Query 029305
Match_columns 195
No_of_seqs 196 out of 1711
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 10:47:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029305.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029305hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2514 Predicted ring-cleavag 99.9 4.4E-25 9.5E-30 173.4 12.1 168 12-192 9-187 (265)
2 PRK11478 putative lyase; Provi 99.9 1.9E-20 4.2E-25 134.7 15.7 125 8-136 1-128 (129)
3 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 3.6E-19 7.7E-24 130.4 15.9 125 11-137 1-141 (142)
4 cd07243 2_3_CTD_C C-terminal d 99.8 2.5E-19 5.4E-24 132.1 14.6 118 9-137 2-125 (143)
5 PLN02300 lactoylglutathione ly 99.8 1.4E-19 3.1E-24 147.8 13.3 147 9-192 20-173 (286)
6 TIGR03645 glyox_marine lactoyl 99.8 4.7E-19 1E-23 133.3 14.7 127 12-138 3-152 (162)
7 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 6.3E-19 1.4E-23 125.6 13.7 120 13-135 1-125 (125)
8 cd07255 Glo_EDI_BRP_like_12 Th 99.8 2.8E-18 6.1E-23 122.6 15.6 121 12-143 1-125 (125)
9 cd08347 PcpA_C_like C-terminal 99.8 1.9E-18 4.2E-23 129.3 15.2 120 13-143 1-126 (157)
10 cd07253 Glo_EDI_BRP_like_2 Thi 99.8 2.6E-18 5.6E-23 122.1 15.1 121 11-137 1-125 (125)
11 cd08342 HPPD_N_like N-terminal 99.8 1.3E-18 2.8E-23 127.0 13.6 123 14-139 1-125 (136)
12 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 3.5E-18 7.7E-23 121.4 15.5 122 11-136 1-125 (125)
13 TIGR00068 glyox_I lactoylgluta 99.8 2E-18 4.3E-23 128.1 14.6 128 10-139 14-143 (150)
14 cd08364 FosX FosX, a fosfomyci 99.8 2.4E-18 5.1E-23 124.9 14.5 118 10-138 1-123 (131)
15 PLN03042 Lactoylglutathione ly 99.8 3.2E-18 7E-23 131.1 15.9 128 12-141 26-178 (185)
16 TIGR03211 catechol_2_3 catecho 99.8 7.1E-19 1.5E-23 144.5 12.6 157 11-192 2-164 (303)
17 PLN02367 lactoylglutathione ly 99.8 4.2E-18 9E-23 133.6 15.8 127 12-140 74-225 (233)
18 PRK04101 fosfomycin resistance 99.8 3E-18 6.4E-23 125.6 14.1 119 10-139 1-121 (139)
19 cd07245 Glo_EDI_BRP_like_9 Thi 99.8 4.3E-18 9.2E-23 118.6 13.2 114 14-134 1-114 (114)
20 cd07265 2_3_CTD_N N-terminal d 99.8 4.7E-18 1E-22 121.3 13.5 115 11-138 2-120 (122)
21 cd09013 BphC-JF8_N_like N-term 99.8 5.4E-18 1.2E-22 120.9 13.1 114 9-138 2-119 (121)
22 cd08361 PpCmtC_N N-terminal do 99.8 5.8E-18 1.3E-22 121.6 13.1 113 9-137 2-119 (124)
23 TIGR03213 23dbph12diox 2,3-dih 99.8 3.9E-18 8.4E-23 139.2 13.7 154 11-192 1-161 (286)
24 cd07252 BphC1-RGP6_N_like N-te 99.8 9.1E-18 2E-22 119.8 13.8 113 12-138 1-118 (120)
25 cd09011 Glo_EDI_BRP_like_23 Th 99.8 1E-17 2.2E-22 119.3 13.5 117 13-137 2-119 (120)
26 cd07233 Glyoxalase_I Glyoxalas 99.8 1.3E-17 2.8E-22 118.3 13.4 116 14-135 1-121 (121)
27 cd08360 MhqB_like_C C-terminal 99.8 1.6E-17 3.5E-22 120.9 14.1 118 12-139 2-122 (134)
28 cd08351 ChaP_like ChaP, an enz 99.8 1.8E-17 3.9E-22 118.7 14.1 112 11-137 2-121 (123)
29 cd07242 Glo_EDI_BRP_like_6 Thi 99.8 3E-17 6.6E-22 117.8 15.2 119 13-136 1-127 (128)
30 cd07267 THT_Oxygenase_N N-term 99.8 2E-17 4.2E-22 116.8 14.0 110 11-137 1-110 (113)
31 TIGR03081 metmalonyl_epim meth 99.8 6.7E-18 1.5E-22 120.9 11.7 124 13-136 1-128 (128)
32 cd07256 HPCD_C_class_II C-term 99.8 2.4E-17 5.2E-22 123.8 14.4 119 12-140 2-126 (161)
33 cd07247 SgaA_N_like N-terminal 99.8 4.5E-17 9.7E-22 114.6 15.0 112 14-136 1-114 (114)
34 PRK06724 hypothetical protein; 99.8 2.7E-17 5.8E-22 119.1 14.1 112 10-138 4-124 (128)
35 cd08362 BphC5-RrK37_N_like N-t 99.8 2.4E-17 5.2E-22 116.9 13.3 114 11-138 1-118 (120)
36 cd09014 BphC-JF8_C_like C-term 99.8 3.5E-17 7.5E-22 123.6 14.6 124 9-140 2-130 (166)
37 PRK10291 glyoxalase I; Provisi 99.8 2.5E-17 5.4E-22 118.9 13.0 117 18-139 1-122 (129)
38 cd07240 ED_TypeI_classII_N N-t 99.8 4.4E-17 9.5E-22 114.9 13.9 112 12-138 1-115 (117)
39 cd07257 THT_oxygenase_C The C- 99.8 1.5E-17 3.3E-22 123.8 12.2 121 13-139 1-127 (153)
40 cd08363 FosB FosB, a fosfomyci 99.8 3.1E-17 6.7E-22 119.0 13.5 115 14-139 1-117 (131)
41 cd07263 Glo_EDI_BRP_like_16 Th 99.8 4.5E-17 9.7E-22 114.6 13.9 117 16-136 1-119 (119)
42 cd07258 PpCmtC_C C-terminal do 99.8 3E-17 6.4E-22 120.8 13.3 112 15-139 1-116 (141)
43 cd08346 PcpA_N_like N-terminal 99.7 6.6E-17 1.4E-21 115.1 13.7 117 13-135 1-126 (126)
44 cd07266 HPCD_N_class_II N-term 99.7 4.8E-17 1E-21 115.7 12.9 113 10-137 1-118 (121)
45 TIGR02295 HpaD 3,4-dihydroxyph 99.7 1.7E-17 3.7E-22 135.7 11.7 150 10-192 1-155 (294)
46 cd08348 BphC2-C3-RGP6_C_like T 99.7 1.5E-16 3.2E-21 115.3 15.2 121 13-145 1-128 (134)
47 cd07237 BphC1-RGP6_C_like C-te 99.7 5.5E-17 1.2E-21 121.0 13.1 120 11-138 7-132 (154)
48 cd08345 Fosfomycin_RP Fosfomyc 99.7 9.7E-17 2.1E-21 112.6 12.8 109 16-137 1-111 (113)
49 cd07264 Glo_EDI_BRP_like_15 Th 99.7 3E-16 6.5E-21 112.0 15.4 117 14-136 1-124 (125)
50 cd07244 FosA FosA, a Fosfomyci 99.7 1E-16 2.2E-21 114.4 12.7 109 13-138 1-111 (121)
51 cd07239 BphC5-RK37_C_like C-te 99.7 1.6E-16 3.4E-21 117.3 13.5 114 12-139 3-119 (144)
52 cd08357 Glo_EDI_BRP_like_18 Th 99.7 1.7E-16 3.8E-21 113.1 13.2 115 16-136 2-124 (125)
53 cd07249 MMCE Methylmalonyl-CoA 99.7 9.6E-17 2.1E-21 114.7 11.7 122 14-136 1-128 (128)
54 PF00903 Glyoxalase: Glyoxalas 99.7 4.8E-17 1E-21 115.7 9.8 122 13-134 1-128 (128)
55 cd07235 MRD Mitomycin C resist 99.7 2.6E-16 5.7E-21 112.1 13.5 118 14-136 1-122 (122)
56 cd08359 Glo_EDI_BRP_like_22 Th 99.7 3.8E-16 8.2E-21 110.7 14.0 113 16-136 4-119 (119)
57 cd08354 Glo_EDI_BRP_like_13 Th 99.7 6.1E-16 1.3E-20 109.8 14.3 116 14-136 1-121 (122)
58 cd08355 Glo_EDI_BRP_like_14 Th 99.7 1.1E-15 2.3E-20 109.0 15.2 118 17-136 3-121 (122)
59 cd07261 Glo_EDI_BRP_like_11 Th 99.7 9.5E-16 2.1E-20 107.9 13.7 110 17-136 2-114 (114)
60 cd09012 Glo_EDI_BRP_like_24 Th 99.7 6.7E-16 1.4E-20 110.5 13.0 117 15-136 2-123 (124)
61 cd07262 Glo_EDI_BRP_like_19 Th 99.7 1.2E-15 2.5E-20 108.9 14.0 111 14-135 1-122 (123)
62 cd07254 Glo_EDI_BRP_like_20 Th 99.7 1.4E-15 3.1E-20 108.0 14.4 111 15-137 3-117 (120)
63 cd07246 Glo_EDI_BRP_like_8 Thi 99.7 2.1E-15 4.5E-20 106.9 15.2 116 17-136 5-121 (122)
64 PF12681 Glyoxalase_2: Glyoxal 99.7 1E-15 2.2E-20 106.5 13.1 103 19-135 1-108 (108)
65 cd08344 MhqB_like_N N-terminal 99.7 8.9E-16 1.9E-20 108.1 12.8 107 13-138 2-110 (112)
66 cd08343 ED_TypeI_classII_C C-t 99.7 1.5E-15 3.2E-20 110.0 13.9 114 15-139 1-119 (131)
67 cd07238 Glo_EDI_BRP_like_5 Thi 99.7 2.1E-15 4.5E-20 105.9 14.2 106 16-137 3-111 (112)
68 TIGR03211 catechol_2_3 catecho 99.7 7.6E-16 1.6E-20 126.6 13.6 119 9-137 141-265 (303)
69 cd08349 BLMA_like Bleomycin bi 99.7 2.2E-15 4.9E-20 105.2 14.1 108 18-136 3-112 (112)
70 cd08350 BLMT_like BLMT, a bleo 99.7 4.3E-15 9.3E-20 105.8 13.7 106 16-136 5-118 (120)
71 cd06587 Glo_EDI_BRP_like This 99.7 3.4E-15 7.3E-20 102.7 12.2 111 16-134 1-112 (112)
72 cd08358 Glo_EDI_BRP_like_21 Th 99.7 7.4E-15 1.6E-19 106.0 14.1 109 13-136 2-126 (127)
73 TIGR02295 HpaD 3,4-dihydroxyph 99.6 6E-15 1.3E-19 120.6 14.3 120 9-138 132-257 (294)
74 TIGR03213 23dbph12diox 2,3-dih 99.6 1.5E-14 3.3E-19 118.0 14.4 117 11-138 140-264 (286)
75 cd08356 Glo_EDI_BRP_like_17 Th 99.6 1.9E-14 4.2E-19 101.7 12.9 103 17-136 5-113 (113)
76 cd07251 Glo_EDI_BRP_like_10 Th 99.6 2.3E-14 5E-19 101.4 13.1 114 17-136 2-120 (121)
77 KOG2944 Glyoxalase [Carbohydra 99.5 8.9E-13 1.9E-17 96.0 12.5 123 12-137 21-168 (170)
78 PLN02300 lactoylglutathione ly 99.5 1.4E-12 3.1E-17 106.5 14.5 121 11-138 152-279 (286)
79 PF13669 Glyoxalase_4: Glyoxal 99.5 2.4E-13 5.2E-18 95.4 7.9 98 15-115 1-101 (109)
80 COG3607 Predicted lactoylgluta 99.3 9.6E-12 2.1E-16 87.2 9.6 119 16-139 6-129 (133)
81 TIGR01263 4HPPD 4-hydroxypheny 99.2 1.2E-10 2.7E-15 97.9 12.7 173 12-192 1-179 (353)
82 COG3324 Predicted enzyme relat 99.2 5.2E-10 1.1E-14 80.0 13.9 115 12-137 8-125 (127)
83 COG3565 Predicted dioxygenase 99.2 1.6E-10 3.5E-15 79.9 10.3 123 14-140 5-132 (138)
84 cd07250 HPPD_C_like C-terminal 99.2 6E-11 1.3E-15 91.6 8.4 101 11-111 1-112 (191)
85 COG0346 GloA Lactoylglutathion 99.2 1.6E-10 3.5E-15 81.5 7.7 122 12-136 1-138 (138)
86 cd06588 PhnB_like Escherichia 99.0 1.6E-08 3.5E-13 72.8 13.5 111 17-135 3-128 (128)
87 TIGR01263 4HPPD 4-hydroxypheny 99.0 3.6E-09 7.8E-14 89.0 9.2 104 8-111 153-267 (353)
88 PRK01037 trmD tRNA (guanine-N( 98.8 3.8E-08 8.2E-13 81.2 10.5 103 16-138 250-355 (357)
89 PLN02875 4-hydroxyphenylpyruva 98.7 7.9E-08 1.7E-12 81.5 10.0 103 9-111 176-295 (398)
90 COG2764 PhnB Uncharacterized p 98.7 7.8E-07 1.7E-11 64.7 13.7 119 17-139 4-133 (136)
91 KOG2943 Predicted glyoxalase [ 98.7 7.8E-08 1.7E-12 74.9 8.6 116 12-138 16-144 (299)
92 PF14506 CppA_N: CppA N-termin 98.7 6.8E-07 1.5E-11 62.7 12.2 114 16-139 3-116 (125)
93 COG2514 Predicted ring-cleavag 98.7 1.7E-07 3.7E-12 74.5 9.4 98 11-135 166-264 (265)
94 KOG2943 Predicted glyoxalase [ 98.6 3.4E-07 7.5E-12 71.4 8.9 114 14-138 150-271 (299)
95 PF13468 Glyoxalase_3: Glyoxal 98.5 6.6E-07 1.4E-11 67.9 7.5 123 14-137 1-137 (175)
96 PLN02875 4-hydroxyphenylpyruva 98.4 4.8E-06 1E-10 70.8 12.7 171 14-192 1-199 (398)
97 PF14696 Glyoxalase_5: Hydroxy 98.3 1.9E-06 4.1E-11 62.9 6.4 124 6-138 2-127 (139)
98 PRK10148 hypothetical protein; 98.1 0.00036 7.8E-09 51.5 14.8 117 17-141 5-145 (147)
99 KOG0638 4-hydroxyphenylpyruvat 98.0 2.6E-05 5.7E-10 63.4 8.3 127 10-136 14-147 (381)
100 COG3185 4-hydroxyphenylpyruvat 97.9 1.4E-05 3E-10 65.8 4.3 103 9-111 163-274 (363)
101 COG3185 4-hydroxyphenylpyruvat 97.5 0.0012 2.6E-08 54.7 10.5 119 5-129 14-142 (363)
102 PF13669 Glyoxalase_4: Glyoxal 97.4 0.00027 5.8E-09 49.2 4.3 82 84-189 1-84 (109)
103 KOG0638 4-hydroxyphenylpyruvat 97.0 0.00091 2E-08 54.6 4.0 100 9-111 174-291 (381)
104 PF15067 FAM124: FAM124 family 96.4 0.013 2.9E-07 46.0 6.8 104 13-133 128-234 (236)
105 PF14507 CppA_C: CppA C-termin 95.9 0.018 3.9E-07 39.6 4.7 92 13-133 5-99 (101)
106 PF06983 3-dmu-9_3-mt: 3-demet 94.9 0.67 1.5E-05 32.6 10.2 96 22-135 11-116 (116)
107 cd07250 HPPD_C_like C-terminal 94.8 0.12 2.7E-06 39.6 6.8 92 82-189 3-99 (191)
108 cd08352 Glo_EDI_BRP_like_1 Thi 92.7 2.1 4.5E-05 29.2 9.3 57 82-139 3-60 (125)
109 cd08346 PcpA_N_like N-terminal 92.2 1.9 4E-05 29.5 8.6 58 82-139 1-62 (126)
110 TIGR03645 glyox_marine lactoyl 91.6 2.4 5.1E-05 31.4 9.0 88 81-170 3-113 (162)
111 cd08353 Glo_EDI_BRP_like_7 Thi 91.6 2.4 5.2E-05 30.1 8.8 57 82-138 3-70 (142)
112 PF13670 PepSY_2: Peptidase pr 90.4 1.5 3.2E-05 28.8 6.1 46 92-139 30-75 (83)
113 PF13468 Glyoxalase_3: Glyoxal 90.4 0.48 1E-05 35.6 4.2 53 83-137 1-54 (175)
114 cd07245 Glo_EDI_BRP_like_9 Thi 89.6 3.3 7.2E-05 27.4 7.7 83 83-170 1-84 (114)
115 cd06587 Glo_EDI_BRP_like This 89.4 1.3 2.9E-05 29.0 5.5 52 85-140 1-53 (112)
116 cd07237 BphC1-RGP6_C_like C-te 86.9 2.2 4.9E-05 31.2 5.7 57 80-136 7-67 (154)
117 cd08347 PcpA_C_like C-terminal 85.1 9.2 0.0002 28.1 8.3 52 82-138 1-54 (157)
118 cd07233 Glyoxalase_I Glyoxalas 84.8 9.8 0.00021 25.7 8.6 55 83-138 1-59 (121)
119 cd07242 Glo_EDI_BRP_like_6 Thi 83.8 10 0.00022 26.1 7.7 52 82-139 1-56 (128)
120 KOG2944 Glyoxalase [Carbohydra 83.0 1 2.2E-05 33.5 2.2 28 11-38 40-67 (170)
121 PRK11700 hypothetical protein; 82.4 18 0.00038 27.8 8.8 75 12-91 38-119 (187)
122 cd07249 MMCE Methylmalonyl-CoA 82.3 7.6 0.00016 26.5 6.6 55 83-138 1-56 (128)
123 cd07241 Glo_EDI_BRP_like_3 Thi 82.2 13 0.00028 25.2 8.5 54 83-138 2-57 (125)
124 PF00903 Glyoxalase: Glyoxalas 81.2 14 0.00031 24.9 7.8 57 82-139 1-59 (128)
125 cd07257 THT_oxygenase_C The C- 80.7 6.9 0.00015 28.5 6.1 27 83-109 2-29 (153)
126 cd07268 Glo_EDI_BRP_like_4 Thi 80.0 21 0.00047 26.3 9.9 73 14-91 2-81 (149)
127 cd04895 ACT_ACR_1 ACT domain-c 79.2 5.9 0.00013 25.4 4.6 40 93-132 15-55 (72)
128 cd07262 Glo_EDI_BRP_like_19 Th 78.1 19 0.00041 24.5 7.8 80 83-168 1-85 (123)
129 PF06185 YecM: YecM protein; 77.6 9.6 0.00021 29.2 6.0 75 12-91 33-114 (185)
130 PLN02367 lactoylglutathione ly 76.7 14 0.00029 29.5 6.9 54 12-67 168-223 (233)
131 cd08342 HPPD_N_like N-terminal 75.8 15 0.00033 25.9 6.6 56 12-68 68-125 (136)
132 PRK11478 putative lyase; Provi 75.2 21 0.00046 24.4 7.1 29 12-41 74-102 (129)
133 PLN03042 Lactoylglutathione ly 74.9 17 0.00038 27.7 7.0 31 12-43 120-150 (185)
134 cd07263 Glo_EDI_BRP_like_16 Th 74.0 23 0.0005 23.5 7.7 50 85-136 1-53 (119)
135 PRK10291 glyoxalase I; Provisi 73.7 22 0.00048 24.6 6.9 55 12-67 64-121 (129)
136 TIGR03081 metmalonyl_epim meth 73.3 16 0.00034 25.0 6.0 30 12-42 71-100 (128)
137 cd08360 MhqB_like_C C-terminal 69.3 23 0.0005 24.8 6.2 32 12-43 61-94 (134)
138 cd04897 ACT_ACR_3 ACT domain-c 68.3 16 0.00034 23.6 4.6 40 93-132 15-55 (75)
139 cd08343 ED_TypeI_classII_C C-t 67.5 20 0.00044 24.9 5.6 52 84-137 1-54 (131)
140 cd07255 Glo_EDI_BRP_like_12 Th 67.5 36 0.00077 23.1 8.6 51 82-139 2-54 (125)
141 PF02208 Sorb: Sorbin homologo 63.0 3.4 7.3E-05 23.9 0.6 27 9-35 7-33 (47)
142 cd08348 BphC2-C3-RGP6_C_like T 60.5 53 0.0012 22.6 8.1 52 83-139 2-56 (134)
143 PF07063 DUF1338: Domain of un 58.7 26 0.00055 29.1 5.3 30 79-108 181-216 (302)
144 TIGR00068 glyox_I lactoylgluta 56.8 59 0.0013 23.2 6.5 31 12-43 85-115 (150)
145 cd04882 ACT_Bt0572_2 C-termina 56.1 28 0.00062 20.7 4.1 26 82-107 39-64 (65)
146 cd08358 Glo_EDI_BRP_like_21 Th 55.9 71 0.0015 22.7 8.4 58 82-139 2-73 (127)
147 cd08344 MhqB_like_N N-terminal 55.8 49 0.0011 22.1 5.7 28 82-109 2-29 (112)
148 cd08364 FosX FosX, a fosfomyci 55.8 67 0.0015 22.3 6.8 83 81-169 3-87 (131)
149 cd07235 MRD Mitomycin C resist 54.5 64 0.0014 21.7 7.4 49 83-136 1-49 (122)
150 cd08359 Glo_EDI_BRP_like_22 Th 54.1 64 0.0014 21.6 6.5 27 16-43 69-95 (119)
151 PRK03094 hypothetical protein; 50.6 59 0.0013 21.4 4.9 48 89-136 5-53 (80)
152 PRK04101 fosfomycin resistance 50.4 86 0.0019 22.0 7.5 80 82-170 4-85 (139)
153 cd09014 BphC-JF8_C_like C-term 47.6 1.1E+02 0.0024 22.4 7.3 30 81-110 5-35 (166)
154 cd07247 SgaA_N_like N-terminal 46.5 84 0.0018 20.8 6.8 32 12-44 60-91 (114)
155 PF03975 CheD: CheD chemotacti 45.8 42 0.00092 23.3 4.1 40 91-132 64-103 (114)
156 cd04883 ACT_AcuB C-terminal AC 44.8 60 0.0013 19.8 4.4 29 82-110 41-71 (72)
157 cd07258 PpCmtC_C C-terminal do 44.8 81 0.0017 22.5 5.6 33 11-43 54-88 (141)
158 KOG4657 Uncharacterized conser 43.8 19 0.00041 28.4 2.2 23 22-44 145-167 (246)
159 PF14907 NTP_transf_5: Unchara 43.2 1.2E+02 0.0026 23.6 6.8 82 86-184 97-180 (249)
160 cd07253 Glo_EDI_BRP_like_2 Thi 41.4 1E+02 0.0023 20.4 7.8 51 82-138 3-54 (125)
161 PF03698 UPF0180: Uncharacteri 41.0 85 0.0018 20.6 4.6 48 88-135 4-52 (80)
162 PRK13490 chemoreceptor glutami 40.7 54 0.0012 24.5 4.1 39 91-131 112-150 (162)
163 PRK13495 chemoreceptor glutami 40.6 54 0.0012 24.5 4.1 39 91-131 105-143 (159)
164 PRK13498 chemoreceptor glutami 38.5 61 0.0013 24.4 4.2 41 89-131 113-153 (167)
165 PRK13494 chemoreceptor glutami 38.3 63 0.0014 24.3 4.1 39 91-131 114-152 (163)
166 cd07243 2_3_CTD_C C-terminal d 38.1 1.2E+02 0.0027 21.5 5.7 29 82-110 6-35 (143)
167 cd07256 HPCD_C_class_II C-term 37.2 1.6E+02 0.0035 21.3 6.9 28 82-109 3-31 (161)
168 PRK13488 chemoreceptor glutami 35.9 73 0.0016 23.7 4.2 39 91-131 107-145 (157)
169 COG1871 CheD Chemotaxis protei 35.8 86 0.0019 23.5 4.4 43 88-132 111-153 (164)
170 PRK13491 chemoreceptor glutami 35.5 72 0.0016 24.8 4.2 40 92-133 116-155 (199)
171 PRK13497 chemoreceptor glutami 34.8 77 0.0017 24.3 4.2 38 92-131 113-150 (184)
172 cd04927 ACT_ACR-like_2 Second 34.7 1.2E+02 0.0026 19.2 5.2 38 93-130 14-53 (76)
173 cd04896 ACT_ACR-like_3 ACT dom 34.3 1.1E+02 0.0024 19.7 4.3 38 93-131 14-54 (75)
174 cd07264 Glo_EDI_BRP_like_15 Th 33.6 1.5E+02 0.0032 19.8 6.7 28 15-43 73-100 (125)
175 cd04906 ACT_ThrD-I_1 First of 33.4 91 0.002 20.2 4.0 28 83-110 41-72 (85)
176 PRK13493 chemoreceptor glutami 32.7 81 0.0018 24.8 4.1 38 92-131 140-177 (213)
177 cd07238 Glo_EDI_BRP_like_5 Thi 32.2 1.5E+02 0.0032 19.5 7.2 30 14-44 58-87 (112)
178 PRK13487 chemoreceptor glutami 32.2 86 0.0019 24.4 4.2 39 91-131 127-165 (201)
179 PHA02097 hypothetical protein 31.0 45 0.00097 19.9 1.8 14 123-136 45-58 (59)
180 COG4747 ACT domain-containing 30.8 57 0.0012 23.3 2.7 89 12-111 40-137 (142)
181 PRK09437 bcp thioredoxin-depen 30.2 2E+02 0.0044 20.4 5.8 56 82-137 64-138 (154)
182 KOG2792 Putative cytochrome C 29.7 80 0.0017 25.7 3.7 19 119-137 242-260 (280)
183 PF06923 GutM: Glucitol operon 29.5 73 0.0016 22.1 3.1 54 89-142 22-75 (109)
184 PRK13489 chemoreceptor glutami 29.4 1E+02 0.0022 24.6 4.2 38 92-131 126-163 (233)
185 COG5301 Phage-related tail fib 29.1 80 0.0017 28.0 3.8 38 111-149 80-117 (587)
186 PHA02754 hypothetical protein; 28.4 1.5E+02 0.0032 18.2 4.5 42 93-137 20-62 (67)
187 COG0450 AhpC Peroxiredoxin [Po 28.2 1E+02 0.0022 23.8 3.9 22 115-136 120-141 (194)
188 PRK10234 DNA-binding transcrip 27.5 88 0.0019 22.2 3.2 54 89-142 23-76 (118)
189 PF11823 DUF3343: Protein of u 26.4 1.2E+02 0.0026 19.0 3.5 26 84-109 41-68 (73)
190 COG4009 Uncharacterized protei 26.3 1.3E+02 0.0028 19.8 3.5 29 82-110 49-79 (88)
191 PF07494 Reg_prop: Two compone 25.6 85 0.0018 15.1 2.1 12 121-132 8-19 (24)
192 TIGR00318 cyaB adenylyl cyclas 25.6 1.3E+02 0.0028 22.5 4.1 38 86-129 6-43 (174)
193 PF02630 SCO1-SenC: SCO1/SenC; 25.6 71 0.0015 23.9 2.7 18 120-137 156-173 (174)
194 PF08415 NRPS: Nonribosomal pe 24.9 33 0.00072 20.7 0.6 23 159-181 7-30 (58)
195 PF08445 FR47: FR47-like prote 24.0 1.4E+02 0.003 19.3 3.6 21 21-42 62-82 (86)
196 COG5397 Uncharacterized conser 23.6 70 0.0015 26.3 2.4 54 82-137 157-211 (349)
197 PRK06704 RNA polymerase factor 23.0 65 0.0014 25.4 2.1 44 87-135 183-226 (228)
198 PF13225 DUF4033: Domain of un 22.8 98 0.0021 20.6 2.5 25 27-51 49-73 (86)
199 cd04908 ACT_Bt0572_1 N-termina 22.4 1.9E+02 0.0041 17.4 3.8 24 85-108 42-65 (66)
200 PF12687 DUF3801: Protein of u 22.2 2.2E+02 0.0049 22.0 4.9 48 81-128 32-79 (204)
201 COG0456 RimI Acetyltransferase 21.9 1.3E+02 0.0027 21.7 3.4 29 15-44 127-156 (177)
202 PF15584 Imm44: Immunity prote 21.8 52 0.0011 22.2 1.1 44 139-192 5-50 (94)
203 PF00585 Thr_dehydrat_C: C-ter 21.5 1.4E+02 0.003 19.8 3.2 31 81-111 49-82 (91)
204 cd04886 ACT_ThrD-II-like C-ter 21.4 1.7E+02 0.0037 17.2 3.5 24 85-108 46-72 (73)
205 cd04885 ACT_ThrD-I Tandem C-te 21.2 1.7E+02 0.0037 17.8 3.4 27 82-108 38-67 (68)
206 TIGR01570 A_thal_3588 uncharac 21.1 68 0.0015 23.9 1.7 13 118-130 137-149 (161)
207 PF00583 Acetyltransf_1: Acety 20.7 1.2E+02 0.0027 18.5 2.8 25 13-38 58-83 (83)
208 PRK03467 hypothetical protein; 20.6 3.5E+02 0.0076 19.8 5.5 49 92-140 6-54 (144)
209 PF04759 DUF617: Protein of un 20.6 67 0.0014 24.1 1.6 14 118-131 142-155 (166)
210 cd01939 Ketohexokinase Ketohex 20.2 4.5E+02 0.0097 20.9 6.6 47 93-139 65-111 (290)
No 1
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.93 E-value=4.4e-25 Score=173.43 Aligned_cols=168 Identities=19% Similarity=0.257 Sum_probs=137.1
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeC
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE 91 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~ 91 (195)
+.++.++|.|+|++++..||+++||+++..+.+. .. .+..|.. .|+.....+..... .....|++|+||.+|
T Consensus 9 ~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~~----~v--~L~vgg~-~LL~L~q~~~a~~~-~~~~aGLyH~AfLlP 80 (265)
T COG2514 9 TFVGAVTLNVRDLDSMTSFYQEILGLQVLEETDG----SV--TLGVGGT-PLLTLEQFPDARRP-PPRAAGLYHTAFLLP 80 (265)
T ss_pred cEEEEEEEEeccHHHHHHHHHHhhCCeeeeccCc----eE--EEeeCCE-EEEEEEeCCCCCCC-CccccceeeeeeecC
Confidence 5688999999999999999999999999998763 22 4555544 33222221111111 156789999999999
Q ss_pred ---CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCCCCCCCCCCcchhhcccccccchhhhhhhh
Q 029305 92 ---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVVPLAGDAVRIRSCTSTVNCNFHQQQI 168 (195)
Q Consensus 92 ---dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 168 (195)
|+..++.++.+.|+++.+.. ..+.++++||.||+||.||||.+++.+.|.+..+ .+.|.+ .++|++.++...
T Consensus 81 ~r~~L~~~l~hl~~~~~~l~Ga~---DH~vSEAlYl~DPEGNGIEiYaDrp~~~W~~~~~-~v~m~t-~~ld~~~ll~~~ 155 (265)
T COG2514 81 TREDLARVLNHLAEEGIPLVGAS---DHLVSEALYLEDPEGNGIEIYADRPRSTWDWQND-QVKMDT-EPLDVEALLEEA 155 (265)
T ss_pred CHHHHHHHHHHHHhcCCcccccC---cchhheeeeecCCCCCeEEEEecCChHHhcccCC-eeeecc-cccCHHHHhhhc
Confidence 79999999999999998654 3446799999999999999999999999999877 899998 999999999987
Q ss_pred hhcC--------CCCCCCcccccccccccccc
Q 029305 169 QQEP--------QINPQSCLSDSIHAKEDFLH 192 (195)
Q Consensus 169 ~~~~--------~~~~~~~~~~~~~~~~~~~~ 192 (195)
+.+| .|-|+-..+-|+.++..||.
T Consensus 156 ~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~ 187 (265)
T COG2514 156 TKEPWTGLPAGTIIGHVHLKVADLEEAEQFYE 187 (265)
T ss_pred cccccccCCCCcEEeEEEEEeCCHHHHHHHHH
Confidence 7444 58999999999999999985
No 2
>PRK11478 putative lyase; Provisional
Probab=99.86 E-value=1.9e-20 Score=134.70 Aligned_cols=125 Identities=22% Similarity=0.308 Sum_probs=89.0
Q ss_pred CcccCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEE---EeecCcEEEEeeeCCCCCCCCCCCCCCCCce
Q 029305 8 PLCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACR---LFNYGMGIHLLKSEEPDNLPKAGKNINPKDN 84 (195)
Q Consensus 8 ~~~i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~---~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~ 84 (195)
++.+.+|+||.|.|+|++++.+||+++|||++..+.... ....|. .+..+..+++++...+...+. . ....|..
T Consensus 1 ~~~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~-~-~~~~g~~ 77 (129)
T PRK11478 1 MLGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYRE-ARDSWKGDLALNGQYVIELFSFPFPPERPS-R-PEACGLR 77 (129)
T ss_pred CCCcceecEEEEEcCCHHHHHHHHHHHhCCEeccccccc-ccccceeeEecCCCcEEEEEEecCCCCCCC-C-CCCCcee
Confidence 357889999999999999999999999999986532111 011221 233345677766543322111 1 3345788
Q ss_pred EEEEEeCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEe
Q 029305 85 HISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 136 (195)
Q Consensus 85 Hiaf~v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~ 136 (195)
|+||.|+|+++++++|+++|+++...... ...+.+.+||.|||||.|||++
T Consensus 78 hi~f~v~d~~~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 78 HLAFSVDDIDAAVAHLESHNVKCEAIRVD-PYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEEEEeCCHHHHHHHHHHcCCeeeccccC-CCCCCEEEEEECCCCCEEEEEe
Confidence 99999999999999999999998654321 2224478999999999999987
No 3
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.83 E-value=3.6e-19 Score=130.42 Aligned_cols=125 Identities=17% Similarity=0.269 Sum_probs=90.2
Q ss_pred cCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCC--------CCC---ccEEEee---cCcEEEEeeeCCCCCCCC--
Q 029305 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSF--------DFD---GACRLFN---YGMGIHLLKSEEPDNLPK-- 74 (195)
Q Consensus 11 i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~--------~~~---~~~~~~~---~g~~~~ll~~~~~~~~~~-- 74 (195)
+++++||.|.|+|+++|.+||++ |||++..+.... +.. ..+..+. .+..++|++...+...+.
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~~~~ 79 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIADHR 79 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcCcCC
Confidence 46899999999999999999999 999886553210 011 1111222 235688887554432221
Q ss_pred CCCCCCCCceEEEEEeCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEec
Q 029305 75 AGKNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 137 (195)
Q Consensus 75 ~~~~~~~g~~Hiaf~v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~ 137 (195)
.......|..|+||.|+|+++++++|+++|+++..++.. ...+.+.+||+||||+.|||++.
T Consensus 80 ~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~-~~~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 80 PAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQ-YENSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCcee-cCCCeEEEEEECCCCCEEEeeec
Confidence 111345678999999999999999999999999876533 23456889999999999999984
No 4
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.83 E-value=2.5e-19 Score=132.11 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=82.4
Q ss_pred cccCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCC---CccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceE
Q 029305 9 LCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDF---DGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNH 85 (195)
Q Consensus 9 ~~i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~---~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~H 85 (195)
+.+.+|+||+|.|+|+++|.+||+++|||++..+....+. .+.| +..+...+.+.... ...+++.|
T Consensus 2 ~~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~--l~~~~~~h~~~~~~---------~~~~~~~H 70 (143)
T cd07243 2 IGAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSF--LSCSNKPHDIAFVG---------GPDGKLHH 70 (143)
T ss_pred CCCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEE--EecCCCcceEEEec---------CCCCCceE
Confidence 3568899999999999999999999999997665321100 1223 22222233332211 11357899
Q ss_pred EEEEeCCHHH---HHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEec
Q 029305 86 ISFQCENMAI---VERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 137 (195)
Q Consensus 86 iaf~v~dl~~---~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~ 137 (195)
+||.|+++++ +.++|+++|+++...+...+..+.+.+||.|||||.|||+..
T Consensus 71 iaf~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 71 FSFFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 9999998877 568999999998755532221235789999999999999875
No 5
>PLN02300 lactoylglutathione lyase
Probab=99.82 E-value=1.4e-19 Score=147.80 Aligned_cols=147 Identities=16% Similarity=0.199 Sum_probs=103.6
Q ss_pred cccCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCC--CCCccEEEeecC---c--EEEEeeeCCCCCCCCCCCCCCC
Q 029305 9 LCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSF--DFDGACRLFNYG---M--GIHLLKSEEPDNLPKAGKNINP 81 (195)
Q Consensus 9 ~~i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~--~~~~~~~~~~~g---~--~~~ll~~~~~~~~~~~~~~~~~ 81 (195)
+.+.+|+|+.|.|+|++++++||+++|||++..+.... .+...| +..+ . .+.+.... ... .. ....
T Consensus 20 ~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~--l~~g~~~~~~~lel~~~~---~~~-~~-~~~~ 92 (286)
T PLN02300 20 KDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAF--LGYGPEDSNFVVELTYNY---GVD-KY-DIGT 92 (286)
T ss_pred cccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEE--EccCCCCCceEEEEeccC---CCC-cc-ccCC
Confidence 56899999999999999999999999999987653211 111223 2222 1 12222111 111 11 3456
Q ss_pred CceEEEEEeCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCCCCCCCCCCcchhhcccccccch
Q 029305 82 KDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVVPLAGDAVRIRSCTSTVNC 161 (195)
Q Consensus 82 g~~Hiaf~v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~~~~~p~~~~~~~~~~~~~~~~~ 161 (195)
+..|++|.|+|++++.++|+++|+++...+....+.+.+.+||.|||||.|||++....
T Consensus 93 g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~--------------------- 151 (286)
T PLN02300 93 GFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPT--------------------- 151 (286)
T ss_pred CccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCC---------------------
Confidence 78999999999999999999999998876643322234678999999999999984211
Q ss_pred hhhhhhhhhcCCCCCCCcccccccccccccc
Q 029305 162 NFHQQQIQQEPQINPQSCLSDSIHAKEDFLH 192 (195)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (195)
+..+.|+.+.++|++++.+||.
T Consensus 152 ---------~~~~~~~~l~~~d~~~a~~Fy~ 173 (286)
T PLN02300 152 ---------PEPLCQVMLRVGDLDRSIKFYE 173 (286)
T ss_pred ---------CCcceeEEEEeCCHHHHHHHHH
Confidence 1245678888888888888884
No 6
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.82 E-value=4.7e-19 Score=133.27 Aligned_cols=127 Identities=18% Similarity=0.306 Sum_probs=87.4
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeecCCC---C----C------CCc-----cEEEe--ecCcEEEEeeeCCCCC
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGS---F----D------FDG-----ACRLF--NYGMGIHLLKSEEPDN 71 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~---~----~------~~~-----~~~~~--~~g~~~~ll~~~~~~~ 71 (195)
.+|+||+|.|+|+++|++||+++|||++..+... . . +.. .+..+ ..+..++|++...+..
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~~ 82 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQEN 82 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCCC
Confidence 5789999999999999999999999987532110 0 0 000 11122 2345688887765432
Q ss_pred CCCCCCCCCCCceEEEEEeCCHHHHHHHHHhCCCeEecccee---cCCcceEEEEEECCCCCEEEEEecC
Q 029305 72 LPKAGKNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVE---EGGINVDQLFFHDPDGSMIEICNCD 138 (195)
Q Consensus 72 ~~~~~~~~~~g~~Hiaf~v~dl~~~~~~l~~~gv~~~~~~~~---~~~~~~~~~~~~DPdGn~iEi~~~~ 138 (195)
..........|+.|+||.|+|+++++++|+++|+++...+.. .+....+.+||+|||||.|||++..
T Consensus 83 ~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 152 (162)
T TIGR03645 83 PEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHS 152 (162)
T ss_pred CCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcC
Confidence 221111235789999999999999999999999876443211 1111237899999999999999864
No 7
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.81 E-value=6.3e-19 Score=125.56 Aligned_cols=120 Identities=18% Similarity=0.259 Sum_probs=83.7
Q ss_pred ccceEEEEcCCHHHHHHHHHhccCCeEeecCC--CCCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEEe
Q 029305 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPG--SFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQC 90 (195)
Q Consensus 13 ~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~--~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v 90 (195)
+|+||.|.|+|++++++||+++|||++..+.. ...+...|..+..+..+++++.......+ .. ....|..|+||.|
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~g~~hi~f~v 78 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTRPDIAPSP-NE-GERTGWAHLAFSV 78 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcCcccCCCc-cc-CCCCceEEEEEEC
Confidence 47899999999999999999999999764421 12222334223334567777543221111 11 3446789999999
Q ss_pred C---CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEE
Q 029305 91 E---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 135 (195)
Q Consensus 91 ~---dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~ 135 (195)
+ ++++++++|+++|+++...+.. .+.+.+.++++|||||.|||.
T Consensus 79 ~~~~~v~~~~~~l~~~g~~~~~~~~~-~~~g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 79 GSKEAVDELTERLRADGYLIIGEPRT-TGDGYYESVILDPEGNRIEIT 125 (125)
T ss_pred CCHHHHHHHHHHHHHCCCEEEeCcee-cCCCeEEEEEECCCCCEEEeC
Confidence 6 5899999999999998875532 223445678999999999984
No 8
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.81 E-value=2.8e-18 Score=122.62 Aligned_cols=121 Identities=28% Similarity=0.371 Sum_probs=86.6
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCc-EEEEeeeCCCCCCCCCCCCCCCCceEEEEEe
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGM-GIHLLKSEEPDNLPKAGKNINPKDNHISFQC 90 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~-~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v 90 (195)
++|+||.|.|+|++++.+||+++|||++....+ ... .+..+. ..++.....+.. .... ....+..|++|.|
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~~--~l~~~~~~~~l~l~~~~~~-~~~~-~~~~~~~hi~f~v 72 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD----STA--VLGTGGKRPLLVLEEDPDA-PPAP-PGATGLYHFAILL 72 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC----CEE--EEecCCCeEEEEEEeCCCC-Cccc-CCCCcEEEEEEEC
Confidence 478999999999999999999999999987743 223 333332 223222222211 1111 4456789999999
Q ss_pred C---CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCCCCCC
Q 029305 91 E---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVV 143 (195)
Q Consensus 91 ~---dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~~~~~ 143 (195)
+ ++++++++|.++|+++.... ..+ ..+.+||.|||||.|||....+...|
T Consensus 73 ~~~~~v~~~~~~l~~~g~~~~~~~--~~~-~~~~~~~~DPdG~~iEi~~~~~~~~~ 125 (125)
T cd07255 73 PSRADLAAALRRLIELGIPLVGAS--DHL-VSEALYLSDPEGNGIEIYADRPREEW 125 (125)
T ss_pred CCHHHHHHHHHHHHHcCCceeccc--ccc-ceeEEEEECCCCCEEEEEEecCccCC
Confidence 8 58999999999999876543 222 23789999999999999998776554
No 9
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.81 E-value=1.9e-18 Score=129.35 Aligned_cols=120 Identities=21% Similarity=0.325 Sum_probs=86.3
Q ss_pred ccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeec---CcEEEEeeeCCCCCCCCCCCCCCCCceEEEEE
Q 029305 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNY---GMGIHLLKSEEPDNLPKAGKNINPKDNHISFQ 89 (195)
Q Consensus 13 ~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~---g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~ 89 (195)
+|+||+|.|+|++++.+||+++|||++..+... ...| .... +..+.+.+.... .... ....++.|+||.
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~~---~~~~-~~~~~~~~~~l~l~~~~~~---~~~~-~~~~~l~Hiaf~ 72 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEGD---RVRL-EEGGGGPGAVVDVLEEPDQ---PRGR-PGAGTVHHVAFR 72 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeCC---EEEE-EecCCCCCCEEEEEeCCCC---CCCc-ccCCceEEEEEE
Confidence 589999999999999999999999999876431 1122 2221 455666654311 1111 334678999999
Q ss_pred eCC---HHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCCCCCC
Q 029305 90 CEN---MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVV 143 (195)
Q Consensus 90 v~d---l~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~~~~~ 143 (195)
|+| +++++++|++.|+++.... ..+ +.+++||.|||||.|||+.+.+...|
T Consensus 73 v~d~~dvd~~~~~L~~~Gv~~~~~~--~~~-~~~s~yf~DPdG~~iEl~~~~~~~~~ 126 (157)
T cd08347 73 VPDDEELEAWKERLEALGLPVSGIV--DRF-YFKSLYFREPGGILFEIATDGPGFTV 126 (157)
T ss_pred CCCHHHHHHHHHHHHHCCCCccccc--ccc-cEEEEEEECCCCcEEEEEECCCCccc
Confidence 997 9999999999999864432 222 34789999999999999998654433
No 10
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.80 E-value=2.6e-18 Score=122.12 Aligned_cols=121 Identities=26% Similarity=0.468 Sum_probs=87.4
Q ss_pred cCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeec-CcEEEEeeeCCCCCCCCCCCCCCCCceEEEEE
Q 029305 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNY-GMGIHLLKSEEPDNLPKAGKNINPKDNHISFQ 89 (195)
Q Consensus 11 i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~-g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~ 89 (195)
+++|+|+.|.|+|++++++||+++|||+...+.+.. ... .+.. +..+++...... ..+... ....+..|++|.
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~---~~~-~~~~~~~~~~l~~~~~~-~~~~~~-~~~~~~~hi~~~ 74 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV---GRK-ALRFGSQKINLHPVGGE-FEPAAG-SPGPGSDDLCLI 74 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC---Cce-EEEeCCEEEEEecCCCc-cCcCcc-CCCCCCceEEEE
Confidence 468999999999999999999999999998765421 121 2333 345555543322 111111 345678999999
Q ss_pred eC-CHHHHHHHHHhCCCeEeccceecCC--cceEEEEEECCCCCEEEEEec
Q 029305 90 CE-NMAIVERRLKEMKIDYVKSRVEEGG--INVDQLFFHDPDGSMIEICNC 137 (195)
Q Consensus 90 v~-dl~~~~~~l~~~gv~~~~~~~~~~~--~~~~~~~~~DPdGn~iEi~~~ 137 (195)
++ ++++++++|+++|+++...+....+ ...+.+||.|||||.||++++
T Consensus 75 ~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 75 TEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSNY 125 (125)
T ss_pred ecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeeeC
Confidence 98 4999999999999998766543221 234789999999999999873
No 11
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.80 E-value=1.3e-18 Score=126.99 Aligned_cols=123 Identities=15% Similarity=0.157 Sum_probs=88.2
Q ss_pred cceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecC-cEEEEeeeCCCCCCCC-CCCCCCCCceEEEEEeC
Q 029305 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYG-MGIHLLKSEEPDNLPK-AGKNINPKDNHISFQCE 91 (195)
Q Consensus 14 i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g-~~~~ll~~~~~~~~~~-~~~~~~~g~~Hiaf~v~ 91 (195)
|+|+.|.|+|++++.+||+++|||++..+.... ...+..+..+ ..+.+........... .......+..|++|.|+
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia~~V~ 78 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQGDINFVLNSPLNSFAPVADFLEKHGDGVCDVAFRVD 78 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEcCCEEEEEecCCCCCCchHHHHHhcCCceEEEEEEeC
Confidence 589999999999999999999999998765421 1122233333 3344433222111100 00124567899999999
Q ss_pred CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCC
Q 029305 92 NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 139 (195)
Q Consensus 92 dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~ 139 (195)
|+++++++|+++|+++..++.. ..++.+.++++||||+.|||++...
T Consensus 79 Dvda~~~~l~~~G~~v~~~p~~-~~~~~~~~~i~dp~G~~ie~~~~~~ 125 (136)
T cd08342 79 DAAAAYERAVARGAKPVQEPVE-EPGELKIAAIKGYGDSLHTLVDRKG 125 (136)
T ss_pred CHHHHHHHHHHcCCeEccCcee-cCCeEEEEEEeccCCcEEEEEecCC
Confidence 9999999999999999987755 2346689999999999999999543
No 12
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.80 E-value=3.5e-18 Score=121.41 Aligned_cols=122 Identities=26% Similarity=0.436 Sum_probs=87.1
Q ss_pred cCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEE-Ee--ecCcEEEEeeeCCCCCCCCCCCCCCCCceEEE
Q 029305 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACR-LF--NYGMGIHLLKSEEPDNLPKAGKNINPKDNHIS 87 (195)
Q Consensus 11 i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~-~~--~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hia 87 (195)
+.+|+||.|.|.|++++++||+++|||++..+....+ ...|. .+ ..+..++++........+. .....|..|++
T Consensus 1 ~~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~i~l~~~~~~~~~~~--~~~~~g~~h~~ 77 (125)
T cd08352 1 LFGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPE-RGSYKLDLLLNGGYQLELFSFPNPPERPS--YPEACGLRHLA 77 (125)
T ss_pred CCccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCC-CCcEEEEEecCCCcEEEEEEcCCCCCCCC--CCcCCCceEEE
Confidence 4679999999999999999999999999876532111 12331 12 2345566665443221111 13456789999
Q ss_pred EEeCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEe
Q 029305 88 FQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 136 (195)
Q Consensus 88 f~v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~ 136 (195)
|.|+|+++++++|+++|+++...+.. ...+.+.+|+.||+||.|||++
T Consensus 78 ~~v~d~~~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 78 FSVEDIEAAVKHLKAKGVEVEPIRVD-EFTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EEeCCHHHHHHHHHHcCCcccccccc-CCCceEEEEEECCCCCEEEecC
Confidence 99999999999999999998765422 2234568999999999999975
No 13
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.80 E-value=2e-18 Score=128.06 Aligned_cols=128 Identities=21% Similarity=0.285 Sum_probs=86.3
Q ss_pred ccCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecC--cEEEEeeeCCCCCCCCCCCCCCCCceEEE
Q 029305 10 CLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYG--MGIHLLKSEEPDNLPKAGKNINPKDNHIS 87 (195)
Q Consensus 10 ~i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g--~~~~ll~~~~~~~~~~~~~~~~~g~~Hia 87 (195)
..++|+||.|.|+|++++.+||+++|||++..+....+....+..+..+ .....+.......... .....+..|++
T Consensus 14 ~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~g~~hi~ 91 (150)
T TIGR00068 14 KKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEK--YDLGNGFGHIA 91 (150)
T ss_pred CCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCc--ccCCCceeEEE
Confidence 4688999999999999999999999999987654311111111123222 1111222211101111 12345789999
Q ss_pred EEeCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCC
Q 029305 88 FQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 139 (195)
Q Consensus 88 f~v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~ 139 (195)
|.|+|+++++++|.++|+++...+....+.+.+.+||.|||||.|||++..+
T Consensus 92 f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 143 (150)
T TIGR00068 92 IGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKS 143 (150)
T ss_pred EecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCc
Confidence 9999999999999999999877653323224468899999999999998643
No 14
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.80 E-value=2.4e-18 Score=124.88 Aligned_cols=118 Identities=19% Similarity=0.378 Sum_probs=84.3
Q ss_pred ccCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCC---ccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEE
Q 029305 10 CLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFD---GACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHI 86 (195)
Q Consensus 10 ~i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~---~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hi 86 (195)
|+.+|+||.|.|+|+++|.+||+++|||+...+.+...+. ..| ....+..+.+..... ....+..|+
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~~~~~---------~~~~~~~Hi 70 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKF-FLIGGLWIAIMEGDS---------LQERTYNHI 70 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeE-EEcCCeEEEEecCCC---------CCCCCceEE
Confidence 4678999999999999999999999999887665422111 112 222233444432111 112368999
Q ss_pred EEEeC--CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecC
Q 029305 87 SFQCE--NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 138 (195)
Q Consensus 87 af~v~--dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~ 138 (195)
||.|+ +++++.++|+++|+++........+ .++.+||.|||||.|||....
T Consensus 71 af~v~~~~ld~~~~~l~~~gv~~~~~~~~~~~-~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 71 AFKISDSDVDEYTERIKALGVEMKPPRPRVQG-EGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred EEEcCHHHHHHHHHHHHHCCCEEecCCccccC-CceEEEEECCCCCEEEEecCC
Confidence 99998 7999999999999998654322222 347999999999999999753
No 15
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.80 E-value=3.2e-18 Score=131.06 Aligned_cols=128 Identities=22% Similarity=0.286 Sum_probs=90.2
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeecCCCC--CCCccEE------------------EeecCcEEEEeeeCCCCC
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSF--DFDGACR------------------LFNYGMGIHLLKSEEPDN 71 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~--~~~~~~~------------------~~~~g~~~~ll~~~~~~~ 71 (195)
-++.|+.|.|+|+++|++||+++|||++..+.... .+..++. ++..+..++|+......+
T Consensus 26 ~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~~ 105 (185)
T PLN03042 26 YIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTES 105 (185)
T ss_pred cEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCcc
Confidence 46899999999999999999999999988774311 1111110 111234688876543322
Q ss_pred CCC---CC--CCCCCCceEEEEEeCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCCCC
Q 029305 72 LPK---AG--KNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLP 141 (195)
Q Consensus 72 ~~~---~~--~~~~~g~~Hiaf~v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~~~ 141 (195)
.+. .. .....|+.|+||.|+|+++++++|+++|+++...+... .+...+|++|||||.|||++..+..
T Consensus 106 ~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~--~~~~~~fi~DPdG~~IEl~e~~~~~ 178 (185)
T PLN03042 106 DPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDG--KMKGLAFIKDPDGYWIEIFDLKRIG 178 (185)
T ss_pred cccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccC--CceeEEEEECCCCCEEEEEECCCch
Confidence 110 00 01235899999999999999999999999998665322 1235688899999999999987654
No 16
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.80 E-value=7.1e-19 Score=144.52 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=105.6
Q ss_pred cCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecC--cEEEEeeeCCCCCCCCCCCCCCCCceEEEE
Q 029305 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYG--MGIHLLKSEEPDNLPKAGKNINPKDNHISF 88 (195)
Q Consensus 11 i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g--~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf 88 (195)
+++|+||.|.|+|++++.+||+++|||++..+.+. ..+ +...+ ....+.... ....++.|++|
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~~----~~~-~~~~~~~~~~~~~l~~----------~~~~g~~hiaf 66 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDGQ----RVY-LKAWDEWDHYSVILTE----------ADTAGLDHMAF 66 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCc----eEE-EEeccccccceEeecc----------CCCCceeEEEE
Confidence 57899999999999999999999999999876542 222 11111 111111111 12346899999
Q ss_pred EeC---CHHHHHHHHHhCCCeEecccee-cCCcceEEEEEECCCCCEEEEEecCCCCCCCCCCcchhhcccccccchhhh
Q 029305 89 QCE---NMAIVERRLKEMKIDYVKSRVE-EGGINVDQLFFHDPDGSMIEICNCDVLPVVPLAGDAVRIRSCTSTVNCNFH 164 (195)
Q Consensus 89 ~v~---dl~~~~~~l~~~gv~~~~~~~~-~~~~~~~~~~~~DPdGn~iEi~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 164 (195)
.|+ ++++++++|++.|+++...+.. ..+ +.+.+||.|||||.|||+.......++.... .. ......
T Consensus 67 ~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~-~g~~~~~~DPdG~~iEl~~~~~~~~~~~~~~-----~~-~~~~~~-- 137 (303)
T TIGR03211 67 KVESEADLERLVKRLEAYGVGTGWIPAGELPG-VGRRVRFTLPSGHTMELYAEKEYVGELVGGL-----NP-DPWPDP-- 137 (303)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeeeccCCCCCC-cceEEEEECCCCCEEEEEEcccccccccccc-----CC-cccccc--
Confidence 998 7999999999999998765421 122 2378999999999999999766433311111 00 111100
Q ss_pred hhhhhhcCCCCCCCcccccccccccccc
Q 029305 165 QQQIQQEPQINPQSCLSDSIHAKEDFLH 192 (195)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (195)
.......+|+|+.+.++|++++.+||.
T Consensus 138 -~~~~~~~~i~Hi~l~V~Dl~~s~~FY~ 164 (303)
T TIGR03211 138 -LRGVGARRLDHCLLYGEDVAENTRFFT 164 (303)
T ss_pred -cCCcCceeEEEEeEEeCCHHHHHHHHH
Confidence 111234579999999999999999994
No 17
>PLN02367 lactoylglutathione lyase
Probab=99.80 E-value=4.2e-18 Score=133.56 Aligned_cols=127 Identities=24% Similarity=0.329 Sum_probs=89.8
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeecCCCC--CCCccEE------------------EeecCcEEEEeeeCCCCC
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSF--DFDGACR------------------LFNYGMGIHLLKSEEPDN 71 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~--~~~~~~~------------------~~~~g~~~~ll~~~~~~~ 71 (195)
-.++|+.|.|+|+++|++||+++|||++..+.+.. .+..+|. .++.+..++|+...+...
T Consensus 74 ~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~ 153 (233)
T PLN02367 74 YIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTES 153 (233)
T ss_pred cEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCc
Confidence 35899999999999999999999999988764321 1111220 111234677776544332
Q ss_pred CC--C-CC--CCCCCCceEEEEEeCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCCC
Q 029305 72 LP--K-AG--KNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVL 140 (195)
Q Consensus 72 ~~--~-~~--~~~~~g~~Hiaf~v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~~ 140 (195)
.+ . .. .....|+.|+||.|+|+++++++|+++|+++...+.. + ...+.+|++|||||.|||++....
T Consensus 154 ~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~-g-~~~riaFIkDPDGn~IEL~e~~~~ 225 (233)
T PLN02367 154 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPND-G-KMKGIAFIKDPDGYWIEIFDLKTI 225 (233)
T ss_pred cccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCcc-C-CceEEEEEECCCCCEEEEEecccc
Confidence 11 0 10 0122589999999999999999999999999876632 2 224678999999999999997553
No 18
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.79 E-value=3e-18 Score=125.56 Aligned_cols=119 Identities=28% Similarity=0.481 Sum_probs=86.3
Q ss_pred ccCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEE
Q 029305 10 CLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQ 89 (195)
Q Consensus 10 ~i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~ 89 (195)
|+.+|+||.|.|+|++++++||+++|||++..+.+ ..++ +...+..+.+.... ..+. . ....+..|++|.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~----~~~~-~~~~g~~l~l~~~~---~~~~-~-~~~~~~~hiaf~ 70 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR----KTAY-FDLNGLWIALNEEK---DIPR-N-EIHQSYTHIAFS 70 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC----eeEE-EecCCeEEEeeccC---CCCC-c-cCCCCeeEEEEE
Confidence 46789999999999999999999999999986643 1222 22223333332211 1111 1 234567899999
Q ss_pred eC--CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCC
Q 029305 90 CE--NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 139 (195)
Q Consensus 90 v~--dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~ 139 (195)
++ ++++++++|+++|+++...+... ..+.+.+||.|||||.|||.+...
T Consensus 71 v~~~dv~~~~~~l~~~G~~i~~~~~~~-~~~~~~~~~~DPdGn~iEl~~~~~ 121 (139)
T PRK04101 71 IEEEDFDHWYQRLKENDVNILPGRERD-ERDKKSIYFTDPDGHKFEFHTGTL 121 (139)
T ss_pred ecHHHHHHHHHHHHHCCceEcCCcccc-CCCceEEEEECCCCCEEEEEeCCH
Confidence 98 99999999999999987654332 224589999999999999998643
No 19
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.79 E-value=4.3e-18 Score=118.55 Aligned_cols=114 Identities=38% Similarity=0.605 Sum_probs=84.5
Q ss_pred cceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeCCH
Q 029305 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCENM 93 (195)
Q Consensus 14 i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~dl 93 (195)
|+|+.|.|+|++++.+||+++||++...+... .....|.....+..++++........ . ....+..|++|.++|+
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~-~~~~~~~~~~~~~~i~l~~~~~~~~~---~-~~~~~~~~~~~~v~d~ 75 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPF-LFPGAWLYAGDGPQLHLIEEDPPDAL---P-EGPGRDDHIAFRVDDL 75 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCC-CCCceEEEeCCCcEEEEEecCCCccc---c-CCCcccceEEEEeCCH
Confidence 68999999999999999999999998765432 12334412222235777655433211 1 3345678999999999
Q ss_pred HHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEE
Q 029305 94 AIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEI 134 (195)
Q Consensus 94 ~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi 134 (195)
+++.++++++|+++...+.. ..+.+.+||.|||||.|||
T Consensus 76 ~~~~~~l~~~g~~~~~~~~~--~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 76 DAFRARLKAAGVPYTESDVP--GDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHcCCCcccccCC--CCCccEEEEECCCCCEEeC
Confidence 99999999999998876643 2345789999999999996
No 20
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.79 E-value=4.7e-18 Score=121.33 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=80.4
Q ss_pred cCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEee-cCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEE
Q 029305 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFN-YGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQ 89 (195)
Q Consensus 11 i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~-~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~ 89 (195)
+.+|+|+.|.|+|+++|.+||+++|||++..+... ...+ +.. .+...+.+.... ....+..|++|.
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~~---~~~~-~~~~~~~~~~~~~l~~---------~~~~~~~hiaf~ 68 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDDQ---GRVY-LKAWDEFDHHSIVLRE---------ADTAGLDFMGFK 68 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecCC---ceEE-EEccCCCcccEEEecc---------CCCCCeeEEEEE
Confidence 57899999999999999999999999998766421 1222 211 111111111110 123467899999
Q ss_pred eC---CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecC
Q 029305 90 CE---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 138 (195)
Q Consensus 90 v~---dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~ 138 (195)
++ +++++.++|+++|+++...+........+.+||.|||||.||++...
T Consensus 69 v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 69 VLDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred eCCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 98 89999999999999987644221111236899999999999998753
No 21
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.78 E-value=5.4e-18 Score=120.95 Aligned_cols=114 Identities=24% Similarity=0.309 Sum_probs=81.8
Q ss_pred cccCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecC-cEEEEeeeCCCCCCCCCCCCCCCCceEEE
Q 029305 9 LCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYG-MGIHLLKSEEPDNLPKAGKNINPKDNHIS 87 (195)
Q Consensus 9 ~~i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g-~~~~ll~~~~~~~~~~~~~~~~~g~~Hia 87 (195)
|.+++|+|+.|.|+|+++|.+||+++|||++..+.+ ...| +...+ ...+.+.... ....++.|++
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~----~~~~-l~~~~~~~~~~~~l~~---------~~~~~~~h~a 67 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG----QSVY-LRAWGDYEHHSLKLTE---------SPEAGLGHIA 67 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC----CeEE-EEeccCCCccEEEEee---------CCCCceEEEE
Confidence 568899999999999999999999999999987654 1233 21112 1122221110 2235789999
Q ss_pred EEeC---CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecC
Q 029305 88 FQCE---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 138 (195)
Q Consensus 88 f~v~---dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~ 138 (195)
|.++ +++++.++|+++|+++...+... + ++..+||+|||||.||++...
T Consensus 68 f~v~~~~~v~~~~~~l~~~G~~~~~~~~~~-~-~~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 68 WRASSPEALERRVAALEASGLGIGWIEGDP-G-HGKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred EEcCCHHHHHHHHHHHHHcCCccccccCCC-C-CcceEEEECCCCCEEEEEEec
Confidence 9998 68899999999999875332111 2 236899999999999999754
No 22
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.78 E-value=5.8e-18 Score=121.65 Aligned_cols=113 Identities=19% Similarity=0.299 Sum_probs=81.1
Q ss_pred cccCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEE
Q 029305 9 LCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISF 88 (195)
Q Consensus 9 ~~i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf 88 (195)
.++.+|+||.|.|+|+++|.+||+++|||++..+.+ ...| +..+...+.+..... . ++..|++|
T Consensus 2 ~~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~----~~~~--l~~~~~~~~i~l~~~--------~--~~~~~iaf 65 (124)
T cd08361 2 IELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA----KATY--FRSDARDHTLVYIEG--------D--PAEQASGF 65 (124)
T ss_pred ceEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC----CeEE--EEcCCccEEEEEEeC--------C--CceEEEEE
Confidence 568899999999999999999999999999876543 2344 322212111111111 1 34578999
Q ss_pred EeCC---HHHHHHHHHhCCCeEeccceecC--CcceEEEEEECCCCCEEEEEec
Q 029305 89 QCEN---MAIVERRLKEMKIDYVKSRVEEG--GINVDQLFFHDPDGSMIEICNC 137 (195)
Q Consensus 89 ~v~d---l~~~~~~l~~~gv~~~~~~~~~~--~~~~~~~~~~DPdGn~iEi~~~ 137 (195)
.|++ ++++.++|+++|+++...+.... ..+.+.+||.|||||.||++..
T Consensus 66 ~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~ 119 (124)
T cd08361 66 ELRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVR 119 (124)
T ss_pred EECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEe
Confidence 9985 99999999999999876543211 1134678999999999999874
No 23
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.78 E-value=3.9e-18 Score=139.16 Aligned_cols=154 Identities=14% Similarity=0.175 Sum_probs=104.5
Q ss_pred cCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecC-cEEEEeeeCCCCCCCCCCCCCCCCceEEEEE
Q 029305 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYG-MGIHLLKSEEPDNLPKAGKNINPKDNHISFQ 89 (195)
Q Consensus 11 i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g-~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~ 89 (195)
+.+|+||.|.|+|+++|++||+++|||+...+.+ .+.+ ++..+ .+..+.....+ ..++.|++|.
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~----~~~~-~~~~~~~~~~~~l~~~~----------~~~~~~~~f~ 65 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGE----NDAL-YLRLDSRAHRIAVHPGE----------SDDLAYAGWE 65 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCC----CceE-EEEcCCCceEEEEEECC----------cCCeeeEeee
Confidence 4689999999999999999999999999876533 2332 22332 22223222211 1357799999
Q ss_pred eCC---HHHHHHHHHhCCCeEeccceec--CCcceEEEEEECCCCCEEEEEecCCCC-CCCCCCcchhhcccccccchhh
Q 029305 90 CEN---MAIVERRLKEMKIDYVKSRVEE--GGINVDQLFFHDPDGSMIEICNCDVLP-VVPLAGDAVRIRSCTSTVNCNF 163 (195)
Q Consensus 90 v~d---l~~~~~~l~~~gv~~~~~~~~~--~~~~~~~~~~~DPdGn~iEi~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~ 163 (195)
|++ ++++.++|++.|+++...+... .....+.++|.|||||.|||+...... ..|+..+ .+. .+
T Consensus 66 V~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~~~~~~~~~~~~--------~~~--~~ 135 (286)
T TIGR03213 66 VADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGAVEDFEKPFVSP--------RAV--SG 135 (286)
T ss_pred eCCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcccccCCCCCCCC--------CCC--Cc
Confidence 997 8999999999999987654211 112347899999999999999864422 1111110 000 00
Q ss_pred hhhhhhhcCCCCCCCcccccccccccccc
Q 029305 164 HQQQIQQEPQINPQSCLSDSIHAKEDFLH 192 (195)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (195)
.+. .+..|.|+.+.++|++.+.+||.
T Consensus 136 -~~~--~~~~l~Hv~l~v~Dle~s~~FY~ 161 (286)
T TIGR03213 136 -FVT--GDQGLGHIVLRVPDVDAALAFYT 161 (286)
T ss_pred -ccc--CCccccEEEEEcCCHHHHHHHHH
Confidence 111 25679999999999999999994
No 24
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.78 E-value=9.1e-18 Score=119.80 Aligned_cols=113 Identities=18% Similarity=0.156 Sum_probs=80.7
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeC
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE 91 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~ 91 (195)
++|+||+|.|+|+++|.+||+++|||++..+... ...| +...+....+..... ...+..|++|.++
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~~---~~~~-~~~~~~~~~~~l~~~----------~~~~~~~~~f~v~ 66 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPED---GALY-LRMDDRAWRIAVHPG----------EADDLAYAGWEVA 66 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCCC---CeEE-EEccCCceEEEEEeC----------CCCceeEEEEEEC
Confidence 4689999999999999999999999998766321 2333 222223333332221 1245789999997
Q ss_pred ---CHHHHHHHHHhCCCeEeccceec--CCcceEEEEEECCCCCEEEEEecC
Q 029305 92 ---NMAIVERRLKEMKIDYVKSRVEE--GGINVDQLFFHDPDGSMIEICNCD 138 (195)
Q Consensus 92 ---dl~~~~~~l~~~gv~~~~~~~~~--~~~~~~~~~~~DPdGn~iEi~~~~ 138 (195)
++++++++|+++|+++...+... ...+.+.+||+|||||.||++...
T Consensus 67 ~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 67 DEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred CHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 58899999999999987644211 111337899999999999999864
No 25
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.77 E-value=1e-17 Score=119.32 Aligned_cols=117 Identities=22% Similarity=0.264 Sum_probs=80.8
Q ss_pred ccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeCC
Q 029305 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCEN 92 (195)
Q Consensus 13 ~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~d 92 (195)
++.++.|.|+|+++|.+||+++|||++....+ ..+ .+..+..+++............ .....+..|++|.|+|
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~-----~~~-~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~~v~d 74 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG-----ENV-TFEGGFALQEGYSWLEGISKAD-IIEKSNNFELYFEEED 74 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC-----ceE-EEeccceeccchhhhccCCccc-ccccCCceEEEEEehh
Confidence 57899999999999999999999999875432 112 3333333322111100000110 1233456899999999
Q ss_pred HHHHHHHHHhCCC-eEeccceecCCcceEEEEEECCCCCEEEEEec
Q 029305 93 MAIVERRLKEMKI-DYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 137 (195)
Q Consensus 93 l~~~~~~l~~~gv-~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~ 137 (195)
+++++++|+++|. ++..++. ...++.+.+||+|||||.|||.+.
T Consensus 75 vd~~~~~l~~~g~~~~~~~~~-~~~~g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 75 FDAFLDKLKRYDNIEYVHPIK-EHPWGQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred hHHHHHHHHhcCCcEEecCcc-cCCCccEEEEEECCCCCEEEEecc
Confidence 9999999999985 6766653 344566899999999999999874
No 26
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.77 E-value=1.3e-17 Score=118.32 Aligned_cols=116 Identities=27% Similarity=0.351 Sum_probs=81.7
Q ss_pred cceEEEEcCCHHHHHHHHHhccCCeEeecCCCC--CCCccEEEeec---CcEEEEeeeCCCCCCCCCCCCCCCCceEEEE
Q 029305 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSF--DFDGACRLFNY---GMGIHLLKSEEPDNLPKAGKNINPKDNHISF 88 (195)
Q Consensus 14 i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~--~~~~~~~~~~~---g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf 88 (195)
++||.|.|+|++++.+||+++|||++..+.... +...+|..... +..+++...... ..+. ....+..|++|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~-~~~~---~~~~~~~~i~~ 76 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGT-EEPY---DNGNGFGHLAF 76 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCC-CCCc---CCCCCeEEEEE
Confidence 579999999999999999999999987653211 11222311111 234544432221 1111 23347889999
Q ss_pred EeCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEE
Q 029305 89 QCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 135 (195)
Q Consensus 89 ~v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~ 135 (195)
.++|+++++++|+++|+++...+...+ +.+.+||.|||||.|||+
T Consensus 77 ~v~did~~~~~l~~~G~~~~~~~~~~~--~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 77 AVDDVYAACERLEEMGVEVTKPPGDGG--MKGIAFIKDPDGYWIELI 121 (121)
T ss_pred EeCCHHHHHHHHHHCCCEEeeCCccCC--CceEEEEECCCCCEEEeC
Confidence 999999999999999999988764432 346889999999999985
No 27
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.77 E-value=1.6e-17 Score=120.87 Aligned_cols=118 Identities=21% Similarity=0.142 Sum_probs=80.8
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeC
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE 91 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~ 91 (195)
++|+||.|.|+|+++|.+||+++|||++..+... ...|.....+...+.+...... ....++.|+||.|+
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~~---~~~~~~~~~~~~~~~i~l~~~~-------~~~~g~~hiaf~v~ 71 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFKG---RGAFLRAAGGGDHHNLFLIKTP-------APMAGFHHAAFEVG 71 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEecC---cEEEEECCCCCCCcEEEEecCC-------CCCCcceEEEEEeC
Confidence 5789999999999999999999999998765431 2344112111222222221110 11367899999999
Q ss_pred CHHHHH---HHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCC
Q 029305 92 NMAIVE---RRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 139 (195)
Q Consensus 92 dl~~~~---~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~ 139 (195)
|++++. ++|.++|+++...+......+...+||.|||||.|||.....
T Consensus 72 d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 122 (134)
T cd08360 72 DIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMD 122 (134)
T ss_pred CHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcccc
Confidence 888776 599999999875442222112367999999999999997544
No 28
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.77 E-value=1.8e-17 Score=118.68 Aligned_cols=112 Identities=25% Similarity=0.377 Sum_probs=81.5
Q ss_pred cCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEEe
Q 029305 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQC 90 (195)
Q Consensus 11 i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v 90 (195)
..+++|+.|.|+|+++|++||+++||++.....+. ..+..+..+..+.+... ....+..|++|.+
T Consensus 2 ~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~~l~~~~~-----------~~~~~~~h~a~~v 66 (123)
T cd08351 2 TVTLNHTIVPARDREASAEFYAEILGLPWAKPFGP----FAVVKLDNGVSLDFAQP-----------DGEIPPQHYAFLV 66 (123)
T ss_pred cceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccCC----EEEEEcCCCcEEEEecC-----------CCCCCcceEEEEe
Confidence 36789999999999999999999999998764321 12212223333433321 1112467999999
Q ss_pred C--CHHHHHHHHHhCCCeEeccceec------CCcceEEEEEECCCCCEEEEEec
Q 029305 91 E--NMAIVERRLKEMKIDYVKSRVEE------GGINVDQLFFHDPDGSMIEICNC 137 (195)
Q Consensus 91 ~--dl~~~~~~l~~~gv~~~~~~~~~------~~~~~~~~~~~DPdGn~iEi~~~ 137 (195)
+ |+++++++|+++|+++...+... ..++.+.+||.|||||.|||++.
T Consensus 67 ~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 67 SEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred CHHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 7 69999999999999986654321 12356899999999999999986
No 29
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.77 E-value=3e-17 Score=117.81 Aligned_cols=119 Identities=25% Similarity=0.389 Sum_probs=87.8
Q ss_pred ccceEEEEcCCHHHHHHHHHhcc---CCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEE
Q 029305 13 SLNHISLVCRSVEASLDFYQNVL---GFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQ 89 (195)
Q Consensus 13 ~i~hv~l~v~dl~~s~~FY~~~L---G~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~ 89 (195)
+|+||.|.|+|++++.+||+++| ||++..+.+. ...|.....+..+.++........ .......+..|+||.
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~---~~~~~~~~~~~~i~l~~~~~~~~~--~~~~~~~g~~hia~~ 75 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED---GRSWRAGDGGTYLVLQQADGESAG--RHDRRNPGLHHLAFR 75 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc---CceEEecCCceEEEEEecccCCCc--ccccCCcCeeEEEEE
Confidence 58999999999999999999999 9998876431 234412224456666655443221 111345678999999
Q ss_pred eC---CHHHHHHHHHhCCCeEeccceec--CCcceEEEEEECCCCCEEEEEe
Q 029305 90 CE---NMAIVERRLKEMKIDYVKSRVEE--GGINVDQLFFHDPDGSMIEICN 136 (195)
Q Consensus 90 v~---dl~~~~~~l~~~gv~~~~~~~~~--~~~~~~~~~~~DPdGn~iEi~~ 136 (195)
|+ ++++++++|+++|+++...+... +..+.+.+||.|||||.|||+.
T Consensus 76 v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 76 APSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred cCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 97 58999999999999998876431 2224589999999999999986
No 30
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.77 E-value=2e-17 Score=116.85 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=80.9
Q ss_pred cCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEEe
Q 029305 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQC 90 (195)
Q Consensus 11 i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v 90 (195)
+++|+|+.|.|+|+++|.+||++ |||++..+.+ ...| +...+...+++.... ...+++.|++|.|
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~----~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~af~v 65 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD----DELY-YRGYGTDPFVYVARK---------GEKARFVGAAFEA 65 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC----CeEE-EecCCCccEEEEccc---------CCcCcccEEEEEE
Confidence 46899999999999999999999 9999876643 2344 322232333332221 1124678999999
Q ss_pred CCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEec
Q 029305 91 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 137 (195)
Q Consensus 91 ~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~ 137 (195)
+|.+++.+.+++.|++....+. ...+.+.+||.|||||.|||+..
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 66 ASRADLEKAAALPGASVIDDLE--APGGGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred CCHHHHHHHHHcCCCeeecCCC--CCCCceEEEEECCCCCEEEEEec
Confidence 9999999999999998765432 12234789999999999999985
No 31
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.77 E-value=6.7e-18 Score=120.92 Aligned_cols=124 Identities=16% Similarity=0.243 Sum_probs=83.4
Q ss_pred ccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeec-CcEEEEeeeCCCCCC-CCCCCCCCCCceEEEEEe
Q 029305 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNY-GMGIHLLKSEEPDNL-PKAGKNINPKDNHISFQC 90 (195)
Q Consensus 13 ~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~-g~~~~ll~~~~~~~~-~~~~~~~~~g~~Hiaf~v 90 (195)
+|+|+.|.|+|++++.+||+++|||+........+....+..+.. +..++|+........ .........+..|+||.|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i~~~v 80 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEPLGEDSPIAKFLEKNGGGIHHIAIEV 80 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEecCCCCChHHHHHhcCCCceEEEEEEc
Confidence 479999999999999999999999998754211111112223333 356777653222111 100002245788999999
Q ss_pred CCHHHHHHHHHhCCCeEeccceecCCcceEEEEE--ECCCCCEEEEEe
Q 029305 91 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFF--HDPDGSMIEICN 136 (195)
Q Consensus 91 ~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~--~DPdGn~iEi~~ 136 (195)
+|++++.++|+++|+++..++...+.++.+.+|+ +||||+.||+.+
T Consensus 81 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 81 DDIEAALETLKEKGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred CCHHHHHHHHHHCCCcccCCCCccCCCCCEEEEecccccCcEEEEecC
Confidence 9999999999999999876422223234456677 799999999974
No 32
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.76 E-value=2.4e-17 Score=123.82 Aligned_cols=119 Identities=24% Similarity=0.308 Sum_probs=77.7
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEE-EeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEEe
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACR-LFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQC 90 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~-~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v 90 (195)
++|+||.|.|+|+++|++||+++|||++.......+ ...+. .+..+...+.+.... ...+++.|+||.|
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~-~~~~~~~l~~~~~~~~i~l~~---------~~~~~~~Hiaf~v 71 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDD-GTTWAAWLHRKGGVHDTALTG---------GNGPRLHHVAFWV 71 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCC-CcEEEEEEecCCCcceEEEec---------CCCCceeEEEEEc
Confidence 578999999999999999999999999865432110 11111 122221222111110 2235789999999
Q ss_pred CC---HHHHHHHHHhCCCeE--eccceecCCcceEEEEEECCCCCEEEEEecCCC
Q 029305 91 EN---MAIVERRLKEMKIDY--VKSRVEEGGINVDQLFFHDPDGSMIEICNCDVL 140 (195)
Q Consensus 91 ~d---l~~~~~~l~~~gv~~--~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~~ 140 (195)
++ ++++.++|+++|+.. ...+...+..+...+||.|||||.||++.....
T Consensus 72 ~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~~~ 126 (161)
T cd07256 72 PEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGDYY 126 (161)
T ss_pred CCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecCce
Confidence 85 777888999999863 222222221234679999999999999986543
No 33
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.76 E-value=4.5e-17 Score=114.62 Aligned_cols=112 Identities=18% Similarity=0.225 Sum_probs=83.6
Q ss_pred cceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecC--cEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeC
Q 029305 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYG--MGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE 91 (195)
Q Consensus 14 i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g--~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~ 91 (195)
+.|+.|.|+|++++++||+++|||++...... ...|..+..+ ....++...... ...++..|++|.++
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~f~v~ 70 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGDG---GGDYAVFSTGGGAVGGLMKAPEPA-------AGSPPGWLVYFAVD 70 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccCC---CCceEEEEeCCccEEEEecCCCCC-------CCCCCeEEEEEEeC
Confidence 47999999999999999999999999766531 1233344444 234444433221 12345779999999
Q ss_pred CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEe
Q 029305 92 NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 136 (195)
Q Consensus 92 dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~ 136 (195)
|+++++++|+++|+++..++.... ++.+.+|+.|||||.|||++
T Consensus 71 di~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 71 DVDAAAARVEAAGGKVLVPPTDIP-GVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred CHHHHHHHHHHCCCEEEeCCcccC-CcEEEEEEECCCCCEEEeEC
Confidence 999999999999999987764333 34589999999999999974
No 34
>PRK06724 hypothetical protein; Provisional
Probab=99.76 E-value=2.7e-17 Score=119.13 Aligned_cols=112 Identities=21% Similarity=0.366 Sum_probs=79.0
Q ss_pred ccCccceEEEEcCCHHHHHHHHHhcc---CCeEeecCCCCCCCccEEEeecC-cEEEEeeeCCCCCCCCCCCCCCCCceE
Q 029305 10 CLKSLNHISLVCRSVEASLDFYQNVL---GFFPIRRPGSFDFDGACRLFNYG-MGIHLLKSEEPDNLPKAGKNINPKDNH 85 (195)
Q Consensus 10 ~i~~i~hv~l~v~dl~~s~~FY~~~L---G~~~~~~~~~~~~~~~~~~~~~g-~~~~ll~~~~~~~~~~~~~~~~~g~~H 85 (195)
+..+|+||.|.|+|+++|.+||+++| |++.... + .+..| ..+.+..... .. ....|..|
T Consensus 4 ~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~---------~-~~~~g~~~l~l~~~~~--~~-----~~~~g~~h 66 (128)
T PRK06724 4 LRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNE---------V-AYSTGESEIYFKEVDE--EI-----VRTLGPRH 66 (128)
T ss_pred cCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeee---------E-eeeCCCeeEEEecCCc--cc-----cCCCCcee
Confidence 35679999999999999999999976 5554321 0 11112 2233322111 11 12357889
Q ss_pred EEEEe---CCHHHHHHHHHhCCCeEeccceecC--CcceEEEEEECCCCCEEEEEecC
Q 029305 86 ISFQC---ENMAIVERRLKEMKIDYVKSRVEEG--GINVDQLFFHDPDGSMIEICNCD 138 (195)
Q Consensus 86 iaf~v---~dl~~~~~~l~~~gv~~~~~~~~~~--~~~~~~~~~~DPdGn~iEi~~~~ 138 (195)
+||.| ++++++.++|+++|+++...+.... +++.+.+||.|||||.||+...+
T Consensus 67 ~af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 67 ICYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred EEEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 99998 4899999999999999876664322 34568999999999999998753
No 35
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.76 E-value=2.4e-17 Score=116.94 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=83.2
Q ss_pred cCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEEe
Q 029305 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQC 90 (195)
Q Consensus 11 i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v 90 (195)
+.+|+|+.|.|+|++++++||+++|||+.....+ +..| +...+...+++.... ...++..|++|.+
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~v 66 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----GIVY-LRATGSEHHILRLRR---------SDRNRLDVVSFSV 66 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----CEEE-EECCCCccEEEEecc---------CCCCCCceEEEEe
Confidence 4689999999999999999999999999876543 2233 222333333433221 1224578999999
Q ss_pred C---CHHHHHHHHHhCCCeEecccee-cCCcceEEEEEECCCCCEEEEEecC
Q 029305 91 E---NMAIVERRLKEMKIDYVKSRVE-EGGINVDQLFFHDPDGSMIEICNCD 138 (195)
Q Consensus 91 ~---dl~~~~~~l~~~gv~~~~~~~~-~~~~~~~~~~~~DPdGn~iEi~~~~ 138 (195)
+ ++++++++|+++|+++...+.. ...++.+.+||.||+||.|||+...
T Consensus 67 ~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 67 ASRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CCHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEecc
Confidence 5 7999999999999998766522 1223457899999999999999864
No 36
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.76 E-value=3.5e-17 Score=123.59 Aligned_cols=124 Identities=18% Similarity=0.225 Sum_probs=83.1
Q ss_pred cccCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCC--CCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEE
Q 029305 9 LCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSF--DFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHI 86 (195)
Q Consensus 9 ~~i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~--~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hi 86 (195)
|.+.+|+|+.|.|+|++++.+||+++|||++..+.... .....| +...+....+....... ....++.|+
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~l~~~~~-------~~~~~~~hi 73 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAW-MSVSNKVHDVAYTRDPA-------GARGRLHHL 73 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEE-EeCCCCceeEEEecCCC-------CCCCCceEE
Confidence 57899999999999999999999999999987542211 011234 21112111121111110 122468999
Q ss_pred EEEeCC---HHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCCC
Q 029305 87 SFQCEN---MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVL 140 (195)
Q Consensus 87 af~v~d---l~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~~ 140 (195)
||.|+| +++++++|+++|+++...+...+......+|+.|||||.|||+.....
T Consensus 74 af~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~~~ 130 (166)
T cd09014 74 AYALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGGGGY 130 (166)
T ss_pred EEECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEcCCc
Confidence 999985 557888999999998655533221133469999999999999997443
No 37
>PRK10291 glyoxalase I; Provisional
Probab=99.76 E-value=2.5e-17 Score=118.90 Aligned_cols=117 Identities=22% Similarity=0.303 Sum_probs=77.6
Q ss_pred EEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecC-----cEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeCC
Q 029305 18 SLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYG-----MGIHLLKSEEPDNLPKAGKNINPKDNHISFQCEN 92 (195)
Q Consensus 18 ~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g-----~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~d 92 (195)
.|.|+|+++|++||+++|||++..+....+....+.++..+ ..+++.... ... .. ..+.+..|+||.|+|
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~-~~-~~g~~~~hlaf~V~d 75 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNW---GVD-KY-ELGTAYGHIALSVDN 75 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecC---CCC-CC-cCCCCeeEEEEEeCC
Confidence 37899999999999999999987654321111111122222 123332111 111 11 234578899999999
Q ss_pred HHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCC
Q 029305 93 MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 139 (195)
Q Consensus 93 l~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~ 139 (195)
+++++++|+++|+++...+.+..+...+.+||.|||||.|||++..+
T Consensus 76 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 76 AAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred HHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccc
Confidence 99999999999999876543222212356889999999999999653
No 38
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.75 E-value=4.4e-17 Score=114.90 Aligned_cols=112 Identities=20% Similarity=0.286 Sum_probs=82.6
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeC
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE 91 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~ 91 (195)
++|+|+.|.|+|++++.+||+++|||++..+.+ ...|.....+....+..... ...+..|++|.|+
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----------~~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA----GSVYLRCSEDDHHSLVLTEG----------DEPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC----CeEEEecCCCCcEEEEEEeC----------CCCCceeEEEEcC
Confidence 468999999999999999999999999987654 23441222122333322221 1245789999998
Q ss_pred ---CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecC
Q 029305 92 ---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 138 (195)
Q Consensus 92 ---dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~ 138 (195)
++++++++|+++|+++...+.... .+.+.+||.||+||.+|++...
T Consensus 67 ~~~~v~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~DP~G~~ie~~~~~ 115 (117)
T cd07240 67 SEEDLEALAAHLEAAGVAPEEASDPEP-GVGRGLRFQDPDGHLLELFVEA 115 (117)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCccCC-CCceEEEEECCCCCEEEEEEcc
Confidence 689999999999999877663222 2458999999999999999763
No 39
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.75 E-value=1.5e-17 Score=123.85 Aligned_cols=121 Identities=18% Similarity=0.149 Sum_probs=79.0
Q ss_pred ccceEEEEcCCHHHHHHHHHhccCCeEeecCCC---CCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEE
Q 029305 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPGS---FDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQ 89 (195)
Q Consensus 13 ~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~---~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~ 89 (195)
+|+||.|.|+|+++|++||+++|||++..+... ......| +..+.+-.++.. ....... ...+++.|+||.
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~---~~~~l~~-~~~~g~~Hiaf~ 74 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAF--LRLDRGEEYVDH---HTLALAQ-GPESGVHHAAFE 74 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEE--EecCCCCCcccc---hHHHHhc-CCCCceeEEEEE
Confidence 479999999999999999999999998754211 0011222 222111000000 0000000 224689999999
Q ss_pred eCCHHHHH---HHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCC
Q 029305 90 CENMAIVE---RRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 139 (195)
Q Consensus 90 v~dl~~~~---~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~ 139 (195)
|+|++++. ++|+++|+++...+..........+|+.|||||.|||+....
T Consensus 75 v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~~ 127 (153)
T cd07257 75 VHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDGD 127 (153)
T ss_pred cCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCce
Confidence 99999986 999999999876542221112246799999999999998654
No 40
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.75 E-value=3.1e-17 Score=119.04 Aligned_cols=115 Identities=23% Similarity=0.401 Sum_probs=82.8
Q ss_pred cceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeC--
Q 029305 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE-- 91 (195)
Q Consensus 14 i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~-- 91 (195)
|+||.|.|+|++++.+||+++|||++..+... ..+ +...+..+.+.... ..+. . ....+..|+||.++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~~----~~~-~~~~~~~l~l~~~~---~~~~-~-~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGEK----TAY-FTIGGTWLALNEEP---DIPR-N-EIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCCc----cce-EeeCceEEEEEccC---CCCc-C-CcCccceEEEEEecHH
Confidence 68999999999999999999999998765331 222 22223444443222 1121 1 23457899999998
Q ss_pred CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCC
Q 029305 92 NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 139 (195)
Q Consensus 92 dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~ 139 (195)
++++++++|++.|+++...+... ..+.+.+||.|||||.|||.....
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~-~~~~~~~~f~DPdG~~iEl~~~~~ 117 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRD-VRDRKSIYFTDPDGHKLEVHTGTL 117 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccc-cCcceEEEEECCCCCEEEEecCcH
Confidence 59999999999999986544322 224589999999999999998654
No 41
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.75 E-value=4.5e-17 Score=114.59 Aligned_cols=117 Identities=16% Similarity=0.174 Sum_probs=82.0
Q ss_pred eEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeec-Cc-EEEEeeeCCCCCCCCCCCCCCCCceEEEEEeCCH
Q 029305 16 HISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNY-GM-GIHLLKSEEPDNLPKAGKNINPKDNHISFQCENM 93 (195)
Q Consensus 16 hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~-g~-~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~dl 93 (195)
||.|.|.|++++.+||+++|||++..+.... ....|..+.. +. ...+............. ....+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMG-GGFRWVTVAPPGSPETSLVLAPPANPAAMSG-LQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccC-CCcEEEEEeCCCCCeeEEEEeCCCCcccccc-ccCCCceEEEEEehHH
Confidence 8999999999999999999999998765311 1223423332 22 33332222221111111 3456788999999999
Q ss_pred HHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEe
Q 029305 94 AIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 136 (195)
Q Consensus 94 ~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~ 136 (195)
++++++|+++|+++...+... .+.+.+|+.|||||.|||++
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREM--PYGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccC--CCceEEEEECCCCCEEEEeC
Confidence 999999999999998776322 23489999999999999974
No 42
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.75 E-value=3e-17 Score=120.79 Aligned_cols=112 Identities=17% Similarity=0.121 Sum_probs=80.5
Q ss_pred ceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecC-cEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeCC-
Q 029305 15 NHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYG-MGIHLLKSEEPDNLPKAGKNINPKDNHISFQCEN- 92 (195)
Q Consensus 15 ~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g-~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~d- 92 (195)
+||.|.|+|++++.+||+++|||++..+.+. ..+| +...+ ...+.+.... ....+++|+||.|+|
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~---~~~~-l~~~~~~~~h~~~~~~---------~~~~gl~Hiaf~v~~~ 67 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED---RIVF-MRCHPNPFHHTFAVGP---------ASSSHFHHVNFMVTDI 67 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC---EEEE-EEcCCCCCcceeeecc---------CCCCceEEEEEECCCH
Confidence 5999999999999999999999998776431 2233 22222 2223332110 234689999999985
Q ss_pred --HHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCC
Q 029305 93 --MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 139 (195)
Q Consensus 93 --l~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~ 139 (195)
++++.++|+++|+++...+......+.+.+||+||||+.||++....
T Consensus 68 ~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~ 116 (141)
T cd07258 68 DDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGME 116 (141)
T ss_pred HHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcc
Confidence 55779999999999876654333234578999999999999998654
No 43
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.74 E-value=6.6e-17 Score=115.11 Aligned_cols=117 Identities=21% Similarity=0.379 Sum_probs=82.7
Q ss_pred ccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCC-CccEEEee-----cCcEEEEeeeCCCCCCCCCCCCCCCCceEE
Q 029305 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDF-DGACRLFN-----YGMGIHLLKSEEPDNLPKAGKNINPKDNHI 86 (195)
Q Consensus 13 ~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~-~~~~~~~~-----~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hi 86 (195)
+|+||.|.|.|++++.+||+++|||+...+....+. ...+..+. .+..+.++....... + .. ....++.|+
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~-~~-~~~~~~~hi 77 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGP-K-GR-RGPGQIHHI 77 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCC-C-CC-CCCCcEEEE
Confidence 478999999999999999999999998776432211 11221232 234566665433211 1 11 334568999
Q ss_pred EEEeC---CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEE
Q 029305 87 SFQCE---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 135 (195)
Q Consensus 87 af~v~---dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~ 135 (195)
||.++ ++++++++++++|+++...+.. .+.+.+||+|||||.|||+
T Consensus 78 ~f~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 78 AFSVPSEASLDAWRERLRAAGVPVSGVVDH---FGERSIYFEDPDGLRLELT 126 (126)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCcccceEee---cceEEEEEECCCCCEEEeC
Confidence 99999 5799999999999998764432 2458999999999999984
No 44
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.74 E-value=4.8e-17 Score=115.74 Aligned_cols=113 Identities=22% Similarity=0.242 Sum_probs=80.4
Q ss_pred ccCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeec--CcEEEEeeeCCCCCCCCCCCCCCCCceEEE
Q 029305 10 CLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNY--GMGIHLLKSEEPDNLPKAGKNINPKDNHIS 87 (195)
Q Consensus 10 ~i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~--g~~~~ll~~~~~~~~~~~~~~~~~g~~Hia 87 (195)
++++|+|+.|.|+|++++.+||+++||+++..+.+ ...| +... +....+.... ....+..|++
T Consensus 1 ~~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~hi~ 65 (121)
T cd07266 1 NILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----DRIY-LRGLEEFIHHSLVLTK----------APVAGLGHIA 65 (121)
T ss_pred CcceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----CeEE-EEecCCCceEEEEEee----------CCCCceeEEE
Confidence 36789999999999999999999999999876543 1232 2111 1122222111 1224688999
Q ss_pred EEeC---CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEec
Q 029305 88 FQCE---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 137 (195)
Q Consensus 88 f~v~---dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~ 137 (195)
|.|. ++++++++|+++|+++...+........+.+|+.|||||.||++..
T Consensus 66 ~~v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 66 FRVRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred EECCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 9995 7999999999999998764322211123789999999999999974
No 45
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.74 E-value=1.7e-17 Score=135.70 Aligned_cols=150 Identities=14% Similarity=0.119 Sum_probs=103.6
Q ss_pred ccCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecC--cEEEEeeeCCCCCCCCCCCCCCCCceEEE
Q 029305 10 CLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYG--MGIHLLKSEEPDNLPKAGKNINPKDNHIS 87 (195)
Q Consensus 10 ~i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g--~~~~ll~~~~~~~~~~~~~~~~~g~~Hia 87 (195)
+|.+|+||.|.|+|++++++||+++|||++..+.+ ...| +...+ ....+.... ....++.|++
T Consensus 1 ~i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~----~~~~-~~~~~~~~~~~l~l~~----------~~~~~~~hia 65 (294)
T TIGR02295 1 NILRTGHVELRVTDLDKSREFYVDLLGFRETESDK----EYIY-LRGIEEFQHHSLVLTK----------APSAALSYIG 65 (294)
T ss_pred CCceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC----CeEE-EeccCcCCceEEEeee----------CCCcCccEEE
Confidence 36889999999999999999999999999876643 1233 22111 111121111 1234688999
Q ss_pred EEeC---CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCCCCCCCCCCcchhhcccccccchhhh
Q 029305 88 FQCE---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVVPLAGDAVRIRSCTSTVNCNFH 164 (195)
Q Consensus 88 f~v~---dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 164 (195)
|.|+ +++++.++|+++|+++...+.. .+.+.+||.|||||.|||+...... ... . .+.+..
T Consensus 66 f~v~~~~dl~~~~~~l~~~Gv~v~~~~~~---~~~~~~~~~DPdG~~iEl~~~~~~~-~~~---------~-~~~~~~-- 129 (294)
T TIGR02295 66 FRVSKEEDLDKAADFFQKLGHPVRLVRDG---GQPEALRVEDPFGYPIEFYFEMEKV-ERL---------L-RRYHRH-- 129 (294)
T ss_pred EEeCCHHHHHHHHHHHHhcCCcEEeecCC---CCceEEEEECCCCCEEEEEEchhhc-ccc---------c-cccccc--
Confidence 9998 7899999999999998765422 2348999999999999999854321 000 0 011000
Q ss_pred hhhhhhcCCCCCCCcccccccccccccc
Q 029305 165 QQQIQQEPQINPQSCLSDSIHAKEDFLH 192 (195)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (195)
....+-.|.|+++.++|++.+.+||.
T Consensus 130 --~~~~~~~i~Hv~l~v~dl~~a~~Fy~ 155 (294)
T TIGR02295 130 --RGVSPVRLDHFNVFVPDVQRALRFYK 155 (294)
T ss_pred --CCccceeeeeEEEEeCCHHHHHHHHH
Confidence 01135579999999999999999994
No 46
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.74 E-value=1.5e-16 Score=115.26 Aligned_cols=121 Identities=27% Similarity=0.379 Sum_probs=85.2
Q ss_pred ccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecC----cEEEEeeeCCCCCCCCCCCCCCCCceEEEE
Q 029305 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYG----MGIHLLKSEEPDNLPKAGKNINPKDNHISF 88 (195)
Q Consensus 13 ~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g----~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf 88 (195)
+|+||.|.|+|++++.+||+++|||++..+.+. ..+..+..+ ..+.+........ . ....+..|++|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~~~~~~l~l~~~~~~~~----~-~~~~~~~h~~f 71 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL----GGLVFLSRDPDEHHQIALITGRPAAP----P-PGPAGLNHIAF 71 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC----CcEEEEEecCCCceEEEEEecCCCCC----C-CCCCCceEEEE
Confidence 479999999999999999999999998766431 122233322 2344443332211 1 33457889999
Q ss_pred EeCCHH---HHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCCCCCCCC
Q 029305 89 QCENMA---IVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVVPL 145 (195)
Q Consensus 89 ~v~dl~---~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~~~~~p~ 145 (195)
.|++++ +++++|.+.|+++..... .+ +.+.+|+.|||||.|||+...+...|-.
T Consensus 72 ~v~~~~~v~~~~~~l~~~G~~~~~~~~--~~-~~~~~~~~DP~G~~ie~~~~~~~~~~~~ 128 (134)
T cd08348 72 EVDSLDDLRDLYERLRAAGITPVWPVD--HG-NAWSIYFRDPDGNRLELFVDTPWYVAQA 128 (134)
T ss_pred EeCCHHHHHHHHHHHHHCCCCccccCC--CC-ceeEEEEECCCCCEEEEEEcCCCChhhH
Confidence 999655 578999999999876542 22 2478999999999999998766555533
No 47
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.74 E-value=5.5e-17 Score=120.98 Aligned_cols=120 Identities=17% Similarity=0.184 Sum_probs=80.3
Q ss_pred cCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCC-C--CCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEE
Q 029305 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSF-D--FDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHIS 87 (195)
Q Consensus 11 i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~-~--~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hia 87 (195)
.++|+||.|.|+|++++.+||+++|||++..+.... + ......++..+...+.+.... . ....++.|+|
T Consensus 7 ~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~-------~-~~~~g~~Hia 78 (154)
T cd07237 7 DQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAE-------G-PGPKRIHHLM 78 (154)
T ss_pred CCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEc-------C-CCCceeEEEE
Confidence 467999999999999999999999999986542210 0 011111222221111111110 0 2235789999
Q ss_pred EEeCCHH---HHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecC
Q 029305 88 FQCENMA---IVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 138 (195)
Q Consensus 88 f~v~dl~---~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~ 138 (195)
|.|+|++ ++.++|+++|+++...+......+.+.+|+.|||||.|||+...
T Consensus 79 f~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~ 132 (154)
T cd07237 79 LEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGG 132 (154)
T ss_pred EEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCc
Confidence 9998654 68999999999998665332222457899999999999998753
No 48
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.73 E-value=9.7e-17 Score=112.63 Aligned_cols=109 Identities=26% Similarity=0.442 Sum_probs=77.6
Q ss_pred eEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeC--CH
Q 029305 16 HISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE--NM 93 (195)
Q Consensus 16 hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~--dl 93 (195)
||.|.|+|++++.+||+++|||+...+.+ ...+ +...+..+.+.... ... ....+..|++|.|+ ++
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~----~~~~-~~~~~~~l~~~~~~---~~~----~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS----KEAY-FELAGLWICLMEED---SLQ----GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC----ceeE-EEecCeEEEeccCC---CcC----CCCCCccEEEEEcCHHHH
Confidence 79999999999999999999999877654 1232 22223333322211 111 12346789999996 79
Q ss_pred HHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEec
Q 029305 94 AIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 137 (195)
Q Consensus 94 ~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~ 137 (195)
++++++|+++|+++........ .+.+.+|+.|||||.|||+..
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQ-GEGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCccccC-CCceEEEEECCCCCEEEEEeC
Confidence 9999999999999875432222 234899999999999999964
No 49
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.73 E-value=3e-16 Score=111.96 Aligned_cols=117 Identities=20% Similarity=0.284 Sum_probs=80.7
Q ss_pred cceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecC-cEEEEeeeCCCC-----C-CCCCCCCCCCCceEE
Q 029305 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYG-MGIHLLKSEEPD-----N-LPKAGKNINPKDNHI 86 (195)
Q Consensus 14 i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g-~~~~ll~~~~~~-----~-~~~~~~~~~~g~~Hi 86 (195)
+.|+.|.|+|++++.+||+++|||+.....+. ..|..+..+ ..+.+....... . .+... ...++..|+
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 75 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHES----GDYGELETGETTLAFASHDLAESNLKGGFVKADP-AQPPAGFEI 75 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecCC----CcEEEecCCcEEEEEEcccccccccccCccCCcc-ccCCCcEEE
Confidence 46999999999999999999999998754331 123233333 223332221100 0 01111 233455799
Q ss_pred EEEeCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEe
Q 029305 87 SFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 136 (195)
Q Consensus 87 af~v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~ 136 (195)
+|.|+|+++++++++++|+++..++.. ..++.+.++++|||||.|||++
T Consensus 76 ~~~v~di~~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DPdG~~~~~~~ 124 (125)
T cd07264 76 AFVTDDVAAAFARAVEAGAVLVSEPKE-KPWGQTVAYVRDINGFLIELCS 124 (125)
T ss_pred EEEcCCHHHHHHHHHHcCCEeccCCcc-CCCCcEEEEEECCCCCEEEEec
Confidence 999999999999999999998776633 3345578999999999999986
No 50
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.73 E-value=1e-16 Score=114.42 Aligned_cols=109 Identities=26% Similarity=0.409 Sum_probs=79.0
Q ss_pred ccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeC-
Q 029305 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE- 91 (195)
Q Consensus 13 ~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~- 91 (195)
+|+||.|.|+|++++.+||+++|||++....+ ...| +...+..+.+. .... . ...++..|++|.++
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~----~~~~-~~~~~~~~~l~-~~~~--~-----~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD----KGAY-LEAGDLWLCLS-VDAN--V-----GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC----CceE-EecCCEEEEEe-cCCC--C-----CCCCCeeeEEEEeCH
Confidence 57999999999999999999999999876544 1233 22222222222 1111 1 12346789999995
Q ss_pred -CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecC
Q 029305 92 -NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 138 (195)
Q Consensus 92 -dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~ 138 (195)
++++++++|+++|+++...+.. . .+.+||.|||||.|||+...
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~-~---~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS-E---GDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC-C---ccEEEEECCCCCEEEEEeCC
Confidence 8999999999999998665422 2 26899999999999999753
No 51
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.72 E-value=1.6e-16 Score=117.30 Aligned_cols=114 Identities=24% Similarity=0.339 Sum_probs=79.6
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeC
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE 91 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~ 91 (195)
.+|+||.|.|+|++++.+||+++|||++..+.+. ...| +..+...+.+.... ...+++.|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~---~~~~--l~~~~~~~~~~l~~---------~~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLGD---QMAF--LRCNSDHHSIAIAR---------GPHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeCC---eEEE--EECCCCcceEEEcc---------CCCCceEEEEEECC
Confidence 4789999999999999999999999998755321 1233 33231111111111 12356889999999
Q ss_pred CHHHHH---HHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCC
Q 029305 92 NMAIVE---RRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 139 (195)
Q Consensus 92 dl~~~~---~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~ 139 (195)
+++++. ++|+++|+++...+...+......+||.|||||.|||++...
T Consensus 69 d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 69 SIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred CHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 877775 899999999876543322222356899999999999998643
No 52
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.72 E-value=1.7e-16 Score=113.09 Aligned_cols=115 Identities=20% Similarity=0.310 Sum_probs=76.1
Q ss_pred eEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEee-cCcEEEEeeeCCCCC--CCCCCCCCCCCceEEEE--Ee
Q 029305 16 HISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFN-YGMGIHLLKSEEPDN--LPKAGKNINPKDNHISF--QC 90 (195)
Q Consensus 16 hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~-~g~~~~ll~~~~~~~--~~~~~~~~~~g~~Hiaf--~v 90 (195)
||.|.|+|+++|++||+++|||++..... .|..+. .+..+.+........ ..........+..|++| .+
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 75 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE------TWVDFDFFGHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLILSE 75 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC------CcccccccCcEEEEEeccCCCcccccCCCCCCccCCceEEEEEeH
Confidence 89999999999999999999999876532 121222 233333322221101 01110122334678765 55
Q ss_pred CCHHHHHHHHHhCCCeEeccceec-C--CcceEEEEEECCCCCEEEEEe
Q 029305 91 ENMAIVERRLKEMKIDYVKSRVEE-G--GINVDQLFFHDPDGSMIEICN 136 (195)
Q Consensus 91 ~dl~~~~~~l~~~gv~~~~~~~~~-~--~~~~~~~~~~DPdGn~iEi~~ 136 (195)
+|+++++++|+++|+++...+... . ..+.+.+||.|||||.|||..
T Consensus 76 ~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 76 EEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred HHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 699999999999999998765322 1 123588999999999999976
No 53
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.72 E-value=9.6e-17 Score=114.67 Aligned_cols=122 Identities=20% Similarity=0.359 Sum_probs=84.3
Q ss_pred cceEEEEcCCHHHHHHHHHhccCCeEeecCCCC-CCCccEEEee-cCcEEEEeeeCCCCCCCCC-CCCCCCCceEEEEEe
Q 029305 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSF-DFDGACRLFN-YGMGIHLLKSEEPDNLPKA-GKNINPKDNHISFQC 90 (195)
Q Consensus 14 i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~-~~~~~~~~~~-~g~~~~ll~~~~~~~~~~~-~~~~~~g~~Hiaf~v 90 (195)
|+||.|.|+|++++.+||+++|||+........ +....+..+. .+..+.+++.......... ......+..|++|.|
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~~f~v 80 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLGNVQIELIEPLDDDSPIAKFLEKRGEGLHHIAFEV 80 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcCCEEEEEEEECCCCCcHHHHHhcCCCceEEEEEEe
Confidence 579999999999999999999999998764421 1111122333 3456777765433221110 013457899999999
Q ss_pred CCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCC---CCEEEEEe
Q 029305 91 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPD---GSMIEICN 136 (195)
Q Consensus 91 ~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPd---Gn~iEi~~ 136 (195)
+|+++++++|+++|+++...+..... +++.+++.||+ |+.|||++
T Consensus 81 ~d~~~~~~~l~~~G~~~~~~~~~~~~-~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 81 DDIDAALARLKAQGVRLLQEGPRIGA-GGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred CCHHHHHHHHHHCCCeeeccCCCccC-CCCEEEEEecCCCceEEEEecC
Confidence 99999999999999999887642222 23455555555 99999975
No 54
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.72 E-value=4.8e-17 Score=115.74 Aligned_cols=122 Identities=23% Similarity=0.341 Sum_probs=82.0
Q ss_pred ccceEEEEcCCHHHHHHHHHhccCCeEeecCCC-CCCCcc-EEEee-cCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEE
Q 029305 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPGS-FDFDGA-CRLFN-YGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQ 89 (195)
Q Consensus 13 ~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~-~~~~~~-~~~~~-~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~ 89 (195)
+|+||+|.|+|++++.+||+++|||++...... ...... ...+. .+..+.+.....+............+..|+++.
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFLNPSPPPRASGHSFPEHGGHHIAFL 80 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEEEESSSSSSEEEHHHSHTSEEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccceeeeeeccccccccccccccccceeEEEE
Confidence 589999999999999999999999999887541 100111 11223 334566655543322211000000145677777
Q ss_pred eC---CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEE
Q 029305 90 CE---NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEI 134 (195)
Q Consensus 90 v~---dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi 134 (195)
+. |+++++++|++.|+++...+..........+|++|||||.|||
T Consensus 81 ~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 81 AFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp ESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred eccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 76 7888999999999999988755444344567899999999997
No 55
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.72 E-value=2.6e-16 Score=112.08 Aligned_cols=118 Identities=19% Similarity=0.266 Sum_probs=77.5
Q ss_pred cceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCC-CCCCCCCCCCceEEEEEeC-
Q 029305 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNL-PKAGKNINPKDNHISFQCE- 91 (195)
Q Consensus 14 i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~-~~~~~~~~~g~~Hiaf~v~- 91 (195)
++||+|.|+|+++|++||+. |||++....+.. .........+..+.+......... +... ...++..|++|.+.
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~~--~~~~~~~~~~~~l~l~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 76 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADDE--PHVEAVLPGGVRLAWDTVESIRSFTPGWT-PTGGHRIALAFLCET 76 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCCC--CcEEEEeCCCEEEEEEcccceeeecCCCC-CCCCCcEEEEEEcCC
Confidence 57999999999999999975 999986544311 112101222333333222111000 1111 22345678999876
Q ss_pred --CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEe
Q 029305 92 --NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 136 (195)
Q Consensus 92 --dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~ 136 (195)
|+++++++|+++|+++..++. ...++.+.++|+|||||.|||+.
T Consensus 77 ~~dvd~~~~~l~~~G~~~~~~~~-~~~~g~~~~~~~DPdG~~iel~~ 122 (122)
T cd07235 77 PAEVDALYAELVGAGYPGHKEPW-DAPWGQRYAIVKDPDGNLVDLFA 122 (122)
T ss_pred HHHHHHHHHHHHHCCCCcCCCCc-cCCCCCEEEEEECCCCCEEEEeC
Confidence 899999999999999877653 33445678999999999999974
No 56
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.71 E-value=3.8e-16 Score=110.69 Aligned_cols=113 Identities=16% Similarity=0.265 Sum_probs=79.3
Q ss_pred eEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecC---cEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeCC
Q 029305 16 HISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYG---MGIHLLKSEEPDNLPKAGKNINPKDNHISFQCEN 92 (195)
Q Consensus 16 hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g---~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~d 92 (195)
+..|.|+|+++|.+||+++|||++....+ .+..+..+ ..+.+...... ..+.......+...|++|.|+|
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~l~l~~~~~~-~~~~~~~~~~~~~~~~~~~v~d 76 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD------WYVSLRSPDGGVELAFMLPGHE-TVPAAQYQFQGQGLILNFEVDD 76 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC------cEEEEecCCCceEEEEccCCCC-CCcchhcccCCceEEEEEEECC
Confidence 67899999999999999999999986533 12233322 23334332221 1110111223334599999999
Q ss_pred HHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEe
Q 029305 93 MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 136 (195)
Q Consensus 93 l~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~ 136 (195)
+++++++|.++|+++..++.. ..++.+.++++|||||.|||++
T Consensus 77 id~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 77 VDAEYERLKAEGLPIVLPLRD-EPWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred HHHHHHHHHhcCCCeeecccc-CCCcceEEEEECCCCCEEEEEC
Confidence 999999999999998766533 3445689999999999999985
No 57
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.71 E-value=6.1e-16 Score=109.78 Aligned_cols=116 Identities=20% Similarity=0.282 Sum_probs=81.5
Q ss_pred cceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecC--cEEEEeeeCCCCCCCC-CCCCCCCCceEEEEEe
Q 029305 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYG--MGIHLLKSEEPDNLPK-AGKNINPKDNHISFQC 90 (195)
Q Consensus 14 i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g--~~~~ll~~~~~~~~~~-~~~~~~~g~~Hiaf~v 90 (195)
|.+|.|.|+|++++++||+++|||++..+.+ ..+..+..+ ..+.++.......... .......+..|++|.+
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~-----~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 75 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKED-----RRLAFFWVGGRGMLLLFDPGATSTPGGEIPPHGGSGPGHFAFAI 75 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecCC-----CceEEEEcCCCcEEEEEecCCcccccCCCCCCCCCCccEEEEEc
Confidence 4689999999999999999999999987522 112223333 3344444332210000 0012345788999999
Q ss_pred C--CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEe
Q 029305 91 E--NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 136 (195)
Q Consensus 91 ~--dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~ 136 (195)
+ +++++++++.++|+++...+. ...+.+.+||.|||||.|||++
T Consensus 76 ~~~dl~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~DP~G~~ie~~~ 121 (122)
T cd08354 76 PAEELAEWEAHLEAKGVAIESEVQ--WPRGGRSLYFRDPDGNLLELAT 121 (122)
T ss_pred CHHHHHHHHHHHHhcCCceecccc--CCCCeeEEEEECCCCCEEEEec
Confidence 5 899999999999999876553 2334588999999999999986
No 58
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.70 E-value=1.1e-15 Score=109.00 Aligned_cols=118 Identities=12% Similarity=0.166 Sum_probs=80.5
Q ss_pred EEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecC-cEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeCCHHH
Q 029305 17 ISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYG-MGIHLLKSEEPDNLPKAGKNINPKDNHISFQCENMAI 95 (195)
Q Consensus 17 v~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g-~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~dl~~ 95 (195)
-.|.|+|++++.+||+++||+++..+....+....+..+..+ ..+.+........... ......+..|++|.|+|+++
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~v~d~d~ 81 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGDGGVMVGSVRDDYRASS-ARAGGAGTQGVYVVVDDVDA 81 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECCEEEEEecCCCcccccc-cccCCCceEEEEEEECCHHH
Confidence 468899999999999999999998764211111112223333 3344433322211111 11334567899999999999
Q ss_pred HHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEe
Q 029305 96 VERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 136 (195)
Q Consensus 96 ~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~ 136 (195)
++++|+++|+++..++... .++.+.++++|||||.|+|.+
T Consensus 82 ~~~~l~~~G~~v~~~~~~~-~~g~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 82 HYERARAAGAEILREPTDT-PYGSREFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHCCCEEeeCcccc-CCCcEEEEEECCCCCEEEEec
Confidence 9999999999998776433 345688999999999999975
No 59
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.69 E-value=9.5e-16 Score=107.91 Aligned_cols=110 Identities=17% Similarity=0.312 Sum_probs=78.9
Q ss_pred EEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeCC---H
Q 029305 17 ISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCEN---M 93 (195)
Q Consensus 17 v~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~d---l 93 (195)
+.|.|+|++++++||+++||+++....+. ..+.....+..+.++...... + .. ....+..|++|.+++ +
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~--~-~~-~~~~~~~~~~~~v~~~~~~ 73 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSPT----FALFVLGSGVKLGLWSRHTVE--P-AS-DATGGGSELAFMVDDGAAV 73 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCCc----eEEEEeCCCcEEEEeeccccC--C-CC-CCCCCceEEEEEcCCHHHH
Confidence 67999999999999999999998765331 111012234556665443221 1 11 335678899999985 8
Q ss_pred HHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEe
Q 029305 94 AIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 136 (195)
Q Consensus 94 ~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~ 136 (195)
+++++++.++|+++...+... +++ +.++|.|||||.|||+.
T Consensus 74 ~~~~~~~~~~g~~v~~~~~~~-~~g-~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 74 DALYAEWQAKGVKIIQEPTEM-DFG-YTFVALDPDGHRLRVFA 114 (114)
T ss_pred HHHHHHHHHCCCeEecCcccc-CCc-cEEEEECCCCCEEEeeC
Confidence 899999999999998776433 333 68899999999999973
No 60
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.69 E-value=6.7e-16 Score=110.52 Aligned_cols=117 Identities=18% Similarity=0.200 Sum_probs=78.0
Q ss_pred ceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCC--CCCCCCceEEEEEeC-
Q 029305 15 NHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAG--KNINPKDNHISFQCE- 91 (195)
Q Consensus 15 ~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~--~~~~~g~~Hiaf~v~- 91 (195)
..|.|.|+|+++|++||++ |||+...+.... ...+.....+..+.+............. .....+..|++|.|+
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~--~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f~v~~ 78 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSDE--KAACMVISDNIFVMLLTEDFFQTFTPKPIADTKKSTEVLISLSADS 78 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCCC--CeEEEEECCceEEEEEcHHHHhhccCCCcccCCCCCeEEEEEeCCC
Confidence 4789999999999999987 999987543321 2233122223455554432110000000 012345679999998
Q ss_pred --CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEe
Q 029305 92 --NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 136 (195)
Q Consensus 92 --dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~ 136 (195)
++++++++++++|+++..++.... +.+.+||+|||||.|||+.
T Consensus 79 ~~~vd~~~~~l~~~G~~i~~~p~~~~--~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 79 REEVDELVEKALAAGGKEFREPQDHG--FMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred HHHHHHHHHHHHHCCCcccCCcccCC--ceEEEEEECCCCCEEEEEE
Confidence 588999999999999987664333 2468899999999999985
No 61
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.69 E-value=1.2e-15 Score=108.89 Aligned_cols=111 Identities=19% Similarity=0.275 Sum_probs=77.8
Q ss_pred cceEEEEcCCHHHHHHHHHhc---cCCeEeecCCCCCCCccEEEeec---CcEEEEeeeCCCCCCCCCCCCCCCCceEEE
Q 029305 14 LNHISLVCRSVEASLDFYQNV---LGFFPIRRPGSFDFDGACRLFNY---GMGIHLLKSEEPDNLPKAGKNINPKDNHIS 87 (195)
Q Consensus 14 i~hv~l~v~dl~~s~~FY~~~---LG~~~~~~~~~~~~~~~~~~~~~---g~~~~ll~~~~~~~~~~~~~~~~~g~~Hia 87 (195)
|+||.|.|+|+++|++||+++ ||++...+.. + .+..+.. +..+.+...... .+ ....+..|++
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~----~-~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~~~~hi~ 69 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG----P-GAVGYGKGGGGPDFWVTKPFDG--EP----ATAGNGTHVA 69 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC----C-ceeEeccCCCCceEEEeccccC--CC----CCCCCceEEE
Confidence 589999999999999999998 6999876541 1 1212332 234554432211 11 1223457999
Q ss_pred EEeCC---HHHHHHHHHhCCCeEeccceecC--CcceEEEEEECCCCCEEEEE
Q 029305 88 FQCEN---MAIVERRLKEMKIDYVKSRVEEG--GINVDQLFFHDPDGSMIEIC 135 (195)
Q Consensus 88 f~v~d---l~~~~~~l~~~gv~~~~~~~~~~--~~~~~~~~~~DPdGn~iEi~ 135 (195)
|.|++ ++++++++.+.|+.+...+.... +.+.+.+||.|||||.|||+
T Consensus 70 f~v~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 70 FAAPSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred EECCCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 99996 78899999999999877653322 23446899999999999997
No 62
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.69 E-value=1.4e-15 Score=108.02 Aligned_cols=111 Identities=22% Similarity=0.327 Sum_probs=78.6
Q ss_pred ceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeCC--
Q 029305 15 NHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCEN-- 92 (195)
Q Consensus 15 ~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~d-- 92 (195)
.|+.|.|+|++++.+||+++||++...+.+. ...| .. .+..+.+.....+. ...++..|++|.+++
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~---~~~~-~~-~~~~~~~~~~~~~~-------~~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRDD---YAKF-LL-EDPRLNFVLNERPG-------APGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccCC---eeEE-Ee-cCCceEEEEecCCC-------CCCCCeeEEEEEeCCHH
Confidence 3999999999999999999999998765431 1233 22 22334433222111 111578899999986
Q ss_pred -HHHHHHHHHhCCCeEeccceecC-CcceEEEEEECCCCCEEEEEec
Q 029305 93 -MAIVERRLKEMKIDYVKSRVEEG-GINVDQLFFHDPDGSMIEICNC 137 (195)
Q Consensus 93 -l~~~~~~l~~~gv~~~~~~~~~~-~~~~~~~~~~DPdGn~iEi~~~ 137 (195)
+++++++|.++|+++...+.... +...+.+|++|||||.|||+..
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 117 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVT 117 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEe
Confidence 88899999999999877652221 1124689999999999999974
No 63
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.69 E-value=2.1e-15 Score=106.92 Aligned_cols=116 Identities=16% Similarity=0.060 Sum_probs=80.7
Q ss_pred EEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecC-cEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeCCHHH
Q 029305 17 ISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYG-MGIHLLKSEEPDNLPKAGKNINPKDNHISFQCENMAI 95 (195)
Q Consensus 17 v~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g-~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~dl~~ 95 (195)
+.|.|+|++++.+||+++||+++..+....+....+..+..+ ..+.+...... .. .. .....+..|++|.|+|+++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~-~~-~~~~~~~~~~~~~v~d~~~ 81 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDSVLMLADEFPE-HG-SP-ASWGGTPVSLHLYVEDVDA 81 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCEEEEEecCCcc-cC-CC-CCCCCceEEEEEEeCCHHH
Confidence 568899999999999999999998764311111123233333 33444322211 11 11 1234567899999999999
Q ss_pred HHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEe
Q 029305 96 VERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 136 (195)
Q Consensus 96 ~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~ 136 (195)
+++++.+.|+++..++.. ..++.+.+++.|||||.|||++
T Consensus 82 ~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 82 TFARAVAAGATSVMPPAD-QFWGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHHCCCeEecCccc-ccccceEEEEECCCCCEEEEec
Confidence 999999999998877642 3456689999999999999986
No 64
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.69 E-value=1e-15 Score=106.47 Aligned_cols=103 Identities=29% Similarity=0.507 Sum_probs=75.5
Q ss_pred EEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcE-----EEEeeeCCCCCCCCCCCCCCCCceEEEEEeCCH
Q 029305 19 LVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMG-----IHLLKSEEPDNLPKAGKNINPKDNHISFQCENM 93 (195)
Q Consensus 19 l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~-----~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~dl 93 (195)
|.|+|++++++||+++|||++....+. . ..+..+.. ..+...... .....+..|++|.|+|+
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~dv 67 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDPD-----Y-VDFSLGFRFHDGVIEFLQFPDP-------PGPPGGGFHLCFEVEDV 67 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEETS-----E-EEEEETEEEEEEEEEEEEEESS-------SSSSSSEEEEEEEESHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCCC-----e-EEEEeccchhhhhHHHccCCcc-------ccCCCceeEEEEEEcCH
Confidence 689999999999999999999985431 1 13333322 233333211 13456789999999999
Q ss_pred HHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEE
Q 029305 94 AIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 135 (195)
Q Consensus 94 ~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~ 135 (195)
++++++++++|+++...+... .++.+.+++.|||||.|||+
T Consensus 68 ~~~~~~l~~~G~~~~~~~~~~-~~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 68 DALYERLKELGAEIVTEPRDD-PWGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHHHHHHTTSEEEEEEEEE-TTSEEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHCCCeEeeCCEEc-CCCeEEEEEECCCCCEEEeC
Confidence 999999999999988776543 33568999999999999996
No 65
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.69 E-value=8.9e-16 Score=108.09 Aligned_cols=107 Identities=21% Similarity=0.349 Sum_probs=73.0
Q ss_pred ccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEE--Ee
Q 029305 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISF--QC 90 (195)
Q Consensus 13 ~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf--~v 90 (195)
+|+||.|.|+|++++.+||+ +|||++..+.+ ..+ +...+.....+..... ...++.|++| .+
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 65 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEGD-----GLE-LRTAGNDHRWARLLEG---------ARKRLAYLSFGIFE 65 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeecC-----ceE-EEecCCCceEEEeecC---------CCCceeeEEEEeEh
Confidence 68999999999999999997 69999976542 233 3332212111111111 1123445444 45
Q ss_pred CCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecC
Q 029305 91 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 138 (195)
Q Consensus 91 ~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~ 138 (195)
+|+++++++|+++|+++...+ ... +.+.+||.|||||.|||...+
T Consensus 66 ~d~~~~~~~l~~~Gi~~~~~~-~~~--~~~~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 66 DDFAAFARHLEAAGVALAAAP-PGA--DPDGVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred hhHHHHHHHHHHcCCceecCC-CcC--CCCEEEEECCCCCEEEEecCC
Confidence 799999999999999987654 222 235799999999999999754
No 66
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.68 E-value=1.5e-15 Score=109.97 Aligned_cols=114 Identities=26% Similarity=0.310 Sum_probs=78.6
Q ss_pred ceEEEEcCCHHHHHHHHHhccCCeEeecCCCCC-CCccEEEeecCc-EEEEeeeCCCCCCCCCCCCCCCCceEEEEEeCC
Q 029305 15 NHISLVCRSVEASLDFYQNVLGFFPIRRPGSFD-FDGACRLFNYGM-GIHLLKSEEPDNLPKAGKNINPKDNHISFQCEN 92 (195)
Q Consensus 15 ~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~-~~~~~~~~~~g~-~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~d 92 (195)
+||.|.|+|++++.+||+++|||++....+... ....| +..+. ...+..... ....+..|++|.|+|
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~---------~~~~~~~hl~~~v~d 69 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDPGVDAAAF--LRCDEDHHDLALFPG---------PERPGLHHVAFEVES 69 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccCCceeEEE--EEcCCCcceEEEEcC---------CCCCCeeEEEEEcCC
Confidence 599999999999999999999999876533100 11233 22221 111111111 114578999999997
Q ss_pred HH---HHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCC
Q 029305 93 MA---IVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 139 (195)
Q Consensus 93 l~---~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~ 139 (195)
++ +++++|++.|+++...+......+.+.+||.|||||.|||++..+
T Consensus 70 ~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 70 LDDILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred HHHHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 64 788999999999886653322223478899999999999998654
No 67
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.68 E-value=2.1e-15 Score=105.92 Aligned_cols=106 Identities=19% Similarity=0.225 Sum_probs=75.3
Q ss_pred eEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecC---cEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeCC
Q 029305 16 HISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYG---MGIHLLKSEEPDNLPKAGKNINPKDNHISFQCEN 92 (195)
Q Consensus 16 hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g---~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~d 92 (195)
...|.|+|++++.+||+++|||+.....+ ...+ +...+ ..+.+.... .......|++|.|+|
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~~i~~~v~d 67 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMDHG----WIAT-FASPQNMTVQVSLATEG----------GTATVVPDLSIEVDD 67 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEcCC----ceEE-EeecCCCCcEEEEecCC----------CCCCCCCEEEEEeCC
Confidence 35688999999999999999999875422 1111 11111 223332111 111235699999999
Q ss_pred HHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEec
Q 029305 93 MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 137 (195)
Q Consensus 93 l~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~ 137 (195)
+++++++|++.|+++...+.. ..++.+.+|+.|||||.|||++.
T Consensus 68 ~~~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 68 VDAALARAVAAGFAIVYGPTD-EPWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHHHHHhcCCeEecCCcc-CCCceEEEEEECCCCCEEEEEEc
Confidence 999999999999998876633 23455789999999999999975
No 68
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.68 E-value=7.6e-16 Score=126.56 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=79.5
Q ss_pred cccCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCC---CccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceE
Q 029305 9 LCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDF---DGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNH 85 (195)
Q Consensus 9 ~~i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~---~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~H 85 (195)
+.+++|+||.|.|+|++++.+||+++|||++..+....+. ...| +..+...+.+... . . ...++++|
T Consensus 141 ~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------~-~-~~~g~~~H 210 (303)
T TIGR03211 141 VGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAW--LSVSNKAHDIAFV------G-D-PEPGKLHH 210 (303)
T ss_pred cCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEE--EEcCCCCccccee------c-C-CCCCceEE
Confidence 5578999999999999999999999999998654211100 1122 2222122111110 0 0 11233899
Q ss_pred EEEEeCC---HHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEec
Q 029305 86 ISFQCEN---MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 137 (195)
Q Consensus 86 iaf~v~d---l~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~ 137 (195)
+||.|+| ++++.++|+++|+++...+...+....+.+||.|||||.||++..
T Consensus 211 iaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 265 (303)
T TIGR03211 211 VSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFGG 265 (303)
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEecC
Confidence 9999996 555778999999998766533322234799999999999999843
No 69
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.68 E-value=2.2e-15 Score=105.19 Aligned_cols=108 Identities=20% Similarity=0.321 Sum_probs=78.6
Q ss_pred EEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeec-CcEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeCCHHHH
Q 029305 18 SLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNY-GMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCENMAIV 96 (195)
Q Consensus 18 ~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~-g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~dl~~~ 96 (195)
.|.|+|++++++||+++|||++....+. ..|..+.. +..+++....... + ....+..|++|.++|++++
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~--~----~~~~~~~~~~~~~~~~~~~ 72 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHPE----PGYAFLSRGGAQLMLSEHDGDE--P----VPLGRGGSVYIEVEDVDAL 72 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcCC----CcEEEEEeCCEEEEEeccCCCC--C----CCCCCcEEEEEEeCCHHHH
Confidence 6899999999999999999999876541 23334443 3455554433211 1 1234567999999999999
Q ss_pred HHHHHhCCCe-EeccceecCCcceEEEEEECCCCCEEEEEe
Q 029305 97 ERRLKEMKID-YVKSRVEEGGINVDQLFFHDPDGSMIEICN 136 (195)
Q Consensus 97 ~~~l~~~gv~-~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~ 136 (195)
.+++.++|++ +..++. ...++.+.+|+.||+|+.||+++
T Consensus 73 ~~~l~~~G~~~~~~~~~-~~~~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 73 YAELKAKGADLIVYPPE-DQPWGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHHcCCcceecCcc-CCCcccEEEEEECCCCCEEEecC
Confidence 9999999998 444442 23345589999999999999975
No 70
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.66 E-value=4.3e-15 Score=105.78 Aligned_cols=106 Identities=16% Similarity=0.310 Sum_probs=76.8
Q ss_pred eEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecC-cEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeCCHH
Q 029305 16 HISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYG-MGIHLLKSEEPDNLPKAGKNINPKDNHISFQCENMA 94 (195)
Q Consensus 16 hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g-~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~dl~ 94 (195)
...|.|+|+++|++||++ |||+...+... .|..+..+ ..+++...... .......|++|.|+|++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~-----~~~~~~~~~~~l~l~~~~~~--------~~~~~~~~~~~~v~dvd 70 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA-----GYMILRRGDLELHFFAHPDL--------DPATSPFGCCLRLPDVA 70 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC-----CEEEEEcCCEEEEEEecCcC--------CCCCCcceEEEEeCCHH
Confidence 467899999999999999 99999876541 34344443 45666543211 11122458999999999
Q ss_pred HHHHHHHhCCCeEe-------ccceecCCcceEEEEEECCCCCEEEEEe
Q 029305 95 IVERRLKEMKIDYV-------KSRVEEGGINVDQLFFHDPDGSMIEICN 136 (195)
Q Consensus 95 ~~~~~l~~~gv~~~-------~~~~~~~~~~~~~~~~~DPdGn~iEi~~ 136 (195)
+++++|+++|+++. ..+ ....++.+.++|.|||||.|||.+
T Consensus 71 ~~~~~l~~~G~~~~~~~~~~~~~~-~~~~~g~~~~~~~DPdG~~ie~~~ 118 (120)
T cd08350 71 ALHAEFRAAGLPETGSGIPRITPP-EDQPWGMREFALVDPDGNLLRFGQ 118 (120)
T ss_pred HHHHHHHHhCccccccCCCcccCC-cCCCCceeEEEEECCCCCEEEeec
Confidence 99999999999853 122 222346689999999999999987
No 71
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.65 E-value=3.4e-15 Score=102.75 Aligned_cols=111 Identities=26% Similarity=0.500 Sum_probs=82.9
Q ss_pred eEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeec-CcEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeCCHH
Q 029305 16 HISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNY-GMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCENMA 94 (195)
Q Consensus 16 hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~-g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~dl~ 94 (195)
|+.+.|+|++++.+||+++||++........ ...+..+.. +..+++....+... + ....+..|++|.++|++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~--~~~~~~~~~~~~~i~l~~~~~~~~-~----~~~~~~~~~~~~v~~~~ 73 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNG--GAEFAVLGLGGTRLELFEGDEPAP-A----PSGGGGVHLAFEVDDVD 73 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccC--CEEEEEEecCCceEEEecCCCCCC-c----ccCCCeeEEEEECCCHH
Confidence 7899999999999999999999988876421 123323443 35566665543221 1 23566899999999999
Q ss_pred HHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEE
Q 029305 95 IVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEI 134 (195)
Q Consensus 95 ~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi 134 (195)
++.++|.++|+.+...+.. ...+.+.+|+.||+||.|||
T Consensus 74 ~~~~~l~~~g~~~~~~~~~-~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 74 AAYERLKAAGVEVLGEPRE-EPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHHcCCcccCCCcC-CCCCcEEEEEECCCCcEEeC
Confidence 9999999999988876631 22345899999999999986
No 72
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.65 E-value=7.4e-15 Score=105.96 Aligned_cols=109 Identities=14% Similarity=0.226 Sum_probs=73.3
Q ss_pred ccceEEEEcCCHHHHHHHHHhccCCeEeecCCCC---------CCCccEE--Eeec---C--cEEEEeeeCCCCCCCCCC
Q 029305 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSF---------DFDGACR--LFNY---G--MGIHLLKSEEPDNLPKAG 76 (195)
Q Consensus 13 ~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~---------~~~~~~~--~~~~---g--~~~~ll~~~~~~~~~~~~ 76 (195)
++.|+.|.|+|+++|++||+++|||++..+.... .+.+.|. .+.. . ..++|.........
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~---- 77 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDY---- 77 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCC----
Confidence 5789999999999999999999999987765311 1123331 1321 1 23444432221111
Q ss_pred CCCCCCceEEEEEeCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEe
Q 029305 77 KNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 136 (195)
Q Consensus 77 ~~~~~g~~Hiaf~v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~ 136 (195)
..+.+ |++|.|++. ++.++|+++|+++...+. + .+++.||||+.|||+.
T Consensus 78 -~~g~~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~---~----~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 78 -ELGND--FLGITIHSK-QAVSNAKKHNWPVTEVED---G----VYEVKAPGGYKFYLID 126 (127)
T ss_pred -CCCCC--EEEEEEECH-HHHHHHHHCCCceecCCC---C----EEEEECCCCCEEEEec
Confidence 22223 677777766 566999999999887552 2 7899999999999974
No 73
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.64 E-value=6e-15 Score=120.64 Aligned_cols=120 Identities=21% Similarity=0.327 Sum_probs=79.1
Q ss_pred cccCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccE-EEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEE
Q 029305 9 LCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAC-RLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHIS 87 (195)
Q Consensus 9 ~~i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~-~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hia 87 (195)
+.+++|+||.|.|+|+++|.+||+++|||++..+..... ...+ ..+..+...+.+... . ...++++|+|
T Consensus 132 ~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~Hia 201 (294)
T TIGR02295 132 VSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDE-GNLAAAWLHRKGGVHDIALT------N---GNGPRLHHIA 201 (294)
T ss_pred ccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCC-CcEEEEEEecCCCcCceEee------c---CCCCceeeEE
Confidence 467899999999999999999999999999876532110 1111 011111111111110 0 2236799999
Q ss_pred EEeCC---HHHHHHHHHhCCCe--EeccceecCCcceEEEEEECCCCCEEEEEecC
Q 029305 88 FQCEN---MAIVERRLKEMKID--YVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 138 (195)
Q Consensus 88 f~v~d---l~~~~~~l~~~gv~--~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~ 138 (195)
|.|+| ++++.++|+++|++ +...+...+......+|++||+||.|||+...
T Consensus 202 f~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 202 YWVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred EEcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 99997 55568899999987 54443222211235799999999999999854
No 74
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.62 E-value=1.5e-14 Score=117.96 Aligned_cols=117 Identities=19% Similarity=0.196 Sum_probs=78.3
Q ss_pred cCccceEEEEcCCHHHHHHHHHhccCCeEeecCCC--C-C--CCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceE
Q 029305 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGS--F-D--FDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNH 85 (195)
Q Consensus 11 i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~--~-~--~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~H 85 (195)
..+|+||.|.|+|+++|.+||+++|||++..+... . . +...| +..+...+.+.... ....++++|
T Consensus 140 ~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~--l~~~~~~~~~~l~~--------~~~~~~~~H 209 (286)
T TIGR03213 140 DQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYF--LHCNERHHSLAFAA--------GPSEKRLNH 209 (286)
T ss_pred CccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEE--EEECCCcceEEEec--------CCCCCceEE
Confidence 46899999999999999999999999998654210 0 0 01223 22221111111110 022457899
Q ss_pred EEEEeCCHHH---HHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecC
Q 029305 86 ISFQCENMAI---VERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 138 (195)
Q Consensus 86 iaf~v~dl~~---~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~ 138 (195)
+||.|+|+++ +.++|+++|+ ....+......+...+|++|||||.||+....
T Consensus 210 iaf~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~~ 264 (286)
T TIGR03213 210 LMLEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWGA 264 (286)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecCc
Confidence 9999997666 7899999999 43333222223557899999999999998853
No 75
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.61 E-value=1.9e-14 Score=101.65 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=72.4
Q ss_pred EEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecC-cEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeCCHHH
Q 029305 17 ISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYG-MGIHLLKSEEPDNLPKAGKNINPKDNHISFQCENMAI 95 (195)
Q Consensus 17 v~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g-~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~dl~~ 95 (195)
..|.|+|+++|++||++ |||++..+.+. +..+..+ ..+.+...... ...+..+++|.|+|+++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~~------~~~l~~~~~~l~l~~~~~~---------~~~~~~~~~~~v~did~ 68 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWENDN------LAYFRLGNCAFYLQDYYVK---------DWAENSMLHLEVDDLEA 68 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCCC------EEEEEcCCEEEEeecCCCc---------ccccCCEEEEEECCHHH
Confidence 46889999999999988 99999876531 2234444 33433221111 11224579999999999
Q ss_pred HHHHHHhCCCeEec-----cceecCCcceEEEEEECCCCCEEEEEe
Q 029305 96 VERRLKEMKIDYVK-----SRVEEGGINVDQLFFHDPDGSMIEICN 136 (195)
Q Consensus 96 ~~~~l~~~gv~~~~-----~~~~~~~~~~~~~~~~DPdGn~iEi~~ 136 (195)
++++|+++|+++.. ++. ...++.+.++|.|||||.|+|.+
T Consensus 69 ~~~~l~~~G~~~~~~~~~~~~~-~~~~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 69 YYEHIKALGLPKKFPGVKLPPI-TQPWWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHHcCCcccccceecCcc-ccCCCcEEEEEECCCccEEEeeC
Confidence 99999999987532 221 22345689999999999999864
No 76
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.61 E-value=2.3e-14 Score=101.36 Aligned_cols=114 Identities=22% Similarity=0.253 Sum_probs=76.7
Q ss_pred EEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEee-cCcEEEEeeeCCCCCCCCCC-CCCCCCceEEEEEe---C
Q 029305 17 ISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFN-YGMGIHLLKSEEPDNLPKAG-KNINPKDNHISFQC---E 91 (195)
Q Consensus 17 v~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~-~g~~~~ll~~~~~~~~~~~~-~~~~~g~~Hiaf~v---~ 91 (195)
|.|.|+|++++.+||+++|||++..+.. . ... .+. .+..+.++............ .....+..|++|.+ +
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~~-~--~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADSN-D--GVA--FFQLGGLVLALFPREELAKDAGVPVPPPGFSGITLAHNVRSEE 76 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccCC-C--ceE--EEEcCCeEEEEecchhhhhhcCCCCCCCCccceEEEEEcCCHH
Confidence 6899999999999999999999977622 1 112 233 34455555433211111100 02223445677665 4
Q ss_pred CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEe
Q 029305 92 NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 136 (195)
Q Consensus 92 dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~ 136 (195)
+++++++++++.|+++...+... .++++.+|++|||||.|||+.
T Consensus 77 d~~~~~~~l~~~G~~~~~~~~~~-~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 77 EVDAVLARAAAAGATIVKPPQDV-FWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHHHHHHHHhCCCEEecCCccC-CCCceEEEEECCCCCEEEEee
Confidence 89999999999999998765332 344689999999999999985
No 77
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=8.9e-13 Score=96.01 Aligned_cols=123 Identities=24% Similarity=0.319 Sum_probs=81.7
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeecCCC---------------------CCCCccEEEeecCcEEEEeeeCCCC
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGS---------------------FDFDGACRLFNYGMGIHLLKSEEPD 70 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~---------------------~~~~~~~~~~~~g~~~~ll~~~~~~ 70 (195)
-.+.|..++++|+.+|..||++++|+.+..+..- ......| .+.....++|.......
T Consensus 21 ~~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~-~~~~~~~~ELthn~Gte 99 (170)
T KOG2944|consen 21 YLLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVF-VFSRNAKLELTHNWGTE 99 (170)
T ss_pred hhhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceE-EecccCceeeecCCCCC
Confidence 3456777777777777777777777766553210 0011234 33334456665544443
Q ss_pred CCCCCC---CCCCC-CceEEEEEeCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEec
Q 029305 71 NLPKAG---KNINP-KDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 137 (195)
Q Consensus 71 ~~~~~~---~~~~~-g~~Hiaf~v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~ 137 (195)
+.+... ....+ |..||||.|+|++.+..+|++.||++...+ .++.. ...+|+.||||+.|||...
T Consensus 100 s~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~-~dGk~-K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 100 SPPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKL-KDGKM-KPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred CCcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecC-CCccc-cceeEEECCCCCeEEEeec
Confidence 333111 13334 899999999999999999999999976655 33332 4689999999999999864
No 78
>PLN02300 lactoylglutathione lyase
Probab=99.48 E-value=1.4e-12 Score=106.52 Aligned_cols=121 Identities=16% Similarity=0.207 Sum_probs=85.4
Q ss_pred cCccceEEEEcCCHHHHHHHHHhccCCeEeecCCC--CCCCccEEEeec-C----cEEEEeeeCCCCCCCCCCCCCCCCc
Q 029305 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGS--FDFDGACRLFNY-G----MGIHLLKSEEPDNLPKAGKNINPKD 83 (195)
Q Consensus 11 i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~--~~~~~~~~~~~~-g----~~~~ll~~~~~~~~~~~~~~~~~g~ 83 (195)
...+.|+.|.|+|++++.+||+++||+++..+... ..+...+ +.. + ..+++..... . ... ..+++.
T Consensus 152 ~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lel~~~~~---~-~~~-~~g~~~ 224 (286)
T PLN02300 152 PEPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAM--MGYGPEDKTTVLELTYNYG---V-TEY-TKGNAY 224 (286)
T ss_pred CCcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEE--EecCCCCCccEEEEeecCC---C-Ccc-ccCCce
Confidence 45788999999999999999999999999764321 1121122 221 1 1233322111 1 111 334678
Q ss_pred eEEEEEeCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecC
Q 029305 84 NHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 138 (195)
Q Consensus 84 ~Hiaf~v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~ 138 (195)
.|++|.|+|++++.+++.++|+++..++....+.+.+.++|.||||+.|+|++..
T Consensus 225 ~~i~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~ 279 (286)
T PLN02300 225 AQIAIGTDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNI 279 (286)
T ss_pred eEEEEecCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccc
Confidence 8999999999999999999999998876544443447889999999999999864
No 79
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.46 E-value=2.4e-13 Score=95.45 Aligned_cols=98 Identities=22% Similarity=0.354 Sum_probs=70.9
Q ss_pred ceEEEEcCCHHHHHHHHHhccCCeEeecCCC--CCCCccEEEeecC-cEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeC
Q 029305 15 NHISLVCRSVEASLDFYQNVLGFFPIRRPGS--FDFDGACRLFNYG-MGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE 91 (195)
Q Consensus 15 ~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~--~~~~~~~~~~~~g-~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~ 91 (195)
+||.|.|+|++++++||+++||++....... ......+.....+ ..++|++...+.... .....|++|+||.|+
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~~~~---~~~~~gi~Hia~~v~ 77 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDGDSPL---DRGGGGIHHIAFEVD 77 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESSTTCHH---HHTSSEEEEEEEEES
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCCCccc---ccCCCCEEEEEEEeC
Confidence 6999999999999999999999987654221 1122333122222 478999877654211 146788999999999
Q ss_pred CHHHHHHHHHhCCCeEeccceecC
Q 029305 92 NMAIVERRLKEMKIDYVKSRVEEG 115 (195)
Q Consensus 92 dl~~~~~~l~~~gv~~~~~~~~~~ 115 (195)
|+++..++|+++|+++...+...+
T Consensus 78 D~d~~~~~l~~~G~~~~~~~~~~g 101 (109)
T PF13669_consen 78 DLDAAIARLEAQGFRVLDEGPRPG 101 (109)
T ss_dssp HHHHHHHHHHHTTECEEECEEEET
T ss_pred CHHHHHHHHHHCCCEEcccCcccC
Confidence 999999999999999887654443
No 80
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.35 E-value=9.6e-12 Score=87.21 Aligned_cols=119 Identities=23% Similarity=0.282 Sum_probs=84.8
Q ss_pred eEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCC--CCCCCCceEEEEEeC--
Q 029305 16 HISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAG--KNINPKDNHISFQCE-- 91 (195)
Q Consensus 16 hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~--~~~~~g~~Hiaf~v~-- 91 (195)
.|.|+|+||++|.+||+. |||+.-...... .........+..+-|++...-.....+. ......-.-+|+.+.
T Consensus 6 FvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde--~a~~mi~~~ni~vMLL~~~~fq~F~~~~i~dt~~s~evli~ls~~s~ 82 (133)
T COG3607 6 FVNLPVKDLEASKAFYTA-LGFKFNPQFSDE--DAACMIISDNIFVMLLEEARFQTFTKRQIADTTKSREVLISLSAGSR 82 (133)
T ss_pred EEecchhhHHHHHHHHHH-hCcccCCCcccc--cceeEEEeccEEEEEeccHHhhhhcccccccccCCceEEEEeccCcH
Confidence 689999999999999988 999998765422 3333245555666666544322222111 133344566888887
Q ss_pred -CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCC
Q 029305 92 -NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 139 (195)
Q Consensus 92 -dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~ 139 (195)
+++++.++..+.|.+...++...+.. +...|.|||||.||+.++.+
T Consensus 83 eevd~~v~ka~eaGGk~~~~~~d~gfM--Yg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 83 EEVDELVDKALEAGGKPANEPQDEGFM--YGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred HHHHHHHHHHHHcCCCCCCCccccccc--cceeeeCCCCCeEEEEEeCH
Confidence 68999999999999987777666655 46679999999999999765
No 81
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.25 E-value=1.2e-10 Score=97.87 Aligned_cols=173 Identities=10% Similarity=0.067 Sum_probs=105.9
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecC-cEEEEeeeCCCCCCCC-CCCCCCCCceEEEEE
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYG-MGIHLLKSEEPDNLPK-AGKNINPKDNHISFQ 89 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g-~~~~ll~~~~~~~~~~-~~~~~~~g~~Hiaf~ 89 (195)
.+++||.+.|+|++++.+||++.|||+...+..... ...+..+..| ..+.+.....+.+... .....++|+.|+||.
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~-~~~~~~~~~G~~~l~L~~~~~~~s~~~~~~~~hg~gv~~iaf~ 79 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHR-EKASHVLRQGQINFVLTAPYSSDSPAADFAAKHGDGVKDVAFR 79 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCC-ceeEEEEEeCCEEEEEecCCCCCchHHHHHHhCCCceEEEEEE
Confidence 368999999999999999999999999887621000 1122244444 4555554332211110 001356889999999
Q ss_pred eCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCCC--CCCCCCCcchhhcccccccchhhhhhh
Q 029305 90 CENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVL--PVVPLAGDAVRIRSCTSTVNCNFHQQQ 167 (195)
Q Consensus 90 v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~ 167 (195)
|+|++++++++.++|+++..++...........-+.-++|..+-+++...- ..+|.... ... . .+.... ..
T Consensus 80 V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~~~~~~~~~~~~~----~~~-~-~~~~~~-~~ 152 (353)
T TIGR01263 80 VDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRGGYKGSFYPGFFE----SLL-D-AALHEP-PP 152 (353)
T ss_pred ECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCCCCCCCCCCCccc----ccc-c-cccccC-CC
Confidence 999999999999999999877644310122344456778888888764331 12222110 000 0 000000 00
Q ss_pred hhhcCCCCCCCcccc--cccccccccc
Q 029305 168 IQQEPQINPQSCLSD--SIHAKEDFLH 192 (195)
Q Consensus 168 ~~~~~~~~~~~~~~~--~~~~~~~~~~ 192 (195)
...=..|.|+++..+ |...+.+||.
T Consensus 153 ~~~~~~iDHv~i~V~~~dl~~~~~fY~ 179 (353)
T TIGR01263 153 GVGLIAIDHLVGNVYRGQMEPWAEFYE 179 (353)
T ss_pred CCCeEEeeeeEcccCCccHHHHHHHHH
Confidence 001235999999999 9999999985
No 82
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.24 E-value=5.2e-10 Score=80.00 Aligned_cols=115 Identities=16% Similarity=0.168 Sum_probs=81.5
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecC---cEEEEeeeCCCCCCCCCCCCCCCCceEEEE
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYG---MGIHLLKSEEPDNLPKAGKNINPKDNHISF 88 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g---~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf 88 (195)
..+.|..|.++|++++.+||+++||++.....+-. ...+..+..+ .+=.+.... .. ....+...+.|
T Consensus 8 ~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~--~~~y~~f~~~~~~~gG~l~~~~---~~-----~p~~~~~~iy~ 77 (127)
T COG3324 8 GTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMG--EMRYAVFPADGAGAGGGLMARP---GS-----PPGGGGWVIYF 77 (127)
T ss_pred CccEEEeeecCCHHHHHHHHHHhhCceecccccCC--CceEEEEECCCccccceeccCC---cC-----CCCCCCEEEEE
Confidence 55789999999999999999999999998764311 1112123221 111111110 00 11145667889
Q ss_pred EeCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEec
Q 029305 89 QCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 137 (195)
Q Consensus 89 ~v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~ 137 (195)
.|+|+++.++++.+.|-.++.++.+-.+ +++.+.+.||+||+|-|...
T Consensus 78 ~v~did~~l~rv~~~GG~V~~p~~~~p~-~G~~a~~~Dp~Gn~~~l~s~ 125 (127)
T COG3324 78 AVDDIDATLERVVAAGGKVLRPKTEFPG-GGRIAHFVDPEGNRFGLWSP 125 (127)
T ss_pred ecCChHHHHHHHHhcCCeEEecccccCC-ceEEEEEECCCCCEEEEeec
Confidence 9999999999999999999998866554 45899999999999999863
No 83
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.23 E-value=1.6e-10 Score=79.91 Aligned_cols=123 Identities=17% Similarity=0.241 Sum_probs=78.8
Q ss_pred cceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEE--EeC
Q 029305 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISF--QCE 91 (195)
Q Consensus 14 i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf--~v~ 91 (195)
+-|+.+.|+||+++++||.++||.+.....++. ..+.+++.....|+-...+. ...++-.....-..|+.. .++
T Consensus 5 ~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd~w---vdfDfyGHQ~v~Hl~~q~~~-~~~g~V~~~~v~~pHfGvVl~~e 80 (138)
T COG3565 5 PFHLAIPVNDLDETRRFYGEVLGCKEGRSTDTW---VDFDFYGHQVVAHLTPQPDS-QGSGKVDGHGVPPPHFGVVLPVE 80 (138)
T ss_pred ceEEeeeccccHHHHhhhhhhcccccccccceE---EEeeecccEEEEEecCCccc-ccCcccCCCCCCCccceEEEEHH
Confidence 569999999999999999999999987765521 11112222233444221111 111110122222456554 455
Q ss_pred CHHHHHHHHHhCCCeEeccceec--CCc-ceEEEEEECCCCCEEEEEecCCC
Q 029305 92 NMAIVERRLKEMKIDYVKSRVEE--GGI-NVDQLFFHDPDGSMIEICNCDVL 140 (195)
Q Consensus 92 dl~~~~~~l~~~gv~~~~~~~~~--~~~-~~~~~~~~DPdGn~iEi~~~~~~ 140 (195)
|.-++.++|+++|++...+|.-. +.. ..+.+++.||.||.+|+-..+..
T Consensus 81 dW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR~~ 132 (138)
T COG3565 81 DWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFRDQ 132 (138)
T ss_pred HHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecccch
Confidence 89999999999999988777421 111 35789999999999999886553
No 84
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.21 E-value=6e-11 Score=91.55 Aligned_cols=101 Identities=17% Similarity=0.282 Sum_probs=69.4
Q ss_pred cCccceEEEEcC--CHHHHHHHHHhccCCeEeecCCCCC-CCcc-EEEeec---CcEEEEeeeCCCCCC--CCC--CCCC
Q 029305 11 LKSLNHISLVCR--SVEASLDFYQNVLGFFPIRRPGSFD-FDGA-CRLFNY---GMGIHLLKSEEPDNL--PKA--GKNI 79 (195)
Q Consensus 11 i~~i~hv~l~v~--dl~~s~~FY~~~LG~~~~~~~~~~~-~~~~-~~~~~~---g~~~~ll~~~~~~~~--~~~--~~~~ 79 (195)
+++|+||++.|+ |++++.+||+++|||+........+ ..+. +..+.. +..+.|.+...+... ... ....
T Consensus 1 ~~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~~s~~~~fl~~~~ 80 (191)
T cd07250 1 LTRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKRKSQIQEFLEYYG 80 (191)
T ss_pred CceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCCccHHHHHHHHhC
Confidence 467999999999 9999999999999999877543211 1111 112222 234555544331000 000 0134
Q ss_pred CCCceEEEEEeCCHHHHHHHHHhCCCeEeccc
Q 029305 80 NPKDNHISFQCENMAIVERRLKEMKIDYVKSR 111 (195)
Q Consensus 80 ~~g~~Hiaf~v~dl~~~~~~l~~~gv~~~~~~ 111 (195)
++|+.|+||.|+|+++++++|+++|+++...|
T Consensus 81 G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P 112 (191)
T cd07250 81 GAGVQHIALATDDIFATVAALRARGVEFLPIP 112 (191)
T ss_pred CCceeEEEEECCCHHHHHHHHHHcCCeeccCc
Confidence 67999999999999999999999999998765
No 85
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.15 E-value=1.6e-10 Score=81.54 Aligned_cols=122 Identities=25% Similarity=0.295 Sum_probs=73.2
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCc--cEEEeecCc--EEEEeeeC-------CCCCCCCC-CCCC
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDG--ACRLFNYGM--GIHLLKSE-------EPDNLPKA-GKNI 79 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~--~~~~~~~g~--~~~ll~~~-------~~~~~~~~-~~~~ 79 (195)
++++||.|.|+|+++|.+||+++||++...+........ ....+.... ........ ........ ....
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 368999999999999999999999999988765321111 110111110 00110000 00000000 0011
Q ss_pred C-CCceEEEEEeCC---HHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEe
Q 029305 80 N-PKDNHISFQCEN---MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 136 (195)
Q Consensus 80 ~-~g~~Hiaf~v~d---l~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~ 136 (195)
. .+..|+++.+++ .......+...|..+..... .. ....+||+||||+.||+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~--~~-~~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP--GR-GGVHVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEeeCCCCCEEEeecC--CC-cceEEEEECCCCcEEEeeC
Confidence 1 357899999997 66666666677888765443 11 1138999999999999974
No 86
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.02 E-value=1.6e-08 Score=72.81 Aligned_cols=111 Identities=17% Similarity=0.108 Sum_probs=70.0
Q ss_pred EEEEc-CCHHHHHHHHHhccCCeEeecCCCCC--------CCc--cEEEeecC-cEEEEeeeCCCCCCCCCCCCCCCCce
Q 029305 17 ISLVC-RSVEASLDFYQNVLGFFPIRRPGSFD--------FDG--ACRLFNYG-MGIHLLKSEEPDNLPKAGKNINPKDN 84 (195)
Q Consensus 17 v~l~v-~dl~~s~~FY~~~LG~~~~~~~~~~~--------~~~--~~~~~~~g-~~~~ll~~~~~~~~~~~~~~~~~g~~ 84 (195)
..|.+ .|.+++++||+++||+++........ ..+ ....+..+ ..+.+.... + ... ....+..
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~-~-~~~----~~~~~~~ 76 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGG-P-GFP----FTFGNGI 76 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCC-C-CCC----CCCCCCE
Confidence 34666 89999999999999999887542100 011 11223333 333333222 1 111 1123456
Q ss_pred EEEEEeCC---HHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEE
Q 029305 85 HISFQCEN---MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 135 (195)
Q Consensus 85 Hiaf~v~d---l~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~ 135 (195)
++++.|++ +++++++|.+.| ++..++. ...++.+..+++||+|+.|+|.
T Consensus 77 ~l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~-~~~~g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 77 SLSVECDSEEEADRLFEALSEGG-TVLMPLQ-KTFWSPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-eEeccch-hcCcccccEEEECCCCCEEEeC
Confidence 88999985 778889987766 6665553 3356668999999999999973
No 87
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.96 E-value=3.6e-09 Score=89.01 Aligned_cols=104 Identities=15% Similarity=0.267 Sum_probs=71.7
Q ss_pred CcccCccceEEEEcC--CHHHHHHHHHhccCCeEeecCCC-CCCCcc--EEEee-cC-cEEEEeeeCCCC--CCCCC--C
Q 029305 8 PLCLKSLNHISLVCR--SVEASLDFYQNVLGFFPIRRPGS-FDFDGA--CRLFN-YG-MGIHLLKSEEPD--NLPKA--G 76 (195)
Q Consensus 8 ~~~i~~i~hv~l~v~--dl~~s~~FY~~~LG~~~~~~~~~-~~~~~~--~~~~~-~g-~~~~ll~~~~~~--~~~~~--~ 76 (195)
.+.+.+|+||++.|. |++++.+||+++|||+...+.+- ..+.+. +.+.. .| ..+.|.+..... +.... .
T Consensus 153 ~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g~~~i~L~ep~~~~~~s~i~~fl~ 232 (353)
T TIGR01263 153 GVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDGKVKIPLNEPASGKDKSQIEEFLE 232 (353)
T ss_pred CCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCCcEEEEEeccCCCCCCCHHHHHHH
Confidence 466889999999999 99999999999999998765331 011121 21222 22 456665532111 10000 1
Q ss_pred CCCCCCceEEEEEeCCHHHHHHHHHhCCCeEeccc
Q 029305 77 KNINPKDNHISFQCENMAIVERRLKEMKIDYVKSR 111 (195)
Q Consensus 77 ~~~~~g~~Hiaf~v~dl~~~~~~l~~~gv~~~~~~ 111 (195)
...+.|+.|+||.|+|+++.+++|+++|+++...|
T Consensus 233 ~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P 267 (353)
T TIGR01263 233 FYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTP 267 (353)
T ss_pred HcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCC
Confidence 13468999999999999999999999999988765
No 88
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.83 E-value=3.8e-08 Score=81.20 Aligned_cols=103 Identities=15% Similarity=0.186 Sum_probs=70.5
Q ss_pred eEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeC---C
Q 029305 16 HISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE---N 92 (195)
Q Consensus 16 hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~---d 92 (195)
||+|.|+|+++|++||+.+||+.. ...++ . . .+ +..+..+....++ .....-.-+|+.++ +
T Consensus 250 fVNLpV~DL~rS~~FYt~LF~~n~-Fsde~----a-~-cm--~dtI~vMllt~~D-------~~~~~evLl~Ls~~Sre~ 313 (357)
T PRK01037 250 SVVLEVQDLRRAKKFYSKMFGLEC-WDGDK----L-F-LL--GKTSLYLQQTKAE-------KKNRGTTTLSLELECEHD 313 (357)
T ss_pred EEEeeeCCHHHHHHHHHHHhCCCC-CCCCc----c-c-cc--cCcEEEEEecCCC-------CCCcceEEEEeccCCHHH
Confidence 999999999999999999988885 43332 1 2 22 3333333222221 22233456888888 6
Q ss_pred HHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecC
Q 029305 93 MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 138 (195)
Q Consensus 93 l~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~ 138 (195)
++++.++..++|.....++ .+.|+ .--|.||||+.||+++..
T Consensus 314 VD~lv~~A~aaGG~~~~~~-~D~Gf---~rsf~D~DGH~WEi~~~~ 355 (357)
T PRK01037 314 FVRFLRRWEMLGGELGEQA-DGHFP---LRLVFDLDGHIWVVSCVQ 355 (357)
T ss_pred HHHHHHHHHHcCCCCCCCc-ccccC---cceeECCCCCEEEEEEEe
Confidence 8889999999998664444 45554 446899999999999753
No 89
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.74 E-value=7.9e-08 Score=81.52 Aligned_cols=103 Identities=12% Similarity=0.180 Sum_probs=71.3
Q ss_pred cccCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCC----CCccE-EEeecC---cEEEEeeeCCC---CCCCCC--
Q 029305 9 LCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFD----FDGAC-RLFNYG---MGIHLLKSEEP---DNLPKA-- 75 (195)
Q Consensus 9 ~~i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~----~~~~~-~~~~~g---~~~~ll~~~~~---~~~~~~-- 75 (195)
..+.+|+||++.|.+++.+..||+++|||+..+..+..+ ..+.. ..+..+ ..+.|.+.... .+....
T Consensus 176 ~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipLnEP~~~~~~~SqI~eFL 255 (398)
T PLN02875 176 YGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPLNEPTFGTKRKSQIQTYL 255 (398)
T ss_pred CCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEeccCCCCCCCcChHHHHH
Confidence 347899999999999999999999999998876433111 11111 122222 44666654321 111111
Q ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHhC----CCeEeccc
Q 029305 76 GKNINPKDNHISFQCENMAIVERRLKEM----KIDYVKSR 111 (195)
Q Consensus 76 ~~~~~~g~~Hiaf~v~dl~~~~~~l~~~----gv~~~~~~ 111 (195)
....++|+.||||.++|+.+..+.|+++ |+++...|
T Consensus 256 ~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 256 EHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred HhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 1245689999999999999999999998 99998754
No 90
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.73 E-value=7.8e-07 Score=64.65 Aligned_cols=119 Identities=17% Similarity=0.127 Sum_probs=76.5
Q ss_pred EEEEcC-CHHHHHHHHHhccCCeEeecCCCCCC--------Ccc--EEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceE
Q 029305 17 ISLVCR-SVEASLDFYQNVLGFFPIRRPGSFDF--------DGA--CRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNH 85 (195)
Q Consensus 17 v~l~v~-dl~~s~~FY~~~LG~~~~~~~~~~~~--------~~~--~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~H 85 (195)
.-|..+ |-+++++||+++||.+.+.+....+. .+. ...+..+....++....+ ..... ..++...-
T Consensus 4 PYl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~-~~~~~--~~~~~s~~ 80 (136)
T COG2764 4 PYLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFP-DMGAT--EGGGTSLS 80 (136)
T ss_pred eEEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCCC-ccCcc--cCCCeeEE
Confidence 356778 99999999999999998876432110 011 112333323333322222 11110 11223345
Q ss_pred EEEEeCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCC
Q 029305 86 ISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 139 (195)
Q Consensus 86 iaf~v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~ 139 (195)
+.+.+.+++++++++.+.|++++.+. ...-|+.+...++||.|+.|-|....+
T Consensus 81 l~~~~~d~da~f~~a~~aGa~v~mpl-~~~fwG~r~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 81 LDLYVEDVDAVFERAAAAGATVVMPL-EDTFWGDRYGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EEEEehHHHHHHHHHHhcCCeEEecc-hhcCcccceEEEECCCCCEEEEecCcc
Confidence 66777799999999999998887766 345566689999999999999987543
No 91
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.72 E-value=7.8e-08 Score=74.93 Aligned_cols=116 Identities=18% Similarity=0.287 Sum_probs=76.2
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeecCC---------CCCCCccEE--EeecC--cEEEEeeeCCCCCCCCCCCC
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPG---------SFDFDGACR--LFNYG--MGIHLLKSEEPDNLPKAGKN 78 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~---------~~~~~~~~~--~~~~g--~~~~ll~~~~~~~~~~~~~~ 78 (195)
.+.-|+++.|.|..++++||+++|||++.+..+ +-++++.|. +++.| ....+++..- +..-....
T Consensus 16 ~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTY--NYgV~~Ye 93 (299)
T KOG2943|consen 16 RRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTY--NYGVSKYE 93 (299)
T ss_pred hheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEe--ccCcccee
Confidence 456699999999999999999999999988543 123455552 34444 2222232222 12222236
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecC
Q 029305 79 INPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 138 (195)
Q Consensus 79 ~~~g~~Hiaf~v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~ 138 (195)
.+.++.|+.+.++++-...+.+...+- . .++ .-.+++.||||+.++|.+..
T Consensus 94 lGndfg~i~I~s~dv~~~ve~v~~p~~---~----~~g--~~~~~v~dPdGykF~l~~~~ 144 (299)
T KOG2943|consen 94 LGNDFGGITIASDDVFSKVEKVNAPGG---K----GSG--CGIAFVKDPDGYKFYLIDRG 144 (299)
T ss_pred ccCCcccEEEeHHHHHHHHHHhcCcCC---c----ccc--eEEEEEECCCCcEEEEeccC
Confidence 778899999988877666555543332 1 122 24779999999999999843
No 92
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.71 E-value=6.8e-07 Score=62.65 Aligned_cols=114 Identities=21% Similarity=0.182 Sum_probs=63.4
Q ss_pred eEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeCCHHH
Q 029305 16 HISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCENMAI 95 (195)
Q Consensus 16 hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~dl~~ 95 (195)
+-+|.|+|-+...+||+++|||++..+.. ++..++.......+..+..+....+.-...-.+.++.+.+++..+
T Consensus 3 ~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~E 76 (125)
T PF14506_consen 3 IPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPKE 76 (125)
T ss_dssp EEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHHH
T ss_pred CceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHHH
Confidence 56899999999999999999999998754 333455444333333222212221111333468999999998877
Q ss_pred HHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCC
Q 029305 96 VERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 139 (195)
Q Consensus 96 ~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~ 139 (195)
+.+.| .+|..+..-- .|-.+++|-..+|+|+.+.|...++
T Consensus 77 Ie~LL-ar~~~~~~l~---kg~~gyAfe~vSPEgd~~llhaEdd 116 (125)
T PF14506_consen 77 IEALL-ARGAQYDRLY---KGKNGYAFEAVSPEGDRFLLHAEDD 116 (125)
T ss_dssp HHHHH-HC-S--SEEE---E-SSSEEEEEE-TT--EEEEE--S-
T ss_pred HHHHH-hcccccceeE---EcCCceEEEEECCCCCEEEEEEcCC
Confidence 77666 4444432221 1223378899999999999998654
No 93
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.67 E-value=1.7e-07 Score=74.49 Aligned_cols=98 Identities=16% Similarity=0.205 Sum_probs=64.3
Q ss_pred cCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcE-EEEeeeCCCCCCCCCCCCCCCCceEEEEE
Q 029305 11 LKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMG-IHLLKSEEPDNLPKAGKNINPKDNHISFQ 89 (195)
Q Consensus 11 i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~-~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~ 89 (195)
-+.|+||+|.|.|++++.+||+++|||++..+.+ .+. ++..|.. .|+..-.-...-.........|+..+.+.
T Consensus 166 ~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~----~A~--F~a~G~YHHHia~N~W~s~~~~~~~~~~~GLa~~~i~ 239 (265)
T COG2514 166 GTIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP----SAL--FLASGDYHHHLAANTWNSRGARPRNANASGLAWLEIH 239 (265)
T ss_pred CcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC----cce--EEecCCcceeEEEeccccCCCCCCCCCCCCcceEEEE
Confidence 5779999999999999999999999999998833 233 4555544 44432222211111112567889999999
Q ss_pred eCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEE
Q 029305 90 CENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 135 (195)
Q Consensus 90 v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~ 135 (195)
+++-..+...... ..||.|+.|.+.
T Consensus 240 ~~~~~~l~~~~~~---------------------~~Dp~G~~i~~~ 264 (265)
T COG2514 240 TPDPEKLDATGTR---------------------LTDPWGIVIRVV 264 (265)
T ss_pred cCCcccccccccc---------------------eecCCCceEEEe
Confidence 8864433211110 179999998875
No 94
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.59 E-value=3.4e-07 Score=71.38 Aligned_cols=114 Identities=16% Similarity=0.289 Sum_probs=75.2
Q ss_pred cceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCc---EEEEeeeCCCCCCCCCCCCCCCCceEEEEEe
Q 029305 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGM---GIHLLKSEEPDNLPKAGKNINPKDNHISFQC 90 (195)
Q Consensus 14 i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~---~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v 90 (195)
+..|.|.|.||++|+.||+++||+++.+..... ..+ .++.|. .++|....+.- ....|...++|.+
T Consensus 150 v~~V~l~VgdL~ks~kyw~~~lgM~ilekeek~--t~~--~mgYgd~q~~LElt~~~~~i-------d~~kg~griafai 218 (299)
T KOG2943|consen 150 VLQVMLNVGDLQKSIKYWEKLLGMKILEKEEKY--TRA--RMGYGDEQCVLELTYNYDVI-------DRAKGFGRIAFAI 218 (299)
T ss_pred eEEEEEEehhHHHHHHHHHHHhCcchhhhhhhh--hhh--hhccCCcceEEEEEeccCcc-------cccccceeEEEec
Confidence 568999999999999999999999998853321 112 344443 34444333221 3334566677777
Q ss_pred C--CHHHHHHHHHhCCCeEeccce---ecCCcceEEEEEECCCCCEEEEEecC
Q 029305 91 E--NMAIVERRLKEMKIDYVKSRV---EEGGINVDQLFFHDPDGSMIEICNCD 138 (195)
Q Consensus 91 ~--dl~~~~~~l~~~gv~~~~~~~---~~~~~~~~~~~~~DPdGn~iEi~~~~ 138 (195)
+ ++..+.+.++..+-++..+.. ..++...+...+.||||+.|-++...
T Consensus 219 p~d~~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde 271 (299)
T KOG2943|consen 219 PTDDLPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDE 271 (299)
T ss_pred cccccccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccH
Confidence 6 666666666665444433322 12455778999999999999998754
No 95
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.47 E-value=6.6e-07 Score=67.89 Aligned_cols=123 Identities=17% Similarity=0.206 Sum_probs=63.8
Q ss_pred cceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCC--CccEEEeecCcEEEEeeeCCCCCCC--CCC-----CCCCCCce
Q 029305 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDF--DGACRLFNYGMGIHLLKSEEPDNLP--KAG-----KNINPKDN 84 (195)
Q Consensus 14 i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~--~~~~~~~~~g~~~~ll~~~~~~~~~--~~~-----~~~~~g~~ 84 (195)
|+||.+.|+|++++.++|++.|||.+.....+... ......+..+ .++++........+ ... .....|+.
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~-YlEli~i~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDG-YLELIAIDPEAPAPDRGRWFGLDRLAGGEGLY 79 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSS-EEEEEEES-HHHSTGGGT-TTTHHHHT--EEE
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCc-eEEEEEeCCcccccccccceechhhcCCCCeE
Confidence 68999999999999999977899999886554321 2233355555 99999865433221 111 02467899
Q ss_pred EEEEEeCCHHHHHHHHHhCCCeEeccceecCCc-ceEEEEEECC----CCCEEEEEec
Q 029305 85 HISFQCENMAIVERRLKEMKIDYVKSRVEEGGI-NVDQLFFHDP----DGSMIEICNC 137 (195)
Q Consensus 85 Hiaf~v~dl~~~~~~l~~~gv~~~~~~~~~~~~-~~~~~~~~DP----dGn~iEi~~~ 137 (195)
++|+.++|+++..++|++.|+........+++. ..+.+++.++ .+..-+++++
T Consensus 80 ~~~l~t~d~~~~~~~l~~~G~~~~~r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~ 137 (175)
T PF13468_consen 80 GWALRTDDIEAVAARLRAAGLDAGSRVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQW 137 (175)
T ss_dssp EEEEE-S-HHHHHHHHHTTT-EEEEEEEEEE-EEEEEEEEEE-SS---SS---EEEEE
T ss_pred EEEEecCCHHHHHHHHHhcCCCCCCcCcCCCCcceEEEEEeCCcccccCCCCcEEEEe
Confidence 999999999999999999998732222222221 2244555553 2445555543
No 96
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.44 E-value=4.8e-06 Score=70.77 Aligned_cols=171 Identities=11% Similarity=0.009 Sum_probs=104.0
Q ss_pred cceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCC--CccEEEeecCcEEEEeeeCC-CC--C----------CCCC---
Q 029305 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDF--DGACRLFNYGMGIHLLKSEE-PD--N----------LPKA--- 75 (195)
Q Consensus 14 i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~--~~~~~~~~~g~~~~ll~~~~-~~--~----------~~~~--- 75 (195)
++||.+.|.|.+++..||+..|||+.+...+.... ...-..+..|.-..++...- +. . .+..
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFSSD 80 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeCCEEEEEeCCCCCccccccccccccccccccCcH
Confidence 58999999999999999999999998775441100 11112455553333333221 10 0 0000
Q ss_pred -----CCCCCCCceEEEEEeCCHHHHHHHHHhCCCeEeccceecCC----cceEEEEEECCCCCEEEEEecCCCCCC-CC
Q 029305 76 -----GKNINPKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGG----INVDQLFFHDPDGSMIEICNCDVLPVV-PL 145 (195)
Q Consensus 76 -----~~~~~~g~~Hiaf~v~dl~~~~~~l~~~gv~~~~~~~~~~~----~~~~~~~~~DPdGn~iEi~~~~~~~~~-p~ 145 (195)
....+++..-+||+|+|++.+++++.++|.+....+...+. ......-+.-++|..+-|++...-... -+
T Consensus 81 ~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~~~~~~~f~ 160 (398)
T PLN02875 81 AARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYKGFDGAKFL 160 (398)
T ss_pred HHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccCCCCCCccC
Confidence 01345788899999999999999999999998877654321 113455577788999888885431111 11
Q ss_pred CCcchhhcccccccchhhhhhhhhhcCCCCCCCcccccccccccccc
Q 029305 146 AGDAVRIRSCTSTVNCNFHQQQIQQEPQINPQSCLSDSIHAKEDFLH 192 (195)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (195)
+....+.. . .... ....=..|.|++...|+...+.+||.
T Consensus 161 p~f~~~~~-~-~~~~------~~~gl~~IDHi~iaV~~ld~a~~fY~ 199 (398)
T PLN02875 161 PGYEPVES-S-SSFP------LDYGLRRLDHAVGNVPNLLPAVNYIA 199 (398)
T ss_pred CCcccccc-c-ccCC------CCCCcceeCcceechhhHHHHHHHHH
Confidence 11100100 0 0000 00012379999999999999999885
No 97
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.31 E-value=1.9e-06 Score=62.90 Aligned_cols=124 Identities=22% Similarity=0.373 Sum_probs=79.1
Q ss_pred CCCcccCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecC-cEEEEeeeCCCCCCCCC-CCCCCCCc
Q 029305 6 ENPLCLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYG-MGIHLLKSEEPDNLPKA-GKNINPKD 83 (195)
Q Consensus 6 ~~~~~i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g-~~~~ll~~~~~~~~~~~-~~~~~~g~ 83 (195)
.||+.+.++++|.+.+.+.++...+++ .|||+.+.+-.+ .... ++..| +.+.+- .+ +.+.... ....+++.
T Consensus 2 ~nP~g~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrs---k~v~-l~rQG~I~~vln-~e-p~s~a~~~~~~HG~sv 74 (139)
T PF14696_consen 2 DNPLGLDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRS---KDVT-LYRQGDINFVLN-SE-PDSFAAEFAAQHGPSV 74 (139)
T ss_dssp --TT-EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECC---CSEE-EEEETTEEEEEE-EE-STSCHHHHHHHHSSEE
T ss_pred CCCCCCCCeEEEEEecCCHHHHHHHHH-HhCcceEEecCC---cceE-EEEeCCEEEEEe-CC-CcchHHHHHHhcCCEE
Confidence 368899999999999999888888885 599999876432 2333 55555 344333 22 2111100 02446788
Q ss_pred eEEEEEeCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecC
Q 029305 84 NHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 138 (195)
Q Consensus 84 ~Hiaf~v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~ 138 (195)
.-++|+|+|...++++..+.|.+....+...+. ...--++-++|..+-++...
T Consensus 75 ~aiafrV~Da~~A~~rA~~~GA~~~~~~~~~~e--~~~paI~g~G~sl~yfVdr~ 127 (139)
T PF14696_consen 75 CAIAFRVDDAAAAYERAVALGAEPVQEPTGPGE--LNIPAIRGIGGSLHYFVDRY 127 (139)
T ss_dssp EEEEEEES-HHHHHHHHHHTT--EEEEEEETT---BEEEEEE-CCC-EEEEEE--
T ss_pred EEEEEEeCCHHHHHHHHHHcCCcCcccCCCCCc--EeeeeEEccCCCEEEEEecC
Confidence 999999999999999999999998877654443 24566788888888888853
No 98
>PRK10148 hypothetical protein; Provisional
Probab=98.10 E-value=0.00036 Score=51.55 Aligned_cols=117 Identities=12% Similarity=0.002 Sum_probs=70.2
Q ss_pred EEEEcC-CHHHHHHHHHhccCCeEeecCC--CC---------C-------CCcc--EEEeecCcEEEEeeeCCCCCCCCC
Q 029305 17 ISLVCR-SVEASLDFYQNVLGFFPIRRPG--SF---------D-------FDGA--CRLFNYGMGIHLLKSEEPDNLPKA 75 (195)
Q Consensus 17 v~l~v~-dl~~s~~FY~~~LG~~~~~~~~--~~---------~-------~~~~--~~~~~~g~~~~ll~~~~~~~~~~~ 75 (195)
.-|..+ |-+++.+||+++||.++..... .. + .++. ...+..+.. .++..+.....
T Consensus 5 pyL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~-~lm~sD~~~~~--- 80 (147)
T PRK10148 5 PYLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGS-DIMMSDAIPSG--- 80 (147)
T ss_pred EEEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCE-EEEEECCCCCc---
Confidence 455565 8999999999999998764310 00 0 0111 112333322 33333321111
Q ss_pred CCCCCCCceEEEEEeCCHHH---HHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCCCC
Q 029305 76 GKNINPKDNHISFQCENMAI---VERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLP 141 (195)
Q Consensus 76 ~~~~~~g~~Hiaf~v~dl~~---~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~~~ 141 (195)
.......++++.++|.++ +++.| +.|.++..+. .+..|+.+...+.||.|+.|-|......|
T Consensus 81 --~~~~~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl-~~~~wg~~~g~v~D~fGi~W~l~~~~~~~ 145 (147)
T PRK10148 81 --KAHYSGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAW-QETFWAHGFGKVTDKFGVPWMINVVKQQP 145 (147)
T ss_pred --CCCCCeEEEEEECCCHHHHHHHHHHh-hCCCEEEecc-hhcchhhccEEEECCCCCEEEEEecCCCC
Confidence 111135678888888776 66666 5777777655 33455667889999999999998865544
No 99
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.05 E-value=2.6e-05 Score=63.36 Aligned_cols=127 Identities=14% Similarity=0.156 Sum_probs=77.9
Q ss_pred ccCccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEE--EeecCcEEEEeee-CCCCCC-CCC-CCCCCCCce
Q 029305 10 CLKSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACR--LFNYGMGIHLLKS-EEPDNL-PKA-GKNINPKDN 84 (195)
Q Consensus 10 ~i~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~--~~~~g~~~~ll~~-~~~~~~-~~~-~~~~~~g~~ 84 (195)
.+.+++||.+.|.|...+..||+..|||++....+-......|. .+..|.-..++.. ..+... .+. ....+.|..
T Consensus 14 ~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hgdgvk 93 (381)
T KOG0638|consen 14 KFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGDGVK 93 (381)
T ss_pred ceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcccchh
Confidence 47889999999999999999999999999876432100011111 2334423333322 222110 110 014455677
Q ss_pred EEEEEeCCHHHHHHHHHhCCCeEeccceecCCc--ceEEEEEECCCCCEEEEEe
Q 029305 85 HISFQCENMAIVERRLKEMKIDYVKSRVEEGGI--NVDQLFFHDPDGSMIEICN 136 (195)
Q Consensus 85 Hiaf~v~dl~~~~~~l~~~gv~~~~~~~~~~~~--~~~~~~~~DPdGn~iEi~~ 136 (195)
-+||.|+|++++.+.+.++|+.+..++...... ..+.+.+..+.-...-+++
T Consensus 94 dvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvE 147 (381)
T KOG0638|consen 94 DVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVE 147 (381)
T ss_pred ceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhh
Confidence 899999999999999999999998886433111 2355555555433333333
No 100
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=97.89 E-value=1.4e-05 Score=65.85 Aligned_cols=103 Identities=16% Similarity=0.250 Sum_probs=69.4
Q ss_pred cccCccceEEEEcC--CHHHHHHHHHhccCCeEeecCCCC-CCCccEE---EeecC-cEEEEeeeCCCCCCCCCC--CCC
Q 029305 9 LCLKSLNHISLVCR--SVEASLDFYQNVLGFFPIRRPGSF-DFDGACR---LFNYG-MGIHLLKSEEPDNLPKAG--KNI 79 (195)
Q Consensus 9 ~~i~~i~hv~l~v~--dl~~s~~FY~~~LG~~~~~~~~~~-~~~~~~~---~~~~g-~~~~ll~~~~~~~~~~~~--~~~ 79 (195)
..+..|+|++..|. .++.+..||+++|||+.....+-. +..+... ....| ..+-|-+..+..+..... ...
T Consensus 163 ~g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y~ 242 (363)
T COG3185 163 VGLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREYR 242 (363)
T ss_pred cCceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHhC
Confidence 45689999999985 999999999999999987753311 1111110 11122 233333333322211110 256
Q ss_pred CCCceEEEEEeCCHHHHHHHHHhCCCeEeccc
Q 029305 80 NPKDNHISFQCENMAIVERRLKEMKIDYVKSR 111 (195)
Q Consensus 80 ~~g~~Hiaf~v~dl~~~~~~l~~~gv~~~~~~ 111 (195)
+.|+.||||.++|+-+..++|++.|+++...|
T Consensus 243 G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip 274 (363)
T COG3185 243 GEGIQHIAFGTDDIYATVAALRERGVKFLPIP 274 (363)
T ss_pred CCcceEEEecccHHHHHHHHHHHcCCccCCCc
Confidence 77999999999999999999999999988765
No 101
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=97.55 E-value=0.0012 Score=54.70 Aligned_cols=119 Identities=20% Similarity=0.345 Sum_probs=78.7
Q ss_pred CCCCcccCccceEEEEcCCH-HHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCC-CCCCCCCCC
Q 029305 5 VENPLCLKSLNHISLVCRSV-EASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLP-KAGKNINPK 82 (195)
Q Consensus 5 ~~~~~~i~~i~hv~l~v~dl-~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~-~~~~~~~~g 82 (195)
..+|+...++.+|.+.|.|. ++...++.. |||.....--+ ..+. ++..| .+.++-...+.+.. ......+++
T Consensus 14 ~~~P~~~~GfeFvEf~~~d~~~~l~~l~~~-lGF~~~~~Hrs---k~v~-l~rQG-dinlvvn~~~~s~a~~f~~~Hgps 87 (363)
T COG3185 14 LANPEGTDGFEFVEFAVPDPQEALGALLGQ-LGFTAVAKHRS---KAVT-LYRQG-DINLVVNAEPDSFAAEFLDKHGPS 87 (363)
T ss_pred ccCCCCCCceeEEEEecCCHHHHHHHHHHH-hCccccccccc---ccee-EEEeC-CEEEEEcCCCcchhhHHHHhcCCc
Confidence 34667789999999999999 666666655 99998765332 2344 55555 33333222222211 111366788
Q ss_pred ceEEEEEeCCHHHHHHHHHhCCCeEecccee--------cCCcceEEEEEECCCC
Q 029305 83 DNHISFQCENMAIVERRLKEMKIDYVKSRVE--------EGGINVDQLFFHDPDG 129 (195)
Q Consensus 83 ~~Hiaf~v~dl~~~~~~l~~~gv~~~~~~~~--------~~~~~~~~~~~~DPdG 129 (195)
.+-++|.|+|...++++..+.|.+....+.. -.+.+..-+||.|.+|
T Consensus 88 ~~a~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~ 142 (363)
T COG3185 88 ACAMAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYG 142 (363)
T ss_pred hheeEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCC
Confidence 8999999999999999999999854443321 1233457889999883
No 102
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=97.38 E-value=0.00027 Score=49.16 Aligned_cols=82 Identities=13% Similarity=0.063 Sum_probs=58.7
Q ss_pred eEEEEEeCCHHHHHHHHHh-CCCeEeccceecCCcceEEEEEECCCC-CEEEEEecCCCCCCCCCCcchhhcccccccch
Q 029305 84 NHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDG-SMIEICNCDVLPVVPLAGDAVRIRSCTSTVNC 161 (195)
Q Consensus 84 ~Hiaf~v~dl~~~~~~l~~-~gv~~~~~~~~~~~~~~~~~~~~DPdG-n~iEi~~~~~~~~~p~~~~~~~~~~~~~~~~~ 161 (195)
.|++|.|+|++++.+.+.+ .|+....... ....+.+..++..++| ..|||++..... +. ++.
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~-~~~~~v~~~~~~~~~~~~~iELi~p~~~~------------~~---~~~ 64 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYR-DEPQGVRVAFLYLGDGPVQIELIQPLDGD------------SP---LDR 64 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEE-EGCTTEEEEEEEETTETEEEEEEEESSTT------------CH---HHH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEe-cCCCCEEEEEEEeCCCcEEEEEEEeCCCC------------cc---ccc
Confidence 5999999999999999998 8987654332 2233456778888888 689999943311 11 111
Q ss_pred hhhhhhhhhcCCCCCCCccccccccccc
Q 029305 162 NFHQQQIQQEPQINPQSCLSDSIHAKED 189 (195)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (195)
..+.++|+.|.++|++++.+
T Consensus 65 --------~~~gi~Hia~~v~D~d~~~~ 84 (109)
T PF13669_consen 65 --------GGGGIHHIAFEVDDLDAAIA 84 (109)
T ss_dssp --------TSSEEEEEEEEESHHHHHHH
T ss_pred --------CCCCEEEEEEEeCCHHHHHH
Confidence 67889999999999988754
No 103
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=96.98 E-value=0.00091 Score=54.60 Aligned_cols=100 Identities=19% Similarity=0.264 Sum_probs=69.1
Q ss_pred cccCccceEEEEcC--CHHHHHHHHHhccCCeEeecCCCCCCCcc------EEEeecCcEEEEeeeCCCCCCCCCC----
Q 029305 9 LCLKSLNHISLVCR--SVEASLDFYQNVLGFFPIRRPGSFDFDGA------CRLFNYGMGIHLLKSEEPDNLPKAG---- 76 (195)
Q Consensus 9 ~~i~~i~hv~l~v~--dl~~s~~FY~~~LG~~~~~~~~~~~~~~~------~~~~~~g~~~~ll~~~~~~~~~~~~---- 76 (195)
+.+..|+|++..++ .++.+.+||.+.|||..-+..+..+.... +.+......+. +.... +.+++.
T Consensus 174 ~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan~~esi~-mpinE--p~~G~k~ksQ 250 (381)
T KOG0638|consen 174 GGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLANYEESIK-MPINE--PAPGKKKKSQ 250 (381)
T ss_pred cceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhcCCccEE-EeccC--CCCCCccHHH
Confidence 45788999999999 78899999999999988776542221111 10111222232 22222 222221
Q ss_pred ------CCCCCCceEEEEEeCCHHHHHHHHHhCCCeEeccc
Q 029305 77 ------KNINPKDNHISFQCENMAIVERRLKEMKIDYVKSR 111 (195)
Q Consensus 77 ------~~~~~g~~Hiaf~v~dl~~~~~~l~~~gv~~~~~~ 111 (195)
...++|+.|+++.++|+-++.+.|+++|.+....|
T Consensus 251 Iqeyv~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~P 291 (381)
T KOG0638|consen 251 IQEYVEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLSPP 291 (381)
T ss_pred HHHHHHhcCCCceeeeeecchHHHHHHHHHHhcCCccccCC
Confidence 35778999999999999999999999999988665
No 104
>PF15067 FAM124: FAM124 family
Probab=96.43 E-value=0.013 Score=45.96 Aligned_cols=104 Identities=20% Similarity=0.289 Sum_probs=62.1
Q ss_pred ccceEEEEcC--CHHHHHHHHHhccCCeEeecCCCCCCCccEEEe-ecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEE
Q 029305 13 SLNHISLVCR--SVEASLDFYQNVLGFFPIRRPGSFDFDGACRLF-NYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQ 89 (195)
Q Consensus 13 ~i~hv~l~v~--dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~-~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~ 89 (195)
.|-.++|.|+ |.+.+++||+-+|+-+...+...+ ..|.++ ..+..+.+--..-+.... .......-+.|.
T Consensus 128 EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~~F---C~F~lys~~~~~iQlsLK~lp~~~~----p~p~esavLqF~ 200 (236)
T PF15067_consen 128 EILRFTLYCSFDNYEDMVRFYELILQREPTQQKEDF---CFFTLYSQPGLDIQLSLKQLPPGMS----PEPTESAVLQFR 200 (236)
T ss_pred cEEEEEEEecCCCHHHHHHHHHHHhccCcceeeCCc---EEEEEecCCCeEEEEEeccCCCCCC----cccccceEEEEE
Confidence 3456889998 999999999999999887766543 222122 223334333222111111 122234568999
Q ss_pred eCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEE
Q 029305 90 CENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIE 133 (195)
Q Consensus 90 v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iE 133 (195)
|.++.++...|-.-=.++ .++.| -..|||||.|=
T Consensus 201 V~~igqLvpLLPnpc~PI-----S~~rW-----qT~D~DGNkIL 234 (236)
T PF15067_consen 201 VEDIGQLVPLLPNPCSPI-----SETRW-----QTEDYDGNKIL 234 (236)
T ss_pred ecchhhhcccCCCCcccc-----cCCcc-----eeeCCCCCEec
Confidence 999999877662211111 12223 47899999874
No 105
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=95.92 E-value=0.018 Score=39.57 Aligned_cols=92 Identities=21% Similarity=0.220 Sum_probs=43.9
Q ss_pred ccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeC-
Q 029305 13 SLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCE- 91 (195)
Q Consensus 13 ~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~- 91 (195)
.+..+.|+|.| +++.+||+++||-+.. ..+.+.+..+++-.. .+ ...=++..+-|.|+
T Consensus 5 ~~e~i~LNV~d-~~~~~fy~~~f~~~~~------------------~~l~f~ea~G~DL~~-~~-~~twDLe~Lkf~V~~ 63 (101)
T PF14507_consen 5 EFESIELNVPD-AKSQSFYQSIFGGQLP------------------FFLTFQEAQGPDLTI-EN-NETWDLEMLKFQVPK 63 (101)
T ss_dssp EE-EEEEEE-T--T---S--H---HHHT------------------TTEEEEE---CCGSS--T-TSBSSEEEEEEEES-
T ss_pred EEEEEEEeCCC-hhHHHHHHhccccCCC------------------ceEEEeeccCCcccc-CC-CcEEeeEEEEEEecC
Confidence 35679999999 8899999998862211 122233333332111 11 33446778889998
Q ss_pred --CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEE
Q 029305 92 --NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIE 133 (195)
Q Consensus 92 --dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iE 133 (195)
|+.++.+++.+.++-+... + +.+...||.|..|-
T Consensus 64 ~~Dl~~L~~~le~~~~fidKk-----~---k~l~~~Dps~IElW 99 (101)
T PF14507_consen 64 DFDLAALKSHLEEQEFFIDKK-----E---KFLVTSDPSQIELW 99 (101)
T ss_dssp S--HHHHHHHTTTS-EE--TT---------SEEEEE-TTS-EEE
T ss_pred cccHHHHHHHhcccceEecCC-----c---eEEEEECCcceEEE
Confidence 7899999998855433221 1 57888999886553
No 106
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=94.90 E-value=0.67 Score=32.64 Aligned_cols=96 Identities=19% Similarity=0.275 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHhccCCeEeecCCCCC-----CCc-c-EEEeecCcEEEEeeeCCCCCCCCCCCCCCCCceEEEEEeCC--
Q 029305 22 RSVEASLDFYQNVLGFFPIRRPGSFD-----FDG-A-CRLFNYGMGIHLLKSEEPDNLPKAGKNINPKDNHISFQCEN-- 92 (195)
Q Consensus 22 ~dl~~s~~FY~~~LG~~~~~~~~~~~-----~~~-~-~~~~~~g~~~~ll~~~~~~~~~~~~~~~~~g~~Hiaf~v~d-- 92 (195)
.+.++|.+||+++||-..+......+ ... . ...+..+ +..++..+..+. ........+++.+++
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~-g~~lm~~D~~~~------~~~~~~~sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIG-GQKLMASDGGPD------FPFGNNISLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEET-TEEEEEEEESTS----------TTEEEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEEC-CeEEEEECCCCC------CCCCCcEEEEEEcCCHH
Confidence 58999999999999943322211110 011 1 1122222 233333332211 112234678888885
Q ss_pred -HHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEE
Q 029305 93 -MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 135 (195)
Q Consensus 93 -l~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~ 135 (195)
++.++++|.+-|- +....-.+.|.-|..|.|+
T Consensus 84 e~~~~f~~Ls~gG~-----------~~~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDKLSEGGQ-----------WFSRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHTTTE-----------TCCEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHcCCC-----------ccceeEEEEeCCCCEEEeC
Confidence 5667778876664 1125668999999999875
No 107
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=94.85 E-value=0.12 Score=39.62 Aligned_cols=92 Identities=11% Similarity=-0.006 Sum_probs=57.3
Q ss_pred CceEEEEEeC--CHHHHHHHHHh-CCCeEecccee-cCCcceEEEEEECCCC-CEEEEEecCCCCCCCCCCcchhhcccc
Q 029305 82 KDNHISFQCE--NMAIVERRLKE-MKIDYVKSRVE-EGGINVDQLFFHDPDG-SMIEICNCDVLPVVPLAGDAVRIRSCT 156 (195)
Q Consensus 82 g~~Hiaf~v~--dl~~~~~~l~~-~gv~~~~~~~~-~~~~~~~~~~~~DPdG-n~iEi~~~~~~~~~p~~~~~~~~~~~~ 156 (195)
++.|+++.|+ |++.+.+...+ .|.+....... ....+....++..|+| ..++|.+... +. .
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~----~~-~--------- 68 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPAS----GK-R--------- 68 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCC----CC-C---------
Confidence 4789999999 99999988765 78876553321 1112346677888765 4577775321 00 0
Q ss_pred cccchhhhhhhhhhcCCCCCCCccccccccccc
Q 029305 157 STVNCNFHQQQIQQEPQINPQSCLSDSIHAKED 189 (195)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (195)
.+.-.-.-.....+.++|+.|.++||.++.+
T Consensus 69 --~s~~~~fl~~~~G~Gv~HIAf~vdDI~~~~~ 99 (191)
T cd07250 69 --KSQIQEFLEYYGGAGVQHIALATDDIFATVA 99 (191)
T ss_pred --ccHHHHHHHHhCCCceeEEEEECCCHHHHHH
Confidence 0100111112235899999999999988765
No 108
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=92.69 E-value=2.1 Score=29.21 Aligned_cols=57 Identities=11% Similarity=0.130 Sum_probs=39.6
Q ss_pred CceEEEEEeCCHHHHHHHHHh-CCCeEeccceecCCcceEEEEEECCCCCEEEEEecCC
Q 029305 82 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 139 (195)
Q Consensus 82 g~~Hiaf~v~dl~~~~~~l~~-~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~ 139 (195)
++.|+++.|+|+++..+...+ .|.++......... ....+.+..+++..+|+.....
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~i~l~~~~~ 60 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPER-GSYKLDLLLNGGYQLELFSFPN 60 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCC-CcEEEEEecCCCcEEEEEEcCC
Confidence 578999999999999998875 79987654322221 1123445566778899886543
No 109
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=92.23 E-value=1.9 Score=29.55 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=39.6
Q ss_pred CceEEEEEeCCHHHHHHHHHh-CCCeEeccceecCCcceEEEEEECC---CCCEEEEEecCC
Q 029305 82 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDP---DGSMIEICNCDV 139 (195)
Q Consensus 82 g~~Hiaf~v~dl~~~~~~l~~-~gv~~~~~~~~~~~~~~~~~~~~DP---dGn~iEi~~~~~ 139 (195)
|+.|+++.|+|+++..+-..+ .|.+.........+.....+++.+. .|..++++....
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 62 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPD 62 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCC
Confidence 468999999999999998875 6988765432112111234555554 677899987644
No 110
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=91.60 E-value=2.4 Score=31.42 Aligned_cols=88 Identities=13% Similarity=0.107 Sum_probs=52.6
Q ss_pred CCceEEEEEeCCHHHHHHHHHh-CCCeEeccce---ec------------C-Cc-ceEEEEEECCCCCEEEEEecCCCCC
Q 029305 81 PKDNHISFQCENMAIVERRLKE-MKIDYVKSRV---EE------------G-GI-NVDQLFFHDPDGSMIEICNCDVLPV 142 (195)
Q Consensus 81 ~g~~Hiaf~v~dl~~~~~~l~~-~gv~~~~~~~---~~------------~-~~-~~~~~~~~DPdGn~iEi~~~~~~~~ 142 (195)
.++.|+++.|.|+++..+--.+ .|.++...+. .. + .+ .....++..++|..||+++.....
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~- 81 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQE- 81 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCC-
Confidence 3689999999999999998876 6887642210 00 0 11 134566766788899999975421
Q ss_pred CCCCC-----cchhhcccccccchhhhhhhhhh
Q 029305 143 VPLAG-----DAVRIRSCTSTVNCNFHQQQIQQ 170 (195)
Q Consensus 143 ~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
.|... .|..-... ..-|++...++++.
T Consensus 82 ~~~~~~~~~~~g~~Hla~-~v~dida~~~~l~~ 113 (162)
T TIGR03645 82 NPEDNFEYWKTGVFHFCV-QDPDVEGLAERIVA 113 (162)
T ss_pred CCCcccccccccceEEEE-EcCCHHHHHHHHHH
Confidence 12211 22222222 33467777766554
No 111
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=91.59 E-value=2.4 Score=30.10 Aligned_cols=57 Identities=18% Similarity=0.370 Sum_probs=39.5
Q ss_pred CceEEEEEeCCHHHHHHHHHhCCCeEeccceecC----------CcceEEEEEECCCC-CEEEEEecC
Q 029305 82 KDNHISFQCENMAIVERRLKEMKIDYVKSRVEEG----------GINVDQLFFHDPDG-SMIEICNCD 138 (195)
Q Consensus 82 g~~Hiaf~v~dl~~~~~~l~~~gv~~~~~~~~~~----------~~~~~~~~~~DPdG-n~iEi~~~~ 138 (195)
++.|+++.|.|+++..+...+.|.++.......+ +......++..|+| ..||+.+..
T Consensus 3 ~i~Hi~i~v~Dl~~s~~FY~~LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~ 70 (142)
T cd08353 3 RMDNVGIVVRDLEAAIAFFLELGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFH 70 (142)
T ss_pred eeeeEEEEeCCHHHHHHHHHHcCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEec
Confidence 5789999999999999988889987754431111 11234556666665 589999853
No 112
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=90.44 E-value=1.5 Score=28.82 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=36.6
Q ss_pred CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCC
Q 029305 92 NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 139 (195)
Q Consensus 92 dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~ 139 (195)
+.+++.+.|.+.|+.+..-...+++ .+.+...|.||+.+||.-++.
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~g--~yev~~~~~dG~~~ev~vD~~ 75 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDDG--CYEVEARDKDGKKVEVYVDPA 75 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCCC--EEEEEEEECCCCEEEEEEcCC
Confidence 7899999999999977665543343 268889999999999998644
No 113
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=90.36 E-value=0.48 Score=35.62 Aligned_cols=53 Identities=11% Similarity=0.220 Sum_probs=30.0
Q ss_pred ceEEEEEeCCHHHHHHHH-HhCCCeEeccceecCCcceEEEEEECCCCCEEEEEec
Q 029305 83 DNHISFQCENMAIVERRL-KEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 137 (195)
Q Consensus 83 ~~Hiaf~v~dl~~~~~~l-~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~ 137 (195)
+.|+.+.|+|++++.+++ +..|..+....... ++|.....+.=+|| .|||+..
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~-~~GT~N~li~f~~~-YlEli~i 54 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHP-GWGTANALIPFGDG-YLELIAI 54 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-T-TT-EEEEEEE-SSS-EEEEEEE
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCC-CCccEEEEEeeCCc-eEEEEEe
Confidence 469999999999999999 78899988765433 22334433334777 9999995
No 114
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=89.58 E-value=3.3 Score=27.36 Aligned_cols=83 Identities=6% Similarity=0.058 Sum_probs=47.1
Q ss_pred ceEEEEEeCCHHHHHHHHH-hCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCCCCCCCCCCcchhhcccccccch
Q 029305 83 DNHISFQCENMAIVERRLK-EMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVVPLAGDAVRIRSCTSTVNC 161 (195)
Q Consensus 83 ~~Hiaf~v~dl~~~~~~l~-~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~~~~~p~~~~~~~~~~~~~~~~~ 161 (195)
+.|+++.|+|+++..+-.. -.|......+... ....++..+++..++|.........+... +.....+...-|+
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~----~~~~~~~~~~~~~i~l~~~~~~~~~~~~~-~~~~~~~~~v~d~ 75 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL----FPGAWLYAGDGPQLHLIEEDPPDALPEGP-GRDDHIAFRVDDL 75 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC----CCceEEEeCCCcEEEEEecCCCccccCCC-cccceEEEEeCCH
Confidence 4699999999999998886 5688766543211 12345665666688988754432111111 1111122133456
Q ss_pred hhhhhhhhh
Q 029305 162 NFHQQQIQQ 170 (195)
Q Consensus 162 ~~~~~~~~~ 170 (195)
+++.++++.
T Consensus 76 ~~~~~~l~~ 84 (114)
T cd07245 76 DAFRARLKA 84 (114)
T ss_pred HHHHHHHHH
Confidence 666665543
No 115
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=89.42 E-value=1.3 Score=28.98 Aligned_cols=52 Identities=12% Similarity=0.200 Sum_probs=38.2
Q ss_pred EEEEEeCCHHHHHHHHHh-CCCeEeccceecCCcceEEEEEECCCCCEEEEEecCCC
Q 029305 85 HISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVL 140 (195)
Q Consensus 85 Hiaf~v~dl~~~~~~l~~-~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~~ 140 (195)
|+.+.+.|+++..+-..+ .|.+....... . .....++.++ +..|+|....+.
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~-~--~~~~~~~~~~-~~~i~l~~~~~~ 53 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN-G--GAEFAVLGLG-GTRLELFEGDEP 53 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc-C--CEEEEEEecC-CceEEEecCCCC
Confidence 789999999999999987 89887765521 1 1245566655 899999986553
No 116
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=86.89 E-value=2.2 Score=31.19 Aligned_cols=57 Identities=7% Similarity=0.091 Sum_probs=35.3
Q ss_pred CCCceEEEEEeCCHHHHHHHHHh-CCCeEeccceecC--CcceEEEEEE-CCCCCEEEEEe
Q 029305 80 NPKDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEG--GINVDQLFFH-DPDGSMIEICN 136 (195)
Q Consensus 80 ~~g~~Hiaf~v~dl~~~~~~l~~-~gv~~~~~~~~~~--~~~~~~~~~~-DPdGn~iEi~~ 136 (195)
..++.|+++.|+|+++..+-..+ .|.++........ +......|+. ++++..+++..
T Consensus 7 ~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 67 (154)
T cd07237 7 DQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAE 67 (154)
T ss_pred CCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEc
Confidence 45789999999999999988876 7888754321110 0011233333 44556676644
No 117
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=85.11 E-value=9.2 Score=28.12 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=35.8
Q ss_pred CceEEEEEeCCHHHHHHHHHh-CCCeEeccceecCCcceEEEEEEC-CCCCEEEEEecC
Q 029305 82 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHD-PDGSMIEICNCD 138 (195)
Q Consensus 82 g~~Hiaf~v~dl~~~~~~l~~-~gv~~~~~~~~~~~~~~~~~~~~D-PdGn~iEi~~~~ 138 (195)
|+.|+++.|+|+++..+-..+ .|.++.... .+ ...++..+ .+|..|++....
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~---~~--~~~~~~~~~~~~~~l~l~~~~ 54 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEE---GD--RVRLEEGGGGPGAVVDVLEEP 54 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeee---CC--EEEEEecCCCCCCEEEEEeCC
Confidence 578999999999999998865 588876543 11 11222222 358899998853
No 118
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=84.84 E-value=9.8 Score=25.73 Aligned_cols=55 Identities=11% Similarity=0.181 Sum_probs=36.8
Q ss_pred ceEEEEEeCCHHHHHHHHHh-CCCeEeccceecCCcceEEEEEECCC---CCEEEEEecC
Q 029305 83 DNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPD---GSMIEICNCD 138 (195)
Q Consensus 83 ~~Hiaf~v~dl~~~~~~l~~-~gv~~~~~~~~~~~~~~~~~~~~DPd---Gn~iEi~~~~ 138 (195)
+.|+++.|+|+++..+-..+ .|.++........+ ....+++..++ +..+++....
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~ 59 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEG-KFTLVFLGYPDEDSEGVLELTYNW 59 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCC-ceEEEEecCCCCCCccEEEEEecC
Confidence 46999999999999999876 59887654322211 11334555554 5789987653
No 119
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=83.76 E-value=10 Score=26.11 Aligned_cols=52 Identities=12% Similarity=0.159 Sum_probs=36.7
Q ss_pred CceEEEEEeCCHHHHHHHHHhC----CCeEeccceecCCcceEEEEEECCCCCEEEEEecCC
Q 029305 82 KDNHISFQCENMAIVERRLKEM----KIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 139 (195)
Q Consensus 82 g~~Hiaf~v~dl~~~~~~l~~~----gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~ 139 (195)
++.|+.+.|+|+++..+-..+. |.++.... .. ...|+...++..+++.....
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~--~~----~~~~~~~~~~~~i~l~~~~~ 56 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEW--ED----GRSWRAGDGGTYLVLQQADG 56 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEee--cc----CceEEecCCceEEEEEeccc
Confidence 4789999999999998887764 88876543 11 13344435678899987554
No 120
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=82.98 E-value=1 Score=33.55 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=24.8
Q ss_pred cCccceEEEEcCCHHHHHHHHHhccCCe
Q 029305 11 LKSLNHISLVCRSVEASLDFYQNVLGFF 38 (195)
Q Consensus 11 i~~i~hv~l~v~dl~~s~~FY~~~LG~~ 38 (195)
.+++.|+.|.+++..+...||..+||++
T Consensus 40 ytr~~gm~l~~~~~fke~~Fsl~fL~~~ 67 (170)
T KOG2944|consen 40 YTRVNGMALLVPDDFKEAKFSLYFLGAE 67 (170)
T ss_pred hhhhccceeechhhhhHhhhHHHhhccc
Confidence 5678899999999999999999999986
No 121
>PRK11700 hypothetical protein; Provisional
Probab=82.39 E-value=18 Score=27.79 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=45.1
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeec-------CcEEEEeeeCCCCCCCCCCCCCCCCce
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNY-------GMGIHLLKSEEPDNLPKAGKNINPKDN 84 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~-------g~~~~ll~~~~~~~~~~~~~~~~~g~~ 84 (195)
-.++||.|+|++.+.+.+|-+..+..-..-........... ++.. +..+..++.+-+.. ......|.-
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGRPI~-l~~L~qPl~~~~w~I~cvELP~P~~----k~Yp~eGWE 112 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSENIINGRPIC-LFELDQPLQVGHWSIDCVELPYPGE----KRYPHEGWE 112 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEE-EEEcCCCceeCCcEEEEEEeCCCCC----CCCCCCCce
Confidence 46899999999999999999886654322211101111122 3322 23455555543321 125667899
Q ss_pred EEEEEeC
Q 029305 85 HISFQCE 91 (195)
Q Consensus 85 Hiaf~v~ 91 (195)
|+-+.++
T Consensus 113 HIElVlp 119 (187)
T PRK11700 113 HIELVLP 119 (187)
T ss_pred EEEEEec
Confidence 9999999
No 122
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=82.31 E-value=7.6 Score=26.50 Aligned_cols=55 Identities=11% Similarity=0.097 Sum_probs=37.0
Q ss_pred ceEEEEEeCCHHHHHHHHHh-CCCeEeccceecCCcceEEEEEECCCCCEEEEEecC
Q 029305 83 DNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 138 (195)
Q Consensus 83 ~~Hiaf~v~dl~~~~~~l~~-~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~ 138 (195)
+.|+++.|+|+++..+...+ .|...........+...+..++. .+|..++|+...
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~~~~ 56 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLG-LGNVQIELIEPL 56 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEE-cCCEEEEEEEEC
Confidence 36999999999999998876 78887654322101112344444 478889999753
No 123
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=82.23 E-value=13 Score=25.16 Aligned_cols=54 Identities=11% Similarity=0.174 Sum_probs=35.6
Q ss_pred ceEEEEEeCCHHHHHHHHHh-CCCeEeccce-ecCCcceEEEEEECCCCCEEEEEecC
Q 029305 83 DNHISFQCENMAIVERRLKE-MKIDYVKSRV-EEGGINVDQLFFHDPDGSMIEICNCD 138 (195)
Q Consensus 83 ~~Hiaf~v~dl~~~~~~l~~-~gv~~~~~~~-~~~~~~~~~~~~~DPdGn~iEi~~~~ 138 (195)
+.|+++.|+|+++..+-..+ .|.+...... +..+ ....|+.-.+|..+++++..
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~ 57 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKG--FESYFLSFDDGARLELMTRP 57 (125)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCC--ceEEEEecCCCcEEEEEcCc
Confidence 57999999999999987776 5877643211 1122 12334544577889999753
No 124
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=81.15 E-value=14 Score=24.88 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=38.8
Q ss_pred CceEEEEEeCCHHHHHHHHHh-CCCeEeccce-ecCCcceEEEEEECCCCCEEEEEecCC
Q 029305 82 KDNHISFQCENMAIVERRLKE-MKIDYVKSRV-EEGGINVDQLFFHDPDGSMIEICNCDV 139 (195)
Q Consensus 82 g~~Hiaf~v~dl~~~~~~l~~-~gv~~~~~~~-~~~~~~~~~~~~~DPdGn~iEi~~~~~ 139 (195)
|+.|+++.|.|+++..+-..+ .|.++..... ..........++.. .+..+++.....
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 59 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRI-GEGHIELFLNPS 59 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEES-TSSCEEEEEEES
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecc-cccceeeeeecc
Confidence 478999999999999998876 6999887664 12222223444444 445677777544
No 125
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=80.73 E-value=6.9 Score=28.52 Aligned_cols=27 Identities=7% Similarity=0.083 Sum_probs=22.3
Q ss_pred ceEEEEEeCCHHHHHHHHH-hCCCeEec
Q 029305 83 DNHISFQCENMAIVERRLK-EMKIDYVK 109 (195)
Q Consensus 83 ~~Hiaf~v~dl~~~~~~l~-~~gv~~~~ 109 (195)
+.|+++.|+|+++..+... ..|.++..
T Consensus 2 i~Hv~l~V~Dle~a~~FY~~~LG~~~~~ 29 (153)
T cd07257 2 LGHVVLEVPDFAASFDWYTETFGLKPSD 29 (153)
T ss_pred ccEEEEecCCHHHHHHHHHHhcCCeEEe
Confidence 5799999999999988775 47887654
No 126
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=80.01 E-value=21 Score=26.28 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=44.1
Q ss_pred cceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEeec-------CcEEEEeeeCCCCCCCCCCCCCCCCceEE
Q 029305 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFNY-------GMGIHLLKSEEPDNLPKAGKNINPKDNHI 86 (195)
Q Consensus 14 i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~-------g~~~~ll~~~~~~~~~~~~~~~~~g~~Hi 86 (195)
++||.|+|++.+.+.+|-+.++..-..-........... ++.. +..+..++..-+. .......|.-|+
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGRPI~-l~~L~qPl~~~~~~I~cvELP~P~----~k~Yp~eGWEHI 76 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGRPIA-LIKLEKPLQFAGWSISIVELPFPK----DKKYPQEGWEHI 76 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEE-EEEcCCCceeCCcEEEEEEeCCCC----CCCCCCCCceEE
Confidence 689999999999999999887754322211111111111 3322 2345555554332 112566789999
Q ss_pred EEEeC
Q 029305 87 SFQCE 91 (195)
Q Consensus 87 af~v~ 91 (195)
-+.++
T Consensus 77 E~Vlp 81 (149)
T cd07268 77 EIVIP 81 (149)
T ss_pred EEEec
Confidence 99998
No 127
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.22 E-value=5.9 Score=25.45 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=31.3
Q ss_pred HHHHHHHHHhCCCeEecccee-cCCcceEEEEEECCCCCEE
Q 029305 93 MAIVERRLKEMKIDYVKSRVE-EGGINVDQLFFHDPDGSMI 132 (195)
Q Consensus 93 l~~~~~~l~~~gv~~~~~~~~-~~~~~~~~~~~~DPdGn~i 132 (195)
+.++.+-|.+.|+.+..+... .++.....||+.|.+|+.+
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 667778888999999877643 3455678999999999866
No 128
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=78.14 E-value=19 Score=24.53 Aligned_cols=80 Identities=8% Similarity=0.007 Sum_probs=44.3
Q ss_pred ceEEEEEeCCHHHHHHHHHh----CCCeEeccceecCCcceEEEEEECC-CCCEEEEEecCCCCCCCCCCcchhhccccc
Q 029305 83 DNHISFQCENMAIVERRLKE----MKIDYVKSRVEEGGINVDQLFFHDP-DGSMIEICNCDVLPVVPLAGDAVRIRSCTS 157 (195)
Q Consensus 83 ~~Hiaf~v~dl~~~~~~l~~----~gv~~~~~~~~~~~~~~~~~~~~DP-dGn~iEi~~~~~~~~~p~~~~~~~~~~~~~ 157 (195)
+.|+++.|.|+++..+-.++ .|.+..... ..+ .+.+..+ .+..+.++........+......+..++.+
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~--~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~hi~f~v~~ 74 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED--GPG----AVGYGKGGGGPDFWVTKPFDGEPATAGNGTHVAFAAPS 74 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec--CCc----eeEeccCCCCceEEEeccccCCCCCCCCceEEEEECCC
Confidence 46999999999998887776 588765433 111 3445555 467788876432111111111234555523
Q ss_pred ccchhhhhhhh
Q 029305 158 TVNCNFHQQQI 168 (195)
Q Consensus 158 ~~~~~~~~~~~ 168 (195)
+-+++.+.+++
T Consensus 75 ~~~v~~~~~~~ 85 (123)
T cd07262 75 REAVDAFHAAA 85 (123)
T ss_pred HHHHHHHHHHH
Confidence 33355555543
No 129
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=77.61 E-value=9.6 Score=29.20 Aligned_cols=75 Identities=21% Similarity=0.244 Sum_probs=39.8
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEe-------ecCcEEEEeeeCCCCCCCCCCCCCCCCce
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLF-------NYGMGIHLLKSEEPDNLPKAGKNINPKDN 84 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~-------~~g~~~~ll~~~~~~~~~~~~~~~~~g~~ 84 (195)
-.++||.++|++.+.+.+|-+..+..-..-........... ++ -.+-.+..++.+-+.. + .....|.-
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~-l~~L~qPL~~~~~~I~~vELP~P~~---K-~Yp~eGWE 107 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPIC-LFKLNQPLQFGGWSIDCVELPYPKD---K-RYPQEGWE 107 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEE-EEEEEEEEEETTEEEEEEEEE---S---S---SS-EEE
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEE-EEEcCCchhcCCeeEEEEEeCCCCC---C-CCCCCCce
Confidence 45899999999999999999987766432211101001111 22 1234566666654322 1 25667899
Q ss_pred EEEEEeC
Q 029305 85 HISFQCE 91 (195)
Q Consensus 85 Hiaf~v~ 91 (195)
|+-|.++
T Consensus 108 HIE~Vip 114 (185)
T PF06185_consen 108 HIEFVIP 114 (185)
T ss_dssp EEEEE--
T ss_pred EEEEEec
Confidence 9999998
No 130
>PLN02367 lactoylglutathione lyase
Probab=76.67 E-value=14 Score=29.52 Aligned_cols=54 Identities=15% Similarity=0.327 Sum_probs=36.4
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEee--cCcEEEEeeeC
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFN--YGMGIHLLKSE 67 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~--~g~~~~ll~~~ 67 (195)
.+++||.+.|.|++++.+-.++ .|.++...+..... ....++. .|..+++++..
T Consensus 168 ~G~~HIaf~VdDVdaa~erL~a-~Gv~~v~~P~~g~~-~riaFIkDPDGn~IEL~e~~ 223 (233)
T PLN02367 168 RGFGHIGITVDDVYKACERFEE-LGVEFVKKPNDGKM-KGIAFIKDPDGYWIEIFDLK 223 (233)
T ss_pred CCceEEEEEcCCHHHHHHHHHH-CCCEEEeCCccCCc-eEEEEEECCCCCEEEEEecc
Confidence 4799999999999999999987 99998865432111 1111222 34567776654
No 131
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=75.85 E-value=15 Score=25.88 Aligned_cols=56 Identities=9% Similarity=0.014 Sum_probs=37.9
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccEEEee--cCcEEEEeeeCC
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGACRLFN--YGMGIHLLKSEE 68 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~--~g~~~~ll~~~~ 68 (195)
.++.|+.+.|.|++++.+=.++ .|.+++..+..........++. .|..+++++...
T Consensus 68 ~g~~hia~~V~Dvda~~~~l~~-~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~~ 125 (136)
T cd08342 68 DGVCDVAFRVDDAAAAYERAVA-RGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRKG 125 (136)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-cCCeEccCceecCCeEEEEEEeccCCcEEEEEecCC
Confidence 4678999999999999999987 9999987665422222221232 345677776543
No 132
>PRK11478 putative lyase; Provisional
Probab=75.19 E-value=21 Score=24.45 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=24.8
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEee
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIR 41 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~ 41 (195)
.++.|+.+.|.|++++.+-..+ .|.++..
T Consensus 74 ~g~~hi~f~v~d~~~~~~~l~~-~G~~~~~ 102 (129)
T PRK11478 74 CGLRHLAFSVDDIDAAVAHLES-HNVKCEA 102 (129)
T ss_pred CceeEEEEEeCCHHHHHHHHHH-cCCeeec
Confidence 4578999999999999998877 8988764
No 133
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=74.92 E-value=17 Score=27.72 Aligned_cols=31 Identities=19% Similarity=0.485 Sum_probs=27.1
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeecC
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRP 43 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~ 43 (195)
.+++|+.+.|.|++++.+.+.+ .|+++...+
T Consensus 120 ~G~~Hlaf~V~Dvd~~~~~L~~-~Gv~v~~~p 150 (185)
T PLN03042 120 RGFGHIGITVDDVYKACERFEK-LGVEFVKKP 150 (185)
T ss_pred CCccEEEEEcCCHHHHHHHHHH-CCCeEEeCC
Confidence 3789999999999999999988 999887543
No 134
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=74.00 E-value=23 Score=23.48 Aligned_cols=50 Identities=10% Similarity=0.134 Sum_probs=33.5
Q ss_pred EEEEEeCCHHHHHHHHHh-CCCeEeccceecCCcceEEEEEECCCC--CEEEEEe
Q 029305 85 HISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDG--SMIEICN 136 (195)
Q Consensus 85 Hiaf~v~dl~~~~~~l~~-~gv~~~~~~~~~~~~~~~~~~~~DPdG--n~iEi~~ 136 (195)
|+++.|.|+++..+-..+ .|.++........+ ...+.+.++++ ..+++..
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~ 53 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGG--FRWVTVAPPGSPETSLVLAP 53 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCC--cEEEEEeCCCCCeeEEEEeC
Confidence 789999999999988876 79888765421122 24556666664 3455543
No 135
>PRK10291 glyoxalase I; Provisional
Probab=73.66 E-value=22 Score=24.60 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=35.1
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeecCCCCCCCccE-EEee--cCcEEEEeeeC
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPGSFDFDGAC-RLFN--YGMGIHLLKSE 67 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~-~~~~--~g~~~~ll~~~ 67 (195)
.+++|+.+.|.|++++.+-.++ .|.++............+ .++. .|..+++.+..
T Consensus 64 ~~~~hlaf~V~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~ 121 (129)
T PRK10291 64 TAYGHIALSVDNAAEACEKIRQ-NGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEK 121 (129)
T ss_pred CCeeEEEEEeCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEEcc
Confidence 3688999999999999999877 898876532211111111 1222 34667777655
No 136
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=73.27 E-value=16 Score=24.97 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=25.2
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeec
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRR 42 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~ 42 (195)
.++.|+.+.|.|++++.+..+. .|.++...
T Consensus 71 ~g~~~i~~~v~di~~~~~~l~~-~G~~~~~~ 100 (128)
T TIGR03081 71 GGIHHIAIEVDDIEAALETLKE-KGVRLIDE 100 (128)
T ss_pred CceEEEEEEcCCHHHHHHHHHH-CCCcccCC
Confidence 4577999999999999999877 78887653
No 137
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=69.31 E-value=23 Score=24.82 Aligned_cols=32 Identities=9% Similarity=0.163 Sum_probs=26.0
Q ss_pred CccceEEEEcCCHHHHHHHHHhc--cCCeEeecC
Q 029305 12 KSLNHISLVCRSVEASLDFYQNV--LGFFPIRRP 43 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~--LG~~~~~~~ 43 (195)
.+++|+++.|.|++...+++..+ .|.++....
T Consensus 61 ~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~~~~ 94 (134)
T cd08360 61 AGFHHAAFEVGDIDEVMLGGNHMLRAGYQTGWGP 94 (134)
T ss_pred CcceEEEEEeCCHHHHHHHHHHHHHcCCccccCC
Confidence 67999999999999999887776 677765433
No 138
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.33 E-value=16 Score=23.65 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCeEeccceec-CCcceEEEEEECCCCCEE
Q 029305 93 MAIVERRLKEMKIDYVKSRVEE-GGINVDQLFFHDPDGSMI 132 (195)
Q Consensus 93 l~~~~~~l~~~gv~~~~~~~~~-~~~~~~~~~~~DPdGn~i 132 (195)
+.++...|.+.|+.+..+...- +......||+.|.+|..+
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl 55 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTL 55 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCcc
Confidence 5567778889999998776443 333568999999999855
No 139
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=67.52 E-value=20 Score=24.93 Aligned_cols=52 Identities=12% Similarity=0.143 Sum_probs=32.4
Q ss_pred eEEEEEeCCHHHHHHHHHh-CCCeEeccceecCCcceEEEEEECC-CCCEEEEEec
Q 029305 84 NHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDP-DGSMIEICNC 137 (195)
Q Consensus 84 ~Hiaf~v~dl~~~~~~l~~-~gv~~~~~~~~~~~~~~~~~~~~DP-dGn~iEi~~~ 137 (195)
.|+++.|.|+++..+-..+ .|.++.......+. ....|+... .+..++++..
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~ 54 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDPGV--DAAAFLRCDEDHHDLALFPG 54 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccCCc--eeEEEEEcCCCcceEEEEcC
Confidence 4899999999999998875 79887543211111 123444443 3446777653
No 140
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=67.50 E-value=36 Score=23.06 Aligned_cols=51 Identities=0% Similarity=0.068 Sum_probs=36.3
Q ss_pred CceEEEEEeCCHHHHHHHHHh-CCCeEeccceecCCcceEEEEEECCC-CCEEEEEecCC
Q 029305 82 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPD-GSMIEICNCDV 139 (195)
Q Consensus 82 g~~Hiaf~v~dl~~~~~~l~~-~gv~~~~~~~~~~~~~~~~~~~~DPd-Gn~iEi~~~~~ 139 (195)
++.|+.+.|+|+++..+-..+ .|.++.... . ..+++..++ +..+.+.....
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~----~~~~l~~~~~~~~l~l~~~~~ 54 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERT---D----STAVLGTGGKRPLLVLEEDPD 54 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcC---C----CEEEEecCCCeEEEEEEeCCC
Confidence 468999999999999998875 698886552 1 234555544 56777777543
No 141
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=62.98 E-value=3.4 Score=23.91 Aligned_cols=27 Identities=11% Similarity=0.322 Sum_probs=22.4
Q ss_pred cccCccceEEEEcCCHHHHHHHHHhcc
Q 029305 9 LCLKSLNHISLVCRSVEASLDFYQNVL 35 (195)
Q Consensus 9 ~~i~~i~hv~l~v~dl~~s~~FY~~~L 35 (195)
..+..++...+.++++++..+||+..|
T Consensus 7 ~gigp~De~giP~~~vd~~kDWYktMF 33 (47)
T PF02208_consen 7 EGIGPVDESGIPLSNVDRPKDWYKTMF 33 (47)
T ss_pred CCcCccccCCCccccccchhHHHHHHH
Confidence 445667778888899999999999866
No 142
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=60.46 E-value=53 Score=22.63 Aligned_cols=52 Identities=10% Similarity=0.190 Sum_probs=35.8
Q ss_pred ceEEEEEeCCHHHHHHHHHh-CCCeEeccceecCCcceEEEEEECC--CCCEEEEEecCC
Q 029305 83 DNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDP--DGSMIEICNCDV 139 (195)
Q Consensus 83 ~~Hiaf~v~dl~~~~~~l~~-~gv~~~~~~~~~~~~~~~~~~~~DP--dGn~iEi~~~~~ 139 (195)
+.|+.+.|+|+++..+-..+ .|.++.... ... ...|+..+ .+..++++....
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~--~~~---~~~~~~~~~~~~~~l~l~~~~~ 56 (134)
T cd08348 2 LSHVVLYVRDLEAMVRFYRDVLGFTVTDRG--PLG---GLVFLSRDPDEHHQIALITGRP 56 (134)
T ss_pred eeEEEEEecCHHHHHHHHHHhcCCEEEeec--cCC---cEEEEEecCCCceEEEEEecCC
Confidence 67999999999999998876 798876543 111 24455543 356788876543
No 143
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=58.70 E-value=26 Score=29.11 Aligned_cols=30 Identities=23% Similarity=0.137 Sum_probs=23.0
Q ss_pred CCCCceEEEEEe------CCHHHHHHHHHhCCCeEe
Q 029305 79 INPKDNHISFQC------ENMAIVERRLKEMKIDYV 108 (195)
Q Consensus 79 ~~~g~~Hiaf~v------~dl~~~~~~l~~~gv~~~ 108 (195)
.++.++|+.+.| .|++++.+.|+++|+++.
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 456789999999 899999999999999987
No 144
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=56.75 E-value=59 Score=23.23 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=26.4
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeecC
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRP 43 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~ 43 (195)
.++.|+.+.|.|++++.+...+ .|.++....
T Consensus 85 ~g~~hi~f~v~dld~~~~~l~~-~G~~~~~~~ 115 (150)
T TIGR00068 85 NGFGHIAIGVDDVYKACERVRA-LGGNVVREP 115 (150)
T ss_pred CceeEEEEecCCHHHHHHHHHH-cCCccccCC
Confidence 3678999999999999999988 998876544
No 145
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.06 E-value=28 Score=20.68 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=22.6
Q ss_pred CceEEEEEeCCHHHHHHHHHhCCCeE
Q 029305 82 KDNHISFQCENMAIVERRLKEMKIDY 107 (195)
Q Consensus 82 g~~Hiaf~v~dl~~~~~~l~~~gv~~ 107 (195)
+...+.|.+++.+.+.+.|+++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 45678999999999999999999875
No 146
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=55.88 E-value=71 Score=22.68 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=36.3
Q ss_pred CceEEEEEeCCHHHHHHHHH-hCCCeEeccceecCC---------cceEE-EEEE---CCCCCEEEEEecCC
Q 029305 82 KDNHISFQCENMAIVERRLK-EMKIDYVKSRVEEGG---------INVDQ-LFFH---DPDGSMIEICNCDV 139 (195)
Q Consensus 82 g~~Hiaf~v~dl~~~~~~l~-~~gv~~~~~~~~~~~---------~~~~~-~~~~---DPdGn~iEi~~~~~ 139 (195)
.+.|++++|.|+++..+--. ..|.++......+.+ .+... +|+. +..+..+|++....
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~ 73 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYG 73 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCC
Confidence 36899999999999998775 479987553311110 01112 2332 34667899997443
No 147
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=55.76 E-value=49 Score=22.14 Aligned_cols=28 Identities=11% Similarity=0.325 Sum_probs=24.1
Q ss_pred CceEEEEEeCCHHHHHHHHHhCCCeEec
Q 029305 82 KDNHISFQCENMAIVERRLKEMKIDYVK 109 (195)
Q Consensus 82 g~~Hiaf~v~dl~~~~~~l~~~gv~~~~ 109 (195)
++.|+++.|.|+++..+-....|.++..
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~~lG~~~~~ 29 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYEAFGLDVRE 29 (112)
T ss_pred ceeEEEEecCCHHHHHHHHHHhCCcEEe
Confidence 5789999999999999988778888754
No 148
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=55.76 E-value=67 Score=22.34 Aligned_cols=83 Identities=14% Similarity=0.087 Sum_probs=44.5
Q ss_pred CCceEEEEEeCCHHHHHHHHHh-CCCeEeccceecCCc-ceEEEEEECCCCCEEEEEecCCCCCCCCCCcchhhcccccc
Q 029305 81 PKDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGI-NVDQLFFHDPDGSMIEICNCDVLPVVPLAGDAVRIRSCTST 158 (195)
Q Consensus 81 ~g~~Hiaf~v~dl~~~~~~l~~-~gv~~~~~~~~~~~~-~~~~~~~~DPdGn~iEi~~~~~~~~~p~~~~~~~~~~~~~~ 158 (195)
.++.|+++.|+|+++..+-..+ .|.+........... ....++. -.|..+++....+ +.. ..--.+..++ ..
T Consensus 3 ~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~~~~-~~~--~~~~Hiaf~v-~~ 76 (131)
T cd08364 3 EGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFL--IGGLWIAIMEGDS-LQE--RTYNHIAFKI-SD 76 (131)
T ss_pred ccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEE--cCCeEEEEecCCC-CCC--CCceEEEEEc-CH
Confidence 3689999999999999988876 687654432111100 1112222 2367888875332 110 0001244444 32
Q ss_pred cchhhhhhhhh
Q 029305 159 VNCNFHQQQIQ 169 (195)
Q Consensus 159 ~~~~~~~~~~~ 169 (195)
-+++.+.++++
T Consensus 77 ~~ld~~~~~l~ 87 (131)
T cd08364 77 SDVDEYTERIK 87 (131)
T ss_pred HHHHHHHHHHH
Confidence 35666666554
No 149
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=54.50 E-value=64 Score=21.72 Aligned_cols=49 Identities=10% Similarity=0.084 Sum_probs=31.9
Q ss_pred ceEEEEEeCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEe
Q 029305 83 DNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 136 (195)
Q Consensus 83 ~~Hiaf~v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~ 136 (195)
+.|+++.|+|+++..+--...|.++.... ... ..+.+..++|..+.+..
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~LGf~~~~~~---~~~--~~~~~~~~~~~~l~l~~ 49 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRRLGFDFPEEA---DDE--PHVEAVLPGGVRLAWDT 49 (122)
T ss_pred CceEEEEeccHHHHHHHHHHhCceecCCc---CCC--CcEEEEeCCCEEEEEEc
Confidence 36899999999999988877888764332 110 13344556666665543
No 150
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=54.08 E-value=64 Score=21.57 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=23.0
Q ss_pred eEEEEcCCHHHHHHHHHhccCCeEeecC
Q 029305 16 HISLVCRSVEASLDFYQNVLGFFPIRRP 43 (195)
Q Consensus 16 hv~l~v~dl~~s~~FY~~~LG~~~~~~~ 43 (195)
|+.+.|.|+++..+...+ .|.++....
T Consensus 69 ~~~~~v~did~~~~~l~~-~G~~~~~~~ 95 (119)
T cd08359 69 ILNFEVDDVDAEYERLKA-EGLPIVLPL 95 (119)
T ss_pred EEEEEECCHHHHHHHHHh-cCCCeeecc
Confidence 899999999999999988 888766543
No 151
>PRK03094 hypothetical protein; Provisional
Probab=50.62 E-value=59 Score=21.36 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=35.0
Q ss_pred EeC-CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEe
Q 029305 89 QCE-NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICN 136 (195)
Q Consensus 89 ~v~-dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~ 136 (195)
.|+ +|..+.+.|+++|+++..-..+....+..++.+..-|.|..-+-.
T Consensus 5 aVE~~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mgi~d 53 (80)
T PRK03094 5 GVEQSLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGIAD 53 (80)
T ss_pred EeecCcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceecccc
Confidence 455 799999999999999976542221223478888898988888654
No 152
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=50.36 E-value=86 Score=21.99 Aligned_cols=80 Identities=14% Similarity=0.164 Sum_probs=45.7
Q ss_pred CceEEEEEeCCHHHHHHHHHh-CCCeEeccceecCCcceEEEEEECCCCCEEEEEecCCCCCCCC-CCcchhhccccccc
Q 029305 82 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVVPL-AGDAVRIRSCTSTV 159 (195)
Q Consensus 82 g~~Hiaf~v~dl~~~~~~l~~-~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~~~~~p~-~~~~~~~~~~~~~~ 159 (195)
++.|+++.|+|+++..+-..+ .|.++.... . ...++.. +|..+.+......+.... ..-..+...+ ..-
T Consensus 4 ~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~----~---~~~~~~~-~g~~l~l~~~~~~~~~~~~~~~~hiaf~v-~~~ 74 (139)
T PRK04101 4 GINHICFSVSNLEKSIEFYEKVLGAKLLVKG----R---KTAYFDL-NGLWIALNEEKDIPRNEIHQSYTHIAFSI-EEE 74 (139)
T ss_pred cEEEEEEEecCHHHHHHHHHhccCCEEEeec----C---eeEEEec-CCeEEEeeccCCCCCccCCCCeeEEEEEe-cHH
Confidence 578999999999999998864 688775431 1 2445544 577777765432221111 0111233333 333
Q ss_pred chhhhhhhhhh
Q 029305 160 NCNFHQQQIQQ 170 (195)
Q Consensus 160 ~~~~~~~~~~~ 170 (195)
|++...+++..
T Consensus 75 dv~~~~~~l~~ 85 (139)
T PRK04101 75 DFDHWYQRLKE 85 (139)
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 153
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=47.62 E-value=1.1e+02 Score=22.43 Aligned_cols=30 Identities=7% Similarity=0.201 Sum_probs=24.9
Q ss_pred CCceEEEEEeCCHHHHHHHHHh-CCCeEecc
Q 029305 81 PKDNHISFQCENMAIVERRLKE-MKIDYVKS 110 (195)
Q Consensus 81 ~g~~Hiaf~v~dl~~~~~~l~~-~gv~~~~~ 110 (195)
.++.|+.+.|+|+++..+-..+ .|.++...
T Consensus 5 ~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~ 35 (166)
T cd09014 5 RRLDHVNLLASDVDANRDFMEEVLGFRLREQ 35 (166)
T ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCEEEEE
Confidence 3578999999999999998874 79887544
No 154
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=46.48 E-value=84 Score=20.75 Aligned_cols=32 Identities=13% Similarity=0.004 Sum_probs=26.1
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeecCC
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPG 44 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~ 44 (195)
....|+.+.|.|+++..+-... .|.++...+.
T Consensus 60 ~~~~~~~f~v~di~~~~~~l~~-~g~~~~~~~~ 91 (114)
T cd07247 60 PPGWLVYFAVDDVDAAAARVEA-AGGKVLVPPT 91 (114)
T ss_pred CCeEEEEEEeCCHHHHHHHHHH-CCCEEEeCCc
Confidence 3456899999999999998887 8998876544
No 155
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=45.84 E-value=42 Score=23.34 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEE
Q 029305 91 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMI 132 (195)
Q Consensus 91 ~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~i 132 (195)
.+++.+.+.|.+.|+++..... +|...+.++|.--+|..+
T Consensus 64 rNv~~a~~~L~~~gi~I~a~dv--GG~~~R~v~f~~~tG~v~ 103 (114)
T PF03975_consen 64 RNVEAARELLAEEGIPIVAEDV--GGNFGRKVRFDPATGEVW 103 (114)
T ss_dssp HHHHHHHHHHHHTT--EEEEEE---SSS-EEEEEETTTTEEE
T ss_pred HHHHHHHHHHHHCCCcEEEeeC--CCCCCcEEEEEcCCCEEE
Confidence 3899999999999999987753 555668888866666543
No 156
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.81 E-value=60 Score=19.76 Aligned_cols=29 Identities=10% Similarity=0.196 Sum_probs=22.2
Q ss_pred CceEEEEEeC--CHHHHHHHHHhCCCeEecc
Q 029305 82 KDNHISFQCE--NMAIVERRLKEMKIDYVKS 110 (195)
Q Consensus 82 g~~Hiaf~v~--dl~~~~~~l~~~gv~~~~~ 110 (195)
+...+.|.++ +.+.+.+.|++.|+++..+
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 3445666665 8889999999999988653
No 157
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=44.79 E-value=81 Score=22.54 Aligned_cols=33 Identities=6% Similarity=0.141 Sum_probs=23.0
Q ss_pred cCccceEEEEcCCHHHHHHHHHhc--cCCeEeecC
Q 029305 11 LKSLNHISLVCRSVEASLDFYQNV--LGFFPIRRP 43 (195)
Q Consensus 11 i~~i~hv~l~v~dl~~s~~FY~~~--LG~~~~~~~ 43 (195)
-.+++|+++.|.|++...++++.+ .|.++...+
T Consensus 54 ~~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p 88 (141)
T cd07258 54 SSHFHHVNFMVTDIDDIGKALYRIKAHDVKVVFGP 88 (141)
T ss_pred CCceEEEEEECCCHHHHHHHHHHHHHCCCcEEeCC
Confidence 367999999999877655555543 677765443
No 158
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.81 E-value=19 Score=28.44 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHhccCCeEeecCC
Q 029305 22 RSVEASLDFYQNVLGFFPIRRPG 44 (195)
Q Consensus 22 ~dl~~s~~FY~~~LG~~~~~~~~ 44 (195)
.|++++..||.+.||+++...-+
T Consensus 145 a~~~e~a~wy~dyLGleie~~hg 167 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAGHG 167 (246)
T ss_pred hccHHHHHHHHHhcCceeeeccC
Confidence 47788899999999999986543
No 159
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=43.24 E-value=1.2e+02 Score=23.60 Aligned_cols=82 Identities=16% Similarity=0.134 Sum_probs=51.7
Q ss_pred EEEEe--CCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCCCCCCCCCCcchhhcccccccchhh
Q 029305 86 ISFQC--ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPVVPLAGDAVRIRSCTSTVNCNF 163 (195)
Q Consensus 86 iaf~v--~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 163 (195)
+-+.| ++++.+.+.|.+.|+...... .. ...|...+.|..||+-.....+. .. . .....+.
T Consensus 97 iDlLV~~~d~~~a~~~L~~~Gy~~~~~~--~~----~~~~~~~~~~~~idlH~~l~~~~---~~-------~-~~~~~~~ 159 (249)
T PF14907_consen 97 IDLLVPPEDLERAVELLEELGYRIESPS--EH----HWVYSHEPKGISIDLHWRLFFPW---NP-------F-SNIDFDE 159 (249)
T ss_pred eEEEEeCCcHHHHHHHHHHcCCEeccCC--Cc----ceEEEecCCCEEEEEEecCCCCc---cc-------c-chhhHHH
Confidence 56666 499999999999999876542 11 34455558899999988633111 11 1 2344556
Q ss_pred hhhhhhhcCCCCCCCcccccc
Q 029305 164 HQQQIQQEPQINPQSCLSDSI 184 (195)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~ 184 (195)
++...+.+..++...+..++.
T Consensus 160 ~~~~~~~~~~~~g~~~~~ls~ 180 (249)
T PF14907_consen 160 LWWRRARPIEIGGYEVPVLSP 180 (249)
T ss_pred HHHhcCeeeeECCeeecccCH
Confidence 666655566666666665553
No 160
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=41.44 E-value=1e+02 Score=20.37 Aligned_cols=51 Identities=10% Similarity=0.149 Sum_probs=34.4
Q ss_pred CceEEEEEeCCHHHHHHHHHh-CCCeEeccceecCCcceEEEEEECCCCCEEEEEecC
Q 029305 82 KDNHISFQCENMAIVERRLKE-MKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCD 138 (195)
Q Consensus 82 g~~Hiaf~v~dl~~~~~~l~~-~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~ 138 (195)
++.|+.+.|+|+++..+-..+ .|.++...... .+ ...+.- ++..+++....
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~-~~----~~~~~~-~~~~~~l~~~~ 54 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRFGEE-VG----RKALRF-GSQKINLHPVG 54 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeeccccc-CC----ceEEEe-CCEEEEEecCC
Confidence 578999999999999998887 69887655411 11 222332 23678887643
No 161
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=41.00 E-value=85 Score=20.59 Aligned_cols=48 Identities=25% Similarity=0.311 Sum_probs=34.4
Q ss_pred EEeC-CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEE
Q 029305 88 FQCE-NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 135 (195)
Q Consensus 88 f~v~-dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~ 135 (195)
+.|+ +|..+.+.|++.|+++.........-+..++.+..-|.|..-+-
T Consensus 4 IAVE~~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~~ 52 (80)
T PF03698_consen 4 IAVEEGLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGIQ 52 (80)
T ss_pred EEecCCchHHHHHHHHCCCEEEecCCccccCCcCEEEEECCCccccccc
Confidence 3455 79999999999999998765333122347888888888876554
No 162
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=40.70 E-value=54 Score=24.55 Aligned_cols=39 Identities=28% Similarity=0.485 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCE
Q 029305 91 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSM 131 (195)
Q Consensus 91 ~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~ 131 (195)
.|++.+.+.|+++|+++.... -+|...+.++|.--+|..
T Consensus 112 rNv~~a~~~L~~~gI~i~a~d--vGG~~gR~i~f~~~tG~v 150 (162)
T PRK13490 112 RNGKAVKKKLKELSIPILAED--IGGNKGRTMIFDTSDGKV 150 (162)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--CCCCCCcEEEEECCCCEE
Confidence 389999999999999998765 355566888886666654
No 163
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=40.64 E-value=54 Score=24.47 Aligned_cols=39 Identities=23% Similarity=0.443 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCE
Q 029305 91 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSM 131 (195)
Q Consensus 91 ~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~ 131 (195)
.|++.+.+.|+++|+++.... -+|...+.++|.--+|..
T Consensus 105 rNi~~a~~~L~~~gI~i~a~d--vGG~~gR~i~f~~~tG~v 143 (159)
T PRK13495 105 RNVEAVKKHLKDFGIKLVAED--TGGNRARSIEYNIETGKL 143 (159)
T ss_pred HHHHHHHHHHHHcCCcEEEEe--CCCCCCcEEEEECCCCEE
Confidence 389999999999999998765 355566888886666654
No 164
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=38.49 E-value=61 Score=24.39 Aligned_cols=41 Identities=10% Similarity=0.098 Sum_probs=31.0
Q ss_pred EeCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCE
Q 029305 89 QCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSM 131 (195)
Q Consensus 89 ~v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~ 131 (195)
.-.+++.+.+.|.+.|+++.... -+|..++.++|.--+|..
T Consensus 113 G~rNi~~a~~~L~~~gi~i~a~D--vGG~~gR~i~f~~~tG~v 153 (167)
T PRK13498 113 ADKNIHAALALAEQNGLHLKAQD--LGSTGHRSIIFDLWNGNV 153 (167)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEe--CCCCCCcEEEEECCCCEE
Confidence 33489999999999999998765 355556888886666654
No 165
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=38.32 E-value=63 Score=24.27 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCE
Q 029305 91 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSM 131 (195)
Q Consensus 91 ~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~ 131 (195)
.+++.+.+.|.+.|+++.... -+|..++.++|..-+|..
T Consensus 114 rNv~~a~~~L~~~gI~i~a~D--vGG~~gR~i~f~~~tG~v 152 (163)
T PRK13494 114 ENSEFAVNTLNKYGIPILAKD--FDQSKSRKIFVFPENFKV 152 (163)
T ss_pred HHHHHHHHHHHHcCCcEEEEe--CCCCCCcEEEEECCCCEE
Confidence 389999999999999998765 355566888886666654
No 166
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=38.10 E-value=1.2e+02 Score=21.51 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=23.9
Q ss_pred CceEEEEEeCCHHHHHHHHHh-CCCeEecc
Q 029305 82 KDNHISFQCENMAIVERRLKE-MKIDYVKS 110 (195)
Q Consensus 82 g~~Hiaf~v~dl~~~~~~l~~-~gv~~~~~ 110 (195)
++.|+++.|.|+++..+-..+ .|.++...
T Consensus 6 ~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~ 35 (143)
T cd07243 6 RLDHCLLTGEDIAETTRFFTDVLDFYLAER 35 (143)
T ss_pred eeCEEEEecCCHHHHHHHHHHhcCCEEEEE
Confidence 578999999999999988765 79876544
No 167
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=37.22 E-value=1.6e+02 Score=21.34 Aligned_cols=28 Identities=4% Similarity=0.156 Sum_probs=23.5
Q ss_pred CceEEEEEeCCHHHHHHHHHh-CCCeEec
Q 029305 82 KDNHISFQCENMAIVERRLKE-MKIDYVK 109 (195)
Q Consensus 82 g~~Hiaf~v~dl~~~~~~l~~-~gv~~~~ 109 (195)
++.|+++.|+|+++..+-..+ .|.++..
T Consensus 3 ~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~ 31 (161)
T cd07256 3 RLDHFNLRVPDVDAGLAYYRDELGFRVSE 31 (161)
T ss_pred eEEEEEEecCCHHHHHHHHHhccCCEEEE
Confidence 578999999999999988876 7887653
No 168
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=35.94 E-value=73 Score=23.72 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCE
Q 029305 91 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSM 131 (195)
Q Consensus 91 ~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~ 131 (195)
.|++.+.+.|+++|+++.... -+|...+.++|.--+|..
T Consensus 107 rNi~~a~~~L~~~gi~i~a~d--vGG~~gR~i~f~~~tG~v 145 (157)
T PRK13488 107 RNIESAKETLKKLGIRIVAED--VGGDYGRTVKFDLKTGKV 145 (157)
T ss_pred HHHHHHHHHHHHCCCcEEEEE--cCCCCCcEEEEECCCCEE
Confidence 489999999999999998765 355556888886666654
No 169
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=35.82 E-value=86 Score=23.53 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=32.1
Q ss_pred EEeCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEE
Q 029305 88 FQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMI 132 (195)
Q Consensus 88 f~v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~i 132 (195)
+.-.+.+.+.+.|++.|+++.... -++...+.++|..-+|..+
T Consensus 111 IG~rNv~~~~~~L~~~~IpilaeD--~Gg~~gR~i~F~p~tG~v~ 153 (164)
T COG1871 111 IGERNVEFAKEFLKDEGIPILAED--TGGDSGRTIEFNPSTGRVR 153 (164)
T ss_pred hhhHHHHHHHHHHHHcCCcEEEhh--hCCCCCcEEEEecCCCcEE
Confidence 333489999999999999998765 2444558888876677554
No 170
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=35.51 E-value=72 Score=24.82 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=31.7
Q ss_pred CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEE
Q 029305 92 NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIE 133 (195)
Q Consensus 92 dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iE 133 (195)
|++.+.+.|+++|+++.... -+|..++.++|.--+|..+-
T Consensus 116 Nie~a~~~L~~~GI~ivaeD--vGG~~gRkI~f~~~tG~v~v 155 (199)
T PRK13491 116 NAAFARRYLRDEGIRCTAHS--LGGNRARRIRFWPKTGRVQQ 155 (199)
T ss_pred HHHHHHHHHHHcCCcEEEEe--CCCCCCcEEEEECCCCEEEE
Confidence 89999999999999998765 35556688888777776643
No 171
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=34.80 E-value=77 Score=24.29 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=30.5
Q ss_pred CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCE
Q 029305 92 NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSM 131 (195)
Q Consensus 92 dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~ 131 (195)
|++.+.+.|.+.|+++.... -+|..++.++|..-+|..
T Consensus 113 Ni~~a~~~L~~~gI~i~a~D--vGG~~gR~v~f~~~tG~v 150 (184)
T PRK13497 113 NAAFAMQFLRDEGIPVVGSS--TGGEHGRKLEYWPVSGRA 150 (184)
T ss_pred HHHHHHHHHHHcCCcEEEEe--CCCCCCcEEEEECCCCeE
Confidence 89999999999999998765 355566888887767765
No 172
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.72 E-value=1.2e+02 Score=19.17 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCeEecccee--cCCcceEEEEEECCCCC
Q 029305 93 MAIVERRLKEMKIDYVKSRVE--EGGINVDQLFFHDPDGS 130 (195)
Q Consensus 93 l~~~~~~l~~~gv~~~~~~~~--~~~~~~~~~~~~DPdGn 130 (195)
+..+...|.++|+.+..+... .++.....||+.|++|.
T Consensus 14 fa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~ 53 (76)
T cd04927 14 LHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL 53 (76)
T ss_pred HHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC
Confidence 566777888999998876533 34555678888888776
No 173
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.32 E-value=1.1e+02 Score=19.69 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCCeEecccee--c-CCcceEEEEEECCCCCE
Q 029305 93 MAIVERRLKEMKIDYVKSRVE--E-GGINVDQLFFHDPDGSM 131 (195)
Q Consensus 93 l~~~~~~l~~~gv~~~~~~~~--~-~~~~~~~~~~~DPdGn~ 131 (195)
+.++.+-+.+.|+.+..+... - +......||+ |.+|..
T Consensus 14 L~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~k 54 (75)
T cd04896 14 LYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKK 54 (75)
T ss_pred HHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCc
Confidence 556677888899999877655 3 3335577888 877764
No 174
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=33.61 E-value=1.5e+02 Score=19.82 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=23.1
Q ss_pred ceEEEEcCCHHHHHHHHHhccCCeEeecC
Q 029305 15 NHISLVCRSVEASLDFYQNVLGFFPIRRP 43 (195)
Q Consensus 15 ~hv~l~v~dl~~s~~FY~~~LG~~~~~~~ 43 (195)
.++.+.|.|++++.+...+ .|.++....
T Consensus 73 ~~~~~~v~di~~~~~~l~~-~G~~~~~~~ 100 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVE-AGAVLVSEP 100 (125)
T ss_pred EEEEEEcCCHHHHHHHHHH-cCCEeccCC
Confidence 3789999999999998877 788876543
No 175
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.35 E-value=91 Score=20.17 Aligned_cols=28 Identities=18% Similarity=0.180 Sum_probs=23.0
Q ss_pred ceEEEEEeCC----HHHHHHHHHhCCCeEecc
Q 029305 83 DNHISFQCEN----MAIVERRLKEMKIDYVKS 110 (195)
Q Consensus 83 ~~Hiaf~v~d----l~~~~~~l~~~gv~~~~~ 110 (195)
...+.+.+++ ++.+.+.|++.|+++...
T Consensus 41 ~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~ 72 (85)
T cd04906 41 HIFVGVSVANGAEELAELLEDLKSAGYEVVDL 72 (85)
T ss_pred EEEEEEEeCCcHHHHHHHHHHHHHCCCCeEEC
Confidence 4557778878 999999999999998654
No 176
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=32.66 E-value=81 Score=24.78 Aligned_cols=38 Identities=26% Similarity=0.390 Sum_probs=29.3
Q ss_pred CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCE
Q 029305 92 NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSM 131 (195)
Q Consensus 92 dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~ 131 (195)
|++.+.+.|.+.|+++.... -+|..++.++|..-+|..
T Consensus 140 Ni~~a~~~L~~~gI~Iva~D--vGG~~gRki~f~~~tG~v 177 (213)
T PRK13493 140 NVEFVLEYAKREKLNVVAQD--LGGAQPRKLLFDPQTGQA 177 (213)
T ss_pred HHHHHHHHHHHcCCcEEEEe--CCCCCCcEEEEECCCCEE
Confidence 89999999999999998765 355556888876555543
No 177
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=32.25 E-value=1.5e+02 Score=19.48 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=24.8
Q ss_pred cceEEEEcCCHHHHHHHHHhccCCeEeecCC
Q 029305 14 LNHISLVCRSVEASLDFYQNVLGFFPIRRPG 44 (195)
Q Consensus 14 i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~ 44 (195)
..|+.+.|.|++++.+-... .|.++.....
T Consensus 58 ~~~i~~~v~d~~~~~~~l~~-~G~~~~~~~~ 87 (112)
T cd07238 58 VPDLSIEVDDVDAALARAVA-AGFAIVYGPT 87 (112)
T ss_pred CCEEEEEeCCHHHHHHHHHh-cCCeEecCCc
Confidence 46999999999999998877 8988776443
No 178
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=32.22 E-value=86 Score=24.40 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCE
Q 029305 91 ENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSM 131 (195)
Q Consensus 91 ~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~ 131 (195)
.|++.+.+.|++.|+++.... -+|..++.++|..-+|..
T Consensus 127 rNi~~a~~~L~~~gI~iva~D--vGG~~gR~v~f~~~tG~v 165 (201)
T PRK13487 127 RNAEFVRDYLQTERIPIVAED--LLDIYPRKVYFFPTTGKV 165 (201)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--CCCCCCcEEEEECCCCEE
Confidence 389999999999999998765 355556888886666654
No 179
>PHA02097 hypothetical protein
Probab=31.04 E-value=45 Score=19.86 Aligned_cols=14 Identities=14% Similarity=0.240 Sum_probs=12.0
Q ss_pred EEECCCCCEEEEEe
Q 029305 123 FFHDPDGSMIEICN 136 (195)
Q Consensus 123 ~~~DPdGn~iEi~~ 136 (195)
.+.||+||..|+|.
T Consensus 45 vv~~~n~ng~~~~h 58 (59)
T PHA02097 45 VVKDANYNGFELVH 58 (59)
T ss_pred EEecCCCCcEEEec
Confidence 57899999999985
No 180
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=30.79 E-value=57 Score=23.25 Aligned_cols=89 Identities=11% Similarity=0.170 Sum_probs=52.7
Q ss_pred CccceEEEEcCCHHHHHHHHHhccCCeEeecCC----CCCCCccEE-----EeecCcEEEEeeeCCCCCCCCCCCCCCCC
Q 029305 12 KSLNHISLVCRSVEASLDFYQNVLGFFPIRRPG----SFDFDGACR-----LFNYGMGIHLLKSEEPDNLPKAGKNINPK 82 (195)
Q Consensus 12 ~~i~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~----~~~~~~~~~-----~~~~g~~~~ll~~~~~~~~~~~~~~~~~g 82 (195)
..++-+.+.|.+.+.+.+-..+ -||.+....- -.+.+|... +-..+..+..+..--... .
T Consensus 40 ~dFGIiRmvV~~~d~A~~~Lee-~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek----------~ 108 (142)
T COG4747 40 GDFGIIRMVVDRPDEAHSVLEE-AGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK----------Q 108 (142)
T ss_pred cCcceEEEEcCChHHHHHHHHH-CCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC----------c
Confidence 4467788999999999999988 8887754321 001112110 011122222221110000 1
Q ss_pred ceEEEEEeCCHHHHHHHHHhCCCeEeccc
Q 029305 83 DNHISFQCENMAIVERRLKEMKIDYVKSR 111 (195)
Q Consensus 83 ~~Hiaf~v~dl~~~~~~l~~~gv~~~~~~ 111 (195)
-.-+-++++|++++.+.|.++|+++....
T Consensus 109 KAlli~r~ed~d~~~~aLed~gi~~~~~~ 137 (142)
T COG4747 109 KALLIVRVEDIDRAIKALEDAGIKLIGMK 137 (142)
T ss_pred eEEEEEEhhHHHHHHHHHHHcCCeecChH
Confidence 22477899999999999999999987643
No 181
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=30.19 E-value=2e+02 Score=20.42 Aligned_cols=56 Identities=11% Similarity=0.168 Sum_probs=32.5
Q ss_pred CceEEEEEeCCHHHHHHHHHhCCCeE--ecccee----cCCc-------------ceEEEEEECCCCCEEEEEec
Q 029305 82 KDNHISFQCENMAIVERRLKEMKIDY--VKSRVE----EGGI-------------NVDQLFFHDPDGSMIEICNC 137 (195)
Q Consensus 82 g~~Hiaf~v~dl~~~~~~l~~~gv~~--~~~~~~----~~~~-------------~~~~~~~~DPdGn~iEi~~~ 137 (195)
++.-+++.+++.+++.+.+++.++++ ...+.. ..+. .....|+.||+|.++..+..
T Consensus 64 ~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g 138 (154)
T PRK09437 64 GVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDK 138 (154)
T ss_pred CCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcC
Confidence 45556776776677776666666543 221110 0010 01356899999999888753
No 182
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=29.65 E-value=80 Score=25.68 Aligned_cols=19 Identities=16% Similarity=0.466 Sum_probs=16.3
Q ss_pred eEEEEEECCCCCEEEEEec
Q 029305 119 VDQLFFHDPDGSMIEICNC 137 (195)
Q Consensus 119 ~~~~~~~DPdGn~iEi~~~ 137 (195)
+-.+|+.||+|..++.+-.
T Consensus 242 Si~mYLidPeg~Fvd~~Gr 260 (280)
T KOG2792|consen 242 SIFMYLIDPEGEFVDYYGR 260 (280)
T ss_pred eEEEEEECCCcceehhhcc
Confidence 4679999999999998864
No 183
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=29.48 E-value=73 Score=22.12 Aligned_cols=54 Identities=17% Similarity=0.082 Sum_probs=36.5
Q ss_pred EeCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCCCCC
Q 029305 89 QCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPV 142 (195)
Q Consensus 89 ~v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~~~~ 142 (195)
+..+....+++|++.|.-.++.....-..+.-.+...|++|..+|-..-.-..+
T Consensus 22 Qik~f~~~~~~l~~~G~V~iG~~~g~f~~g~Ivlla~D~~~~I~~~~~M~G~TV 75 (109)
T PF06923_consen 22 QIKNFNKAYKELRKKGRVGIGRSKGRFRPGVIVLLAVDEDGRIVDAEIMKGITV 75 (109)
T ss_pred HHHHHHHHHHHHHhCCcEEEeeecCcccCCeEEEEEECCCCcEEEEEEEeceEE
Confidence 344677888999999844444432222335677889999999999877654444
No 184
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=29.35 E-value=1e+02 Score=24.65 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=29.6
Q ss_pred CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCE
Q 029305 92 NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSM 131 (195)
Q Consensus 92 dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~ 131 (195)
|++.+.+.|.+.|+++.... -+|..++.++|..-+|..
T Consensus 126 Nieaa~~~L~~~gI~IvaeD--vGG~~gRkV~f~~~TG~v 163 (233)
T PRK13489 126 NADFVRRYLALERIRITAED--LQGVHPRKVAFMPRTGRA 163 (233)
T ss_pred HHHHHHHHHHHcCCcEEEEe--CCCCCCcEEEEECCCCEE
Confidence 89999999999999998765 355566888886555544
No 185
>COG5301 Phage-related tail fibre protein [General function prediction only]
Probab=29.06 E-value=80 Score=28.04 Aligned_cols=38 Identities=24% Similarity=0.425 Sum_probs=31.9
Q ss_pred ceecCCcceEEEEEECCCCCEEEEEecCCCCCCCCCCcc
Q 029305 111 RVEEGGINVDQLFFHDPDGSMIEICNCDVLPVVPLAGDA 149 (195)
Q Consensus 111 ~~~~~~~~~~~~~~~DPdGn~iEi~~~~~~~~~p~~~~~ 149 (195)
|+..+||..+.+=+.|.||-.|-+-.|++ ...|..++|
T Consensus 80 PetvGGwwiREvGlfDadG~liavgncPe-SYKpqm~eG 117 (587)
T COG5301 80 PETVGGWWIREVGLFDADGKLIAVGNCPE-SYKPQMEEG 117 (587)
T ss_pred cccccceEEEEeeeecCCCCEEEEccCCc-cccccccCC
Confidence 34568899999999999999999999987 677777765
No 186
>PHA02754 hypothetical protein; Provisional
Probab=28.42 E-value=1.5e+02 Score=18.22 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCeEecccee-cCCcceEEEEEECCCCCEEEEEec
Q 029305 93 MAIVERRLKEMKIDYVKSRVE-EGGINVDQLFFHDPDGSMIEICNC 137 (195)
Q Consensus 93 l~~~~~~l~~~gv~~~~~~~~-~~~~~~~~~~~~DPdGn~iEi~~~ 137 (195)
+.++.+.|.+.|+.+..-..- -.| .-+.+.-.||..||+.+-
T Consensus 20 MRelkD~LSe~GiYi~RIkai~~SG---dkIVVi~aD~I~i~ls~T 62 (67)
T PHA02754 20 MRELKDILSEAGIYIDRIKAITTSG---DKIVVITADAIKIELSET 62 (67)
T ss_pred HHHHHHHHhhCceEEEEEEEEEecC---CEEEEEEcceEEEEEEee
Confidence 456667888889887654321 122 356677788999988774
No 187
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=28.18 E-value=1e+02 Score=23.83 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=16.2
Q ss_pred CCcceEEEEEECCCCCEEEEEe
Q 029305 115 GGINVDQLFFHDPDGSMIEICN 136 (195)
Q Consensus 115 ~~~~~~~~~~~DPdGn~iEi~~ 136 (195)
.|...+..|+.||+|.+=-+..
T Consensus 120 ~g~a~R~~FIIDp~g~ir~~~v 141 (194)
T COG0450 120 EGLALRGTFIIDPDGVIRHILV 141 (194)
T ss_pred CCcceeEEEEECCCCeEEEEEE
Confidence 3445689999999997655554
No 188
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=27.47 E-value=88 Score=22.17 Aligned_cols=54 Identities=13% Similarity=-0.086 Sum_probs=36.1
Q ss_pred EeCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCCCCC
Q 029305 89 QCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVLPV 142 (195)
Q Consensus 89 ~v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~~~~ 142 (195)
++.+....++.|.+.|---++.....-..+.-.+...|++|.++|-..-.-..+
T Consensus 23 Qik~Fn~~~~~L~~~G~V~iGr~~grf~~g~IvllaiD~~~~I~d~~~M~G~TV 76 (118)
T PRK10234 23 QISRFNRAFDTLCQQGRVGVGRSSGRFKPRVVVALALDEQQRVVDTLFMKGLTV 76 (118)
T ss_pred HHHHHHHHHHHHHhcCceEEecccCccCCCeEEEEEECCCCcEEeeEEEccEEE
Confidence 445677888999998864444432222235567889999999999877554433
No 189
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=26.40 E-value=1.2e+02 Score=19.03 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=20.5
Q ss_pred eEEEEEeC--CHHHHHHHHHhCCCeEec
Q 029305 84 NHISFQCE--NMAIVERRLKEMKIDYVK 109 (195)
Q Consensus 84 ~Hiaf~v~--dl~~~~~~l~~~gv~~~~ 109 (195)
.-+|+.++ |.+.+.+.|++.|+.+..
T Consensus 41 CG~al~~~~~d~~~i~~~l~~~~i~~~~ 68 (73)
T PF11823_consen 41 CGLALRFEPEDLEKIKEILEENGIEYEG 68 (73)
T ss_pred CCEEEEEChhhHHHHHHHHHHCCCCeeE
Confidence 34677765 899999999999988753
No 190
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.33 E-value=1.3e+02 Score=19.80 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=23.4
Q ss_pred CceEEEEEeC--CHHHHHHHHHhCCCeEecc
Q 029305 82 KDNHISFQCE--NMAIVERRLKEMKIDYVKS 110 (195)
Q Consensus 82 g~~Hiaf~v~--dl~~~~~~l~~~gv~~~~~ 110 (195)
..+|+-|.-. +++++.+.|.++|+++...
T Consensus 49 ~Sy~V~Fl~~~~s~eev~~ele~mga~in~d 79 (88)
T COG4009 49 SSYYVVFLEEVESEEEVERELEDMGAEINRD 79 (88)
T ss_pred eeEEEEEEeccCCHHHHHHHHHHhCchhccc
Confidence 3578888655 8999999999999987644
No 191
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=25.64 E-value=85 Score=15.11 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=7.9
Q ss_pred EEEEECCCCCEE
Q 029305 121 QLFFHDPDGSMI 132 (195)
Q Consensus 121 ~~~~~DPdGn~i 132 (195)
...+.|++|+++
T Consensus 8 ~~i~~D~~G~lW 19 (24)
T PF07494_consen 8 YSIYEDSDGNLW 19 (24)
T ss_dssp EEEEE-TTSCEE
T ss_pred EEEEEcCCcCEE
Confidence 346778998876
No 192
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=25.58 E-value=1.3e+02 Score=22.52 Aligned_cols=38 Identities=16% Similarity=0.381 Sum_probs=26.1
Q ss_pred EEEEeCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCC
Q 029305 86 ISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDG 129 (195)
Q Consensus 86 iaf~v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdG 129 (195)
+=+.++|.+.+.++|.+.|........ ..-.||..|++
T Consensus 6 ~K~~v~d~~~~~~~L~~~g~~~~~~~~------q~D~Yfd~p~~ 43 (174)
T TIGR00318 6 VKAKIPDKEKVVEKLKNKGFKFIKKEF------QHDIYFSNPCR 43 (174)
T ss_pred EEEEcCCHHHHHHHHHhcCcccccccc------eEEEeecCCCc
Confidence 345677999999999999866544321 24567777764
No 193
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=25.56 E-value=71 Score=23.87 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=14.6
Q ss_pred EEEEEECCCCCEEEEEec
Q 029305 120 DQLFFHDPDGSMIEICNC 137 (195)
Q Consensus 120 ~~~~~~DPdGn~iEi~~~ 137 (195)
..+|+.||+|....++..
T Consensus 156 ~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 156 AFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp SEEEEE-TTSEEEEEECS
T ss_pred cEEEEEcCCCcEEEEEcc
Confidence 589999999999998863
No 194
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=24.89 E-value=33 Score=20.67 Aligned_cols=23 Identities=13% Similarity=0.008 Sum_probs=16.6
Q ss_pred cchhhhhhhh-hhcCCCCCCCccc
Q 029305 159 VNCNFHQQQI-QQEPQINPQSCLS 181 (195)
Q Consensus 159 ~~~~~~~~~~-~~~~~~~~~~~~~ 181 (195)
+++-+.+.+. ...+.+.|+||+|
T Consensus 7 v~vlRel~r~~~~~~~~~PVVFTS 30 (58)
T PF08415_consen 7 VEVLRELARRGGGRAAVMPVVFTS 30 (58)
T ss_pred HHHHHHHHHhcCCCCCcCCEEEeC
Confidence 4444555554 6799999999988
No 195
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=24.05 E-value=1.4e+02 Score=19.34 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=15.3
Q ss_pred cCCHHHHHHHHHhccCCeEeec
Q 029305 21 CRSVEASLDFYQNVLGFFPIRR 42 (195)
Q Consensus 21 v~dl~~s~~FY~~~LG~~~~~~ 42 (195)
..+=+.|.++|++ |||+...+
T Consensus 62 ~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 62 DADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp ETT-HHHHHHHHH-CT-EEEEE
T ss_pred ECCCHHHHHHHHH-cCCEEEEE
Confidence 3566789999988 99998854
No 196
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=23.55 E-value=70 Score=26.31 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=37.6
Q ss_pred CceEEEEEeC-CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEec
Q 029305 82 KDNHISFQCE-NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNC 137 (195)
Q Consensus 82 g~~Hiaf~v~-dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~ 137 (195)
..+-++..|+ ++..+++.|++..-.+...|+..+. .+..-|..++|+.+|+.+.
T Consensus 157 qd~aiS~evdDsl~~il~lLr~~D~sFrpvPh~~d~--ak~~~fqn~~~y~VefLTt 211 (349)
T COG5397 157 QDYAISREVDDSLPPILDLLRSVDPSFRPVPHRSDP--AKSSAFQNRDGYRVEFLTT 211 (349)
T ss_pred HhhhhhHHhcccccHHHHHHhccCcccccCCccCCC--ccceeeecCCCeEEEEecc
Confidence 3455666776 6888888888777666655533322 2455669999999999983
No 197
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=23.00 E-value=65 Score=25.45 Aligned_cols=44 Identities=20% Similarity=0.264 Sum_probs=28.5
Q ss_pred EEEeCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEE
Q 029305 87 SFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEIC 135 (195)
Q Consensus 87 af~v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~ 135 (195)
+|+-.+-+.+.+.| .|+.+...+. -| +...|++.||||+..-+|
T Consensus 183 ~~~~~~~~~~~~~~--~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~ 226 (228)
T PRK06704 183 SIREERPELLTKLL--PTIDFTKLPS--KQ-PVLLFNVKQPSSYSCMLC 226 (228)
T ss_pred HHHhcCHHHHHHHh--ccceeeeccc--cc-ceEEEEeeCCCccchhhc
Confidence 44555666666655 5666665442 12 457899999999976554
No 198
>PF13225 DUF4033: Domain of unknown function (DUF4033)
Probab=22.78 E-value=98 Score=20.62 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=18.5
Q ss_pred HHHHHHhccCCeEeecCCCCCCCcc
Q 029305 27 SLDFYQNVLGFFPIRRPGSFDFDGA 51 (195)
Q Consensus 27 s~~FY~~~LG~~~~~~~~~~~~~~~ 51 (195)
+.+|+++-||+.+.-.+.-.++.-.
T Consensus 49 tQ~Ff~~~~Glpl~M~PNfed~SC~ 73 (86)
T PF13225_consen 49 TQTFFKEEFGLPLTMEPNFEDFSCQ 73 (86)
T ss_pred hHHHHHhccCCceEecCCCcCcEEE
Confidence 4589999999999988764444333
No 199
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=22.44 E-value=1.9e+02 Score=17.38 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=19.1
Q ss_pred EEEEEeCCHHHHHHHHHhCCCeEe
Q 029305 85 HISFQCENMAIVERRLKEMKIDYV 108 (195)
Q Consensus 85 Hiaf~v~dl~~~~~~l~~~gv~~~ 108 (195)
.+-+.+++.+.+.+.|+++|+++.
T Consensus 42 ~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 42 ILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred EEEEEECCHHHHHHHHHHCCCEEE
Confidence 355566888899999999998863
No 200
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=22.19 E-value=2.2e+02 Score=22.05 Aligned_cols=48 Identities=19% Similarity=0.316 Sum_probs=27.3
Q ss_pred CCceEEEEEeCCHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCC
Q 029305 81 PKDNHISFQCENMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPD 128 (195)
Q Consensus 81 ~g~~Hiaf~v~dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPd 128 (195)
.++.+|.+.-.++..+.+.++..||.+........+.+...++|.-.|
T Consensus 32 ~~l~~i~i~~~~lk~F~k~AkKyGV~yav~kdk~~~~~~~~V~FkA~D 79 (204)
T PF12687_consen 32 KGLKNIEITDEDLKEFKKEAKKYGVDYAVKKDKSTGPGKYDVFFKAKD 79 (204)
T ss_pred CCceEEecCHhhHHHHHHHHHHcCCceEEeeccCCCCCcEEEEEEcCc
Confidence 345566666667777777877777776544322222223455554444
No 201
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=21.93 E-value=1.3e+02 Score=21.74 Aligned_cols=29 Identities=34% Similarity=0.552 Sum_probs=22.7
Q ss_pred ceEEEEcC-CHHHHHHHHHhccCCeEeecCC
Q 029305 15 NHISLVCR-SVEASLDFYQNVLGFFPIRRPG 44 (195)
Q Consensus 15 ~hv~l~v~-dl~~s~~FY~~~LG~~~~~~~~ 44 (195)
..+.|.|+ +=+.+..||++ +||+...+..
T Consensus 127 ~~~~L~V~~~N~~Ai~lY~~-~GF~~~~~~~ 156 (177)
T COG0456 127 DKIVLEVRESNEAAIGLYRK-LGFEVVKIRK 156 (177)
T ss_pred ceEEEEEecCChHHHHHHHH-cCCEEEeeeh
Confidence 56777775 44599999998 9999987654
No 202
>PF15584 Imm44: Immunity protein 44
Probab=21.85 E-value=52 Score=22.20 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=28.3
Q ss_pred CCCCCC-CCCcchhhcccccccchhhhhhhhhhcC-CCCCCCcccccccccccccc
Q 029305 139 VLPVVP-LAGDAVRIRSCTSTVNCNFHQQQIQQEP-QINPQSCLSDSIHAKEDFLH 192 (195)
Q Consensus 139 ~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 192 (195)
++|..| -...+.++.|. +++-++++|+....++ .+ +.+|.++||
T Consensus 5 ~lP~vP~~~~~~~~I~SG-~~iP~~GIwEPv~~~~~K~---------~~gc~NYf~ 50 (94)
T PF15584_consen 5 PLPEVPKNPSEGGVIKSG-QEIPCDGIWEPVDAPKPKL---------NVGCPNYFL 50 (94)
T ss_pred ccCcCCCCCCCCCEEecC-CCcccCCeEccccCCCCcc---------ccCcchhhc
Confidence 445555 23334455555 9999999999877533 44 567777766
No 203
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=21.49 E-value=1.4e+02 Score=19.80 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=23.1
Q ss_pred CCceEEEEEeC---CHHHHHHHHHhCCCeEeccc
Q 029305 81 PKDNHISFQCE---NMAIVERRLKEMKIDYVKSR 111 (195)
Q Consensus 81 ~g~~Hiaf~v~---dl~~~~~~l~~~gv~~~~~~ 111 (195)
.+...++|.++ +++++.++|++.|+++....
T Consensus 49 ~a~vlvgi~v~~~~~~~~l~~~L~~~gy~~~dls 82 (91)
T PF00585_consen 49 FARVLVGIEVPDAEDLEELIERLKALGYPYEDLS 82 (91)
T ss_dssp CSEEEEEEE-SSTHHHHHHHHHHTSSS-EEECTT
T ss_pred eeeEEEEEEeCCHHHHHHHHHHHHHcCCCeEECC
Confidence 45667889998 46789999999999987654
No 204
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.39 E-value=1.7e+02 Score=17.19 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=17.0
Q ss_pred EEEEEeC---CHHHHHHHHHhCCCeEe
Q 029305 85 HISFQCE---NMAIVERRLKEMKIDYV 108 (195)
Q Consensus 85 Hiaf~v~---dl~~~~~~l~~~gv~~~ 108 (195)
++.+.+. +++.+.+.|++.|+++.
T Consensus 46 ~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 46 ELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 3445554 45689999999998764
No 205
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.21 E-value=1.7e+02 Score=17.83 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=20.4
Q ss_pred CceEEEEEeC---CHHHHHHHHHhCCCeEe
Q 029305 82 KDNHISFQCE---NMAIVERRLKEMKIDYV 108 (195)
Q Consensus 82 g~~Hiaf~v~---dl~~~~~~l~~~gv~~~ 108 (195)
+..++.+.+. .++++.+.|++.|+.+.
T Consensus 38 ~~v~v~ie~~~~~~~~~i~~~L~~~G~~~~ 67 (68)
T cd04885 38 ARVLVGIQVPDREDLAELKERLEALGYPYV 67 (68)
T ss_pred eEEEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 3456777776 58888999999998753
No 206
>TIGR01570 A_thal_3588 uncharacterized plant-specific domain TIGR01570. This model represents a region of about 170 amino acids found at the C-terminus of a family of plant proteins. These proteins typically have additional highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterized protein. At least 12 distinct members are found in Arabidopsis thaliana.
Probab=21.14 E-value=68 Score=23.92 Aligned_cols=13 Identities=15% Similarity=0.785 Sum_probs=11.3
Q ss_pred ceEEEEEECCCCC
Q 029305 118 NVDQLFFHDPDGS 130 (195)
Q Consensus 118 ~~~~~~~~DPdGn 130 (195)
.+++||+.+|||+
T Consensus 137 DSEsfyminPdg~ 149 (161)
T TIGR01570 137 DSESFYMINPEGN 149 (161)
T ss_pred CceeEEeECCCCC
Confidence 4589999999998
No 207
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=20.71 E-value=1.2e+02 Score=18.49 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=17.7
Q ss_pred ccceEEEEcC-CHHHHHHHHHhccCCe
Q 029305 13 SLNHISLVCR-SVEASLDFYQNVLGFF 38 (195)
Q Consensus 13 ~i~hv~l~v~-dl~~s~~FY~~~LG~~ 38 (195)
++..+.+.|. +=..+..||++ +||+
T Consensus 58 g~~~i~~~~~~~n~~~~~~~~k-~Gf~ 83 (83)
T PF00583_consen 58 GIKRIYLDVSPDNPAARRFYEK-LGFE 83 (83)
T ss_dssp TESEEEEEEETTGHHHHHHHHH-TTEE
T ss_pred CccEEEEEEeCCCHHHHHHHHH-cCCC
Confidence 4566666664 44559999987 8875
No 208
>PRK03467 hypothetical protein; Provisional
Probab=20.61 E-value=3.5e+02 Score=19.83 Aligned_cols=49 Identities=8% Similarity=0.061 Sum_probs=32.8
Q ss_pred CHHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCCC
Q 029305 92 NMAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDVL 140 (195)
Q Consensus 92 dl~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~~ 140 (195)
++..+.+.|+++-+--.......+-|-...+|+.|+++..+=+...+..
T Consensus 6 ~~~~I~~fl~~~hvltLa~~~~~~~w~A~cFY~fd~~~~~l~~~S~~~T 54 (144)
T PRK03467 6 TLTAISRWLAKQHVVTLCVGQEGELWCANCFYVFDAQKVAFYLLTEEKT 54 (144)
T ss_pred HHHHHHHHHHhCcEEEEEEEcCCCcceEEEEEEEcCCCeEEEEEcCCCC
Confidence 5667777777766543333323334445789999999999999887643
No 209
>PF04759 DUF617: Protein of unknown function, DUF617; InterPro: IPR006460 This family of hypothetical plant proteins are defined by a region of about 170 amino acids found at the C terminus. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. At least 12 distinct members are found in Arabidopsis thaliana (Mouse-ear cress).
Probab=20.60 E-value=67 Score=24.13 Aligned_cols=14 Identities=21% Similarity=0.693 Sum_probs=11.9
Q ss_pred ceEEEEEECCCCCE
Q 029305 118 NVDQLFFHDPDGSM 131 (195)
Q Consensus 118 ~~~~~~~~DPdGn~ 131 (195)
.+++||+.+|||+.
T Consensus 142 DSEsfyminPdg~~ 155 (166)
T PF04759_consen 142 DSESFYMINPDGNG 155 (166)
T ss_pred CcceeEEECCCCCC
Confidence 45899999999986
No 210
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=20.22 E-value=4.5e+02 Score=20.86 Aligned_cols=47 Identities=11% Similarity=0.079 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCeEeccceecCCcceEEEEEECCCCCEEEEEecCC
Q 029305 93 MAIVERRLKEMKIDYVKSRVEEGGINVDQLFFHDPDGSMIEICNCDV 139 (195)
Q Consensus 93 l~~~~~~l~~~gv~~~~~~~~~~~~~~~~~~~~DPdGn~iEi~~~~~ 139 (195)
-+.+++.|++.|+........+.......+.+.|++|.+--+.....
T Consensus 65 g~~~~~~l~~~gId~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~ 111 (290)
T cd01939 65 FESLLDDFQSRGIDISHCYRKDIDEPASSYIIRSRAGGRTTIVNDNN 111 (290)
T ss_pred HHHHHHHHHHcCCceeeeeEcCCCCCeeEEEEEcCCCCeEEEEeCCC
Confidence 45677899999998655322222223346778888887766655443
Done!