BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029307
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 124/178 (69%)
Query: 8 NLEDVPSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDML 67
NLE+ ++DL+ EL RR C SKPD R I +G PGSGKGTQS +K +C CHL+TGD+L
Sbjct: 5 NLENFSTIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLL 64
Query: 68 RAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQK 127
R A KT LG+K K +++G+LV D +V+ ++DE +K P C+KGFILDG+PR QA+
Sbjct: 65 REAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQCKKGFILDGYPRNVKQAED 124
Query: 128 LDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVS 185
L+++L+K K+D V F + D VL RI+GR IH SGR YH F PPKVP DDV+
Sbjct: 125 LNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVT 182
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 189 bits (480), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 119/152 (78%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R +L+GPPG+GKGTQ+P + + +C+CHLATGDMLRA VA+ + LG K K MD G+LVSD
Sbjct: 18 RAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSD 77
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
++VV +I++ ++ P C+ GF+LDGFPRT QA+ LD+++EK+ +K+D V+ F+I D++L
Sbjct: 78 EMVVELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLI 137
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVS 185
RITGR IHP SGR+YH +F PPK P DD++
Sbjct: 138 RRITGRLIHPKSGRSYHEEFNPPKEPMKDDIT 169
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 187 bits (476), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 118/152 (77%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R +L+GPPG+GKGTQ+P + +C+CHLATGDMLRA VA+ + LG K K MD G+LVSD
Sbjct: 18 RAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSD 77
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
++V+ +I++ ++ P C+ GF+LDGFPRT QA+ LD+++EK+ +K+D V+ F+I D++L
Sbjct: 78 EMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLI 137
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVS 185
RITGR IHP SGR+YH +F PPK P DD++
Sbjct: 138 RRITGRLIHPQSGRSYHEEFNPPKEPMKDDIT 169
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 116/153 (75%), Gaps = 1/153 (0%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R++L+GPPG+GKGTQ+P +++ + HLATGDMLR+ +A T LG++AK+ MD+G LVSD
Sbjct: 6 RMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 65
Query: 94 DLVVGII-DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL 152
D++V +I DE P+C+ GFILDGFPRT QA+KLD+ML++QG ++K + +DD +L
Sbjct: 66 DIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELL 125
Query: 153 EERITGRWIHPSSGRTYHTKFAPPKVPGVDDVS 185
RITGR IHP+SGR+YH F PPK DDV+
Sbjct: 126 VARITGRLIHPASGRSYHKIFNPPKEDMKDDVT 158
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 116/153 (75%), Gaps = 1/153 (0%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R++L+GPPG+GKGTQ+P +++ + HLATGDMLR+ +A T LG++AK+ MD+G LVSD
Sbjct: 6 RMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 65
Query: 94 DLVVGII-DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL 152
D++V +I DE P+C+ GFILDGFPRT QA+KLD+ML++QG ++K + +DD +L
Sbjct: 66 DIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELL 125
Query: 153 EERITGRWIHPSSGRTYHTKFAPPKVPGVDDVS 185
RITGR IHP+SGR+YH F PPK DDV+
Sbjct: 126 VARITGRLIHPASGRSYHKIFNPPKEDMKDDVT 158
>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
Length = 220
Score = 177 bits (450), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 115/153 (75%), Gaps = 1/153 (0%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R++L+GPPG+GKGTQ+P +++ + HLATGDMLR+ +A T LG++AK+ MD+G LVSD
Sbjct: 6 RMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 65
Query: 94 DLVVGII-DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL 152
D++V +I DE P+C+ GFIL GFPRT QA+KLD+ML++QG ++K + +DD +L
Sbjct: 66 DIMVNMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELL 125
Query: 153 EERITGRWIHPSSGRTYHTKFAPPKVPGVDDVS 185
RITGR IHP+SGR+YH F PPK DDV+
Sbjct: 126 VARITGRLIHPASGRSYHKIFNPPKEDMKDDVT 158
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 166 bits (420), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 80/163 (49%), Positives = 108/163 (66%), Gaps = 2/163 (1%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
LIL+G PGSGKGTQ IK EY L HL+TGDMLR A+ T +G++AK ++ G V D
Sbjct: 7 NLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGD 66
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
++V+G++ E C GF+LDGFPRT QA+ L ++L + G + V+ F IDD+ +
Sbjct: 67 EIVLGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEII 126
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVSR--CNWRTFDS 194
ERI+GR HP+SGR YH K+ PPK PG+DDV+ WR D+
Sbjct: 127 ERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDN 169
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 162 bits (411), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 77/150 (51%), Positives = 104/150 (69%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
++L+G PG+GKGTQ+ I ++Y + H++TGDM RAA+ T LG+KAK MD+G LV D
Sbjct: 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
++ +GI+ E + K CQKGF+LDGFPRT QA LD +L GKK+D VLN ++ L
Sbjct: 62 EVTIGIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELM 121
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDD 183
+R+TGRWI + G TYHT F PP V G+ D
Sbjct: 122 KRLTGRWICKTCGATYHTIFNPPAVEGICD 151
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 157 bits (397), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 103/152 (67%), Gaps = 4/152 (2%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 94
L+ +GPPG+GKGTQ+ + E H++TGD+LR AV TPLG KAKE M++GELV DD
Sbjct: 3 LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDD 62
Query: 95 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 154
L++ +I+E K I DGFPRT QA+ LDEMLEK+G KVD VL F + D V+ E
Sbjct: 63 LIIALIEEVFPK---HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIE 119
Query: 155 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVSR 186
R++GR I+P +G YH K+ PP PGV + R
Sbjct: 120 RLSGRRINPETGEVYHVKYNPPP-PGVKVIQR 150
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/149 (50%), Positives = 103/149 (69%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 94
L+L+G PG+GKGTQ+ I Y + H++TGDM RAA+ TPLG++AK+ MD+G+LV D+
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDE 62
Query: 95 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 154
+ +GI+ E + K CQ GF+LDGFPRT QA+ L+ ML G+K+D V++ + VL E
Sbjct: 63 VTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLME 122
Query: 155 RITGRWIHPSSGRTYHTKFAPPKVPGVDD 183
R+TGR I + G TYH F PP PGV D
Sbjct: 123 RLTGRRICRNCGATYHLIFHPPAKPGVCD 151
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 155 bits (392), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 105/152 (69%), Gaps = 4/152 (2%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R+IL+G PG+GKGTQ+ I ++Y + ++TGDMLRAAV + + LG +AK+ MD G+LV+D
Sbjct: 2 RIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
+LV+ ++ E + + C+ GF+LDGFPRT QA + E G VD VL F + D ++
Sbjct: 62 ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELIV 117
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVS 185
+RI GR +H SGR YH KF PPKV G DDV+
Sbjct: 118 DRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVT 149
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 154 bits (389), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 103/152 (67%), Gaps = 4/152 (2%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
RLIL+G PG+GKGTQ+ IK+++ + ++TGD LRAAV A TPLG++AK D+G+LV D
Sbjct: 10 RLILLGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPD 69
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
L++G++ E +K+ C G++ DGFPRT QA E G +D VL + + +
Sbjct: 70 SLIIGLVKERLKEADCANGYLFDGFPRTIAQADAXKEA----GVAIDYVLEIDVPFSEII 125
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVS 185
ER +GR HP+SGRTYH KF PPKV G DDV+
Sbjct: 126 ERXSGRRTHPASGRTYHVKFNPPKVEGKDDVT 157
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 153 bits (386), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 108/149 (72%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 94
L+L+G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D+
Sbjct: 3 LVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDE 62
Query: 95 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 154
+ +GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ GK +D V+N +D VL E
Sbjct: 63 VTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLME 122
Query: 155 RITGRWIHPSSGRTYHTKFAPPKVPGVDD 183
R+TGR I G TYH F PPK PG+ D
Sbjct: 123 RLTGRRICSVCGTTYHLVFNPPKTPGICD 151
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 153 bits (386), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 108/149 (72%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 94
L+L+G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D+
Sbjct: 3 LVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDE 62
Query: 95 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 154
+ +GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ GK +D V+N +D VL E
Sbjct: 63 VTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLME 122
Query: 155 RITGRWIHPSSGRTYHTKFAPPKVPGVDD 183
R+TGR I G TYH F PPK PG+ D
Sbjct: 123 RLTGRRICSVCGTTYHLVFNPPKTPGICD 151
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 153 bits (386), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 108/149 (72%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 94
L+L+G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D+
Sbjct: 3 LVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDE 62
Query: 95 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 154
+ +GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ GK +D V+N +D VL E
Sbjct: 63 VTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLME 122
Query: 155 RITGRWIHPSSGRTYHTKFAPPKVPGVDD 183
R+TGR I G TYH F PPK PG+ D
Sbjct: 123 RLTGRRICSVCGTTYHLVFNPPKTPGICD 151
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 153 bits (386), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 108/150 (72%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
L+L+G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D
Sbjct: 2 NLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
++ +GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ GK +D V+N +D VL
Sbjct: 62 EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLM 121
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDD 183
ER+TGR I G TYH F PPK PG+ D
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICD 151
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 153 bits (386), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 108/149 (72%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 94
L+L+G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D+
Sbjct: 3 LVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDE 62
Query: 95 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 154
+ +GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ GK +D V+N +D VL E
Sbjct: 63 VTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLME 122
Query: 155 RITGRWIHPSSGRTYHTKFAPPKVPGVDD 183
R+TGR I G TYH F PPK PG+ D
Sbjct: 123 RLTGRRICSVCGTTYHLVFNPPKTPGICD 151
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 153 bits (386), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 108/149 (72%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 94
L+L+G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D+
Sbjct: 3 LVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDE 62
Query: 95 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 154
+ +GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ GK +D V+N +D VL E
Sbjct: 63 VTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLME 122
Query: 155 RITGRWIHPSSGRTYHTKFAPPKVPGVDD 183
R+TGR I G TYH F PPK PG+ D
Sbjct: 123 RLTGRRICSVCGTTYHLVFNPPKTPGICD 151
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
Length = 214
Score = 152 bits (385), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 103/150 (68%), Gaps = 4/150 (2%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R+IL+G PG+GKGTQ+ I ++Y + ++TGDMLRAAV + + LG +AK+ MD G+LV+D
Sbjct: 2 RIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
+LV+ ++ E + + C+ GF+LDGFPRT QA + E G VD VL F + D ++
Sbjct: 62 ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELIV 117
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDD 183
+RI GR +H SGR YH KF PPKV G DD
Sbjct: 118 DRIVGRRVHAPSGRVYHVKFNPPKVEGKDD 147
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 152 bits (385), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 108/150 (72%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
L+L+G PG+GKGTQ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D
Sbjct: 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
++ +GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ GK +D V+N +D VL
Sbjct: 62 EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLM 121
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDD 183
ER+TGR I G TYH F PPK PG+ D
Sbjct: 122 ERLTGRRICSVCGTTYHLVFNPPKTPGICD 151
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/152 (48%), Positives = 104/152 (68%), Gaps = 4/152 (2%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R+IL+G P +GKGTQ+ I ++Y + ++TGDMLRAAV + + LG +AK+ MD G+LV+D
Sbjct: 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
+LV+ ++ E + + C+ GF+LDGFPRT QA + E G VD VL F + D ++
Sbjct: 62 ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELIV 117
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVS 185
+RI GR +H SGR YH KF PPKV G DDV+
Sbjct: 118 DRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVT 149
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 150 bits (380), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/149 (50%), Positives = 108/149 (72%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 94
++L+G PG+GKGTQ+ I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D+
Sbjct: 3 IVLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDE 62
Query: 95 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 154
+ +GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ G+ +D V+N +D L E
Sbjct: 63 VTIGIVRERLSKSDCERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEELME 122
Query: 155 RITGRWIHPSSGRTYHTKFAPPKVPGVDD 183
R+TGR I G TYH F PPK PG+ D
Sbjct: 123 RLTGRRICSVCGTTYHLVFNPPKTPGICD 151
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 150 bits (378), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 77/149 (51%), Positives = 107/149 (71%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 94
L+L+G PG+GKGT I ++Y + H++TGDM RAA+ +TPLG++AK +DKGELV D+
Sbjct: 3 LVLMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDE 62
Query: 95 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 154
+ +GI+ E + K C++GF+LDGFPRT QA+ L+E+LE+ GK +D V+N +D VL E
Sbjct: 63 VTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLME 122
Query: 155 RITGRWIHPSSGRTYHTKFAPPKVPGVDD 183
R+TGR I G TYH F PPK PG+ D
Sbjct: 123 RLTGRRICSVCGTTYHLVFNPPKTPGICD 151
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 103/152 (67%), Gaps = 4/152 (2%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R+IL+G +GKGTQ+ I ++Y + ++TGDMLRAAV + + LG +AK+ MD G+LV+D
Sbjct: 2 RIILLGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
+LV+ ++ E + + C+ GF+LDGFPRT QA + E G VD VL F + D ++
Sbjct: 62 ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA----GINVDYVLEFDVPDELIV 117
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVS 185
+RI GR +H SGR YH KF PPKV G DDV+
Sbjct: 118 DRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVT 149
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 146 bits (369), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 98/147 (66%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
++L+G PG+GKGTQ+ I ++Y H++TGDM RAA+ T LG+KAK MD+G LV D
Sbjct: 2 NIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
++ +GI+ E + K C GF+LDGFPRT QA+ LD++L G+K++ VLN ++ L
Sbjct: 62 EVTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELI 121
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPG 180
R+TGR I G +YH F PP+V G
Sbjct: 122 ARLTGRRICKVCGTSYHLLFNPPQVEG 148
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 98/152 (64%), Gaps = 6/152 (3%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R +++G PGSGKGT S I + L HL++GD+LR + T +G+ AK +D+G+L+ D
Sbjct: 9 RAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPD 68
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
D++ + +K Q ++LDGFPRT QA+ LD + ++D V+N + V++
Sbjct: 69 DVMTRLALHELKN-LTQYSWLLDGFPRTLPQAEALD-----RAYQIDTVINLNVPFEVIK 122
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVS 185
+R+T RWIHP+SGR Y+ +F PPK G+DD++
Sbjct: 123 QRLTARWIHPASGRVYNIEFNPPKTVGIDDLT 154
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 97/152 (63%), Gaps = 6/152 (3%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R ++G PGSGKGT S I + L HL++GD+LR + T +G+ AK +D+G+L+ D
Sbjct: 8 RAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPD 67
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
D++ ++ +K Q ++LDGFPRT QA+ LD + ++D V+N + V++
Sbjct: 68 DVMTRLVLHELKN-LTQYNWLLDGFPRTLPQAEALD-----RAYQIDTVINLNVPFEVIK 121
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVS 185
+R+T RWIHP SGR Y+ +F PPK G+DD++
Sbjct: 122 QRLTARWIHPGSGRVYNIEFNPPKTMGIDDLT 153
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 105/163 (64%), Gaps = 8/163 (4%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
++++ G P SGKGTQ +IK +Y L H++ GD+LRA +AA + G +AKE M+KG+LV D
Sbjct: 7 KVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPD 66
Query: 94 DLVVGIIDEAMKKPSCQK-GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL 152
++VV ++ E +++P Q+ G++LDG+PR+ QA L E LE + D + + D +L
Sbjct: 67 EIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMAL-ETLE---IRPDTFILLDVPDELL 122
Query: 153 EERITGRWIHPSSGRTYHTKFAPPKVPGVDDVSRCNWRTFDST 195
ER+ GR + P +G+ YH K++PP+ + SR R FD T
Sbjct: 123 VERVVGRRLDPVTGKIYHLKYSPPENEEI--ASRLTQR-FDDT 162
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 123 bits (309), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 102/171 (59%), Gaps = 7/171 (4%)
Query: 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAK 74
VDL TE L ASK R +++GPPGSGKGT I + L HL++G LR + A
Sbjct: 11 VDLGTENLYFQSMASKL-LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS 69
Query: 75 TPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEK 134
T +G AK+ ++K LV D ++ ++ ++ Q ++LDGFPRT QA+ LD++ E
Sbjct: 70 TEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQH-WLLDGFPRTLGQAEALDKICE- 127
Query: 135 QGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVS 185
VD V++ I L++R++ RWIHP SGR Y+ F PP V G+DDV+
Sbjct: 128 ----VDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVT 174
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 93/152 (61%), Gaps = 6/152 (3%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R +++GPPGSGKGT I + L HL++G LR + A T +G AK+ ++K LV D
Sbjct: 7 RAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPD 66
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
++ ++ ++ Q ++LDGFPRT QA+ LD++ E VD V++ I L+
Sbjct: 67 HVITRLMMSELENRRGQH-WLLDGFPRTLGQAEALDKICE-----VDLVISLNIPFETLK 120
Query: 154 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVS 185
+R++ RWIHP SGR Y+ F PP V G+DDV+
Sbjct: 121 DRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVT 152
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 116 bits (291), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 84/126 (66%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R++L+GPPG+GKGTQ+ + ++ + ++TG++ R + T LG++AK +D G+LV
Sbjct: 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 81
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
DL ++D+ + P GFILDG+PR+ QA+ L EMLE++G +D VL F + + VL
Sbjct: 82 DLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLL 141
Query: 154 ERITGR 159
ER+ GR
Sbjct: 142 ERLKGR 147
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 116 bits (291), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 84/126 (66%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
R++L+GPPG+GKGTQ+ + ++ + ++TG++ R + T LG++AK +D G+LV
Sbjct: 2 RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
DL ++D+ + P GFILDG+PR+ QA+ L EMLE++G +D VL F + + VL
Sbjct: 62 DLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLL 121
Query: 154 ERITGR 159
ER+ GR
Sbjct: 122 ERLKGR 127
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 88/138 (63%), Gaps = 7/138 (5%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
+++ GP GSGKGTQ ++KD+Y L H+ +G + R + T LG KAKE +D+G+LV D
Sbjct: 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
D+ + ++ E ++ + G++LDGFPR VQAQKL E L+++G K++ V+ + V +
Sbjct: 62 DITIPMVLETLESKG-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAK 120
Query: 154 ERITGRWI------HPSS 165
RI GR I HP++
Sbjct: 121 NRIMGRRICKNNPNHPNN 138
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 88/138 (63%), Gaps = 7/138 (5%)
Query: 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 93
+++ GP GSGKGTQ ++KD+Y L H+ +G + R + T LG KAKE +D+G+LV D
Sbjct: 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPD 61
Query: 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLE 153
D+ + ++ E ++ + G++LDGFPR VQAQKL E L+++G K++ V+ + V +
Sbjct: 62 DITIPMVLETLESKG-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAK 120
Query: 154 ERITGRWI------HPSS 165
RI GR I HP++
Sbjct: 121 NRIMGRRICKNNPNHPNN 138
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 5/105 (4%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 94
+I +GPPG+GKGTQ+ + E L+TGD+LR VA TPLG + + M++G+LV DD
Sbjct: 7 VIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDD 66
Query: 95 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKV 139
L++ +I E + + I DGFPRT QA+ LD +L + G ++
Sbjct: 67 LILELIREELAER-----VIFDGFPRTLAQAEALDRLLSETGTRL 106
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 94
+ +VG PGSGKGTQ I +Y HL+TGD+LR+ V++ + G K E M+KG+LV +
Sbjct: 12 IFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLE 71
Query: 95 LVVGIIDEAM-KKPSCQKGFILDGFPRTEVQAQKLD 129
V+ ++ +AM K + KGF++DG+PR Q ++ +
Sbjct: 72 TVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFE 107
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Query: 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE 89
K K + +VG PGSGKGTQ I +Y HL+TGD+LRA V++ + G E M+KG+
Sbjct: 7 KKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQ 66
Query: 90 LVSDDLVVGIIDEAM-KKPSCQKGFILDGFPRTEVQAQKLD 129
LV + V+ ++ +AM K KGF++DG+PR Q ++ +
Sbjct: 67 LVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFE 107
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 80/137 (58%), Gaps = 23/137 (16%)
Query: 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS 92
K + ++G PGSGKGTQ + ++ HL++GD+LRA V + +P G + K M++GELV
Sbjct: 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVP 89
Query: 93 DDLVVGIIDEAMKK---PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDK-------V 142
++V+ ++ EAM K +C F++DG+PR +LD QG K +K V
Sbjct: 90 LEVVLALLKEAMIKLVDKNCH--FLIDGYPR------ELD-----QGIKFEKEVCPCLCV 136
Query: 143 LNFAIDDAVLEERITGR 159
+NF + + V+ +R+ R
Sbjct: 137 INFDVSEEVMRKRLLKR 153
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS 92
K + ++G PGSGKGTQ + ++Y HL+TG++LR +A+++ ++ M++G+LV
Sbjct: 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVP 72
Query: 93 DDLVVGIIDEAM-KKPSCQKGFILDGFPRTEVQAQKL 128
+V+ ++ EAM +GF++DG+PR Q ++
Sbjct: 73 SGIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEF 109
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 15/148 (10%)
Query: 28 ASKPDKR--LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA-AKTPLGIKAKEA 84
A PD+ + ++G PG+GKGTQ + +Y HL+ GD+LRA A + G K
Sbjct: 9 AFSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNC 68
Query: 85 MDKGELVSDDLVVGIIDEAMKK--PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDK- 141
+ +G++V ++ + ++ A+ + + F++DGFPR K+D+ + + V+
Sbjct: 69 IKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPR------KMDQAISFERDIVESK 122
Query: 142 -VLNFAIDDAVLEERITGRWIHPSSGRT 168
+L F + ++ ER+ R +SGR+
Sbjct: 123 FILFFDCPEDIMLERLLERG--KTSGRS 148
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND
Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 5/140 (3%)
Query: 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG 88
SKP+ +L G PGSGKGTQ I ++ HL+ GD+LR + + G + G
Sbjct: 4 SKPNVVFVL-GGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNG 62
Query: 89 ELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID 148
E+V + V ++ A+ + K F++DGFPR E +E + K VL F
Sbjct: 63 EIVPSIVTVKLLKNAI-DANQGKNFLVDGFPRNEENNNSWEENM-KDFVDTKFVLFFDCP 120
Query: 149 DAVLEERITGRWIHPSSGRT 168
+ V+ +R+ R SSGR+
Sbjct: 121 EEVMTQRLLKR--GESSGRS 138
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 12/141 (8%)
Query: 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTP---LGIKAKEAMDKGELV 91
+ ++G PG+GKGTQ I ++Y HL+ G++LR K P G ++ + +G++V
Sbjct: 6 VFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRD--ERKNPDSQYGELIEKYIKEGKIV 63
Query: 92 SDDLVVGII----DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI 147
++ + ++ D+ M + + F++DGFPR + Q ++ ++ + V VL F
Sbjct: 64 PVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKA-DVSFVLFFDC 122
Query: 148 DDAVLEERITGRWIHPSSGRT 168
++ + ER R SSGR+
Sbjct: 123 NNEICIERCLER--GKSSGRS 141
>pdb|1Q3T|A Chain A, Solution Structure And Function Of An Essential Cmp
Kinase Of Streptococcus Pneumoniae
Length = 236
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 39 GPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA--VAAKTPLGIKAKEAM 85
GP SGK T + II ++ +L TG M RAA +A K LG++ EA+
Sbjct: 23 GPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEAL 71
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 1 MASSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60
MA + A E V VD + R +K K ++LVGPPG+GK + + E +
Sbjct: 13 MAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPF 72
Query: 61 LATG 64
+ G
Sbjct: 73 FSMG 76
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56
E+L+ + + +P + L LVGP G GK T +++ Y
Sbjct: 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY 1129
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 26 KCASKPDKRLILVGPPGSGKGTQSPIIKDE 55
K +P + L+L GPPG GK T + +I E
Sbjct: 32 KARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 26 KCASKPDKRLILVGPPGSGKGTQSPIIKDE 55
K +P + L+L GPPG GK T + +I E
Sbjct: 32 KARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61
>pdb|1CQX|A Chain A, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
pdb|1CQX|B Chain B, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
Length = 403
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 21/158 (13%)
Query: 11 DVPSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70
DVP++ L + +R+ + P+ R + G G Q P H+ GD ++ A
Sbjct: 196 DVPALGL--QQIRQYSLSDMPNGRTYRISVKREGGGPQPPGYVSNLLHDHVNVGDQVKLA 253
Query: 71 ---------VAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRT 121
V AKTP+ + + V +V ++ A++ P Q F+ G +
Sbjct: 254 APYGSFHIDVDAKTPIVLISGG-------VGLTPMVSMLKVALQAPPRQVVFV-HGARNS 305
Query: 122 EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159
V A + + L + K + + F D L E + GR
Sbjct: 306 AVHAMR--DRLREAAKTYENLDLFVFYDQPLPEDVQGR 341
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 26 KCASKPDKRLILVGPPGSGKGTQSPIIKDE 55
K +P + L+L GPPG GK T + +I E
Sbjct: 32 KARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56
++L+ + P K LVGP GSGK T + ++++ Y
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56
++L+ + P K LVGP GSGK T + ++++ Y
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56
++L+ + P K LVGP GSGK T + ++++ Y
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 26 KCASKPDKRLILVGPPGSGK 45
+CAS+ + R+ILVG G+GK
Sbjct: 16 QCASRSELRIILVGKTGTGK 35
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 28.9 bits (63), Expect = 2.0, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGT 47
S D +L+ + KP +++ LVGP GSGK T
Sbjct: 363 SYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTT 396
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 26 KCASKPDKRLILVGPPGSGK 45
+CAS+ + R+ILVG G+GK
Sbjct: 16 QCASRSELRIILVGKTGTGK 35
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 8 NLEDVPSVDLMTELLRR-MKCASKPDKRLILVGPPGSGK 45
NL++V + D +L++ +K A+ P ++ GPPG+GK
Sbjct: 35 NLDEVTAQDHAVTVLKKTLKSANLP--HMLFYGPPGTGK 71
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55
V+ + E R K K K +++VGPPG+GK + I E
Sbjct: 28 VEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68
>pdb|3MX3|A Chain A, Crystal Structure Of A Susd Homolog (Bf0972) From
Bacteroides Fragilis Nctc 9343 At 2.00 A Resolution
pdb|3MX3|B Chain B, Crystal Structure Of A Susd Homolog (Bf0972) From
Bacteroides Fragilis Nctc 9343 At 2.00 A Resolution
Length = 490
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 143 LNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPP----KVPGVDDVSRCNW 189
+N A + +R+ RW +P S Y+ + + GVDDV++ W
Sbjct: 437 INPATNRNTXNDRLPXRWXYPKSESDYNLEHQNEALERQFGGVDDVNKLXW 487
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 9/134 (6%)
Query: 1 MASSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60
+A A LE VD + R ++ +K K +L+GPPG GK + + E +
Sbjct: 8 VAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF 67
Query: 61 LATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGI--IDEAMKKPSCQKGFILDGF 118
LA V LG ++ K +V I ID KK S + GF
Sbjct: 68 LAMAGAEFVEVIGG--LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRST----TMSGF 121
Query: 119 PRTEVQAQKLDEML 132
TE + Q L+++L
Sbjct: 122 SNTE-EEQTLNQLL 134
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of
Human Tap1
Length = 260
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56
+L+ + +P + LVGP GSGK T + ++++ Y
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 67
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 36 ILVGPPGSGKGTQSPIIKDE--YCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELV 91
+L GPPG GK T + ++ E Y + D V +KT L K A+D +V
Sbjct: 81 MLYGPPGIGKTTAAHLVAQELGYDILEQNASD-----VRSKTLLNAGVKNALDNMSVV 133
>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
Clostridium Acetobutylicum
Length = 385
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 53 KDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD 86
+D+Y +C L + AAV LG K K+A+D
Sbjct: 334 EDKYIVCMLKENKIDAAAVIGDVSLGTKLKKAID 367
>pdb|2OO6|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
pdb|3GO2|A Chain A, Crystal Structure Of Putative L-alanine-dl-glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium
Length = 409
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 152 LEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVSR 186
L +R+ W H + R H KF P V +D V R
Sbjct: 115 LRDRVPVYWSHCPTWRINHPKFFGPPVTDLDGVKR 149
>pdb|3SN0|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium And Fumarate
pdb|3SN1|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium And Tartrate
pdb|3SN4|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium And Alpha- Ketoglutarate
Length = 409
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 152 LEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVSR 186
L +R+ W H + R H KF P V +D V R
Sbjct: 115 LRDRVPVYWSHCPTWRINHPKFFGPPVTDLDGVKR 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,140,073
Number of Sequences: 62578
Number of extensions: 251393
Number of successful extensions: 960
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 869
Number of HSP's gapped (non-prelim): 68
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)