V L E I+ RV++ FF DP
Sbjct: 61 QFPARPSYPEALGLR--HLAFKVEHIEEVIAFLNEQGIETEPLRVDD-FTGKKXTFFFDP 117
Query: 128 DGSMIEI 134
DG +E+
Sbjct: 118 DGLPLEL 124
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 56/147 (38%), Gaps = 26/147 (17%)
Query: 14 LNHISLVCRSVEASLDFYQNVLGF-------FPIRR--------------PGSFDFDGAC 52
L L + + SLDFY VLG FPI + P D A
Sbjct: 35 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 94
Query: 53 RLFNYGMG--IHLLKSEEPDNLPKAGKNINPKD-NHISFQCENMAIVERRLKEMKIDYVK 109
L H +E+ + N +P+ HI ++ +R +E+ + +VK
Sbjct: 95 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 154
Query: 110 SRVEEGGINVDQLFFHDPDGSMIEICN 136
+ ++G + F DPDG IEI N
Sbjct: 155 -KPDDGKMK-GLAFIQDPDGYWIEILN 179
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 56/147 (38%), Gaps = 26/147 (17%)
Query: 14 LNHISLVCRSVEASLDFYQNVLGF-------FPIRR--------------PGSFDFDGAC 52
L L + + SLDFY VLG FPI + P D A
Sbjct: 31 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAW 90
Query: 53 RLFNYGMG--IHLLKSEEPDNLPKAGKNINPKD-NHISFQCENMAIVERRLKEMKIDYVK 109
L H +E+ + N +P+ HI ++ +R +E+ + +VK
Sbjct: 91 ALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 150
Query: 110 SRVEEGGINVDQLFFHDPDGSMIEICN 136
+ ++G + F DPDG IEI N
Sbjct: 151 -KPDDGKMK-GLAFIQDPDGYWIEILN 175
>pdb|3OAJ|A Chain A, Crystal Structure Of Putative Dioxygenase From Bacillus
Subtilis Subsp. Subtilis Str. 168
pdb|3OAJ|B Chain B, Crystal Structure Of Putative Dioxygenase From Bacillus
Subtilis Subsp. Subtilis Str. 168
Length = 335
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Query: 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLF--NYGMGIHLLKSEEPD 70
++HI+ + + + DFY VLG +++ +FD G L+ N G + + P
Sbjct: 8 GIHHITAIVGHPQENTDFYAGVLGLRLVKQTVNFDDPGTYHLYFGNEGGKPGTIITFFPW 67
Query: 71 NLPKAGKNINPKDNHISFQCEN--MAIVERRLKEMKIDYVK-SRVEEGGINVDQLFFHDP 127
+ G + + S+ MA E+RL++ + Y K R E + D DP
Sbjct: 68 AGARQGVIGDGQVGVTSYVVPKGAMAFWEKRLEKFNVPYTKIERFGEQYVEFD-----DP 122
Query: 128 DGSMIEIC 135
G +EI
Sbjct: 123 HGLHLEIV 130
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 45/122 (36%)
Query: 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLP 73
L H L ++ S+DFY VLG +R + ++ + YG E N
Sbjct: 3 LLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWG 62
Query: 74 KAGKNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIE 133
+ HI+ +N A ++++ + + G F DPDG IE
Sbjct: 63 VDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIE 122
Query: 134 IC 135
+
Sbjct: 123 LI 124
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 44/163 (26%)
Query: 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLP 73
L L + + SLDFY VLG +++ DF ++ L E+ +++P
Sbjct: 32 LQQTMLRIKDPKKSLDFYTRVLGLTLLQK---LDFPAM------KFSLYFLAYEDKNDIP 82
Query: 74 KAGK--------------------------------NINPKD-NHISFQCENMAIVERRL 100
K N +P+ HI ++ +R
Sbjct: 83 KDKSEKTAWTFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF 142
Query: 101 KEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVV 143
+E+ + +VK + ++G + F DPDG IEI N + + +
Sbjct: 143 EELGVKFVK-KPDDGKMK-GLAFIQDPDGYWIEILNPNKIATI 183
>pdb|2P7K|A Chain A, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
(Hexagonal Form)
pdb|2P7K|B Chain B, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
(Hexagonal Form)
pdb|2P7L|A Chain A, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 5.75
pdb|2P7L|B Chain B, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 5.75
pdb|2P7L|C Chain C, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 5.75
pdb|2P7L|D Chain D, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 5.75
pdb|2P7L|E Chain E, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 5.75
pdb|2P7L|F Chain F, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 5.75
pdb|2P7M|A Chain A, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 6.5
pdb|2P7M|B Chain B, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 6.5
pdb|2P7M|C Chain C, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 6.5
pdb|2P7M|D Chain D, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 6.5
pdb|2P7M|E Chain E, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 6.5
pdb|2P7M|F Chain F, Crystal Structure Of Monoclinic Form Of Genomically
Encoded Fosfomycin Resistance Protein, Fosx, From
Listeria Monocytogenes At Ph 6.5
pdb|2P7O|A Chain A, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
(Tetragonal Form)
pdb|2P7O|B Chain B, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
(Tetragonal Form)
pdb|2P7P|A Chain A, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
Complexed With Mn(Ii) And Sulfate Ion
pdb|2P7P|B Chain B, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
Complexed With Mn(Ii) And Sulfate Ion
pdb|2P7P|C Chain C, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
Complexed With Mn(Ii) And Sulfate Ion
pdb|2P7P|D Chain D, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
Complexed With Mn(Ii) And Sulfate Ion
pdb|2P7P|E Chain E, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
Complexed With Mn(Ii) And Sulfate Ion
pdb|2P7P|F Chain F, Crystal Structure Of Genomically Encoded Fosfomycin
Resistance Protein, Fosx, From Listeria Monocytogenes
Complexed With Mn(Ii) And Sulfate Ion
Length = 133
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 16/130 (12%)
Query: 10 CLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEP 69
+ L+HI+L+ + + + F QN+ I G F + F G+ + E
Sbjct: 1 MISGLSHITLIVKDLNKTTAFLQNIFNAEEIYSSGDKTFSLSKEKFFLIAGLWICIME-- 58
Query: 70 DNLPKAGKNINPKD-NHISFQCENMAIVE--RRLKEMKIDYV--KSRVEEGGINVDQLFF 124
G ++ + NHI+FQ ++ + E R+K + ++ + RV+ G ++ +F
Sbjct: 59 ------GDSLQERTYNHIAFQIQSEEVDEYTERIKALGVEMKPERPRVQGEGRSI---YF 109
Query: 125 HDPDGSMIEI 134
+D D + E+
Sbjct: 110 YDFDNHLFEL 119
>pdb|2P7Q|A Chain A, Crystal Structure Of E126q Mutant Of Genomically Encoded
Fosfomycin Resistance Protein, Fosx, From Listeria
Monocytogenes Complexed With Mn(Ii) And
1s,2s-Dihydroxypropylphosphonic Acid
pdb|2P7Q|B Chain B, Crystal Structure Of E126q Mutant Of Genomically Encoded
Fosfomycin Resistance Protein, Fosx, From Listeria
Monocytogenes Complexed With Mn(Ii) And
1s,2s-Dihydroxypropylphosphonic Acid
pdb|2P7Q|C Chain C, Crystal Structure Of E126q Mutant Of Genomically Encoded
Fosfomycin Resistance Protein, Fosx, From Listeria
Monocytogenes Complexed With Mn(Ii) And
1s,2s-Dihydroxypropylphosphonic Acid
pdb|2P7Q|D Chain D, Crystal Structure Of E126q Mutant Of Genomically Encoded
Fosfomycin Resistance Protein, Fosx, From Listeria
Monocytogenes Complexed With Mn(Ii) And
1s,2s-Dihydroxypropylphosphonic Acid
pdb|2P7Q|E Chain E, Crystal Structure Of E126q Mutant Of Genomically Encoded
Fosfomycin Resistance Protein, Fosx, From Listeria
Monocytogenes Complexed With Mn(Ii) And
1s,2s-Dihydroxypropylphosphonic Acid
pdb|2P7Q|F Chain F, Crystal Structure Of E126q Mutant Of Genomically Encoded
Fosfomycin Resistance Protein, Fosx, From Listeria
Monocytogenes Complexed With Mn(Ii) And
1s,2s-Dihydroxypropylphosphonic Acid
Length = 133
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 16/130 (12%)
Query: 10 CLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEP 69
+ L+HI+L+ + + + F QN+ I G F + F G+ + E
Sbjct: 1 MISGLSHITLIVKDLNKTTAFLQNIFNAEEIYSSGDKTFSLSKEKFFLIAGLWICIME-- 58
Query: 70 DNLPKAGKNINPKD-NHISFQCENMAIVE--RRLKEMKIDYV--KSRVEEGGINVDQLFF 124
G ++ + NHI+FQ ++ + E R+K + ++ + RV+ G ++ +F
Sbjct: 59 ------GDSLQERTYNHIAFQIQSEEVDEYTERIKALGVEMKPERPRVQGEGRSI---YF 109
Query: 125 HDPDGSMIEI 134
+D D + E+
Sbjct: 110 YDFDNHLFEL 119
>pdb|2GAN|A Chain A, Crystal Structure Of A Putative Acetyltransferase From
Pyrococcus Horikoshii, Northeast Structural Genomics
Target Jr32.
pdb|2GAN|B Chain B, Crystal Structure Of A Putative Acetyltransferase From
Pyrococcus Horikoshii, Northeast Structural Genomics
Target Jr32
Length = 190
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 15/110 (13%)
Query: 24 VEASLDFYQNVLGFFPI-----RRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKN 78
+E Y++ G +P R+P DF+G ++ + L S+E D L
Sbjct: 18 LELXFRIYRSTNGKYPALEWVKRKPNPNDFNGFREVYEPFLKFRL--SQEFDEL-----Y 70
Query: 79 INPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPD 128
KDN I +A+V +R+KE I +V + + + + F DP+
Sbjct: 71 TYQKDNRI---IGTIALVYKRIKEKGIWWVPEELXNEKVGLIEFFVVDPE 117
>pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex
Length = 525
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 55 FNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCENMAIVERRLKEMK 104
+ YG G++ + + ++PK +N +P+ +++F + + RRL + K
Sbjct: 433 WTYGAGVNDPREDRYFSIPKQAQNYDPEGEYVAFWLQQL----RRLPKEK 478
>pdb|1ZSW|A Chain A, Crystal Structure Of Bacillus Cereus Metallo Protein
From Glyoxalase Family
Length = 338
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIR 41
+K +HIS+V ++ + FY+NVLG ++
Sbjct: 28 IKGHHHISMVTKNANENNHFYKNVLGLRRVK 58
>pdb|1F1R|A Chain A, Crystal Structure Of Homoprotocatechuate 2,3-Dioxygenase
From Arthrobacter Globiformis (Native, Non-Cryo)
pdb|1F1R|B Chain B, Crystal Structure Of Homoprotocatechuate 2,3-Dioxygenase
From Arthrobacter Globiformis (Native, Non-Cryo)
pdb|1F1U|A Chain A, Crystal Structure Of Homoprotocatechuate 2,3-dioxygenase
From Arthrobacter Globiformis (native, Low Temperature)
pdb|1F1U|B Chain B, Crystal Structure Of Homoprotocatechuate 2,3-dioxygenase
From Arthrobacter Globiformis (native, Low Temperature)
pdb|1F1V|A Chain A, Anaerobic Substrate Complex Of Homoprotocatechuate
2,3-Dioxygenase From Arthrobacter Globiformis. (Complex
With 3,4- Dihydroxyphenylacetate)
pdb|1F1V|B Chain B, Anaerobic Substrate Complex Of Homoprotocatechuate
2,3-Dioxygenase From Arthrobacter Globiformis. (Complex
With 3,4- Dihydroxyphenylacetate)
Length = 323
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 80 NPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEG----GI-NVDQLFFHDPDGSMIEI 134
P+ +H++F + + +M + R+E G G+ N L+ DPDG IEI
Sbjct: 209 GPRMHHVAFATHEKHNIIQICDKMGALRISDRIERGPGRHGVSNAFYLYILDPDGHRIEI 268
Query: 135 CNCD 138
D
Sbjct: 269 YTQD 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,699,667
Number of Sequences: 62578
Number of extensions: 230013
Number of successful extensions: 452
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 27
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)