Query 029307
Match_columns 195
No_of_seqs 111 out of 1267
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 10:49:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02674 adenylate kinase 100.0 6.3E-37 1.4E-41 240.9 23.0 192 3-194 2-195 (244)
2 PRK14529 adenylate kinase; Pro 100.0 3.5E-31 7.6E-36 206.1 18.1 160 33-193 1-164 (223)
3 PRK00279 adk adenylate kinase; 100.0 7.4E-30 1.6E-34 199.0 19.8 159 33-191 1-159 (215)
4 TIGR01351 adk adenylate kinase 100.0 1.7E-29 3.8E-34 196.2 19.5 156 35-193 2-160 (210)
5 PRK14526 adenylate kinase; Pro 100.0 3.7E-29 7.9E-34 194.0 18.2 153 33-190 1-153 (211)
6 PLN02459 probable adenylate ki 100.0 2.5E-28 5.4E-33 193.1 18.5 138 30-172 27-166 (261)
7 PTZ00088 adenylate kinase 1; P 100.0 6.1E-28 1.3E-32 189.2 19.2 153 30-187 4-166 (229)
8 PRK14530 adenylate kinase; Pro 99.9 1.2E-25 2.5E-30 175.4 18.7 149 33-190 4-157 (215)
9 KOG3079 Uridylate kinase/adeny 99.9 1.8E-25 4E-30 165.6 16.0 131 29-162 5-136 (195)
10 KOG3078 Adenylate kinase [Nucl 99.9 7E-26 1.5E-30 175.2 14.4 155 31-189 14-168 (235)
11 PRK13808 adenylate kinase; Pro 99.9 4.8E-25 1E-29 180.0 16.9 129 33-161 1-129 (333)
12 PRK14532 adenylate kinase; Pro 99.9 8.8E-25 1.9E-29 166.9 17.4 129 33-161 1-129 (188)
13 PF00406 ADK: Adenylate kinase 99.9 1.1E-24 2.4E-29 160.9 15.8 122 37-158 1-122 (151)
14 cd01428 ADK Adenylate kinase ( 99.9 3.3E-24 7.2E-29 164.1 18.9 137 34-171 1-137 (194)
15 PRK14531 adenylate kinase; Pro 99.9 5.9E-24 1.3E-28 161.9 16.9 128 33-161 3-130 (183)
16 PRK14528 adenylate kinase; Pro 99.9 1.1E-23 2.4E-28 160.8 17.5 130 33-162 2-131 (186)
17 TIGR01359 UMP_CMP_kin_fam UMP- 99.9 3.2E-23 7E-28 157.4 16.7 126 34-161 1-126 (183)
18 PLN02842 nucleotide kinase 99.9 5.6E-23 1.2E-27 175.4 17.7 142 36-181 1-143 (505)
19 PRK02496 adk adenylate kinase; 99.9 1.1E-22 2.5E-27 154.8 17.7 129 33-161 2-130 (184)
20 PRK14527 adenylate kinase; Pro 99.9 9.6E-23 2.1E-27 156.1 17.4 131 30-161 4-134 (191)
21 COG0563 Adk Adenylate kinase a 99.9 1.4E-22 3E-27 153.2 16.3 129 33-161 1-129 (178)
22 PLN02200 adenylate kinase fami 99.9 1.5E-22 3.3E-27 159.5 17.0 129 29-161 40-168 (234)
23 TIGR01360 aden_kin_iso1 adenyl 99.9 3.1E-20 6.7E-25 141.3 17.2 125 32-160 3-128 (188)
24 PRK01184 hypothetical protein; 99.6 1.7E-14 3.7E-19 109.6 15.1 118 33-160 2-125 (184)
25 PF13671 AAA_33: AAA domain; P 99.6 5.6E-15 1.2E-19 107.5 9.1 119 34-163 1-122 (143)
26 COG1102 Cmk Cytidylate kinase 99.6 5.1E-14 1.1E-18 102.8 12.5 112 33-160 1-112 (179)
27 PRK08118 topology modulation p 99.6 1.9E-14 4.2E-19 107.9 10.6 100 33-161 2-101 (167)
28 PRK08356 hypothetical protein; 99.6 1.6E-14 3.4E-19 111.0 10.3 121 30-162 3-138 (195)
29 PRK06217 hypothetical protein; 99.6 8.4E-15 1.8E-19 111.4 8.5 106 33-162 2-107 (183)
30 PRK03839 putative kinase; Prov 99.6 2E-14 4.4E-19 108.9 9.7 101 33-160 1-101 (180)
31 PRK06762 hypothetical protein; 99.6 1.2E-13 2.7E-18 103.2 13.5 115 32-161 2-118 (166)
32 PHA02530 pseT polynucleotide k 99.5 4.8E-14 1E-18 115.0 11.1 126 32-164 2-128 (300)
33 PRK14730 coaE dephospho-CoA ki 99.5 9.8E-14 2.1E-18 106.6 11.0 118 33-160 2-147 (195)
34 KOG3347 Predicted nucleotide k 99.5 1.6E-13 3.5E-18 98.9 9.3 110 32-162 7-116 (176)
35 cd02021 GntK Gluconate kinase 99.5 5E-13 1.1E-17 98.2 11.4 116 34-162 1-121 (150)
36 PRK13973 thymidylate kinase; P 99.5 1.9E-12 4.1E-17 100.8 14.4 124 32-161 3-151 (213)
37 PRK00081 coaE dephospho-CoA ki 99.5 2.3E-13 5E-18 104.5 8.3 117 33-160 3-146 (194)
38 PRK13949 shikimate kinase; Pro 99.5 2.2E-12 4.8E-17 96.9 13.1 108 34-159 3-114 (169)
39 PRK07261 topology modulation p 99.5 3.9E-13 8.4E-18 101.2 9.0 101 33-161 1-101 (171)
40 TIGR02173 cyt_kin_arch cytidyl 99.4 1.1E-12 2.4E-17 98.2 10.5 111 33-160 1-113 (171)
41 PRK00625 shikimate kinase; Pro 99.4 1.6E-12 3.5E-17 98.0 11.3 116 33-161 1-118 (173)
42 cd02022 DPCK Dephospho-coenzym 99.4 8E-13 1.7E-17 100.2 9.7 116 34-160 1-143 (179)
43 PRK04182 cytidylate kinase; Pr 99.4 1E-12 2.2E-17 99.1 9.6 113 33-160 1-113 (180)
44 TIGR01663 PNK-3'Pase polynucle 99.4 3.5E-12 7.5E-17 110.6 13.7 136 29-192 366-510 (526)
45 PRK04040 adenylate kinase; Pro 99.4 3.4E-12 7.4E-17 97.5 11.8 123 32-158 2-130 (188)
46 COG0237 CoaE Dephospho-CoA kin 99.4 1.2E-12 2.6E-17 100.7 9.1 54 32-86 2-55 (201)
47 COG1936 Predicted nucleotide k 99.4 6.8E-13 1.5E-17 98.1 7.3 106 33-162 1-106 (180)
48 COG0703 AroK Shikimate kinase 99.4 6.1E-12 1.3E-16 93.7 11.7 110 33-159 3-115 (172)
49 KOG3354 Gluconate kinase [Carb 99.4 6.7E-13 1.5E-17 96.3 6.1 131 32-173 12-152 (191)
50 COG0283 Cmk Cytidylate kinase 99.4 3.4E-12 7.5E-17 97.6 9.8 152 33-195 5-196 (222)
51 TIGR00152 dephospho-CoA kinase 99.4 1.4E-12 3E-17 99.6 7.5 117 34-160 1-145 (188)
52 PF01121 CoaE: Dephospho-CoA k 99.4 1.3E-12 2.9E-17 99.0 7.2 117 33-160 1-144 (180)
53 PRK14734 coaE dephospho-CoA ki 99.4 3E-12 6.6E-17 98.7 8.8 117 33-160 2-147 (200)
54 PRK06547 hypothetical protein; 99.4 2.5E-12 5.4E-17 96.9 8.0 127 29-162 12-141 (172)
55 COG1428 Deoxynucleoside kinase 99.4 6.4E-12 1.4E-16 95.9 10.2 30 32-61 4-33 (216)
56 TIGR03574 selen_PSTK L-seryl-t 99.3 1.4E-11 2.9E-16 98.1 11.6 113 34-161 1-118 (249)
57 cd00464 SK Shikimate kinase (S 99.3 3.8E-11 8.2E-16 88.3 12.9 109 35-160 2-113 (154)
58 PF13207 AAA_17: AAA domain; P 99.3 4.5E-13 9.7E-18 94.8 2.4 107 34-160 1-111 (121)
59 PLN02422 dephospho-CoA kinase 99.3 1.3E-11 2.8E-16 96.9 10.5 116 34-160 3-147 (232)
60 PRK08233 hypothetical protein; 99.3 2.6E-12 5.6E-17 97.1 6.2 116 31-161 2-120 (182)
61 PRK13948 shikimate kinase; Pro 99.3 3.7E-11 8.1E-16 91.2 12.1 111 30-158 8-122 (182)
62 TIGR01313 therm_gnt_kin carboh 99.3 2.4E-11 5.2E-16 90.5 10.7 109 35-161 1-116 (163)
63 PRK13975 thymidylate kinase; P 99.3 3.3E-11 7.2E-16 92.3 11.5 115 33-160 3-135 (196)
64 PRK13947 shikimate kinase; Pro 99.3 2.7E-11 5.9E-16 90.8 10.8 111 34-162 3-117 (171)
65 PRK13946 shikimate kinase; Pro 99.3 8.3E-11 1.8E-15 89.5 13.6 116 31-162 9-126 (184)
66 cd02020 CMPK Cytidine monophos 99.3 2E-12 4.4E-17 94.2 4.4 104 34-160 1-104 (147)
67 PRK14733 coaE dephospho-CoA ki 99.3 1.5E-11 3.2E-16 94.9 9.3 120 31-160 5-150 (204)
68 PLN02924 thymidylate kinase 99.3 1.5E-11 3.3E-16 96.1 9.5 124 29-157 13-154 (220)
69 PRK14731 coaE dephospho-CoA ki 99.3 1.6E-11 3.4E-16 95.3 9.4 121 31-161 4-156 (208)
70 cd01673 dNK Deoxyribonucleosid 99.3 5.6E-11 1.2E-15 90.9 12.0 121 34-161 1-147 (193)
71 PTZ00451 dephospho-CoA kinase; 99.3 2.3E-11 5E-16 96.2 9.9 52 33-84 2-53 (244)
72 PRK13974 thymidylate kinase; P 99.3 1.9E-11 4.1E-16 95.2 9.1 130 32-162 3-158 (212)
73 PRK00698 tmk thymidylate kinas 99.3 1.8E-11 3.9E-16 94.2 8.9 122 32-160 3-149 (205)
74 PRK00131 aroK shikimate kinase 99.3 4.7E-11 1E-15 89.4 10.8 115 31-161 3-119 (175)
75 TIGR00041 DTMP_kinase thymidyl 99.3 2E-11 4.3E-16 93.5 8.8 119 32-161 3-150 (195)
76 PRK03731 aroL shikimate kinase 99.3 1.1E-10 2.4E-15 87.6 12.6 111 33-160 3-115 (171)
77 PRK14732 coaE dephospho-CoA ki 99.3 2.2E-11 4.8E-16 93.6 8.7 116 34-160 1-143 (196)
78 PF01583 APS_kinase: Adenylyls 99.3 5.1E-11 1.1E-15 87.9 10.0 138 31-192 1-147 (156)
79 cd00227 CPT Chloramphenicol (C 99.3 1.2E-10 2.7E-15 87.8 12.2 123 32-160 2-132 (175)
80 PRK12339 2-phosphoglycerate ki 99.3 1.3E-10 2.8E-15 89.4 12.3 122 31-162 2-143 (197)
81 COG0125 Tmk Thymidylate kinase 99.2 2.9E-10 6.4E-15 87.9 13.8 129 31-162 2-151 (208)
82 COG0645 Predicted kinase [Gene 99.2 9.9E-11 2.1E-15 86.5 10.3 122 33-161 2-126 (170)
83 cd02030 NDUO42 NADH:Ubiquinone 99.2 1.1E-10 2.4E-15 91.3 11.1 128 34-161 1-165 (219)
84 PRK06696 uridine kinase; Valid 99.2 5.9E-11 1.3E-15 93.0 8.9 52 16-67 5-62 (223)
85 PRK03333 coaE dephospho-CoA ki 99.2 8.5E-11 1.9E-15 99.4 10.1 116 34-160 3-145 (395)
86 PRK05057 aroK shikimate kinase 99.2 4.7E-10 1E-14 84.5 12.9 113 32-161 4-119 (172)
87 TIGR00017 cmk cytidylate kinas 99.2 5.6E-11 1.2E-15 92.8 8.0 38 33-70 3-40 (217)
88 cd01672 TMPK Thymidine monopho 99.2 1.4E-09 3E-14 83.0 15.6 123 33-162 1-149 (200)
89 PRK07667 uridine kinase; Provi 99.2 5.5E-11 1.2E-15 91.2 7.6 121 30-160 15-160 (193)
90 COG3265 GntK Gluconate kinase 99.2 3.9E-11 8.5E-16 86.6 6.2 126 38-178 1-130 (161)
91 PLN02199 shikimate kinase 99.2 2.1E-10 4.6E-15 92.4 11.1 109 32-158 102-214 (303)
92 PRK14021 bifunctional shikimat 99.2 3E-10 6.4E-15 99.7 12.9 118 30-160 4-124 (542)
93 PF06414 Zeta_toxin: Zeta toxi 99.2 1.1E-11 2.4E-16 95.5 3.2 122 30-161 13-143 (199)
94 COG0529 CysC Adenylylsulfate k 99.2 7E-10 1.5E-14 82.5 12.3 113 28-155 19-137 (197)
95 PRK08154 anaerobic benzoate ca 99.2 4.9E-10 1.1E-14 92.0 12.6 119 29-161 130-249 (309)
96 COG4088 Predicted nucleotide k 99.2 5.4E-10 1.2E-14 85.1 11.4 116 33-161 2-124 (261)
97 KOG3220 Similar to bacterial d 99.2 1.2E-10 2.7E-15 88.0 7.7 117 34-160 3-147 (225)
98 PRK07933 thymidylate kinase; V 99.2 1.7E-10 3.7E-15 89.9 8.7 122 33-161 1-155 (213)
99 COG0572 Udk Uridine kinase [Nu 99.1 1.1E-10 2.4E-15 90.1 6.8 122 31-168 7-156 (218)
100 PRK05541 adenylylsulfate kinas 99.1 1.5E-09 3.2E-14 81.9 12.2 112 30-158 5-121 (176)
101 COG4639 Predicted kinase [Gene 99.1 1.4E-09 3.1E-14 79.2 11.4 113 33-158 3-116 (168)
102 PRK05480 uridine/cytidine kina 99.1 3.1E-10 6.7E-15 88.0 8.6 122 29-161 3-148 (209)
103 cd02024 NRK1 Nicotinamide ribo 99.1 2.1E-10 4.4E-15 87.4 7.3 35 34-68 1-36 (187)
104 PRK11860 bifunctional 3-phosph 99.1 4.6E-10 1E-14 100.7 10.1 40 31-70 441-480 (661)
105 cd02027 APSK Adenosine 5'-phos 99.1 1.3E-09 2.7E-14 80.3 10.7 108 34-158 1-116 (149)
106 PRK05537 bifunctional sulfate 99.1 2.2E-09 4.7E-14 94.6 13.3 126 15-157 375-510 (568)
107 PRK09825 idnK D-gluconate kina 99.1 9.4E-10 2E-14 83.2 9.3 121 32-170 3-130 (176)
108 TIGR00235 udk uridine kinase. 99.1 2.8E-10 6.1E-15 88.1 6.5 122 29-161 3-148 (207)
109 PRK13976 thymidylate kinase; P 99.1 1.9E-09 4E-14 83.7 10.8 120 33-160 1-146 (209)
110 PRK13477 bifunctional pantoate 99.1 2.2E-09 4.8E-14 93.0 12.2 41 30-70 282-322 (512)
111 PF13238 AAA_18: AAA domain; P 99.0 1.2E-10 2.7E-15 82.7 3.1 110 35-162 1-115 (129)
112 TIGR03575 selen_PSTK_euk L-ser 99.0 5E-09 1.1E-13 86.6 11.7 127 34-161 1-177 (340)
113 PTZ00301 uridine kinase; Provi 99.0 8.3E-10 1.8E-14 85.7 6.3 117 33-162 4-150 (210)
114 PRK10078 ribose 1,5-bisphospho 99.0 1.5E-09 3.2E-14 82.7 7.5 118 33-160 3-132 (186)
115 TIGR00455 apsK adenylylsulfate 99.0 1.1E-08 2.3E-13 77.7 12.2 109 30-155 16-132 (184)
116 PRK13951 bifunctional shikimat 99.0 3.6E-09 7.8E-14 91.7 10.3 109 33-159 1-112 (488)
117 PF08433 KTI12: Chromatin asso 99.0 7E-09 1.5E-13 83.4 11.2 111 34-162 3-122 (270)
118 PRK12269 bifunctional cytidyla 99.0 3.7E-09 8E-14 96.6 10.4 40 33-72 35-74 (863)
119 PRK00023 cmk cytidylate kinase 99.0 6E-10 1.3E-14 87.5 4.2 39 32-70 4-42 (225)
120 PF01202 SKI: Shikimate kinase 98.9 3.9E-09 8.4E-14 78.4 8.1 104 41-161 1-107 (158)
121 PRK03846 adenylylsulfate kinas 98.9 1E-08 2.3E-13 78.8 10.7 110 29-155 21-138 (198)
122 PRK00889 adenylylsulfate kinas 98.9 1.6E-08 3.5E-13 76.1 11.4 108 31-156 3-117 (175)
123 PF07931 CPT: Chloramphenicol 98.9 1.1E-08 2.5E-13 76.9 10.3 120 33-166 2-136 (174)
124 PF02223 Thymidylate_kin: Thym 98.9 4.5E-09 9.8E-14 79.9 8.1 117 37-161 1-141 (186)
125 KOG3877 NADH:ubiquinone oxidor 98.9 2.1E-08 4.5E-13 79.6 11.8 128 30-164 69-243 (393)
126 PHA03132 thymidine kinase; Pro 98.9 1.3E-08 2.7E-13 89.1 11.6 127 32-161 257-424 (580)
127 PRK11545 gntK gluconate kinase 98.9 6.6E-09 1.4E-13 77.6 8.4 106 38-162 1-114 (163)
128 PRK12338 hypothetical protein; 98.9 2.7E-08 5.9E-13 81.4 12.6 128 31-162 3-153 (319)
129 PRK09518 bifunctional cytidyla 98.9 1.2E-08 2.7E-13 92.4 10.0 38 34-71 3-40 (712)
130 PRK05416 glmZ(sRNA)-inactivati 98.9 6.7E-08 1.5E-12 78.4 13.2 99 32-159 6-106 (288)
131 COG0194 Gmk Guanylate kinase [ 98.9 8.5E-09 1.8E-13 77.5 7.3 119 31-163 3-139 (191)
132 smart00072 GuKc Guanylate kina 98.9 1.8E-09 3.9E-14 82.2 3.8 119 32-161 2-137 (184)
133 COG2019 AdkA Archaeal adenylat 98.9 1.8E-08 3.9E-13 74.3 8.8 114 32-157 4-128 (189)
134 PF01591 6PF2K: 6-phosphofruct 98.9 1.1E-07 2.3E-12 74.3 13.6 120 30-158 10-143 (222)
135 cd02028 UMPK_like Uridine mono 98.9 5.7E-09 1.2E-13 79.1 6.3 121 34-170 1-149 (179)
136 PRK05439 pantothenate kinase; 98.9 2E-08 4.3E-13 82.1 9.8 39 29-67 83-128 (311)
137 cd02023 UMPK Uridine monophosp 98.9 9E-09 1.9E-13 79.1 7.2 34 34-67 1-37 (198)
138 cd02025 PanK Pantothenate kina 98.8 1.9E-08 4E-13 78.8 9.0 34 34-67 1-41 (220)
139 PLN02348 phosphoribulokinase 98.8 1.6E-08 3.4E-13 84.6 9.0 29 29-57 46-74 (395)
140 TIGR00554 panK_bact pantothena 98.8 2.9E-08 6.2E-13 80.6 9.7 39 29-67 59-104 (290)
141 PRK14737 gmk guanylate kinase; 98.8 1.8E-08 4E-13 76.8 7.8 120 31-161 3-139 (186)
142 PF00485 PRK: Phosphoribulokin 98.8 2.1E-09 4.6E-14 82.4 2.7 118 34-167 1-154 (194)
143 PRK09270 nucleoside triphospha 98.8 5.8E-08 1.3E-12 76.4 10.3 29 29-57 30-58 (229)
144 PRK15453 phosphoribulokinase; 98.8 1.9E-08 4.1E-13 80.8 7.0 38 30-67 3-45 (290)
145 TIGR02322 phosphon_PhnN phosph 98.8 6.5E-08 1.4E-12 73.0 9.5 25 33-57 2-26 (179)
146 PRK07429 phosphoribulokinase; 98.8 7.9E-08 1.7E-12 79.4 10.6 38 29-66 5-45 (327)
147 PRK05506 bifunctional sulfate 98.8 5.9E-08 1.3E-12 87.0 10.6 110 29-156 457-575 (632)
148 cd02019 NK Nucleoside/nucleoti 98.7 4.3E-08 9.4E-13 62.6 6.4 23 34-56 1-23 (69)
149 PRK14738 gmk guanylate kinase; 98.7 3.8E-08 8.1E-13 76.3 7.3 27 29-55 10-36 (206)
150 PRK04220 2-phosphoglycerate ki 98.7 2.2E-07 4.8E-12 75.5 11.8 124 30-162 90-238 (301)
151 PF03668 ATP_bind_2: P-loop AT 98.7 4.8E-07 1E-11 72.7 13.5 103 34-165 3-109 (284)
152 PHA00729 NTP-binding motif con 98.7 1.5E-07 3.3E-12 73.5 10.4 112 33-161 18-141 (226)
153 TIGR03263 guanyl_kin guanylate 98.6 6E-08 1.3E-12 73.2 5.8 119 33-161 2-135 (180)
154 PRK00300 gmk guanylate kinase; 98.6 8E-07 1.7E-11 68.5 11.0 28 30-57 3-30 (205)
155 KOG3308 Uncharacterized protei 98.6 2E-07 4.4E-12 70.8 7.3 120 33-161 5-150 (225)
156 PLN02165 adenylate isopentenyl 98.5 5.8E-07 1.2E-11 74.0 9.2 40 27-66 38-77 (334)
157 cd02029 PRK_like Phosphoribulo 98.5 1.8E-07 3.9E-12 74.7 6.0 35 34-68 1-40 (277)
158 PRK12337 2-phosphoglycerate ki 98.5 2E-06 4.2E-11 73.6 12.5 124 30-162 253-407 (475)
159 cd02026 PRK Phosphoribulokinas 98.5 7.5E-07 1.6E-11 71.9 9.0 34 34-67 1-37 (273)
160 KOG3327 Thymidylate kinase/ade 98.5 8E-07 1.7E-11 66.7 8.0 120 30-154 3-140 (208)
161 COG1660 Predicted P-loop-conta 98.5 3.5E-06 7.5E-11 66.5 11.2 104 33-167 2-112 (286)
162 PF08303 tRNA_lig_kinase: tRNA 98.4 1.5E-06 3.3E-11 64.2 8.3 107 35-164 2-123 (168)
163 COG1072 CoaA Panthothenate kin 98.4 3.8E-07 8.1E-12 72.6 4.6 28 29-56 79-106 (283)
164 PLN02318 phosphoribulokinase/u 98.4 1.7E-06 3.8E-11 75.9 8.6 38 29-66 62-100 (656)
165 PRK06761 hypothetical protein; 98.3 6.2E-07 1.4E-11 72.4 4.5 32 32-63 3-34 (282)
166 KOG0635 Adenosine 5'-phosphosu 98.2 2.8E-06 6.1E-11 61.9 5.8 34 23-56 22-55 (207)
167 KOG4235 Mitochondrial thymidin 98.2 1.7E-05 3.6E-10 60.2 9.9 35 133-167 148-182 (244)
168 PF00004 AAA: ATPase family as 98.2 1.2E-06 2.6E-11 62.2 3.6 29 35-63 1-29 (132)
169 PHA03136 thymidine kinase; Pro 98.2 4.9E-05 1.1E-09 63.4 13.5 28 137-164 190-217 (378)
170 KOG0730 AAA+-type ATPase [Post 98.2 1E-05 2.2E-10 71.1 9.6 125 30-159 466-613 (693)
171 PF00625 Guanylate_kin: Guanyl 98.2 1.5E-06 3.2E-11 66.0 3.5 26 32-57 2-27 (183)
172 PRK00091 miaA tRNA delta(2)-is 98.1 2.6E-06 5.6E-11 69.8 4.2 36 31-66 3-38 (307)
173 PTZ00322 6-phosphofructo-2-kin 98.1 2.9E-05 6.4E-10 70.1 11.1 116 32-160 215-347 (664)
174 PLN02772 guanylate kinase 98.1 1.9E-05 4.1E-10 66.4 8.9 26 31-56 134-159 (398)
175 PHA02575 1 deoxynucleoside mon 98.1 6.4E-06 1.4E-10 64.1 5.0 39 33-72 1-40 (227)
176 smart00763 AAA_PrkA PrkA AAA d 98.1 7.5E-06 1.6E-10 68.1 5.7 29 30-58 76-104 (361)
177 PF13189 Cytidylate_kin2: Cyti 98.1 2.6E-05 5.6E-10 59.1 8.1 37 34-71 1-37 (179)
178 KOG0744 AAA+-type ATPase [Post 98.1 4.7E-05 1E-09 62.2 9.9 25 34-58 179-203 (423)
179 TIGR00150 HI0065_YjeE ATPase, 98.0 1E-05 2.2E-10 58.2 5.5 40 20-59 10-49 (133)
180 KOG1969 DNA replication checkp 98.0 1.9E-05 4.1E-10 70.3 7.9 35 29-63 323-357 (877)
181 PF13173 AAA_14: AAA domain 98.0 0.00011 2.3E-09 52.5 10.6 98 33-155 3-104 (128)
182 PRK12724 flagellar biosynthesi 98.0 0.00011 2.3E-09 62.6 11.9 110 31-149 222-344 (432)
183 PF05191 ADK_lid: Adenylate ki 98.0 2.1E-06 4.5E-11 47.4 1.1 32 159-190 1-32 (36)
184 PF05496 RuvB_N: Holliday junc 98.0 1.9E-05 4.1E-10 61.6 6.7 56 5-60 19-78 (233)
185 TIGR02881 spore_V_K stage V sp 98.0 5.6E-05 1.2E-09 60.6 9.7 26 31-56 41-66 (261)
186 PF13521 AAA_28: AAA domain; P 98.0 4.2E-06 9.2E-11 62.2 3.0 36 34-72 1-36 (163)
187 PRK12402 replication factor C 98.0 0.00039 8.5E-09 57.4 14.7 40 15-56 21-60 (337)
188 COG2074 2-phosphoglycerate kin 98.0 1.1E-05 2.5E-10 63.5 5.0 56 17-72 69-129 (299)
189 PLN02840 tRNA dimethylallyltra 98.0 8.4E-06 1.8E-10 69.2 4.4 36 30-65 19-54 (421)
190 PRK05800 cobU adenosylcobinami 97.9 7E-06 1.5E-10 61.7 3.1 33 33-65 2-36 (170)
191 PHA02544 44 clamp loader, smal 97.9 0.00026 5.7E-09 58.0 12.5 32 29-60 40-71 (316)
192 COG1618 Predicted nucleotide k 97.9 1.1E-05 2.3E-10 59.6 3.7 29 31-59 4-32 (179)
193 PRK14962 DNA polymerase III su 97.9 0.00026 5.6E-09 61.5 12.8 30 29-58 33-62 (472)
194 PF13401 AAA_22: AAA domain; P 97.9 2.5E-05 5.5E-10 55.4 5.4 84 31-120 3-98 (131)
195 smart00382 AAA ATPases associa 97.9 1.1E-05 2.3E-10 57.0 3.5 27 32-58 2-28 (148)
196 PF01745 IPT: Isopentenyl tran 97.9 2.7E-05 5.9E-10 60.1 5.8 83 34-119 3-99 (233)
197 TIGR03707 PPK2_P_aer polyphosp 97.9 0.00018 4E-09 56.5 10.4 115 29-165 28-162 (230)
198 PRK12377 putative replication 97.9 0.00025 5.4E-09 56.5 11.3 104 33-157 102-215 (248)
199 PRK14956 DNA polymerase III su 97.9 0.00018 3.9E-09 62.2 11.1 30 30-59 38-67 (484)
200 PLN02748 tRNA dimethylallyltra 97.9 1.4E-05 3E-10 68.9 4.2 36 30-65 20-55 (468)
201 TIGR00174 miaA tRNA isopenteny 97.9 1.2E-05 2.6E-10 65.2 3.6 32 34-65 1-32 (287)
202 PRK12323 DNA polymerase III su 97.9 0.0002 4.4E-09 63.9 11.4 30 29-58 35-64 (700)
203 KOG0733 Nuclear AAA ATPase (VC 97.9 8.5E-05 1.8E-09 65.2 8.8 113 32-152 545-683 (802)
204 PF03215 Rad17: Rad17 cell cyc 97.9 2.5E-05 5.4E-10 68.3 5.7 42 21-62 34-75 (519)
205 CHL00181 cbbX CbbX; Provisiona 97.9 0.0001 2.2E-09 60.1 8.7 40 31-70 58-106 (287)
206 PRK09087 hypothetical protein; 97.9 0.00018 3.9E-09 56.5 9.9 35 32-66 44-78 (226)
207 KOG3062 RNA polymerase II elon 97.9 4.1E-05 8.8E-10 59.4 5.9 119 33-166 2-129 (281)
208 PRK12723 flagellar biosynthesi 97.8 0.0003 6.5E-09 59.5 11.7 26 31-56 173-198 (388)
209 COG4185 Uncharacterized protei 97.8 0.00016 3.4E-09 53.4 8.6 117 32-162 2-120 (187)
210 PRK14961 DNA polymerase III su 97.8 0.0004 8.6E-09 58.4 12.2 44 14-58 21-64 (363)
211 PRK08116 hypothetical protein; 97.8 0.00068 1.5E-08 54.6 13.0 38 33-70 115-157 (268)
212 PRK14964 DNA polymerase III su 97.8 0.00025 5.4E-09 61.7 11.0 31 29-59 32-62 (491)
213 KOG0733 Nuclear AAA ATPase (VC 97.8 0.00014 3E-09 63.9 9.3 32 32-63 223-254 (802)
214 TIGR00390 hslU ATP-dependent p 97.8 1.9E-05 4.2E-10 66.9 4.0 34 31-64 46-79 (441)
215 PLN00020 ribulose bisphosphate 97.8 4.1E-05 9E-10 63.9 5.5 52 18-69 132-187 (413)
216 KOG2004 Mitochondrial ATP-depe 97.8 5E-05 1.1E-09 67.6 6.3 37 29-65 435-473 (906)
217 PRK07003 DNA polymerase III su 97.8 0.00039 8.5E-09 63.0 11.9 31 29-59 35-65 (830)
218 PF07728 AAA_5: AAA domain (dy 97.8 2.4E-05 5.2E-10 56.4 3.6 28 35-62 2-29 (139)
219 PRK14958 DNA polymerase III su 97.8 0.0006 1.3E-08 59.8 12.4 44 15-59 22-65 (509)
220 PRK07764 DNA polymerase III su 97.8 0.00027 5.9E-09 65.1 10.7 31 29-59 34-64 (824)
221 cd00009 AAA The AAA+ (ATPases 97.8 8.2E-05 1.8E-09 52.9 6.0 25 32-56 19-43 (151)
222 PRK06645 DNA polymerase III su 97.7 0.00048 1E-08 60.3 11.6 32 29-60 40-71 (507)
223 PRK05201 hslU ATP-dependent pr 97.7 2.9E-05 6.3E-10 65.9 3.9 33 32-64 50-82 (443)
224 TIGR03709 PPK2_rel_1 polyphosp 97.7 0.00045 9.8E-09 55.4 10.4 114 30-165 54-187 (264)
225 PRK14951 DNA polymerase III su 97.7 0.00055 1.2E-08 61.2 11.6 32 28-59 34-65 (618)
226 TIGR03708 poly_P_AMP_trns poly 97.7 0.00056 1.2E-08 59.4 11.4 113 29-166 37-172 (493)
227 PLN02796 D-glycerate 3-kinase 97.7 3.2E-05 6.9E-10 64.1 3.6 38 30-67 98-140 (347)
228 PRK14960 DNA polymerase III su 97.7 0.00082 1.8E-08 60.2 12.4 31 29-59 34-64 (702)
229 COG3709 Uncharacterized compon 97.7 0.00014 3E-09 53.8 6.2 26 32-57 5-30 (192)
230 PLN03046 D-glycerate 3-kinase; 97.7 5.4E-05 1.2E-09 64.2 4.6 38 30-67 210-252 (460)
231 COG0324 MiaA tRNA delta(2)-iso 97.7 5.7E-05 1.2E-09 61.6 4.6 36 31-66 2-37 (308)
232 KOG0735 AAA+-type ATPase [Post 97.7 0.00029 6.3E-09 62.9 9.1 115 34-157 703-844 (952)
233 TIGR02640 gas_vesic_GvpN gas v 97.7 5.3E-05 1.1E-09 60.8 4.2 44 14-61 7-50 (262)
234 TIGR01223 Pmev_kin_anim phosph 97.6 0.0012 2.6E-08 49.6 10.8 113 34-157 1-133 (182)
235 PF02367 UPF0079: Uncharacteri 97.6 4.8E-05 1E-09 54.0 3.3 30 30-59 13-42 (123)
236 PRK08099 bifunctional DNA-bind 97.6 5.8E-05 1.3E-09 64.1 4.3 30 33-62 220-249 (399)
237 cd00071 GMPK Guanosine monopho 97.6 4.4E-05 9.5E-10 55.3 3.0 24 34-57 1-24 (137)
238 PF03308 ArgK: ArgK protein; 97.6 8.7E-05 1.9E-09 59.0 4.8 27 30-56 27-53 (266)
239 PRK14952 DNA polymerase III su 97.6 0.00092 2E-08 59.5 11.5 31 29-59 32-62 (584)
240 PRK14949 DNA polymerase III su 97.6 0.00058 1.3E-08 63.0 10.4 30 30-59 36-65 (944)
241 PF03266 NTPase_1: NTPase; In 97.6 7.3E-05 1.6E-09 56.1 3.9 23 34-56 1-23 (168)
242 PRK14963 DNA polymerase III su 97.6 0.0013 2.7E-08 57.7 12.0 30 29-58 33-62 (504)
243 PRK09169 hypothetical protein; 97.6 0.00073 1.6E-08 66.7 11.3 107 33-159 2111-2220(2316)
244 PRK06526 transposase; Provisio 97.6 0.001 2.2E-08 53.2 10.5 25 32-56 98-122 (254)
245 PRK09435 membrane ATPase/prote 97.6 0.00012 2.6E-09 60.6 5.4 28 29-56 53-80 (332)
246 PF03029 ATP_bind_1: Conserved 97.6 5.1E-05 1.1E-09 60.1 2.8 21 37-57 1-21 (238)
247 PRK03992 proteasome-activating 97.6 7.9E-05 1.7E-09 63.2 4.1 39 30-68 163-203 (389)
248 TIGR01650 PD_CobS cobaltochela 97.6 7E-05 1.5E-09 61.7 3.6 31 33-63 65-95 (327)
249 COG1703 ArgK Putative periplas 97.6 0.00015 3.3E-09 58.6 5.4 28 29-56 48-75 (323)
250 PRK10646 ADP-binding protein; 97.6 0.00018 4E-09 53.0 5.4 40 19-58 15-54 (153)
251 PRK04195 replication factor C 97.6 0.00014 3.1E-09 63.3 5.7 33 31-63 38-70 (482)
252 TIGR03689 pup_AAA proteasome A 97.5 0.00029 6.3E-09 61.5 7.4 28 31-58 215-242 (512)
253 PRK08181 transposase; Validate 97.5 0.0014 3.1E-08 52.8 10.9 39 32-70 106-149 (269)
254 COG2256 MGS1 ATPase related to 97.5 0.00043 9.4E-09 58.1 8.0 31 33-63 49-79 (436)
255 PRK13342 recombination factor 97.5 0.0001 2.2E-09 63.0 4.5 33 31-63 35-67 (413)
256 TIGR02397 dnaX_nterm DNA polym 97.5 0.0022 4.8E-08 53.4 12.4 44 14-58 19-62 (355)
257 CHL00195 ycf46 Ycf46; Provisio 97.5 0.00015 3.4E-09 63.1 5.6 34 30-63 257-290 (489)
258 COG3896 Chloramphenicol 3-O-ph 97.5 0.0008 1.7E-08 49.7 8.4 129 29-160 20-161 (205)
259 PRK07952 DNA replication prote 97.5 0.00068 1.5E-08 53.9 8.8 112 33-164 100-221 (244)
260 PRK14729 miaA tRNA delta(2)-is 97.5 0.00013 2.8E-09 59.6 4.7 35 31-66 3-37 (300)
261 PF00448 SRP54: SRP54-type pro 97.5 8.3E-05 1.8E-09 57.2 3.5 25 32-56 1-25 (196)
262 cd00544 CobU Adenosylcobinamid 97.5 0.00024 5.1E-09 53.4 5.8 30 34-63 1-32 (169)
263 PRK14957 DNA polymerase III su 97.5 0.0011 2.4E-08 58.5 10.7 28 31-58 37-64 (546)
264 PRK00771 signal recognition pa 97.5 0.00062 1.3E-08 58.5 9.0 27 30-56 93-119 (437)
265 TIGR01242 26Sp45 26S proteasom 97.5 0.00011 2.4E-09 61.7 4.4 33 31-63 155-187 (364)
266 PF13191 AAA_16: AAA ATPase do 97.5 0.00017 3.6E-09 54.1 5.0 28 29-56 21-48 (185)
267 PRK14955 DNA polymerase III su 97.5 0.0016 3.6E-08 55.3 11.6 30 30-59 36-65 (397)
268 COG1222 RPT1 ATP-dependent 26S 97.5 0.00019 4.1E-09 59.4 5.5 48 31-78 184-233 (406)
269 PRK06835 DNA replication prote 97.5 0.0015 3.3E-08 54.2 10.9 104 33-156 184-297 (329)
270 PF03976 PPK2: Polyphosphate k 97.5 0.00012 2.7E-09 57.5 4.3 112 30-166 29-163 (228)
271 PRK08691 DNA polymerase III su 97.5 0.00067 1.5E-08 61.1 9.3 31 29-59 35-65 (709)
272 TIGR01243 CDC48 AAA family ATP 97.5 0.00064 1.4E-08 62.3 9.4 34 30-63 485-518 (733)
273 PHA03138 thymidine kinase; Pro 97.5 0.0014 3.1E-08 54.1 10.4 25 32-56 12-36 (340)
274 PRK14969 DNA polymerase III su 97.5 0.0012 2.5E-08 58.3 10.6 30 30-59 36-65 (527)
275 PTZ00454 26S protease regulato 97.5 0.00012 2.6E-09 62.2 4.3 34 30-63 177-210 (398)
276 COG0802 Predicted ATPase or ki 97.5 0.00025 5.5E-09 51.7 5.3 43 16-58 9-51 (149)
277 PF13245 AAA_19: Part of AAA d 97.5 0.00014 3.1E-09 47.2 3.6 25 32-56 10-35 (76)
278 PRK06921 hypothetical protein; 97.5 0.0024 5.2E-08 51.4 11.5 37 32-68 117-159 (266)
279 PHA03135 thymidine kinase; Pro 97.5 0.0055 1.2E-07 50.7 13.6 24 32-55 10-33 (343)
280 KOG0739 AAA+-type ATPase [Post 97.5 0.0016 3.5E-08 53.0 10.3 40 34-73 168-209 (439)
281 TIGR02880 cbbX_cfxQ probable R 97.5 0.0015 3.3E-08 53.1 10.4 24 33-56 59-82 (284)
282 TIGR00635 ruvB Holliday juncti 97.5 0.00024 5.2E-09 58.0 5.8 30 30-59 28-57 (305)
283 PRK07994 DNA polymerase III su 97.5 0.00088 1.9E-08 60.1 9.7 30 30-59 36-65 (647)
284 PRK10751 molybdopterin-guanine 97.5 0.00014 3E-09 54.8 4.0 28 30-57 4-31 (173)
285 PRK14965 DNA polymerase III su 97.5 0.0022 4.7E-08 57.2 12.1 43 16-59 23-65 (576)
286 PF00910 RNA_helicase: RNA hel 97.5 9.2E-05 2E-09 51.2 2.8 22 35-56 1-22 (107)
287 PF05729 NACHT: NACHT domain 97.5 0.00011 2.5E-09 53.8 3.5 23 34-56 2-24 (166)
288 COG4240 Predicted kinase [Gene 97.5 0.00016 3.5E-09 56.4 4.3 40 29-68 47-92 (300)
289 COG1126 GlnQ ABC-type polar am 97.5 0.00011 2.4E-09 56.9 3.4 25 30-54 26-50 (240)
290 TIGR01526 nadR_NMN_Atrans nico 97.5 0.00014 3E-09 60.3 4.2 30 33-62 163-192 (325)
291 COG0466 Lon ATP-dependent Lon 97.5 0.00021 4.5E-09 63.8 5.3 35 29-63 347-383 (782)
292 PRK15455 PrkA family serine pr 97.5 0.00019 4.1E-09 63.2 5.0 28 29-56 100-127 (644)
293 PRK08939 primosomal protein Dn 97.4 0.0061 1.3E-07 50.1 13.6 104 31-156 155-269 (306)
294 PLN03025 replication factor C 97.4 0.00019 4.1E-09 59.2 4.8 25 32-56 34-58 (319)
295 KOG1533 Predicted GTPase [Gene 97.4 0.00088 1.9E-08 52.5 8.0 23 34-56 4-26 (290)
296 TIGR00678 holB DNA polymerase 97.4 0.0056 1.2E-07 46.4 12.5 30 29-58 11-40 (188)
297 TIGR03420 DnaA_homol_Hda DnaA 97.4 0.00043 9.3E-09 53.9 6.5 37 30-66 36-77 (226)
298 KOG0737 AAA+-type ATPase [Post 97.4 0.0017 3.7E-08 53.9 10.1 34 30-63 125-158 (386)
299 KOG4238 Bifunctional ATP sulfu 97.4 0.00049 1.1E-08 57.1 6.8 110 34-156 52-167 (627)
300 KOG0731 AAA+-type ATPase conta 97.4 0.0022 4.7E-08 58.2 11.4 40 24-63 335-375 (774)
301 PRK00080 ruvB Holliday junctio 97.4 0.00029 6.3E-09 58.3 5.5 31 30-60 49-79 (328)
302 PRK14088 dnaA chromosomal repl 97.4 0.0042 9.2E-08 53.6 12.8 39 33-71 131-176 (440)
303 PRK08903 DnaA regulatory inact 97.4 0.00047 1E-08 53.9 6.4 36 31-66 41-81 (227)
304 PRK09111 DNA polymerase III su 97.4 0.0026 5.6E-08 56.9 11.7 44 16-60 31-74 (598)
305 KOG1970 Checkpoint RAD17-RFC c 97.4 0.00022 4.8E-09 61.9 4.8 31 32-62 110-140 (634)
306 COG1223 Predicted ATPase (AAA+ 97.4 0.0024 5.2E-08 51.1 10.1 44 31-74 150-195 (368)
307 PRK06620 hypothetical protein; 97.4 0.00015 3.2E-09 56.6 3.3 31 33-63 45-75 (214)
308 COG2255 RuvB Holliday junction 97.4 0.00017 3.6E-09 58.0 3.6 26 34-59 54-79 (332)
309 cd00820 PEPCK_HprK Phosphoenol 97.4 0.00018 3.9E-09 49.8 3.3 24 30-53 13-36 (107)
310 PRK05342 clpX ATP-dependent pr 97.4 0.00018 3.9E-09 61.4 4.1 31 33-63 109-139 (412)
311 PF06309 Torsin: Torsin; Inte 97.4 0.00047 1E-08 49.0 5.4 39 18-56 37-77 (127)
312 KOG2702 Predicted panthothenat 97.4 0.00066 1.4E-08 53.1 6.5 40 16-57 105-144 (323)
313 TIGR01241 FtsH_fam ATP-depende 97.4 0.0002 4.4E-09 62.6 4.2 34 30-63 86-119 (495)
314 PTZ00361 26 proteosome regulat 97.4 0.00022 4.7E-09 61.3 4.3 33 30-62 215-247 (438)
315 PRK09183 transposase/IS protei 97.4 0.0045 9.8E-08 49.6 11.6 37 31-67 101-142 (259)
316 TIGR00073 hypB hydrogenase acc 97.3 0.00035 7.5E-09 54.0 4.9 29 29-57 19-47 (207)
317 PF07724 AAA_2: AAA domain (Cd 97.3 0.00024 5.2E-09 53.4 3.8 26 33-58 4-29 (171)
318 PF07726 AAA_3: ATPase family 97.3 0.00012 2.5E-09 52.3 2.0 30 34-63 1-30 (131)
319 cd01131 PilT Pilus retraction 97.3 0.00021 4.5E-09 55.0 3.5 24 34-57 3-26 (198)
320 PRK13695 putative NTPase; Prov 97.3 0.00022 4.7E-09 53.6 3.6 24 33-56 1-24 (174)
321 cd00984 DnaB_C DnaB helicase C 97.3 0.0052 1.1E-07 48.3 11.6 35 29-63 10-50 (242)
322 TIGR00101 ureG urease accessor 97.3 0.00024 5.1E-09 54.8 3.7 25 32-56 1-25 (199)
323 COG4619 ABC-type uncharacteriz 97.3 0.00022 4.7E-09 53.4 3.3 26 30-55 27-52 (223)
324 TIGR00382 clpX endopeptidase C 97.3 0.00025 5.5E-09 60.4 4.1 31 33-63 117-147 (413)
325 PRK08084 DNA replication initi 97.3 0.00031 6.7E-09 55.5 4.3 34 32-65 45-83 (235)
326 PRK06893 DNA replication initi 97.3 0.00033 7.1E-09 55.1 4.4 32 33-64 40-76 (229)
327 TIGR00362 DnaA chromosomal rep 97.3 0.0098 2.1E-07 50.7 13.8 38 33-70 137-181 (405)
328 TIGR03015 pepcterm_ATPase puta 97.3 0.00026 5.5E-09 56.6 3.9 26 32-57 43-68 (269)
329 PF13555 AAA_29: P-loop contai 97.3 0.00035 7.5E-09 43.4 3.6 24 33-56 24-47 (62)
330 KOG4622 Predicted nucleotide k 97.3 0.0012 2.7E-08 50.4 7.2 48 112-160 96-143 (291)
331 PRK14950 DNA polymerase III su 97.3 0.004 8.7E-08 55.7 11.7 31 29-59 35-65 (585)
332 PRK14959 DNA polymerase III su 97.3 0.0047 1E-07 55.2 11.9 30 30-59 36-65 (624)
333 PF03205 MobB: Molybdopterin g 97.3 0.00026 5.6E-09 51.5 3.4 24 33-56 1-24 (140)
334 PRK14948 DNA polymerase III su 97.3 0.0097 2.1E-07 53.5 13.8 29 31-59 37-65 (620)
335 PF08298 AAA_PrkA: PrkA AAA do 97.3 0.00049 1.1E-08 57.1 5.2 28 29-56 85-112 (358)
336 PHA02244 ATPase-like protein 97.3 0.0003 6.4E-09 58.9 3.8 33 34-66 121-153 (383)
337 KOG1384 tRNA delta(2)-isopente 97.2 0.00048 1E-08 56.3 4.8 36 31-66 6-41 (348)
338 PRK14086 dnaA chromosomal repl 97.2 0.0019 4E-08 57.6 8.9 38 34-71 316-360 (617)
339 PRK07940 DNA polymerase III su 97.2 0.013 2.7E-07 50.0 13.6 29 31-59 35-63 (394)
340 cd03115 SRP The signal recogni 97.2 0.00032 6.8E-09 52.5 3.5 31 34-64 2-37 (173)
341 PRK06647 DNA polymerase III su 97.2 0.0041 8.9E-08 55.2 11.0 43 16-59 23-65 (563)
342 PF01695 IstB_IS21: IstB-like 97.2 0.00063 1.4E-08 51.5 5.1 108 31-160 46-162 (178)
343 KOG0738 AAA+-type ATPase [Post 97.2 0.0082 1.8E-07 50.5 11.9 30 34-63 247-276 (491)
344 PRK05896 DNA polymerase III su 97.2 0.009 2E-07 53.2 12.8 31 29-59 35-65 (605)
345 TIGR00763 lon ATP-dependent pr 97.2 0.00063 1.4E-08 62.7 5.9 31 31-61 346-376 (775)
346 COG1136 SalX ABC-type antimicr 97.2 0.00034 7.4E-09 54.8 3.5 25 30-54 29-53 (226)
347 TIGR00064 ftsY signal recognit 97.2 0.00039 8.5E-09 56.2 4.0 27 30-56 70-96 (272)
348 KOG0651 26S proteasome regulat 97.2 0.00077 1.7E-08 54.9 5.6 42 30-71 164-207 (388)
349 PHA02624 large T antigen; Prov 97.2 0.00075 1.6E-08 59.7 5.9 46 18-63 417-462 (647)
350 cd04155 Arl3 Arl3 subfamily. 97.2 0.00041 8.8E-09 51.5 3.8 25 31-55 13-37 (173)
351 PRK14974 cell division protein 97.2 0.00038 8.2E-09 57.8 4.0 27 30-56 138-164 (336)
352 PF08477 Miro: Miro-like prote 97.2 0.00038 8.2E-09 48.4 3.4 23 34-56 1-23 (119)
353 PF10662 PduV-EutP: Ethanolami 97.2 0.00031 6.7E-09 51.1 3.0 24 33-56 2-25 (143)
354 cd01120 RecA-like_NTPases RecA 97.2 0.0003 6.5E-09 51.2 3.0 31 34-64 1-36 (165)
355 PRK10416 signal recognition pa 97.2 0.0004 8.6E-09 57.4 4.0 27 30-56 112-138 (318)
356 TIGR00750 lao LAO/AO transport 97.2 0.00063 1.4E-08 55.7 5.1 35 22-56 24-58 (300)
357 PRK07133 DNA polymerase III su 97.2 0.0055 1.2E-07 55.7 11.4 31 29-59 37-67 (725)
358 PRK14242 phosphate transporter 97.2 7.6E-05 1.7E-09 59.4 -0.3 25 30-54 30-54 (253)
359 PHA03134 thymidine kinase; Pro 97.2 0.016 3.5E-07 48.0 13.1 25 140-164 165-189 (340)
360 KOG0743 AAA+-type ATPase [Post 97.2 0.00029 6.3E-09 59.8 3.1 29 35-63 238-266 (457)
361 PF00005 ABC_tran: ABC transpo 97.2 0.00026 5.6E-09 50.7 2.4 27 30-56 9-35 (137)
362 PRK14954 DNA polymerase III su 97.2 0.0056 1.2E-07 55.0 11.3 30 30-59 36-65 (620)
363 PRK11784 tRNA 2-selenouridine 97.2 0.0011 2.4E-08 55.3 6.5 115 32-161 141-258 (345)
364 COG0464 SpoVK ATPases of the A 97.2 0.00043 9.3E-09 60.5 4.2 34 30-63 274-307 (494)
365 PRK05564 DNA polymerase III su 97.2 0.0054 1.2E-07 50.4 10.5 43 15-58 10-52 (313)
366 PRK05563 DNA polymerase III su 97.2 0.0058 1.3E-07 54.3 11.3 44 15-59 22-65 (559)
367 PRK14953 DNA polymerase III su 97.2 0.017 3.6E-07 50.5 13.9 29 30-58 36-64 (486)
368 cd01130 VirB11-like_ATPase Typ 97.2 0.00041 8.8E-09 52.8 3.5 25 32-56 25-49 (186)
369 COG3839 MalK ABC-type sugar tr 97.2 0.00037 8E-09 57.7 3.5 25 30-54 27-51 (338)
370 PRK00440 rfc replication facto 97.2 0.00067 1.4E-08 55.5 5.0 24 33-56 39-62 (319)
371 PRK10463 hydrogenase nickel in 97.1 0.00077 1.7E-08 54.7 5.1 28 29-56 101-128 (290)
372 COG1855 ATPase (PilT family) [ 97.1 0.00035 7.5E-09 59.5 3.2 22 35-56 266-287 (604)
373 PRK08451 DNA polymerase III su 97.1 0.0064 1.4E-07 53.6 11.1 50 8-58 12-62 (535)
374 PF06745 KaiC: KaiC; InterPro 97.1 0.00091 2E-08 52.3 5.4 35 30-64 17-57 (226)
375 COG1116 TauB ABC-type nitrate/ 97.1 0.00045 9.6E-09 54.6 3.5 26 30-55 27-52 (248)
376 TIGR01166 cbiO cobalt transpor 97.1 0.00045 9.7E-09 52.5 3.5 27 30-56 16-42 (190)
377 CHL00176 ftsH cell division pr 97.1 0.00053 1.2E-08 61.6 4.5 34 30-63 214-247 (638)
378 PRK00149 dnaA chromosomal repl 97.1 0.0043 9.4E-08 53.6 9.9 37 34-70 150-193 (450)
379 COG3911 Predicted ATPase [Gene 97.1 0.00044 9.6E-09 50.5 3.1 25 33-58 10-34 (183)
380 cd03292 ABC_FtsE_transporter F 97.1 0.00047 1E-08 53.3 3.5 27 30-56 25-51 (214)
381 cd01124 KaiC KaiC is a circadi 97.1 0.00032 7E-09 52.8 2.5 31 34-64 1-36 (187)
382 KOG0736 Peroxisome assembly fa 97.1 0.0058 1.3E-07 55.3 10.5 108 34-150 707-845 (953)
383 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.1 0.00048 1.1E-08 53.4 3.5 27 30-56 28-54 (218)
384 TIGR00960 3a0501s02 Type II (G 97.1 0.00048 1E-08 53.4 3.5 27 30-56 27-53 (216)
385 TIGR03499 FlhF flagellar biosy 97.1 0.00054 1.2E-08 55.6 3.9 26 31-56 193-218 (282)
386 PRK05703 flhF flagellar biosyn 97.1 0.007 1.5E-07 52.0 10.8 34 32-65 221-261 (424)
387 PRK14490 putative bifunctional 97.1 0.00052 1.1E-08 57.9 3.7 27 31-57 4-30 (369)
388 PRK05707 DNA polymerase III su 97.1 0.016 3.4E-07 48.2 12.4 129 29-159 19-156 (328)
389 COG1124 DppF ABC-type dipeptid 97.1 0.00052 1.1E-08 54.0 3.4 29 26-54 27-55 (252)
390 cd03225 ABC_cobalt_CbiO_domain 97.1 0.00054 1.2E-08 52.9 3.5 27 30-56 25-51 (211)
391 TIGR01243 CDC48 AAA family ATP 97.1 0.00057 1.2E-08 62.6 4.2 34 30-63 210-243 (733)
392 TIGR01425 SRP54_euk signal rec 97.1 0.00048 1E-08 58.9 3.5 34 30-63 98-136 (429)
393 TIGR02673 FtsE cell division A 97.1 0.00054 1.2E-08 53.0 3.5 27 30-56 26-52 (214)
394 cd03269 ABC_putative_ATPase Th 97.1 0.00055 1.2E-08 52.8 3.6 27 30-56 24-50 (210)
395 PRK06067 flagellar accessory p 97.1 0.0014 3.1E-08 51.5 5.9 36 29-64 22-62 (234)
396 KOG0727 26S proteasome regulat 97.1 0.0025 5.4E-08 50.8 7.1 46 33-78 190-237 (408)
397 cd01918 HprK_C HprK/P, the bif 97.1 0.00063 1.4E-08 49.9 3.5 31 32-63 14-44 (149)
398 TIGR00176 mobB molybdopterin-g 97.1 0.00054 1.2E-08 50.7 3.2 23 34-56 1-23 (155)
399 PRK14087 dnaA chromosomal repl 97.1 0.0045 9.7E-08 53.6 9.3 38 34-71 143-187 (450)
400 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0016 3.6E-08 51.4 6.1 35 30-64 19-58 (237)
401 cd03259 ABC_Carb_Solutes_like 97.1 0.00061 1.3E-08 52.7 3.6 27 30-56 24-50 (213)
402 cd03301 ABC_MalK_N The N-termi 97.0 0.00062 1.3E-08 52.7 3.6 27 30-56 24-50 (213)
403 COG0541 Ffh Signal recognition 97.0 0.0073 1.6E-07 51.4 10.1 41 29-70 97-142 (451)
404 cd03262 ABC_HisP_GlnQ_permease 97.0 0.00062 1.3E-08 52.6 3.6 27 30-56 24-50 (213)
405 PRK04328 hypothetical protein; 97.0 0.0016 3.5E-08 51.9 6.0 34 30-63 21-59 (249)
406 cd03256 ABC_PhnC_transporter A 97.0 0.0006 1.3E-08 53.7 3.5 27 30-56 25-51 (241)
407 KOG1532 GTPase XAB1, interacts 97.0 0.0006 1.3E-08 54.7 3.4 42 29-70 16-62 (366)
408 TIGR02639 ClpA ATP-dependent C 97.0 0.0013 2.9E-08 60.2 6.1 25 32-56 203-227 (731)
409 cd03224 ABC_TM1139_LivF_branch 97.0 0.0006 1.3E-08 53.0 3.4 27 30-56 24-50 (222)
410 cd03219 ABC_Mj1267_LivG_branch 97.0 0.00056 1.2E-08 53.7 3.3 27 30-56 24-50 (236)
411 COG3842 PotA ABC-type spermidi 97.0 0.00058 1.3E-08 56.9 3.5 25 30-54 29-53 (352)
412 TIGR02211 LolD_lipo_ex lipopro 97.0 0.00064 1.4E-08 52.9 3.5 27 30-56 29-55 (221)
413 cd03226 ABC_cobalt_CbiO_domain 97.0 0.00062 1.4E-08 52.4 3.4 27 30-56 24-50 (205)
414 cd03235 ABC_Metallic_Cations A 97.0 0.00057 1.2E-08 52.9 3.2 27 30-56 23-49 (213)
415 PF06068 TIP49: TIP49 C-termin 97.0 0.00041 8.9E-09 57.9 2.5 49 17-68 38-90 (398)
416 cd03263 ABC_subfamily_A The AB 97.0 0.00064 1.4E-08 52.8 3.5 27 30-56 26-52 (220)
417 PRK11629 lolD lipoprotein tran 97.0 0.00063 1.4E-08 53.4 3.5 27 30-56 33-59 (233)
418 TIGR03608 L_ocin_972_ABC putat 97.0 0.00063 1.4E-08 52.3 3.4 27 30-56 22-48 (206)
419 cd03261 ABC_Org_Solvent_Resist 97.0 0.00065 1.4E-08 53.4 3.5 27 30-56 24-50 (235)
420 KOG0734 AAA+-type ATPase conta 97.0 0.0036 7.9E-08 54.6 8.2 35 29-63 334-368 (752)
421 TIGR02315 ABC_phnC phosphonate 97.0 0.00066 1.4E-08 53.6 3.5 27 30-56 26-52 (243)
422 cd03229 ABC_Class3 This class 97.0 0.00072 1.6E-08 50.9 3.6 27 30-56 24-50 (178)
423 cd03238 ABC_UvrA The excision 97.0 0.00069 1.5E-08 51.2 3.4 25 30-54 19-43 (176)
424 PRK10867 signal recognition pa 97.0 0.00075 1.6E-08 57.9 4.0 35 30-64 98-138 (433)
425 cd03260 ABC_PstB_phosphate_tra 97.0 0.0007 1.5E-08 52.9 3.6 27 30-56 24-50 (227)
426 cd03264 ABC_drug_resistance_li 97.0 0.00062 1.3E-08 52.6 3.3 25 31-56 25-49 (211)
427 COG1419 FlhF Flagellar GTP-bin 97.0 0.0033 7.2E-08 53.1 7.7 34 32-65 203-243 (407)
428 PRK10787 DNA-binding ATP-depen 97.0 0.0014 3E-08 60.4 6.0 32 30-61 347-378 (784)
429 cd03293 ABC_NrtD_SsuB_transpor 97.0 0.00064 1.4E-08 52.9 3.4 27 30-56 28-54 (220)
430 TIGR02237 recomb_radB DNA repa 97.0 0.00082 1.8E-08 51.8 3.9 35 30-64 10-49 (209)
431 PRK10247 putative ABC transpor 97.0 0.00071 1.5E-08 52.9 3.6 27 30-56 31-57 (225)
432 TIGR03708 poly_P_AMP_trns poly 97.0 0.0097 2.1E-07 51.9 10.8 113 29-166 296-431 (493)
433 cd03222 ABC_RNaseL_inhibitor T 97.0 0.00068 1.5E-08 51.3 3.3 27 30-56 23-49 (177)
434 PF00931 NB-ARC: NB-ARC domain 97.0 0.0012 2.5E-08 53.2 4.9 83 30-119 17-111 (287)
435 cd03257 ABC_NikE_OppD_transpor 97.0 0.00067 1.5E-08 52.9 3.4 27 30-56 29-55 (228)
436 TIGR01618 phage_P_loop phage n 97.0 0.00059 1.3E-08 53.4 3.0 25 30-54 10-34 (220)
437 cd03232 ABC_PDR_domain2 The pl 97.0 0.00069 1.5E-08 51.7 3.4 25 30-54 31-55 (192)
438 cd03223 ABCD_peroxisomal_ALDP 97.0 0.00077 1.7E-08 50.3 3.6 27 30-56 25-51 (166)
439 cd03116 MobB Molybdenum is an 97.0 0.00079 1.7E-08 50.0 3.5 24 33-56 2-25 (159)
440 cd03296 ABC_CysA_sulfate_impor 97.0 0.00072 1.6E-08 53.3 3.5 27 30-56 26-52 (239)
441 PRK13768 GTPase; Provisional 97.0 0.00071 1.5E-08 54.1 3.5 25 32-56 2-26 (253)
442 KOG0780 Signal recognition par 97.0 0.0038 8.3E-08 52.3 7.8 42 15-56 77-125 (483)
443 TIGR03864 PQQ_ABC_ATP ABC tran 97.0 0.00074 1.6E-08 53.2 3.6 27 30-56 25-51 (236)
444 COG1120 FepC ABC-type cobalami 97.0 0.00074 1.6E-08 53.9 3.5 27 30-56 26-52 (258)
445 cd04163 Era Era subfamily. Er 97.0 0.00069 1.5E-08 49.2 3.2 24 32-55 3-26 (168)
446 cd03247 ABCC_cytochrome_bd The 97.0 0.00079 1.7E-08 50.7 3.6 27 30-56 26-52 (178)
447 PRK14721 flhF flagellar biosyn 97.0 0.011 2.3E-07 50.7 10.7 26 31-56 190-215 (420)
448 cd01394 radB RadB. The archaea 97.0 0.00088 1.9E-08 52.0 3.9 35 30-64 17-56 (218)
449 COG1484 DnaC DNA replication p 97.0 0.006 1.3E-07 48.8 8.7 41 31-71 104-149 (254)
450 PRK13541 cytochrome c biogenes 97.0 0.00079 1.7E-08 51.4 3.5 27 30-56 24-50 (195)
451 cd03265 ABC_DrrA DrrA is the A 97.0 0.00079 1.7E-08 52.4 3.6 27 30-56 24-50 (220)
452 cd03258 ABC_MetN_methionine_tr 97.0 0.00077 1.7E-08 52.9 3.6 27 30-56 29-55 (233)
453 cd03246 ABCC_Protease_Secretio 97.0 0.00086 1.9E-08 50.3 3.6 27 30-56 26-52 (173)
454 PRK09112 DNA polymerase III su 97.0 0.016 3.4E-07 48.6 11.4 43 15-58 29-71 (351)
455 TIGR00959 ffh signal recogniti 97.0 0.00088 1.9E-08 57.4 4.0 35 30-64 97-137 (428)
456 cd03230 ABC_DR_subfamily_A Thi 97.0 0.00085 1.8E-08 50.3 3.5 27 30-56 24-50 (173)
457 TIGR03410 urea_trans_UrtE urea 97.0 0.00079 1.7E-08 52.7 3.5 27 30-56 24-50 (230)
458 TIGR01978 sufC FeS assembly AT 97.0 0.00079 1.7E-08 53.1 3.5 26 30-55 24-49 (243)
459 PRK13540 cytochrome c biogenes 97.0 0.00086 1.9E-08 51.5 3.6 27 30-56 25-51 (200)
460 COG0378 HypB Ni2+-binding GTPa 97.0 0.00087 1.9E-08 51.1 3.5 31 33-63 14-48 (202)
461 TIGR02770 nickel_nikD nickel i 96.9 0.0008 1.7E-08 52.8 3.5 27 30-56 10-36 (230)
462 PRK13341 recombination factor 96.9 0.0014 2.9E-08 59.8 5.3 33 31-63 51-83 (725)
463 PRK05642 DNA replication initi 96.9 0.0013 2.8E-08 51.9 4.6 36 33-68 46-86 (234)
464 PRK15177 Vi polysaccharide exp 96.9 0.00085 1.8E-08 52.1 3.5 27 30-56 11-37 (213)
465 PRK11248 tauB taurine transpor 96.9 0.00085 1.8E-08 53.6 3.6 27 30-56 25-51 (255)
466 PRK14250 phosphate ABC transpo 96.9 0.00085 1.8E-08 53.0 3.5 27 30-56 27-53 (241)
467 TIGR02655 circ_KaiC circadian 96.9 0.0014 3.1E-08 57.1 5.2 52 14-65 245-301 (484)
468 TIGR02323 CP_lyasePhnK phospho 96.9 0.00081 1.8E-08 53.5 3.4 27 30-56 27-53 (253)
469 PRK11264 putative amino-acid A 96.9 0.00087 1.9E-08 53.2 3.6 27 30-56 27-53 (250)
470 cd03216 ABC_Carb_Monos_I This 96.9 0.00091 2E-08 49.7 3.5 27 30-56 24-50 (163)
471 cd03250 ABCC_MRP_domain1 Domai 96.9 0.0009 2E-08 51.4 3.6 28 29-56 28-55 (204)
472 PRK14247 phosphate ABC transpo 96.9 0.00087 1.9E-08 53.2 3.5 27 30-56 27-53 (250)
473 PRK11124 artP arginine transpo 96.9 0.00088 1.9E-08 52.9 3.6 27 30-56 26-52 (242)
474 cd03228 ABCC_MRP_Like The MRP 96.9 0.00097 2.1E-08 49.9 3.6 27 30-56 26-52 (171)
475 COG1219 ClpX ATP-dependent pro 96.9 0.00092 2E-08 54.7 3.6 28 34-61 99-126 (408)
476 PHA03133 thymidine kinase; Pro 96.9 0.058 1.3E-06 45.0 14.1 25 33-57 41-65 (368)
477 PRK10584 putative ABC transpor 96.9 0.00091 2E-08 52.3 3.6 27 30-56 34-60 (228)
478 PRK04296 thymidine kinase; Pro 96.9 0.00087 1.9E-08 51.2 3.3 24 33-56 3-26 (190)
479 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.00093 2E-08 48.7 3.3 27 30-56 24-50 (144)
480 cd03218 ABC_YhbG The ABC trans 96.9 0.00091 2E-08 52.4 3.5 27 30-56 24-50 (232)
481 cd03234 ABCG_White The White s 96.9 0.00089 1.9E-08 52.3 3.5 27 30-56 31-57 (226)
482 PRK14722 flhF flagellar biosyn 96.9 0.00099 2.1E-08 56.1 3.9 27 30-56 135-161 (374)
483 PRK14971 DNA polymerase III su 96.9 0.013 2.7E-07 52.7 11.1 42 17-59 25-66 (614)
484 PRK13539 cytochrome c biogenes 96.9 0.00096 2.1E-08 51.5 3.6 27 30-56 26-52 (207)
485 cd03214 ABC_Iron-Siderophores_ 96.9 0.001 2.2E-08 50.3 3.6 27 30-56 23-49 (180)
486 PF01712 dNK: Deoxynucleoside 96.9 0.0021 4.5E-08 47.0 5.1 29 133-161 61-90 (146)
487 TIGR03771 anch_rpt_ABC anchore 96.9 0.00093 2E-08 52.2 3.5 26 31-56 5-30 (223)
488 PRK10744 pstB phosphate transp 96.9 0.0009 2E-08 53.5 3.5 26 30-55 37-62 (260)
489 PRK10908 cell division protein 96.9 0.00096 2.1E-08 52.0 3.6 27 30-56 26-52 (222)
490 cd03215 ABC_Carb_Monos_II This 96.9 0.00095 2.1E-08 50.5 3.4 27 30-56 24-50 (182)
491 PRK11331 5-methylcytosine-spec 96.9 0.0015 3.2E-08 56.2 4.9 26 32-57 194-219 (459)
492 cd03268 ABC_BcrA_bacitracin_re 96.9 0.00098 2.1E-08 51.4 3.5 26 30-55 24-49 (208)
493 PRK11701 phnK phosphonate C-P 96.9 0.00089 1.9E-08 53.4 3.4 28 29-56 29-56 (258)
494 PRK11889 flhF flagellar biosyn 96.9 0.0021 4.5E-08 54.5 5.6 35 30-64 239-278 (436)
495 PRK10771 thiQ thiamine transpo 96.9 0.00093 2E-08 52.4 3.5 28 29-56 22-49 (232)
496 TIGR01184 ntrCD nitrate transp 96.9 0.00098 2.1E-08 52.3 3.5 27 30-56 9-35 (230)
497 TIGR03005 ectoine_ehuA ectoine 96.9 0.00096 2.1E-08 53.0 3.5 27 30-56 24-50 (252)
498 PRK09493 glnQ glutamine ABC tr 96.9 0.00099 2.1E-08 52.5 3.5 27 30-56 25-51 (240)
499 PRK10895 lipopolysaccharide AB 96.9 0.00099 2.2E-08 52.6 3.5 27 30-56 27-53 (241)
500 cd03245 ABCC_bacteriocin_expor 96.9 0.001 2.2E-08 51.7 3.5 27 30-56 28-54 (220)
No 1
>PLN02674 adenylate kinase
Probab=100.00 E-value=6.3e-37 Score=240.92 Aligned_cols=192 Identities=91% Similarity=1.364 Sum_probs=178.0
Q ss_pred ccccccCCCCCHHHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHH
Q 029307 3 SSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAK 82 (195)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~ 82 (195)
|.-+.++++.|..|++.++.+++.+..+.++.|+|.|+|||||+|+|+.|+++||+.||+.++++|+++..++.+|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~ 81 (244)
T PLN02674 2 SAAAANLEDVPSVDLMTELLRRMKCSSKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAK 81 (244)
T ss_pred cccccccccCchHHHHHHHHHHHhhccccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHH
Confidence 34456788889999999999988766666789999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 83 EAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
+++..|..++++++..++..++....+..+||+||||++..|...|.+.+...+..++.+|+|++|.+++.+|+..|+.|
T Consensus 82 ~~~~~G~lvpd~iv~~lv~~~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~ 161 (244)
T PLN02674 82 EAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIH 161 (244)
T ss_pred HHHHcCCccCHHHHHHHHHHHHhCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccc
Confidence 99999999999999999999998877778999999999999999999988887888999999999999999999999999
Q ss_pred CCCCceeeCCCCCCCCCCCCCCCCCcc--ccCCC
Q 029307 163 PSSGRTYHTKFAPPKVPGVDDVSRCNW--RTFDS 194 (195)
Q Consensus 163 ~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 194 (195)
+.+|+.||..|.||..++.|+.||++| |++|.
T Consensus 162 ~~~g~~yn~~~~pp~~~~~~~~~g~~L~~R~DD~ 195 (244)
T PLN02674 162 PSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDT 195 (244)
T ss_pred cccCCccccccCCCcccCcccccCCccccCCCCC
Confidence 999999999999999999999999987 66653
No 2
>PRK14529 adenylate kinase; Provisional
Probab=99.98 E-value=3.5e-31 Score=206.12 Aligned_cols=160 Identities=38% Similarity=0.635 Sum_probs=145.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
|.|+|.|+|||||||+|+.|+++|++.+++.++++|+++..++.+++.+++++.++..++++++..++..++.... ..+
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~-~~g 79 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDG-KNG 79 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccC-CCc
Confidence 4689999999999999999999999999999999999998889999999999999999999999999999998876 789
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCCceeeCCC-CCCC-CCCCCCCCCCcc-
Q 029307 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKF-APPK-VPGVDDVSRCNW- 189 (195)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~~~~~~-~~~~-~~~~~~~~~~~~- 189 (195)
||+||||++..|+..|.+.+...+..++.+|+|++|.+++.+|+..|+.|..+|+.|+..+ .||. +.+.|+.||++|
T Consensus 80 ~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~ 159 (223)
T PRK14529 80 WLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELS 159 (223)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCccc
Confidence 9999999999999999988887778899999999999999999999999999888776655 4444 344899999987
Q ss_pred -ccCC
Q 029307 190 -RTFD 193 (195)
Q Consensus 190 -~~~~ 193 (195)
|.+|
T Consensus 160 ~R~DD 164 (223)
T PRK14529 160 TRADD 164 (223)
T ss_pred cCCCC
Confidence 6665
No 3
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.97 E-value=7.4e-30 Score=198.99 Aligned_cols=159 Identities=53% Similarity=0.903 Sum_probs=148.5
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
|+|+|+|+|||||||+|+.|+++||+.+++.++++++.+..+...+..+.+.+..+..++++.+..++...+.......+
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g 80 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNG 80 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCC
Confidence 46999999999999999999999999999999999999988888999999999999999999999999999987766669
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCCceeeCCCCCCCCCCCCCCCCCcccc
Q 029307 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVSRCNWRT 191 (195)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (195)
||+||||++..|...|.+.+...+..++.+|+|++|.+++.+|+..|..|+.||..||..+.||+.++.|+.||++|..
T Consensus 81 ~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~ 159 (215)
T PRK00279 81 FLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQ 159 (215)
T ss_pred EEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccC
Confidence 9999999999999999888877777888999999999999999999999999999999999999999999999988753
No 4
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.97 E-value=1.7e-29 Score=196.23 Aligned_cols=156 Identities=53% Similarity=0.886 Sum_probs=142.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-CCCcE
Q 029307 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS-CQKGF 113 (195)
Q Consensus 35 I~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~ 113 (195)
|+|+|+|||||||+|+.|+++||+.+|+.++++++++..++..+..+.+.+.++..++++++..++..++.... ...+|
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~ 81 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGF 81 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcE
Confidence 89999999999999999999999999999999999998888899999999999999999999999999998743 35699
Q ss_pred EEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCCceeeCCCCCCCCCCCCCCCCCcc--cc
Q 029307 114 ILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVSRCNW--RT 191 (195)
Q Consensus 114 iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~ 191 (195)
|+||||++..|...|.+.+.. .++.+|+|++|.+++.+|+..|+.|+.||+.||..+.+|..+..|+.||++| |.
T Consensus 82 ilDGfPrt~~Qa~~l~~~~~~---~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~ 158 (210)
T TIGR01351 82 ILDGFPRTLSQAEALDALLKE---KIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQRE 158 (210)
T ss_pred EEeCCCCCHHHHHHHHHHhcc---CCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCC
Confidence 999999999999988876531 5789999999999999999999999999999999999999888888888887 55
Q ss_pred CC
Q 029307 192 FD 193 (195)
Q Consensus 192 ~~ 193 (195)
+|
T Consensus 159 dD 160 (210)
T TIGR01351 159 DD 160 (210)
T ss_pred CC
Confidence 54
No 5
>PRK14526 adenylate kinase; Provisional
Probab=99.97 E-value=3.7e-29 Score=194.05 Aligned_cols=153 Identities=37% Similarity=0.682 Sum_probs=140.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
|.|+|+|+|||||||+++.|++.+++.+++.++++++.+..++..+..+.+.+..+..++++.+..++...+.......+
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g 80 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDN 80 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCc
Confidence 45889999999999999999999999999999999999988889999999999999999999999999999988776789
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCCceeeCCCCCCCCCCCCCCCCCccc
Q 029307 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVSRCNWR 190 (195)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 190 (195)
||+||||++..|...|.+.+. . ..+|+|++|.+++.+|+..|..|+.||+.||..+.||+.++.|+.||++|.
T Consensus 81 ~ilDGfPR~~~Qa~~l~~~~~----~-~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~ 153 (211)
T PRK14526 81 FILDGFPRNINQAKALDKFLP----N-IKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLY 153 (211)
T ss_pred EEEECCCCCHHHHHHHHHhcC----C-CEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeee
Confidence 999999999999998877532 2 368889999999999999999999999999999999999999999999764
No 6
>PLN02459 probable adenylate kinase
Probab=99.96 E-value=2.5e-28 Score=193.14 Aligned_cols=138 Identities=33% Similarity=0.635 Sum_probs=128.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP-- 107 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-- 107 (195)
.++++|+|.|+|||||||+|+.|++.||+.||+.++++|+++..++.+|+.+..++..+..+|++++..++..++...
T Consensus 27 ~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~ 106 (261)
T PLN02459 27 GRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEE 106 (261)
T ss_pred cCccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Confidence 456789999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCCceeeCC
Q 029307 108 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTK 172 (195)
Q Consensus 108 ~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~~~~~ 172 (195)
....+||+||||++..|...|... ..++.||+|++|.+++.+|+..|+.|+.||+.||..
T Consensus 107 ~~~~g~iLDGFPRt~~Qa~~Le~~-----~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~ 166 (261)
T PLN02459 107 EGESGFILDGFPRTVRQAEILEGV-----TDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVA 166 (261)
T ss_pred cCCceEEEeCCCCCHHHHHHHHhc-----CCCCEEEEEECCHHHHHHHhhccccccccCcccccc
Confidence 345799999999999999998765 257899999999999999999999999999999985
No 7
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.96 E-value=6.1e-28 Score=189.23 Aligned_cols=153 Identities=33% Similarity=0.625 Sum_probs=136.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--C
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK--P 107 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~ 107 (195)
+.|+.|+|+|+|||||||+|+.|+++||+.++++++++++++..++.+|..+.+++..+..++++.+..++...+.. .
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~ 83 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTD 83 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhcc
Confidence 34688999999999999999999999999999999999999988889999999999999999999999999999987 4
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCCceeeCCC-------CCC-CCC
Q 029307 108 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKF-------APP-KVP 179 (195)
Q Consensus 108 ~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~~~~~~-------~~~-~~~ 179 (195)
....+||+||||++..|...|.+. ..++.+++|+++.+++.+|+..|+.|+.||+.||..+ .|| .++
T Consensus 84 ~~~~g~iLDGfPRt~~Qa~~l~~~-----~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~ 158 (229)
T PTZ00088 84 DCFKGFILDGFPRNLKQCKELGKI-----TNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPP 158 (229)
T ss_pred ccCceEEEecCCCCHHHHHHHHhc-----CCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCC
Confidence 456799999999999999888654 3688999999999999999999999999999999863 233 335
Q ss_pred CCCCCCCC
Q 029307 180 GVDDVSRC 187 (195)
Q Consensus 180 ~~~~~~~~ 187 (195)
+.|+.||+
T Consensus 159 ~~c~~~~~ 166 (229)
T PTZ00088 159 ADCEGCKG 166 (229)
T ss_pred CcccccCC
Confidence 68998985
No 8
>PRK14530 adenylate kinase; Provisional
Probab=99.94 E-value=1.2e-25 Score=175.36 Aligned_cols=149 Identities=40% Similarity=0.679 Sum_probs=129.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHH-----HcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV-----AAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 107 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 107 (195)
+.|+|+|+|||||||+++.|++++|+.+++.++++++.. ......+. ....+..+..++++....++...+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~- 81 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD- 81 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc-
Confidence 479999999999999999999999999999999999887 22334443 56677888899999988888887654
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCCceeeCCCCCCCCCCCCCCCCC
Q 029307 108 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVSRC 187 (195)
Q Consensus 108 ~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 187 (195)
..+||+||||++..|...|.+.. .++.+|+|++|.+++.+|+..|+.++.+|+.||..+.||..+++|+.||+
T Consensus 82 --~~~~IldG~pr~~~q~~~l~~~~-----~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~ 154 (215)
T PRK14530 82 --ADGFVLDGYPRNLEQAEYLESIT-----DLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGG 154 (215)
T ss_pred --CCCEEEcCCCCCHHHHHHHHHhc-----CCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCC
Confidence 35799999999999988776542 57899999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 029307 188 NWR 190 (195)
Q Consensus 188 ~~~ 190 (195)
+|.
T Consensus 155 rl~ 157 (215)
T PRK14530 155 ELI 157 (215)
T ss_pred ccc
Confidence 663
No 9
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.94 E-value=1.8e-25 Score=165.58 Aligned_cols=131 Identities=31% Similarity=0.560 Sum_probs=121.0
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHc-CChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA-KTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 107 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 107 (195)
...+++|+|.|+|||||-|+|..+.++|++.|+|+++++|++... ++..|..+.+.+.++..+|.+++..++...+...
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~ 84 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSS 84 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhc
Confidence 345779999999999999999999999999999999999999987 8999999999999999999999999999999887
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 108 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 108 ~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
...++|||||||++.+|...|...+.. .+++++|++|+.+++.+|+..|.+.
T Consensus 85 ~~~~~fLIDGyPR~~~q~~~fe~~i~~---~~~fvl~fdc~ee~~l~Rll~R~q~ 136 (195)
T KOG3079|consen 85 GDSNGFLIDGYPRNVDQLVEFERKIQG---DPDFVLFFDCPEETMLKRLLHRGQS 136 (195)
T ss_pred CCCCeEEecCCCCChHHHHHHHHHhcC---CCCEEEEEeCCHHHHHHHHHhhccc
Confidence 766779999999999999999887642 5889999999999999999999764
No 10
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=99.94 E-value=7e-26 Score=175.21 Aligned_cols=155 Identities=50% Similarity=0.897 Sum_probs=144.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 110 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 110 (195)
++..+++.|+||+||+|+|.++++.|++.|+++++++|+++...++++......+..+..++++++..++...+....+.
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~ 93 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQ 93 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999777778877678
Q ss_pred CcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCCceeeCCCCCCCCCCCCCCCCCcc
Q 029307 111 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVSRCNW 189 (195)
Q Consensus 111 ~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 189 (195)
.+|++|++|++..+...+. .++..+|.||.|.+|.+.+.+|+..|+.|+.+|+.||..|.||..++.+|+.|+||
T Consensus 94 ~~~ildg~Prt~~qa~~l~----~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL 168 (235)
T KOG3078|consen 94 KGFILDGFPRTVQQAEELL----DRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPL 168 (235)
T ss_pred cccccCCCCcchHHHHHHH----HccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChh
Confidence 8999999999999877733 34568999999999999999999999999999999999999999999999999965
No 11
>PRK13808 adenylate kinase; Provisional
Probab=99.93 E-value=4.8e-25 Score=180.02 Aligned_cols=129 Identities=50% Similarity=0.849 Sum_probs=121.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
|.|+|+|+|||||||+|+.|++.||+.+|+.++++++++..++..+..+.+++..+.+++++++..++...+...+...+
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G 80 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANG 80 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCC
Confidence 46999999999999999999999999999999999999998999999999999999999999999999999988777789
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
|||||||++..|...|.+.+...+..||++|+|++|++++++|+..|..
T Consensus 81 ~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~ 129 (333)
T PRK13808 81 FILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVA 129 (333)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcc
Confidence 9999999999999999988887788999999999999999999999854
No 12
>PRK14532 adenylate kinase; Provisional
Probab=99.93 E-value=8.8e-25 Score=166.91 Aligned_cols=129 Identities=47% Similarity=0.791 Sum_probs=120.5
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
|.|+|.|+|||||||+|+.|++++|+.+++.++++++++..++..+..+.+.+..+..++++.+..++...+.....+.+
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 80 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGG 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCc
Confidence 46899999999999999999999999999999999999988888999999999999999999999999999988777789
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
||+||||++..|+..+.+.+...+..||.+|+|++|++++.+|+..|..
T Consensus 81 ~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~ 129 (188)
T PRK14532 81 AIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFE 129 (188)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcC
Confidence 9999999999999999988888888899999999999999999999853
No 13
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.93 E-value=1.1e-24 Score=160.87 Aligned_cols=122 Identities=44% Similarity=0.830 Sum_probs=110.8
Q ss_pred EEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCcEEEe
Q 029307 37 LVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILD 116 (195)
Q Consensus 37 i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iid 116 (195)
|.|+|||||||+|+.|+++||+.||+.++++++.+..++..|..+.+.+.++..+|++++..++..++.......+||+|
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild 80 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD 80 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999987667899999
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhc
Q 029307 117 GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG 158 (195)
Q Consensus 117 ~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~ 158 (195)
|||++..|...|.+.+......|+.+|+|++|.+++.+|+..
T Consensus 81 GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 81 GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 999999999999987777788999999999999999999887
No 14
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.93 E-value=3.3e-24 Score=164.09 Aligned_cols=137 Identities=55% Similarity=0.947 Sum_probs=124.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCcE
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGF 113 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 113 (195)
.|+|+|+|||||||+|+.|++++|+.+++.++++++.+......+..+.+.+..+..++++.+..++...+.......+|
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~ 80 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGF 80 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCE
Confidence 38999999999999999999999999999999999998877888999999999888999999999999988876556789
Q ss_pred EEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCCceeeC
Q 029307 114 ILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHT 171 (195)
Q Consensus 114 iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~~~~ 171 (195)
|+||||++..|...|.+.+.. ...++.+|+|++|.+++.+|+.+|..++.+|+.||.
T Consensus 81 vldg~Pr~~~q~~~l~~~~~~-~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~ 137 (194)
T cd01428 81 ILDGFPRTVDQAEALDELLDE-GIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHL 137 (194)
T ss_pred EEeCCCCCHHHHHHHHHHHhc-CCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCc
Confidence 999999999999988876532 235789999999999999999999999999999998
No 15
>PRK14531 adenylate kinase; Provisional
Probab=99.92 E-value=5.9e-24 Score=161.86 Aligned_cols=128 Identities=45% Similarity=0.752 Sum_probs=116.9
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
+.|+|+|+|||||||+|+.|++++|+.+|+.++++++++..++.++..+..++..+..++++++..++...+.... ..+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~-~~g 81 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALN-SGG 81 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcc-CCc
Confidence 5799999999999999999999999999999999999998888899999999999999999999999888886543 568
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
||+||||++..|...|.+.+...+..++.+|+|++|++++.+|+..|..
T Consensus 82 ~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r 130 (183)
T PRK14531 82 WLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGR 130 (183)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCC
Confidence 9999999999999999988877777788999999999999999999853
No 16
>PRK14528 adenylate kinase; Provisional
Probab=99.92 E-value=1.1e-23 Score=160.78 Aligned_cols=130 Identities=45% Similarity=0.843 Sum_probs=120.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
+.|+|.|+|||||||+|+.|+++||+.+++.++++++.+..++.+|..+..++..+..+++..+..++...+.......+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g 81 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG 81 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence 36899999999999999999999999999999999999998899999999999999999999999999999988776779
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
||+||+|++..|...|.+.+...+..+|.+|+|++|.+++.+|+..|...
T Consensus 82 ~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~ 131 (186)
T PRK14528 82 FLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEI 131 (186)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccc
Confidence 99999999999999999888777778999999999999999999999753
No 17
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.91 E-value=3.2e-23 Score=157.44 Aligned_cols=126 Identities=29% Similarity=0.557 Sum_probs=113.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCcE
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGF 113 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 113 (195)
+|+|+|+|||||||+|+.|++++|+.++++++++++.+..++..++.+.+++.++..++++.+..++...+.... +.+|
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~-~~~~ 79 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADG-SKKF 79 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccC-CCcE
Confidence 489999999999999999999999999999999999998778889889999999999999999999998887655 6789
Q ss_pred EEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 114 ILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 114 iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
|+||+|++..+...|.+.+. .+..++.+|+|++|++++.+|+.+|..
T Consensus 80 vlDg~p~~~~q~~~~~~~~~-~~~~~d~~i~l~~~~~~~~~Rl~~R~~ 126 (183)
T TIGR01359 80 LIDGFPRNEENLEAWEKLMD-NKVNFKFVLFFDCPEEVMIKRLLKRGQ 126 (183)
T ss_pred EEeCCCCCHHHHHHHHHHHh-cCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence 99999999999998887653 335688999999999999999999975
No 18
>PLN02842 nucleotide kinase
Probab=99.91 E-value=5.6e-23 Score=175.36 Aligned_cols=142 Identities=38% Similarity=0.725 Sum_probs=127.8
Q ss_pred EEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-CCCcEE
Q 029307 36 ILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS-CQKGFI 114 (195)
Q Consensus 36 ~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~i 114 (195)
.|+|+|||||||+|+.|+++|++.|++.+++++.++..++..|+.+++++.++..++++.+..++..++.... ...+||
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~I 80 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWL 80 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence 3799999999999999999999999999999999999899999999999999999999999999998887654 346899
Q ss_pred EeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCCceeeCCCCCCCCCCC
Q 029307 115 LDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGV 181 (195)
Q Consensus 115 id~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~~~~~~~ 181 (195)
+||||++..|...|.+. ...||++|+|++|++++.+|+..|..|+.||..||..+.+|..+..
T Consensus 81 LDGfPRt~~Qa~~Le~~----~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~ 143 (505)
T PLN02842 81 LDGYPRSFAQAQSLEKL----KIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEI 143 (505)
T ss_pred EeCCCCcHHHHHHHHhc----CCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCcccc
Confidence 99999999988776543 4679999999999999999999999999999999999988865443
No 19
>PRK02496 adk adenylate kinase; Provisional
Probab=99.91 E-value=1.1e-22 Score=154.76 Aligned_cols=129 Identities=47% Similarity=0.833 Sum_probs=118.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
+.|+|+|+|||||||+|+.|++.+|+.+++.++++++.+..++..|..+...+.++..++++.+..++...+.......+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g 81 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANG 81 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCC
Confidence 56999999999999999999999999999999999999988888898899999999999999999999999987666679
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
||+||||++..|...+.+.+...+..++.+|+|++|.+++.+|+..|..
T Consensus 82 ~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 130 (184)
T PRK02496 82 WILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGR 130 (184)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCC
Confidence 9999999999999888877776667789999999999999999999953
No 20
>PRK14527 adenylate kinase; Provisional
Probab=99.91 E-value=9.6e-23 Score=156.15 Aligned_cols=131 Identities=40% Similarity=0.632 Sum_probs=119.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 109 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 109 (195)
+.+++|+|.|+|||||||+|+.|++++|+.+++.++++++....+..++..+...+..+..++++.+..++...+....+
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~ 83 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEP 83 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCC
Confidence 46789999999999999999999999999999999999999888888898888989999999999999999988876553
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 110 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 110 ~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
.+||+||||++..|+..+...+...+..++.+|+|++|.+++.+|+.+|..
T Consensus 84 -~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~ 134 (191)
T PRK14527 84 -VRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERAR 134 (191)
T ss_pred -CcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcc
Confidence 579999999999999989888877777888999999999999999999964
No 21
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.90 E-value=1.4e-22 Score=153.21 Aligned_cols=129 Identities=43% Similarity=0.807 Sum_probs=121.9
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
|.|+|.|+|||||||+|+.|+++++++|++.+++++......++++..+..++..+..+++..+...+..++...++..+
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~ 80 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAG 80 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCe
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999998766558
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
||+|+||++..+.+.+...+...+...+.++.++++.+.+..|+..|..
T Consensus 81 ~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~ 129 (178)
T COG0563 81 FILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV 129 (178)
T ss_pred EEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc
Confidence 9999999999999999999988888899999999999999999999964
No 22
>PLN02200 adenylate kinase family protein
Probab=99.90 E-value=1.5e-22 Score=159.50 Aligned_cols=129 Identities=29% Similarity=0.551 Sum_probs=114.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 108 (195)
.+.|++|+|+|+|||||||+|+.|++++|+.||+.++++|+.+...+..+..+.+.+..+..++++.+..++...+....
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~ 119 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSD 119 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Confidence 34567999999999999999999999999999999999999998888889999999999999999999888888887543
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 109 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 109 ~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
..+||+||+|++..|+..|.+.+ +..||.+|+|+++++++.+|+.+|+.
T Consensus 120 -~~~~ILDG~Prt~~q~~~l~~~~---~~~pd~vi~Ld~~~e~~~~Rl~~R~~ 168 (234)
T PLN02200 120 -NNKFLIDGFPRTEENRIAFERII---GAEPNVVLFFDCPEEEMVKRVLNRNQ 168 (234)
T ss_pred -CCeEEecCCcccHHHHHHHHHHh---ccCCCEEEEEECCHHHHHHHHHcCcC
Confidence 46899999999999998887654 24689999999999999999999964
No 23
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.86 E-value=3.1e-20 Score=141.33 Aligned_cols=125 Identities=36% Similarity=0.607 Sum_probs=107.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CCCC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK-PSCQ 110 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~ 110 (195)
.++|+|+|+|||||||+++.|++++|+.+++.++++++.+......++.+...+.++..++...+...+...+.. ...+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTS 82 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcC
Confidence 468999999999999999999999999999999999998766677788888888888888888888877776654 3446
Q ss_pred CcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 111 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 111 ~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
.+||+||+|++..+...+...+ ..++.+|+|++|.+++.+|+..|.
T Consensus 83 ~~~i~dg~~~~~~q~~~~~~~~----~~~~~vi~l~~~~~~~~~Rl~~R~ 128 (188)
T TIGR01360 83 KGFLIDGYPREVKQGEEFERRI----GPPTLVLYFDCSEDTMVKRLLKRA 128 (188)
T ss_pred CeEEEeCCCCCHHHHHHHHHcC----CCCCEEEEEECCHHHHHHHHHccc
Confidence 6899999999988887765433 468899999999999999999986
No 24
>PRK01184 hypothetical protein; Provisional
Probab=99.63 E-value=1.7e-14 Score=109.63 Aligned_cols=118 Identities=23% Similarity=0.291 Sum_probs=83.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHc-CC-----hHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA-KT-----PLGIKAKEAMDKGELVSDDLVVGIIDEAMKK 106 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 106 (195)
++|+|+|+|||||||+++ +++++|+.+++.++++++.+.. +. ..+....+.... +....+...+...+..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~i~~ 77 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKE---LGMDAVAKRTVPKIRE 77 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHH---HChHHHHHHHHHHHHh
Confidence 489999999999999987 7788999999999999998742 21 134443333221 2223333333334433
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 107 PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 107 ~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
..+..+|+|++ +...+...+.+.+. ....+|++++|.+++.+|+..|.
T Consensus 78 -~~~~~vvidg~-r~~~e~~~~~~~~~----~~~~~i~v~~~~~~~~~Rl~~R~ 125 (184)
T PRK01184 78 -KGDEVVVIDGV-RGDAEVEYFRKEFP----EDFILIAIHAPPEVRFERLKKRG 125 (184)
T ss_pred -cCCCcEEEeCC-CCHHHHHHHHHhCC----cccEEEEEECCHHHHHHHHHHcC
Confidence 23467999998 67777777766542 24489999999999999999985
No 25
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.60 E-value=5.6e-15 Score=107.51 Aligned_cols=119 Identities=24% Similarity=0.386 Sum_probs=81.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChH---HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPL---GIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 110 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 110 (195)
+|+|+|+|||||||+++.|+++++..+++.|++........... ....... -...+...+...+.. +
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~---g 70 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEER-------AYQILNAAIRKALRN---G 70 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHH-------HHHHHHHHHHHHHHT---T
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHH-------HHHHHHHHHHHHHHc---C
Confidence 58999999999999999999999999999977655443211100 0000000 011223444444443 4
Q ss_pred CcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCC
Q 029307 111 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHP 163 (195)
Q Consensus 111 ~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~ 163 (195)
..+|+|........+..+.+.+...+..+ .+|+|+++.+++.+|+.+|....
T Consensus 71 ~~~vvd~~~~~~~~r~~~~~~~~~~~~~~-~~v~l~~~~~~~~~R~~~R~~~~ 122 (143)
T PF13671_consen 71 NSVVVDNTNLSREERARLRELARKHGYPV-RVVYLDAPEETLRERLAQRNREG 122 (143)
T ss_dssp -EEEEESS--SHHHHHHHHHHHHHCTEEE-EEEEECHHHHHHHHHHHTTHCCC
T ss_pred CCceeccCcCCHHHHHHHHHHHHHcCCeE-EEEEEECCHHHHHHHHHhcCCcc
Confidence 56999988888888888888887776655 89999999999999999997653
No 26
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.58 E-value=5.1e-14 Score=102.85 Aligned_cols=112 Identities=21% Similarity=0.260 Sum_probs=75.0
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
|+|.|.|+|||||||+|+.|++++|+.++|.+.++|+..... |..+.++.+....-|+ +...+...+........
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~---gmsl~ef~~~AE~~p~--iD~~iD~rq~e~a~~~n 75 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARER---GMSLEEFSRYAEEDPE--IDKEIDRRQKELAKEGN 75 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHc---CCCHHHHHHHHhcCch--hhHHHHHHHHHHHHcCC
Confidence 579999999999999999999999999999999999987643 2233333222211111 11222222222211456
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
+|+++.- --++.. ...|+.|||.+|.++..+|+..|.
T Consensus 76 vVlegrL---------A~Wi~k--~~adlkI~L~Apl~vRa~Ria~RE 112 (179)
T COG1102 76 VVLEGRL---------AGWIVR--EYADLKIWLKAPLEVRAERIAKRE 112 (179)
T ss_pred eEEhhhh---------HHHHhc--cccceEEEEeCcHHHHHHHHHHhc
Confidence 8888652 111111 357899999999999999999995
No 27
>PRK08118 topology modulation protein; Reviewed
Probab=99.58 E-value=1.9e-14 Score=107.95 Aligned_cols=100 Identities=21% Similarity=0.296 Sum_probs=72.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
+.|+|+|+|||||||+|+.|++.+++++++.|+++... .....+++.....+...+. ...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~----------------~w~~~~~~~~~~~~~~~~~----~~~ 61 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP----------------NWEGVPKEEQITVQNELVK----EDE 61 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc----------------CCcCCCHHHHHHHHHHHhc----CCC
Confidence 36999999999999999999999999999998875431 0112344444444444443 246
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
||+||....... ..+ ..+|.+|||++|.+++..|+.+|..
T Consensus 62 wVidG~~~~~~~-----~~l----~~~d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 62 WIIDGNYGGTMD-----IRL----NAADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred EEEeCCcchHHH-----HHH----HhCCEEEEEeCCHHHHHHHHHHHHH
Confidence 999996442211 112 1589999999999999999999854
No 28
>PRK08356 hypothetical protein; Provisional
Probab=99.58 E-value=1.6e-14 Score=111.00 Aligned_cols=121 Identities=18% Similarity=0.316 Sum_probs=81.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcC----C---hHHHHH----HHHHHcCCCCC----HH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAK----T---PLGIKA----KEAMDKGELVS----DD 94 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~----~---~~~~~~----~~~~~~~~~~~----~~ 94 (195)
.+.++|+|+|+|||||||+|+.|+ ++|+.+|+.++.+++..... . ..+... ..+++.+..++ ..
T Consensus 3 ~~~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~ 81 (195)
T PRK08356 3 VEKMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGED 81 (195)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcH
Confidence 345789999999999999999996 58999999988654432211 0 111111 12222232233 24
Q ss_pred HHHHHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 95 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 95 ~~~~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
.+.......+.. ...+++||+ ++..+...|.+. ...+|||++|.+++.+|+.+|...
T Consensus 82 ~~~~~~~~~~~~---~~~ividG~-r~~~q~~~l~~~-------~~~vi~l~~~~~~~~~Rl~~R~~~ 138 (195)
T PRK08356 82 ILIRLAVDKKRN---CKNIAIDGV-RSRGEVEAIKRM-------GGKVIYVEAKPEIRFERLRRRGAE 138 (195)
T ss_pred HHHHHHHHHhcc---CCeEEEcCc-CCHHHHHHHHhc-------CCEEEEEECCHHHHHHHHHhcCCc
Confidence 444444444432 235999999 999998887652 237999999999999999999753
No 29
>PRK06217 hypothetical protein; Validated
Probab=99.58 E-value=8.4e-15 Score=111.42 Aligned_cols=106 Identities=21% Similarity=0.311 Sum_probs=73.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
+.|+|+|+|||||||+++.|++.+|+++++.|+++.+.- +... ....+.+.....+...+.. ...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~---~~~ 66 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPT--DPPF----------TTKRPPEERLRLLLEDLRP---REG 66 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccC--CCCc----------cccCCHHHHHHHHHHHHhc---CCC
Confidence 579999999999999999999999999999988765321 1000 0112333333443444422 357
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
||+||++... ...+. ..+|.+|||++|.+++.+|+.+|...
T Consensus 67 ~vi~G~~~~~--~~~~~-------~~~d~~i~Ld~~~~~~~~Rl~~R~~~ 107 (183)
T PRK06217 67 WVLSGSALGW--GDPLE-------PLFDLVVFLTIPPELRLERLRLREFQ 107 (183)
T ss_pred EEEEccHHHH--HHHHH-------hhCCEEEEEECCHHHHHHHHHcCccc
Confidence 9999987532 11111 25789999999999999999999754
No 30
>PRK03839 putative kinase; Provisional
Probab=99.56 E-value=2e-14 Score=108.90 Aligned_cols=101 Identities=19% Similarity=0.273 Sum_probs=68.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
|+|+|+|+|||||||+++.|++++++.++++|+++++... +..... .+ ......+...+.....+..
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~~-----~~~~~~---~~-----~~~~~~l~~~~~~~~~~~~ 67 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGI-----GEEKDD---EM-----EIDFDKLAYFIEEEFKEKN 67 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcCC-----cccCCh---hh-----hcCHHHHHHHHHHhccCCC
Confidence 4799999999999999999999999999999998765311 110000 00 0111222222222222456
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
+|+||+... + ..++.+|+|+++++++.+|+..|.
T Consensus 68 vIidG~~~~----------l----~~~~~vi~L~~~~~~~~~Rl~~R~ 101 (180)
T PRK03839 68 VVLDGHLSH----------L----LPVDYVIVLRAHPKIIKERLKERG 101 (180)
T ss_pred EEEEecccc----------c----cCCCEEEEEECCHHHHHHHHHHcC
Confidence 999986421 1 247889999999999999999886
No 31
>PRK06762 hypothetical protein; Provisional
Probab=99.56 E-value=1.2e-13 Score=103.21 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=74.8
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh--CCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY--CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 109 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~--~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 109 (195)
|++|+|+|+|||||||+|+.|++++ ++.+++.|. ++..+.... ........+.+.......+. .
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~-~r~~l~~~~----------~~~~~~~~~~~~~~~~~~~~---~ 67 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDV-VRRDMLRVK----------DGPGNLSIDLIEQLVRYGLG---H 67 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHH-HHHHhcccc----------CCCCCcCHHHHHHHHHHHHh---C
Confidence 5799999999999999999999998 577788755 444332110 00011122233333333332 2
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 110 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 110 ~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
+..+|+|+..........+..+....+. +..+|||++|.+++.+|..+|..
T Consensus 68 g~~vild~~~~~~~~~~~~~~l~~~~~~-~~~~v~Ldap~e~~~~R~~~R~~ 118 (166)
T PRK06762 68 CEFVILEGILNSDRYGPMLKELIHLFRG-NAYTYYFDLSFEETLRRHSTRPK 118 (166)
T ss_pred CCEEEEchhhccHhHHHHHHHHHHhcCC-CeEEEEEeCCHHHHHHHHhcccc
Confidence 4568889876555555555555444333 44899999999999999999975
No 32
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.55 E-value=4.8e-14 Score=114.98 Aligned_cols=126 Identities=19% Similarity=0.181 Sum_probs=83.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh-CCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 110 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~-~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 110 (195)
+++|++.|+|||||||+|+.|++++ ++.+++.|++ ++.+......+.. .+.......-.......+...+. .+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~-r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~---~g 75 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDL-RQSLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAALK---SG 75 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHH-HHHhcCCCccccc--ccChHHHHHHHHHHHHHHHHHHH---cC
Confidence 3689999999999999999999999 8999999664 4444321111100 00000000000111222233332 24
Q ss_pred CcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCC
Q 029307 111 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPS 164 (195)
Q Consensus 111 ~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~ 164 (195)
..+|+|+++....++..+.+.+...+..+ .+|+|++|.+++.+|+.+|..+..
T Consensus 76 ~~vIid~~~~~~~~~~~~~~la~~~~~~~-~~v~l~~~~e~~~~R~~~R~~~~~ 128 (300)
T PHA02530 76 KSVIISDTNLNPERRRKWKELAKELGAEF-EEKVFDVPVEELVKRNRKRGERAV 128 (300)
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCeE-EEEEeCCCHHHHHHHHHccCcCCC
Confidence 67999999999999888888777766666 579999999999999999964433
No 33
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.53 E-value=9.8e-14 Score=106.62 Aligned_cols=118 Identities=16% Similarity=0.126 Sum_probs=79.0
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCC------CCCHHHH----------
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE------LVSDDLV---------- 96 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~------~~~~~~~---------- 96 (195)
++|+|+|++||||||+++.|++.+|+.+++.|++.++.+..+......+.+.+.... .++...+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 479999999999999999999988999999999999988877777666666554321 1221111
Q ss_pred ------------HHHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 97 ------------VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 97 ------------~~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
...+...+........++++ .|...+. .+. ..+|.+|++++|.+++.+|+.+|+
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e-~pll~E~--~~~-------~~~D~ii~V~a~~e~r~~Rl~~R~ 147 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLV-IPLLFEA--KLT-------DLCSEIWVVDCSPEQQLQRLIKRD 147 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEE-eHHhcCc--chH-------hCCCEEEEEECCHHHHHHHHHHcC
Confidence 11112222222112344555 2322211 111 258999999999999999999995
No 34
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.50 E-value=1.6e-13 Score=98.88 Aligned_cols=110 Identities=20% Similarity=0.266 Sum_probs=82.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQK 111 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 111 (195)
.+.|+|+|-||+||||+|++|++.+|+.+|++++++++.-.- ... +.-.+...++++.+...+...+.+ .
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~-----~gy-DE~y~c~i~DEdkv~D~Le~~m~~----G 76 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLY-----EGY-DEEYKCHILDEDKVLDELEPLMIE----G 76 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcch-----hcc-cccccCccccHHHHHHHHHHHHhc----C
Confidence 457999999999999999999999999999999988775320 000 111234567888888888887765 5
Q ss_pred cEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 112 GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 112 ~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
+.|+|-..... |.+. -+|+||+|.+|.+.+.+|+..|..+
T Consensus 77 g~IVDyHgCd~-----Fper------wfdlVvVLr~~~s~LY~RL~sRgY~ 116 (176)
T KOG3347|consen 77 GNIVDYHGCDF-----FPER------WFDLVVVLRTPNSVLYDRLKSRGYS 116 (176)
T ss_pred CcEEeecccCc-----cchh------heeEEEEEecCchHHHHHHHHcCCC
Confidence 68888433222 2232 3789999999999999999999643
No 35
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.49 E-value=5e-13 Score=98.23 Aligned_cols=116 Identities=19% Similarity=0.239 Sum_probs=72.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCC-C
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS----DDLVVGIIDEAMKKP-S 108 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~-~ 108 (195)
+|+|+|+|||||||+|+.|++.++..+++.|.+...... ..+..+...+ ............... .
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANI----------AKMAAGIPLNDEDRWPWLQALTDALLAKLAS 70 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHH----------HHHHcCCCCCccchhhHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999776543210 0011111111 111111111111111 2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 109 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 109 ~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
.+..+|+|........+..+...+ .+..+ .+|||++|.+++.+|+.+|..+
T Consensus 71 ~~~~vVid~~~~~~~~r~~~~~~~--~~~~~-~~v~l~~~~~~~~~R~~~R~~~ 121 (150)
T cd02021 71 AGEGVVVACSALKRIYRDILRGGA--ANPRV-RFVHLDGPREVLAERLAARKGH 121 (150)
T ss_pred CCCCEEEEeccccHHHHHHHHhcC--CCCCE-EEEEEECCHHHHHHHHHhcccC
Confidence 245688886655555555555443 23333 7999999999999999999644
No 36
>PRK13973 thymidylate kinase; Provisional
Probab=99.48 E-value=1.9e-12 Score=100.84 Aligned_cols=124 Identities=22% Similarity=0.246 Sum_probs=74.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh---CCceeeh--------HHHHHHHHHcC--ChHHHHHHHHHHcCCCCCHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY---CLCHLAT--------GDMLRAAVAAK--TPLGIKAKEAMDKGELVSDDLVVG 98 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~---~~~~i~~--------d~l~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (195)
+++|+|.|++||||||+++.|++++ |+.++.. ++++|+.+..+ ...+......+... ...+.+..
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~~ 80 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVEE 80 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHHH
Confidence 5799999999999999999999999 7777655 56666655421 11111111111111 01112223
Q ss_pred HHHHHHcCCCCCCcEEEeCCCCC------------HHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 99 IIDEAMKKPSCQKGFILDGFPRT------------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 99 ~l~~~l~~~~~~~~~iid~~~~~------------~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
.+...+.. +..+|.|.|..+ ..+...+...+ .....||++|||++|++++.+|+.+|..
T Consensus 81 ~i~~~l~~---g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~-~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~ 151 (213)
T PRK13973 81 VIRPALAR---GKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVA-INGVMPDLTLILDIPAEVGLERAAKRRG 151 (213)
T ss_pred HHHHHHHC---CCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHH-hCCCCCCEEEEEeCCHHHHHHHHHhccC
Confidence 34444433 445677766422 11222332221 2236799999999999999999999964
No 37
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.46 E-value=2.3e-13 Score=104.48 Aligned_cols=117 Identities=21% Similarity=0.158 Sum_probs=76.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcC-----CCCCHHHH-----------
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDDLV----------- 96 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~----------- 96 (195)
.+|+|+|++||||||+++.|++ +|+.+++.|++.++.+..+......+.+.+..+ ..++...+
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 81 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR 81 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence 4799999999999999999998 999999999999998876665555555544322 22322211
Q ss_pred -------H----HHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 97 -------V----GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 97 -------~----~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
- ..+...+........+|++. |.-.+. .+ ...+|.+|++++|.+++.+|+.+|+
T Consensus 82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~-pll~e~--~~-------~~~~D~vi~V~a~~e~~~~Rl~~R~ 146 (194)
T PRK00081 82 KKLEAILHPLIREEILEQLQEAESSPYVVLDI-PLLFEN--GL-------EKLVDRVLVVDAPPETQLERLMARD 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEe-hHhhcC--Cc-------hhhCCeEEEEECCHHHHHHHHHHcC
Confidence 1 11122222222123455553 222211 11 1258999999999999999999985
No 38
>PRK13949 shikimate kinase; Provisional
Probab=99.46 E-value=2.2e-12 Score=96.94 Aligned_cols=108 Identities=19% Similarity=0.268 Sum_probs=68.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
.|+|+|+|||||||+++.|++.+++.+++.|.++.+.... .+.+.+.. +.....+.-..++.. +.. ..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~------~~~~~~~~~g~~~fr~~e~~~l~~-l~~---~~~ 72 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHK------TVGDIFAERGEAVFRELERNMLHE-VAE---FED 72 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCc------cHHHHHHHhCHHHHHHHHHHHHHH-HHh---CCC
Confidence 5999999999999999999999999999998887665431 22222221 111111112223232 222 234
Q ss_pred EEE-eC--CCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcC
Q 029307 113 FIL-DG--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (195)
Q Consensus 113 ~ii-d~--~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R 159 (195)
+|+ +| .+....+...+.+ .+++|||++|.+++.+|+..+
T Consensus 73 ~vis~Ggg~~~~~~~~~~l~~--------~~~vi~L~~~~~~~~~Ri~~~ 114 (169)
T PRK13949 73 VVISTGGGAPCFFDNMELMNA--------SGTTVYLKVSPEVLFVRLRLA 114 (169)
T ss_pred EEEEcCCcccCCHHHHHHHHh--------CCeEEEEECCHHHHHHHHhcC
Confidence 555 43 3344445544432 458999999999999999854
No 39
>PRK07261 topology modulation protein; Provisional
Probab=99.46 E-value=3.9e-13 Score=101.25 Aligned_cols=101 Identities=18% Similarity=0.236 Sum_probs=71.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
+.|+|+|+|||||||+|+.|++.+++++++.|.+..... ....+.+.....+...+.+ ..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~----------------~~~~~~~~~~~~~~~~~~~----~~ 60 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN----------------WQERDDDDMIADISNFLLK----HD 60 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc----------------cccCCHHHHHHHHHHHHhC----CC
Confidence 469999999999999999999999999999976532110 0112233344444554433 34
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
||+||..........+. ..|.+|+|++|..++..|+.+|..
T Consensus 61 wIidg~~~~~~~~~~l~--------~ad~vI~Ld~p~~~~~~R~lkR~~ 101 (171)
T PRK07261 61 WIIDGNYSWCLYEERMQ--------EADQIIFLNFSRFNCLYRAFKRYL 101 (171)
T ss_pred EEEcCcchhhhHHHHHH--------HCCEEEEEcCCHHHHHHHHHHHHH
Confidence 99999876533332222 468999999999999999999864
No 40
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.44 E-value=1.1e-12 Score=98.16 Aligned_cols=111 Identities=23% Similarity=0.293 Sum_probs=71.5
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-CC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAK-TPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS-CQ 110 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~ 110 (195)
|+|+|+|++||||||+++.|++.+|+++++.++++++..... ... ..+....... + .+...+...+.... ..
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~---~--~~~~~~~~~i~~~~~~~ 74 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDL-IEFLNYAEEN---P--EIDKKIDRRIHEIALKE 74 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCH-HHHHHHHhcC---c--HHHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999999988877765421 111 1111111111 1 11122222222221 24
Q ss_pred CcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 111 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 111 ~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
..+|+++..... + + ...++++|+|++|.+++.+|+.+|.
T Consensus 75 ~~~Vi~g~~~~~-----~---~---~~~~d~~v~v~a~~~~r~~R~~~R~ 113 (171)
T TIGR02173 75 KNVVLESRLAGW-----I---V---REYADVKIWLKAPLEVRARRIAKRE 113 (171)
T ss_pred CCEEEEecccce-----e---e---cCCcCEEEEEECCHHHHHHHHHHcc
Confidence 568888764321 0 1 1246789999999999999999986
No 41
>PRK00625 shikimate kinase; Provisional
Probab=99.44 E-value=1.6e-12 Score=97.96 Aligned_cols=116 Identities=14% Similarity=0.071 Sum_probs=68.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
|.|+|+|+|||||||+++.|++++++.+++.|+++++..... ......+.++....-.-......+...+. ....
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~--~~~~i~eif~~~Ge~~fr~~E~~~l~~l~---~~~~ 75 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGA--LYSSPKEIYQAYGEEGFCREEFLALTSLP---VIPS 75 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCC--CCCCHHHHHHHHCHHHHHHHHHHHHHHhc---cCCe
Confidence 469999999999999999999999999999999888754321 00112222222110000011111112222 2223
Q ss_pred EEEeCC--CCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 113 FILDGF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 113 ~iid~~--~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
+|..|. ....+.... +. .-..+|||++|.+++.+|+.+|..
T Consensus 76 VIs~GGg~~~~~e~~~~----l~----~~~~Vv~L~~~~e~l~~Rl~~R~~ 118 (173)
T PRK00625 76 IVALGGGTLMIEPSYAH----IR----NRGLLVLLSLPIATIYQRLQKRGL 118 (173)
T ss_pred EEECCCCccCCHHHHHH----Hh----cCCEEEEEECCHHHHHHHHhcCCC
Confidence 443442 222223222 22 123799999999999999999864
No 42
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.44 E-value=8e-13 Score=100.21 Aligned_cols=116 Identities=21% Similarity=0.238 Sum_probs=76.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCC-----CCCH---------------
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE-----LVSD--------------- 93 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~-----~~~~--------------- 93 (195)
+|+|+|++||||||+++.|++ +|+.+++.|++.++.+..+......+.+.+.... .++.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 589999999999999999999 9999999999999988766666666665543321 1211
Q ss_pred ---HHHHHHHHHH----HcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 94 ---DLVVGIIDEA----MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 94 ---~~~~~~l~~~----l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
..+...+... +........++++ .|...+.. +. ..+|.+|++++|.++..+|+.+|+
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive-~plL~e~~--~~-------~~~D~vv~V~a~~~~ri~Rl~~Rd 143 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAEARKEKVVVLD-IPLLFETG--LE-------KLVDRVIVVDAPPEIQIERLMKRD 143 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCEEEEE-ehHhhcCC--cH-------HhCCeEEEEECCHHHHHHHHHHcC
Confidence 1111222222 2222212344555 33322211 11 257899999999999999999996
No 43
>PRK04182 cytidylate kinase; Provisional
Probab=99.43 E-value=1e-12 Score=99.06 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=70.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
|+|+|+|++||||||+++.|++.+|+++++.++++++...........+.........+ ...+...+.... ....+
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~ 76 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKYAEEDPEI-DKEIDRRQLEIA---EKEDN 76 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHHhhcCchH-HHHHHHHHHHHH---hcCCC
Confidence 58999999999999999999999999999998888776542211111111111111100 111222222111 02456
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
+|+++..... + +. ..++++|||++|.+++.+|+.+|.
T Consensus 77 ~Vi~g~~~~~-----~---~~---~~~~~~V~l~a~~e~~~~Rl~~r~ 113 (180)
T PRK04182 77 VVLEGRLAGW-----M---AK---DYADLKIWLKAPLEVRAERIAERE 113 (180)
T ss_pred EEEEEeecce-----E---ec---CCCCEEEEEECCHHHHHHHHHhcc
Confidence 8888742211 0 11 126789999999999999999885
No 44
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.42 E-value=3.5e-12 Score=110.65 Aligned_cols=136 Identities=18% Similarity=0.219 Sum_probs=100.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 108 (195)
...+.+|+++|+|||||||+|+.++...|+.+||.|++- . ...........+..
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg-~-----------------------~~~~~~~a~~~L~~-- 419 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLG-S-----------------------TQNCLTACERALDQ-- 419 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHH-H-----------------------HHHHHHHHHHHHhC--
Confidence 456779999999999999999999999999999997651 0 01122334444444
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCC--------ceeeCCCCCC-CCC
Q 029307 109 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSG--------RTYHTKFAPP-KVP 179 (195)
Q Consensus 109 ~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g--------~~~~~~~~~~-~~~ 179 (195)
+..+|+|.......++..+.++....+..+ .++++++|.+++++|+..|....... ..|...|.+| ..+
T Consensus 420 -G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v-~~i~~~~p~e~~~~Rn~~R~~~~~s~~~vp~~v~~~~~k~fE~Pt~~E 497 (526)
T TIGR01663 420 -GKRCAIDNTNPDAASRAKFLQCARAAGIPC-RCFLFNAPLAQAKHNIAFRELSDSAHIKIKDMVFNGMKKKFEAPALAE 497 (526)
T ss_pred -CCcEEEECCCCCHHHHHHHHHHHHHcCCeE-EEEEeCCCHHHHHHHHHhhccCCcccCCCCHHHHHHHHhhCCCCCccc
Confidence 667999999999999999999988888877 79999999999999999997532111 1333456555 456
Q ss_pred CCCCCCCCccccC
Q 029307 180 GVDDVSRCNWRTF 192 (195)
Q Consensus 180 ~~~~~~~~~~~~~ 192 (195)
+...+..-++.|+
T Consensus 498 GF~~I~~v~f~~~ 510 (526)
T TIGR01663 498 GFIAIHEINFKPL 510 (526)
T ss_pred CceEEEEEeCccC
Confidence 6666655566653
No 45
>PRK04040 adenylate kinase; Provisional
Probab=99.41 E-value=3.4e-12 Score=97.50 Aligned_cols=123 Identities=17% Similarity=0.124 Sum_probs=73.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh--CCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY--CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 109 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~--~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 109 (195)
+++|+|+|+|||||||+++.|++++ ++.+++.++++++....... .. -++.+..........+.......+.....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~-~~-~~d~~r~l~~~~~~~~~~~a~~~i~~~~~ 79 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGL-VE-HRDEMRKLPPEEQKELQREAAERIAEMAG 79 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCC-CC-CHHHHhhCChhhhHHHHHHHHHHHHHhhc
Confidence 5789999999999999999999999 89999999998776543210 00 01111111111111222233333333333
Q ss_pred CCcEEEeCCCCCHHHHH---HHH-HHHhhcCCCcCEEEEEEcCHHHHHHHHhc
Q 029307 110 QKGFILDGFPRTEVQAQ---KLD-EMLEKQGKKVDKVLNFAIDDAVLEERITG 158 (195)
Q Consensus 110 ~~~~iid~~~~~~~~~~---~l~-~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~ 158 (195)
...+|+|++........ .+. ..+.. ..|+.+|++.++++++.+|...
T Consensus 80 ~~~~~~~~h~~i~~~~g~~~~~~~~~~~~--l~pd~ii~l~a~p~~i~~Rrl~ 130 (188)
T PRK04040 80 EGPVIVDTHATIKTPAGYLPGLPEWVLEE--LNPDVIVLIEADPDEILMRRLR 130 (188)
T ss_pred CCCEEEeeeeeeccCCCCcCCCCHHHHhh--cCCCEEEEEeCCHHHHHHHHhc
Confidence 44589998542111100 010 11111 3689999999999999888774
No 46
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.41 E-value=1.2e-12 Score=100.68 Aligned_cols=54 Identities=22% Similarity=0.206 Sum_probs=45.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD 86 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~ 86 (195)
.++|.|+|.|||||||+|+.+++ +|++++++|++.++...++......+.+.+.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG 55 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFG 55 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcC
Confidence 36899999999999999999999 9999999999999888776555555554443
No 47
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.41 E-value=6.8e-13 Score=98.14 Aligned_cols=106 Identities=22% Similarity=0.305 Sum_probs=72.0
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
|+|+|+|.||+||||+|++|+ .+|+.+++..+++.+.-. .... +.......++.+.+...+...+ ....
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~-----~~~~-de~r~s~~vD~d~~~~~le~~~----~~~~ 69 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGL-----YTEY-DELRKSVIVDVDKLRKRLEELL----REGS 69 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCC-----eecc-CCccceEEeeHHHHHHHHHHHh----ccCC
Confidence 589999999999999999999 899999999887665421 0000 0000112233444444444443 2346
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
.|+|++. ..++ +.+|+||.|.++++.+.+|++.|+..
T Consensus 70 ~Ivd~H~---------~hl~----~~~dlVvVLR~~p~~L~~RLk~RGy~ 106 (180)
T COG1936 70 GIVDSHL---------SHLL----PDCDLVVVLRADPEVLYERLKGRGYS 106 (180)
T ss_pred eEeechh---------hhcC----CCCCEEEEEcCCHHHHHHHHHHcCCC
Confidence 8888662 2222 25899999999999999999999754
No 48
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.40 E-value=6.1e-12 Score=93.70 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=70.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHH-HHHHHHHHcCCCCCC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV-VGIIDEAMKKPSCQK 111 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~ 111 (195)
+.|+|+|++||||||+.+.|++.+|+.+++.|.++.+... ..+.+.+...+.-.-... ...+...+... .
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g------~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~---~ 73 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG------MSIAEIFEEEGEEGFRRLETEVLKELLEED---N 73 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHC------cCHHHHHHHHhHHHHHHHHHHHHHHHhhcC---C
Confidence 4699999999999999999999999999999998877653 333343333211111111 22223222221 2
Q ss_pred cEEEeCC--CCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcC
Q 029307 112 GFILDGF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (195)
Q Consensus 112 ~~iid~~--~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R 159 (195)
.+|-.|. ....+.+..+.+ .. .+|||++|.+++.+|+...
T Consensus 74 ~ViaTGGG~v~~~enr~~l~~-------~g-~vv~L~~~~e~l~~Rl~~~ 115 (172)
T COG0703 74 AVIATGGGAVLSEENRNLLKK-------RG-IVVYLDAPFETLYERLQRD 115 (172)
T ss_pred eEEECCCccccCHHHHHHHHh-------CC-eEEEEeCCHHHHHHHhccc
Confidence 3444443 234445555443 12 7999999999999999943
No 49
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=6.7e-13 Score=96.28 Aligned_cols=131 Identities=19% Similarity=0.219 Sum_probs=93.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHH----HcCC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEA----MKKP 107 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----l~~~ 107 (195)
+-.|+|.|++||||||+++.|++++++.+++.||+-.... .+.|..+..++++..+..+... ....
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~N----------veKM~~GipLnD~DR~pWL~~i~~~~~~~l 81 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPAN----------VEKMTQGIPLNDDDRWPWLKKIAVELRKAL 81 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHH----------HHHHhcCCCCCcccccHHHHHHHHHHHHHh
Confidence 3479999999999999999999999999999988743332 2556677777665544333321 1223
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHHHhh-----cC-CCcCEEEEEEcCHHHHHHHHhcCCCCCCCCceeeCCC
Q 029307 108 SCQKGFILDGFPRTEVQAQKLDEMLEK-----QG-KKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKF 173 (195)
Q Consensus 108 ~~~~~~iid~~~~~~~~~~~l~~~l~~-----~~-~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~~~~~~ 173 (195)
..+.++|+.+......++..|...+.. .. .+. .+|||.++.+++.+|+..|..|.......+..|
T Consensus 82 ~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l-~fi~l~~s~evi~~Rl~~R~gHFMp~~lleSQf 152 (191)
T KOG3354|consen 82 ASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQL-HFILLSASFEVILKRLKKRKGHFMPADLLESQF 152 (191)
T ss_pred hcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceE-EEeeeeccHHHHHHHHhhcccccCCHHHHHHHH
Confidence 346788888776666666666654441 11 233 689999999999999999998777666555555
No 50
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.38 E-value=3.4e-12 Score=97.63 Aligned_cols=152 Identities=20% Similarity=0.244 Sum_probs=88.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCCCC-
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD-DLVVGIIDEAMKKPSCQ- 110 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~- 110 (195)
++|.|-||+||||||+|+.|+++||+.|++.+-++|..... .++.+..+.+ ..+..++. .+.-....
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~----------~l~~~~~~~d~~~~~~l~~-~~~i~f~~~ 73 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALA----------ALKHGVDLDDEDALVALAK-ELDISFVND 73 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHH----------HHHcCCCCccHHHHHHHHH-hCCceeccc
Confidence 78999999999999999999999999999999888876431 1222222222 22222222 11111111
Q ss_pred CcEEEeCCCCCHHH------------------HHHHH---HHHhhc---------------CCCcCEEEEEEcCHHHHHH
Q 029307 111 KGFILDGFPRTEVQ------------------AQKLD---EMLEKQ---------------GKKVDKVLNFAIDDAVLEE 154 (195)
Q Consensus 111 ~~~iid~~~~~~~~------------------~~~l~---~~l~~~---------------~~~~d~vi~l~~~~e~~~~ 154 (195)
..+.++|...+..- +..+. +.+... -+..++-|||+++++++.+
T Consensus 74 ~~v~l~gedvs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGTvV~PdA~lKiFLtAS~e~RA~ 153 (222)
T COG0283 74 DRVFLNGEDVSEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGTVVFPDAELKIFLTASPEERAE 153 (222)
T ss_pred ceEEECCchhhhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcceECCCCCeEEEEeCCHHHHHH
Confidence 22444433221100 00000 011111 1566789999999999887
Q ss_pred HHhcCCCCCCCCceeeCCCCCCCCCCCCCCCCC--ccccCCCC
Q 029307 155 RITGRWIHPSSGRTYHTKFAPPKVPGVDDVSRC--NWRTFDST 195 (195)
Q Consensus 155 Rl~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 195 (195)
|-.+-.........|+.........+.-|.+++ ||+|++|+
T Consensus 154 RR~~q~~~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA 196 (222)
T COG0283 154 RRYKQLQAKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDA 196 (222)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCe
Confidence 765544333322237776666666666666666 89998875
No 51
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.38 E-value=1.4e-12 Score=99.58 Aligned_cols=117 Identities=19% Similarity=0.218 Sum_probs=74.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHH-----cCCCCCHHHH------------
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-----KGELVSDDLV------------ 96 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------------ 96 (195)
+|+|+|.+||||||+++.|++..++.+++.|++.++.+..+......+.+.+. ..+.+....+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 58999999999999999999987899999999998888766654444443332 1212221111
Q ss_pred ----------HHHHHHHHcCCCC-CCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 97 ----------VGIIDEAMKKPSC-QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 97 ----------~~~l~~~l~~~~~-~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
...+...+..... +..++++ .|...+. .+. ..+|.+|++++|.+++.+|+.+|+
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~-~pll~e~--~~~-------~~~D~vv~V~~~~~~~~~Rl~~R~ 145 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLD-VPLLFEN--KLR-------SLCDRVIVVDVSPQLQLERLMQRD 145 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEE-chHhhhC--CcH-------HhCCEEEEEECCHHHHHHHHHHcC
Confidence 1222222322211 2245555 3322211 111 257899999999999999999996
No 52
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.38 E-value=1.3e-12 Score=98.95 Aligned_cols=117 Identities=18% Similarity=0.179 Sum_probs=76.0
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcC-----CCCCHHHH-----------
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDDLV----------- 96 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~----------- 96 (195)
|+|+|+|+.||||||+++.|++ +|+.+|+.|++.++.+..+......+.+.+... +.++...+
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 5899999999999999999988 999999999998888877776666666655433 22222211
Q ss_pred -----------HHHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 97 -----------VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 97 -----------~~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
...+...+........++++ .|.-.+. .+ ...+|.+|++.+|.++..+|+++|+
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e-~pLL~E~--~~-------~~~~D~vi~V~a~~e~ri~Rl~~R~ 144 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVE-IPLLFES--GL-------EKLCDEVIVVYAPEEIRIKRLMERD 144 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE--TTTTTT--TG-------GGGSSEEEEEE--HHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCEEEEE-cchhhhh--hH-------hhhhceEEEEECCHHHHHHHHHhhC
Confidence 12222222222222455666 3332221 11 1358999999999999999999995
No 53
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.37 E-value=3e-12 Score=98.73 Aligned_cols=117 Identities=20% Similarity=0.214 Sum_probs=75.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHH----------------
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV---------------- 96 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 96 (195)
++|+|+|++||||||+++.|++ +|+++|+.|++.++.+..+......+.+.+..+...++..+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 3799999999999999999987 89999999999999888777666767666655433221111
Q ss_pred -----------HHHHHHHHcCC-CCC-CcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 97 -----------VGIIDEAMKKP-SCQ-KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 97 -----------~~~l~~~l~~~-~~~-~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
...+...+... ..+ ..++++ .|.-.+. .....+|.+|++++|.+++.+|+.+|+
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e-~plL~e~---------g~~~~~D~vi~V~a~~e~ri~Rl~~R~ 147 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYD-MPLLVEK---------GLDRKMDLVVVVDVDVEERVRRLVEKR 147 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEE-eeceeEc---------CccccCCeEEEEECCHHHHHHHHHHcC
Confidence 01111111110 011 123333 2211110 011358999999999999999999984
No 54
>PRK06547 hypothetical protein; Provisional
Probab=99.36 E-value=2.5e-12 Score=96.88 Aligned_cols=127 Identities=14% Similarity=0.050 Sum_probs=72.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHH-HcCCC--CCHHHHHHHHHHHHc
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAM-DKGEL--VSDDLVVGIIDEAMK 105 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~l~~~l~ 105 (195)
...+++|+|.|++||||||+++.|++.+++.+++.|+++...-. -....+.+...+ ..+.. .+.+....... ...
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~-~~~ 89 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHG-LAAASEHVAEAVLDEGRPGRWRWDWANNRPG-DWV 89 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccccc-CChHHHHHHHHHHhCCCCceecCCCCCCCCC-CcE
Confidence 45678999999999999999999999999999999887643110 010111122222 11111 00000000000 001
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 106 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 106 ~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
.......+|++|....... +...+... . .-++|||++|.+++.+|+.+|..+
T Consensus 90 ~l~~~~vVIvEG~~al~~~---~r~~~d~~-g-~v~~I~ld~~~~vr~~R~~~Rd~~ 141 (172)
T PRK06547 90 SVEPGRRLIIEGVGSLTAA---NVALASLL-G-EVLTVWLDGPEALRKERALARDPD 141 (172)
T ss_pred EeCCCCeEEEEehhhccHH---HHHHhccC-C-CEEEEEEECCHHHHHHHHHhcCch
Confidence 1123346788886433222 33322211 1 228999999999999999999754
No 55
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.36 E-value=6.4e-12 Score=95.90 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i 61 (195)
-++|+|.|+.|+||||+++.|+++++...+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence 368999999999999999999999996544
No 56
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.34 E-value=1.4e-11 Score=98.14 Aligned_cols=113 Identities=23% Similarity=0.240 Sum_probs=71.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC-----CceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~-----~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 108 (195)
+|+|+|+|||||||+|+.|++.++ +.+++. +.+++.+... ........ .+.....+...+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~~---~~~~e~~~-------~~~~~~~i~~~l~~-- 67 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPVW---KEKYEEFI-------RDSTLYLIKTALKN-- 67 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHHh---hHHhHHHH-------HHHHHHHHHHHHhC--
Confidence 489999999999999999999872 345555 4455543210 00000100 11223344444433
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 109 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 109 ~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
+..+|+|+.+.....+..+.......+. +..+||+++|.+++.+|...|..
T Consensus 68 -~~~VI~D~~~~~~~~r~~l~~~ak~~~~-~~~~I~l~~p~e~~~~Rn~~R~~ 118 (249)
T TIGR03574 68 -KYSVIVDDTNYYNSMRRDLINIAKEYNK-NYIIIYLKAPLDTLLRRNIERGE 118 (249)
T ss_pred -CCeEEEeccchHHHHHHHHHHHHHhCCC-CEEEEEecCCHHHHHHHHHhCCC
Confidence 3468999876555555566655555443 34799999999999999998853
No 57
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.34 E-value=3.8e-11 Score=88.30 Aligned_cols=109 Identities=15% Similarity=0.165 Sum_probs=64.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCcEE
Q 029307 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFI 114 (195)
Q Consensus 35 I~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i 114 (195)
|+|+|+|||||||+++.|++.+|+.+++.|+++...... ........ .+ .......-...+........+|
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~~---~~----~~~~~~~e~~~~~~~~~~~~~v 72 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIPEIFAE---EG----EEGFRELEREVLLLLLTKENAV 72 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHHHHHHH---HC----HHHHHHHHHHHHHHHhccCCcE
Confidence 889999999999999999999999999998877655432 11111111 11 1111111111111111123455
Q ss_pred EeCCC---CCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 115 LDGFP---RTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 115 id~~~---~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
++... ..... .+.+. ....+|||++|.+++.+|+.+|.
T Consensus 73 i~~g~~~i~~~~~----~~~~~----~~~~~i~l~~~~e~~~~R~~~r~ 113 (154)
T cd00464 73 IATGGGAVLREEN----RRLLL----ENGIVVWLDASPEELLERLARDK 113 (154)
T ss_pred EECCCCccCcHHH----HHHHH----cCCeEEEEeCCHHHHHHHhccCC
Confidence 55322 22222 11121 23479999999999999999885
No 58
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.34 E-value=4.5e-13 Score=94.83 Aligned_cols=107 Identities=24% Similarity=0.350 Sum_probs=60.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCC----CHHHHHHHHHHHHcCCCC
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELV----SDDLVVGIIDEAMKKPSC 109 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~l~~~~~ 109 (195)
+|+|.|+|||||||+|+.|++++|+.+++.|+++....... ......- ..+.+...+..... ...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~-~~~ 69 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIE----------RDDDEREYIDADIDLLDDILEQLQN-KPD 69 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCH----------GCTTCCHHHHHHHHHHHHHHHHHHE-TTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccc----------cCcchhhHHHHHHHHHHHHHHhhhc-cCC
Confidence 68999999999999999999999999999999542211100 0000000 01112222222222 223
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 110 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 110 ~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
...||+++... ......+ ...+.+||+.++.+++.+|+.+|+
T Consensus 70 ~~~~ii~g~~~-~~~~~~~--------~~~~~~i~l~~~~~~~~~~~~~R~ 111 (121)
T PF13207_consen 70 NDNWIIDGSYE-SEMEIRL--------PEFDHVIYLDAPDEECRERRLKRR 111 (121)
T ss_dssp --EEEEECCSC-HCCHSCC--------HHGGCEEEEEEEEHHHHHHHHHHH
T ss_pred CCeEEEeCCCc-cchhhhh--------hcCCEEEEEECCCHHHHHHHHHHH
Confidence 45799998422 1110011 124578899988886666655553
No 59
>PLN02422 dephospho-CoA kinase
Probab=99.33 E-value=1.3e-11 Score=96.86 Aligned_cols=116 Identities=21% Similarity=0.118 Sum_probs=73.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcC-----CCCCHHHH------------
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDDLV------------ 96 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------------ 96 (195)
+|+|+|++||||||+++.|+ ++|+.+++.|++.++.+..+......+.+.+... +.++...+
T Consensus 3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~~ 81 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKRQ 81 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHHH
Confidence 79999999999999999998 5899999999999998886654444444433221 12222111
Q ss_pred ------HHHH----HHHHcCC--CCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 97 ------VGII----DEAMKKP--SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 97 ------~~~l----~~~l~~~--~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
-..+ ...+... .....+++| .|.-.+. . ....+|.+|++++|.+++.+|+.+|+
T Consensus 82 ~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~e-ipLL~E~--~-------~~~~~D~vI~V~a~~e~ri~RL~~R~ 147 (232)
T PLN02422 82 LLNRLLAPYISSGIFWEILKLWLKGCKVIVLD-IPLLFET--K-------MDKWTKPVVVVWVDPETQLERLMARD 147 (232)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEE-ehhhhhc--c-------hhhhCCEEEEEECCHHHHHHHHHHcC
Confidence 1111 1111111 111244555 3332221 1 11358999999999999999999996
No 60
>PRK08233 hypothetical protein; Provisional
Probab=99.33 E-value=2.6e-12 Score=97.08 Aligned_cols=116 Identities=13% Similarity=0.112 Sum_probs=62.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhC-CceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYC-LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS- 108 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~-~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~- 108 (195)
++++|+|+|+|||||||+|+.|+++++ ...+..|.+ ..... ......++..+... .......+...+....
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~-~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 74 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY-DFDNC-----PEDICKWIDKGANY-SEWVLTPLIKDIQELIA 74 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE-EcccC-----chhhhhhhhccCCh-hhhhhHHHHHHHHHHHc
Confidence 357999999999999999999999996 333333221 11000 01112222222222 1122222222222111
Q ss_pred -CCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 109 -CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 109 -~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
....+|+..++...... .+. ..+|++|||++|.+++.+|+.+|..
T Consensus 75 ~~~~~~vivd~~~~~~~~-~~~-------~~~d~~i~l~~~~~~~~~R~~~R~~ 120 (182)
T PRK08233 75 KSNVDYIIVDYPFAYLNS-EMR-------QFIDVTIFIDTPLDIAMARRILRDF 120 (182)
T ss_pred CCCceEEEEeeehhhccH-HHH-------HHcCEEEEEcCCHHHHHHHHHHHHh
Confidence 11244444444432111 111 2478999999999999999888853
No 61
>PRK13948 shikimate kinase; Provisional
Probab=99.32 E-value=3.7e-11 Score=91.21 Aligned_cols=111 Identities=16% Similarity=0.149 Sum_probs=68.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKPS 108 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~ 108 (195)
+++..|+|+|++||||||+++.|++++|+.+++.|.++.+... ..+.+.++. +...-.+.-...+...+..
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g------~si~~if~~~Ge~~fR~~E~~~l~~l~~~-- 79 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTG------KSIPEIFRHLGEAYFRRCEAEVVRRLTRL-- 79 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHh------CCHHHHHHHhCHHHHHHHHHHHHHHHHhc--
Confidence 4567899999999999999999999999999999877766543 233333322 2111111112222222221
Q ss_pred CCCcEEEe---CCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhc
Q 029307 109 CQKGFILD---GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG 158 (195)
Q Consensus 109 ~~~~~iid---~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~ 158 (195)
.+.||. |.+....+...+.+ ...+|||+++++++.+|+..
T Consensus 80 --~~~VIa~GgG~v~~~~n~~~l~~--------~g~vV~L~~~~e~l~~Rl~~ 122 (182)
T PRK13948 80 --DYAVISLGGGTFMHEENRRKLLS--------RGPVVVLWASPETIYERTRP 122 (182)
T ss_pred --CCeEEECCCcEEcCHHHHHHHHc--------CCeEEEEECCHHHHHHHhcC
Confidence 234444 23334444444332 23689999999999999943
No 62
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.31 E-value=2.4e-11 Score=90.52 Aligned_cols=109 Identities=20% Similarity=0.182 Sum_probs=64.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCC----HHHH---HHHHHHHHcCC
Q 029307 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS----DDLV---VGIIDEAMKKP 107 (195)
Q Consensus 35 I~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~l~~~l~~~ 107 (195)
|+|.|++||||||+++.|++.++..+++.|++....... .+..+.... .... ...+...+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 69 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIE----------KMSAGIPLNDDDRWPWLQNLNDASTAAAAK- 69 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHH----------HHHcCCCCChhhHHHHHHHHHHHHHHHHhc-
Confidence 578999999999999999999999999998864221100 000000010 0111 1222222222
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 108 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 108 ~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
+...|++........+..+ ...+..+ .++||++|.+++.+|+.+|..
T Consensus 70 --~~~~Vi~~t~~~~~~r~~~----~~~~~~~-~~i~l~~~~e~~~~R~~~R~~ 116 (163)
T TIGR01313 70 --NKVGIITCSALKRHYRDIL----REAEPNL-HFIYLSGDKDVILERMKARKG 116 (163)
T ss_pred --CCCEEEEecccHHHHHHHH----HhcCCCE-EEEEEeCCHHHHHHHHHhccC
Confidence 3334666554433333333 2333333 579999999999999999963
No 63
>PRK13975 thymidylate kinase; Provisional
Probab=99.31 E-value=3.3e-11 Score=92.28 Aligned_cols=115 Identities=19% Similarity=0.277 Sum_probs=66.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHH--------HH---HHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV--------VG---IID 101 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~l~ 101 (195)
++|+|.|++||||||+++.|+++++..+... ..+...|+.+++.+... ...+... .+ .+.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~--------~~~~~~g~~ir~~~~~~-~~~~~~~~~~f~~~r~~~~~~i~ 73 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAFWTCE--------PTDGKIGKLIREILSGS-KCDKETLALLFAADRVEHVKEIE 73 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeeEC--------CCCChHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998532211 01122344444444332 1222111 01 111
Q ss_pred HHHcCCCCCCcEEEeCCCCCH-HHH------HHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 102 EAMKKPSCQKGFILDGFPRTE-VQA------QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 102 ~~l~~~~~~~~~iid~~~~~~-~~~------~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
..+. ...+|+|.+.... ... ..+...+......|+++|||++|++++.+|+..|.
T Consensus 74 ~~~~----~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~ 135 (196)
T PRK13975 74 EDLK----KRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRD 135 (196)
T ss_pred HHHc----CCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccC
Confidence 1221 2457888664321 110 01111122223468999999999999999999986
No 64
>PRK13947 shikimate kinase; Provisional
Probab=99.31 E-value=2.7e-11 Score=90.82 Aligned_cols=111 Identities=16% Similarity=0.242 Sum_probs=65.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
.|+|.|+|||||||+++.|++.+|+++++.|.++++.. +. ...+.+.. +...-.+.-...+. .+.. ...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~--g~----~~~~~~~~~ge~~~~~~e~~~~~-~l~~---~~~ 72 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT--GM----TVAEIFEKDGEVRFRSEEKLLVK-KLAR---LKN 72 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc--CC----cHHHHHHHhChHHHHHHHHHHHH-HHhh---cCC
Confidence 49999999999999999999999999999988766552 11 11122211 11000111111222 2221 122
Q ss_pred EEEe-C--CCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 113 FILD-G--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 113 ~iid-~--~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
.|+. + +.....+... +.. ...+|||+++++++.+|+..|...
T Consensus 73 ~vi~~g~g~vl~~~~~~~----l~~----~~~vv~L~~~~~~l~~Rl~~r~~r 117 (171)
T PRK13947 73 LVIATGGGVVLNPENVVQ----LRK----NGVVICLKARPEVILRRVGKKKSR 117 (171)
T ss_pred eEEECCCCCcCCHHHHHH----HHh----CCEEEEEECCHHHHHHHhcCCCCC
Confidence 3333 2 2233333322 222 247999999999999999987543
No 65
>PRK13946 shikimate kinase; Provisional
Probab=99.31 E-value=8.3e-11 Score=89.54 Aligned_cols=116 Identities=22% Similarity=0.174 Sum_probs=70.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 110 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 110 (195)
.++.|+|+|++||||||+++.|++.+|+++++.|.++.+.. +......+.. .+.......-...+...+.. .
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e~~~~---~ge~~~~~~e~~~l~~l~~~---~ 80 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAEIFAA---YGEPEFRDLERRVIARLLKG---G 80 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHHHHHH---HCHHHHHHHHHHHHHHHHhc---C
Confidence 34689999999999999999999999999999977655443 2222221111 11000011112333333322 2
Q ss_pred CcEEEeCC--CCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 111 KGFILDGF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 111 ~~~iid~~--~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
..+|..+. ......+..+.+ ..++|||++|.+++.+|+..|...
T Consensus 81 ~~Vi~~ggg~~~~~~~r~~l~~--------~~~~v~L~a~~e~~~~Rl~~r~~r 126 (184)
T PRK13946 81 PLVLATGGGAFMNEETRAAIAE--------KGISVWLKADLDVLWERVSRRDTR 126 (184)
T ss_pred CeEEECCCCCcCCHHHHHHHHc--------CCEEEEEECCHHHHHHHhcCCCCC
Confidence 23444433 233333333322 237899999999999999988643
No 66
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.30 E-value=2e-12 Score=94.21 Aligned_cols=104 Identities=23% Similarity=0.281 Sum_probs=65.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCcE
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGF 113 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 113 (195)
+|+|+|+|||||||+|+.|++++|+++++.+.+..+.+.. .... .. ....+...+...+........|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~------~~~~-~~-----~~~~i~~~l~~~~~~~~~~~~~ 68 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGK------LASE-VA-----AIPEVRKALDERQRELAKKPGI 68 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHH------HHHH-hc-----ccHhHHHHHHHHHHHHhhCCCE
Confidence 5899999999999999999999999999997432222110 0000 00 0011222222222222223469
Q ss_pred EEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 114 ILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 114 iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
|+||...... + ...++++|||++|++.+.+|+.+|.
T Consensus 69 Vidg~~~~~~--------~---~~~~~~~i~l~~~~~~r~~R~~~r~ 104 (147)
T cd02020 69 VLEGRDIGTV--------V---FPDADLKIFLTASPEVRAKRRAKQL 104 (147)
T ss_pred EEEeeeeeeE--------E---cCCCCEEEEEECCHHHHHHHHHHHH
Confidence 9998743211 0 1246799999999999999999954
No 67
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.30 E-value=1.5e-11 Score=94.93 Aligned_cols=120 Identities=18% Similarity=0.152 Sum_probs=73.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcC----CCCCHHHH----------
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG----ELVSDDLV---------- 96 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---------- 96 (195)
.|.+|+|+|++||||||+++.|++.+|+.+++.|.+.++.+.. ......+.+.+..+ ..++...+
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~ 83 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEA 83 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHH
Confidence 4578999999999999999999998999999998888877653 22223233222111 11211111
Q ss_pred ------------HHHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 97 ------------VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 97 ------------~~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
...+...+... ....+++| .|.-.+....+ ...+|.+|++.+|.++..+|+++|+
T Consensus 84 ~~~Le~i~HP~V~~~~~~~~~~~-~~~~vv~e-ipLL~E~~~~~-------~~~~D~vi~V~a~~e~ri~Rl~~Rd 150 (204)
T PRK14733 84 KKWLEDYLHPVINKEIKKQVKES-DTVMTIVD-IPLLGPYNFRH-------YDYLKKVIVIKADLETRIRRLMERD 150 (204)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhc-CCCeEEEE-echhhhccCch-------hhhCCEEEEEECCHHHHHHHHHHcC
Confidence 11222222222 12245555 33222211000 1247899999999999999999996
No 68
>PLN02924 thymidylate kinase
Probab=99.30 E-value=1.5e-11 Score=96.09 Aligned_cols=124 Identities=17% Similarity=0.169 Sum_probs=77.4
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHH-----------
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVV----------- 97 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 97 (195)
++++++|+|.|++||||||+++.|++.++...++. .++++ ...++..|+.+++++.....++.....
T Consensus 13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~e-p~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~ 90 (220)
T PLN02924 13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRF-PDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKR 90 (220)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeC-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 46678999999999999999999999996554443 22222 122456677777777654333332210
Q ss_pred HHHHHHHcCCCCCCcEEEeCCCCCHHHHH-------HHHHHHhhcCCCcCEEEEEEcCHHHHHHHHh
Q 029307 98 GIIDEAMKKPSCQKGFILDGFPRTEVQAQ-------KLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 157 (195)
Q Consensus 98 ~~l~~~l~~~~~~~~~iid~~~~~~~~~~-------~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~ 157 (195)
..+...+ ..+..+|.|.|.....-+. .+...+......||++|||++|++++.+|..
T Consensus 91 ~~I~pal---~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~ 154 (220)
T PLN02924 91 SLMERKL---KSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGG 154 (220)
T ss_pred HHHHHHH---HCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhc
Confidence 1122222 2355788887754321111 1112233334679999999999999999964
No 69
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.30 E-value=1.6e-11 Score=95.34 Aligned_cols=121 Identities=14% Similarity=0.113 Sum_probs=72.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcC-------C--CCCHHHH-----
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-------E--LVSDDLV----- 96 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~----- 96 (195)
.+++|+|+|++||||||+++.|+. +|+.+++.|.+.++....+......+...+... . .++...+
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf 82 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF 82 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence 457899999999999999999987 899999998888777654433222222222111 0 0211111
Q ss_pred -----------------HHHHHHHHcCC-CCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhc
Q 029307 97 -----------------VGIIDEAMKKP-SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG 158 (195)
Q Consensus 97 -----------------~~~l~~~l~~~-~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~ 158 (195)
...+...+... ..+..+++-+.|.-.+.. ....+|.+|++++|.+++.+|+.+
T Consensus 83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~~---------~~~~~d~ii~V~a~~e~~~~Rl~~ 153 (208)
T PRK14731 83 SDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFESG---------GDAGLDFIVVVAADTELRLERAVQ 153 (208)
T ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeecC---------chhcCCeEEEEECCHHHHHHHHHH
Confidence 11112222211 112234443344322210 113578999999999999999999
Q ss_pred CCC
Q 029307 159 RWI 161 (195)
Q Consensus 159 R~~ 161 (195)
|+.
T Consensus 154 R~~ 156 (208)
T PRK14731 154 RGM 156 (208)
T ss_pred cCC
Confidence 963
No 70
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.29 E-value=5.6e-11 Score=90.92 Aligned_cols=121 Identities=15% Similarity=0.098 Sum_probs=65.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehH--------HHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATG--------DMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 105 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d--------~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 105 (195)
+|+|.|++||||||+++.|++++++.++.-. .++++..............++ -.. ..+.+...+.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~~~~~~~~~l~~~~~~~~~~~~~~q~~~------~~~-r~~~~~~~~~ 73 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVEPDVEGNPFLEKFYEDPKRWAFPFQLYF------LLS-RLKQYKDALE 73 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCccccccccccCCCCCCHHHHHhCHHhccHHHHHHH------HHH-HHHHHHHHHh
Confidence 4899999999999999999998876544321 112221110000000000000 000 0111111221
Q ss_pred CCCCCCcEEEeCCCCCHH---------------HHH---HHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 106 KPSCQKGFILDGFPRTEV---------------QAQ---KLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 106 ~~~~~~~~iid~~~~~~~---------------~~~---~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
....+..+|+|.++.... ... .+...+......||++|||+++++++.+|+.+|..
T Consensus 74 ~~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~r 147 (193)
T cd01673 74 HLSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRGR 147 (193)
T ss_pred hcccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcCc
Confidence 122356789997654321 011 12222222245799999999999999999999864
No 71
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.29 E-value=2.3e-11 Score=96.24 Aligned_cols=52 Identities=21% Similarity=0.180 Sum_probs=43.5
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEA 84 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~ 84 (195)
++|+|+|++||||||+++.|++++|+++|+.|.+.++...++......+.+.
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~ 53 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAAR 53 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHH
Confidence 3799999999999999999999899999999999998877665544444443
No 72
>PRK13974 thymidylate kinase; Provisional
Probab=99.28 E-value=1.9e-11 Score=95.15 Aligned_cols=130 Identities=19% Similarity=0.170 Sum_probs=73.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeeh--HHHHHHHHHcCChHHHHHHHHHHcC--CCCCHHHHHHHH-------
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLRAAVAAKTPLGIKAKEAMDKG--ELVSDDLVVGII------- 100 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~--d~l~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l------- 100 (195)
+.+|+|.|++||||||+++.|++.+.....-. .+.+.-....++..|+.+++++... ...++.....++
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~ 82 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQ 82 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999999884211100 0000000122566788888887532 222222221111
Q ss_pred --HHHHcC-CCCCCcEEEe----------CCCCCH--HHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 101 --DEAMKK-PSCQKGFILD----------GFPRTE--VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 101 --~~~l~~-~~~~~~~iid----------~~~~~~--~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
...+.. +..+..+|.| ++++.. .+...+...+. .+..||++|||++|++++.+|+..|..+
T Consensus 83 ~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~-~~~~pd~~i~ld~~~~~~~~R~~~R~dD 158 (212)
T PRK13974 83 HVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIAT-QGLSPDLTFFLEISVEESIRRRKNRKPD 158 (212)
T ss_pred HHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHh-CCCCCCEEEEEeCCHHHHHHHHHhcccC
Confidence 111111 1223344444 444432 22344444322 3457999999999999999999988533
No 73
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.28 E-value=1.8e-11 Score=94.22 Aligned_cols=122 Identities=24% Similarity=0.230 Sum_probs=68.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCC---ceeehHHHHHHHHHcCChHHHHHHHHHHc--CCCCCHHHHH-------HH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCL---CHLATGDMLRAAVAAKTPLGIKAKEAMDK--GELVSDDLVV-------GI 99 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~---~~i~~d~l~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------~~ 99 (195)
+++|+|.|++||||||+++.|++.++. .++.. .... +...++.+++.+.. ....+..... ..
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~-----~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 76 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFT-----REPG-GTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQH 76 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEe-----eCCC-CChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHH
Confidence 579999999999999999999998732 11111 0111 22344555555542 1111111111 11
Q ss_pred HHHHHc-CCCCCCcEEEeCCCCCH------------HHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 100 IDEAMK-KPSCQKGFILDGFPRTE------------VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 100 l~~~l~-~~~~~~~~iid~~~~~~------------~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
+...+. ....+..+|+|.+.... .....+...+. ....||++|||++|++++.+|+.+|.
T Consensus 77 ~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~-~~~~pd~~i~l~~~~~~~~~Rl~~R~ 149 (205)
T PRK00698 77 LEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFAL-GGFRPDLTLYLDVPPEVGLARIRARG 149 (205)
T ss_pred HHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHh-CCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 111111 11234568888554322 12223333322 22569999999999999999999996
No 74
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.28 E-value=4.7e-11 Score=89.39 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=67.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 110 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 110 (195)
.+++|+|+|+|||||||+++.|++.+|+.+++.|+++..... ......+.. .+...-.......+...... .
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g--~~~~~~~~~---~g~~~~~~~~~~~~~~l~~~---~ 74 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAG--KSIPEIFEE---EGEAAFRELEEEVLAELLAR---H 74 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CCHHHHHHH---HCHHHHHHHHHHHHHHHHhc---C
Confidence 467999999999999999999999999999999887765432 112111111 11000011112223332221 1
Q ss_pred CcEEEeCCC--CCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 111 KGFILDGFP--RTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 111 ~~~iid~~~--~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
..+|..+.. .....+. .+.. ...+|||++|.+.+.+|+.+|..
T Consensus 75 ~~vi~~g~~~~~~~~~r~----~l~~----~~~~v~l~~~~~~~~~R~~~~~~ 119 (175)
T PRK00131 75 NLVISTGGGAVLREENRA----LLRE----RGTVVYLDASFEELLRRLRRDRN 119 (175)
T ss_pred CCEEEeCCCEeecHHHHH----HHHh----CCEEEEEECCHHHHHHHhcCCCC
Confidence 234444321 1222222 2221 23799999999999999998753
No 75
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.28 E-value=2e-11 Score=93.47 Aligned_cols=119 Identities=24% Similarity=0.232 Sum_probs=65.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCC---ceeehHHHHHHHHHcCChHHHHHHHHHHcCC--CCCHHH-----------
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCL---CHLATGDMLRAAVAAKTPLGIKAKEAMDKGE--LVSDDL----------- 95 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~---~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~----------- 95 (195)
+++|+|.|++||||||+++.|+++++. .++-... ......++.+++.+.... ...+..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~ 76 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTRE------PGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHE 76 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999999843 2221100 012233444444432211 112111
Q ss_pred -HHHHHHHHHcCCCCCCcEEEeCCCCCH------------HHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 96 -VVGIIDEAMKKPSCQKGFILDGFPRTE------------VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 96 -~~~~l~~~l~~~~~~~~~iid~~~~~~------------~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
+...+...+. .+..+|+|.+..+. .....+...+.. ..|+++|||++|++++.+|+..|..
T Consensus 77 ~~~~~i~~~l~---~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~--~~~d~~i~l~~~~~~~~~R~~~r~~ 150 (195)
T TIGR00041 77 HLEDKIKPALA---EGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALG--DMPDLTIYLDIDPEVALERLRKRGE 150 (195)
T ss_pred HHHHHHHHHHh---CCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhC--CCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 1111222222 24457778543221 111222222211 1489999999999999999999864
No 76
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.28 E-value=1.1e-10 Score=87.60 Aligned_cols=111 Identities=18% Similarity=0.174 Sum_probs=65.5
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
+.|+|+|++||||||+++.|++.+|+++++.|.++..... ... .++.... ........-...+........
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g--~~~----~~~~~~~---g~~~~~~~e~~~~~~~~~~~~ 73 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSN--MTV----AEIVERE---GWAGFRARESAALEAVTAPST 73 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhC--CCH----HHHHHHH---CHHHHHHHHHHHHHHhcCCCe
Confidence 3588999999999999999999999999999877655432 111 1111111 111111111111111111223
Q ss_pred EEEeCC--CCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 113 FILDGF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 113 ~iid~~--~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
+|..|. .........+. ..+.+|||++|++++.+|+..|.
T Consensus 74 vi~~ggg~vl~~~~~~~l~--------~~~~~v~l~~~~~~~~~Rl~~r~ 115 (171)
T PRK03731 74 VIATGGGIILTEENRHFMR--------NNGIVIYLCAPVSVLANRLEANP 115 (171)
T ss_pred EEECCCCccCCHHHHHHHH--------hCCEEEEEECCHHHHHHHHcccc
Confidence 333332 23333333332 24579999999999999999874
No 77
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.27 E-value=2.2e-11 Score=93.61 Aligned_cols=116 Identities=12% Similarity=0.099 Sum_probs=72.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcC-----CCCCHHHH------------
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDDLV------------ 96 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------------ 96 (195)
.|+|+|++||||||+++.|++ +|+.+++.|++.++.+..+......+.+.+... +.++...+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 389999999999999998865 799999999999888776655544444433221 12211111
Q ss_pred ------HHH----HHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 97 ------VGI----IDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 97 ------~~~----l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
-.. +...+........+++| .|.-.+.. + ...+|.+|++++|.+++.+|+.+|+
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e-~pLL~E~~--~-------~~~~D~vi~V~a~~e~r~~RL~~R~ 143 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQTTAEGKLVIWE-VPLLFETD--A-------YTLCDATVTVDSDPEESILRTISRD 143 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCcEEEE-eeeeeEcC--c-------hhhCCEEEEEECCHHHHHHHHHHcC
Confidence 111 12222221112234444 44333211 1 1247999999999999999999995
No 78
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.27 E-value=5.1e-11 Score=87.90 Aligned_cols=138 Identities=15% Similarity=0.101 Sum_probs=70.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh---C--CceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 105 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~---~--~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 105 (195)
+|.+|||+|.|||||||+|+.|.+++ | ..+++. |.+|..+..+. +....+...+- ..+..+. ..+.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~~l~~dl--~fs~~dR~e~~-----rr~~~~A-~ll~ 71 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRHGLNADL--GFSKEDREENI-----RRIAEVA-KLLA 71 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCTTTTTT----SSHHHHHHHH-----HHHHHHH-HHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhhccCCCC--CCCHHHHHHHH-----HHHHHHH-HHHH
Confidence 36789999999999999999999988 2 456666 44555443221 11111100000 0111111 1121
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHH----hcCCCCCCCCceeeCCCCCCCCCCC
Q 029307 106 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI----TGRWIHPSSGRTYHTKFAPPKVPGV 181 (195)
Q Consensus 106 ~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl----~~R~~~~~~g~~~~~~~~~~~~~~~ 181 (195)
. .+..+|+...-...+.+....+.+... .+ +.||+++|.+++.+|- .+|-. .-..+...|+
T Consensus 72 ~--~G~ivIva~isp~~~~R~~~R~~~~~~--~f-~eVyv~~~~e~~~~RD~KglY~ka~----------~g~i~~~~Gv 136 (156)
T PF01583_consen 72 D--QGIIVIVAFISPYREDREWARELIPNE--RF-IEVYVDCPLEVCRKRDPKGLYAKAR----------AGEIKNFTGV 136 (156)
T ss_dssp H--TTSEEEEE----SHHHHHHHHHHHHTT--EE-EEEEEES-HHHHHHHTTTSHHHHHH----------TTSSSSHTTT
T ss_pred h--CCCeEEEeeccCchHHHHHHHHhCCcC--ce-EEEEeCCCHHHHHHhCchhHHHHhh----------CCCcCCcccc
Confidence 1 244566665544455666666665421 34 8999999999999993 22211 1134455667
Q ss_pred CCCCCCccccC
Q 029307 182 DDVSRCNWRTF 192 (195)
Q Consensus 182 ~~~~~~~~~~~ 192 (195)
++.+..|.+|+
T Consensus 137 d~~ye~P~~pd 147 (156)
T PF01583_consen 137 DDPYEEPLNPD 147 (156)
T ss_dssp SS-----SS-S
T ss_pred ccCCCCCCCCe
Confidence 77777776664
No 79
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.26 E-value=1.2e-10 Score=87.83 Aligned_cols=123 Identities=19% Similarity=0.179 Sum_probs=67.8
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCC--ceeehHHHHHHHHHcCChHHHHHHHHHHc-CCCCCHH---HHHHHHHHHHc
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCL--CHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDD---LVVGIIDEAMK 105 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~--~~i~~d~l~r~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~l~~~l~ 105 (195)
+++|+|+|+|||||||+++.|++.++. .+++.|++.......... .+.... +.. ....+.. .+...+...+.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~y~~~~~~~~ 79 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQD-AEGGIE-FDGDGGVSPGPEFRLLEGAWYEAVA 79 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcc-cccccc-cCccCCcccchHHHHHHHHHHHHHH
Confidence 468999999999999999999998864 455776554332111000 000000 000 0111111 12222222221
Q ss_pred -CCCCCCcEEEeCCCC-CHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 106 -KPSCQKGFILDGFPR-TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 106 -~~~~~~~~iid~~~~-~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
....+..+|+|.... .......+.. + .+..+ ..|++.+|.+++.+|+.+|.
T Consensus 80 ~~l~~G~~VIvD~~~~~~~~~r~~~~~-~--~~~~~-~~v~l~~~~~~l~~R~~~R~ 132 (175)
T cd00227 80 AMARAGANVIADDVFLGRAALQDCWRS-F--VGLDV-LWVGVRCPGEVAEGRETARG 132 (175)
T ss_pred HHHhCCCcEEEeeeccCCHHHHHHHHH-h--cCCCE-EEEEEECCHHHHHHHHHhcC
Confidence 122366799997644 3333333332 2 12233 79999999999999999986
No 80
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.26 E-value=1.3e-10 Score=89.39 Aligned_cols=122 Identities=17% Similarity=0.261 Sum_probs=75.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHH-HHHHHHHH----cCCCCCHHH----------
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLG-IKAKEAMD----KGELVSDDL---------- 95 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~-~~~~~~~~----~~~~~~~~~---------- 95 (195)
.+++|+|.|.|||||||+|+.|++.+|+.++..+|++|+.+......+ ......+. .+....+..
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~ 81 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA 81 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 467999999999999999999999999998888899999876332211 00001000 011111111
Q ss_pred ----HHHHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEc-CHHHHHHHHhcCCCC
Q 029307 96 ----VVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI-DDAVLEERITGRWIH 162 (195)
Q Consensus 96 ----~~~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~-~~e~~~~Rl~~R~~~ 162 (195)
+..++...+. .+..+|+|+............ .. .. .++++.+ +++++.+|+..|...
T Consensus 82 v~~~L~~va~~~l~---~G~sVIvEgv~l~p~~~~~~~----~~--~v-~~i~l~v~d~e~lr~Rl~~R~~~ 143 (197)
T PRK12339 82 IMPGINRVIRRALL---NGEDLVIESLYFHPPMIDENR----TN--NI-RAFYLYIRDAELHRSRLADRINY 143 (197)
T ss_pred HHHHHHHHHHHHHH---cCCCEEEEecCcCHHHHHHHH----hc--Ce-EEEEEEeCCHHHHHHHHHHHhhc
Confidence 1222223333 366799998877665543211 11 22 4566655 688888999999754
No 81
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.25 E-value=2.9e-10 Score=87.88 Aligned_cols=129 Identities=25% Similarity=0.269 Sum_probs=77.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcC-CCCCHHHH--------HHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-ELVSDDLV--------VGIID 101 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~l~ 101 (195)
.++.|+|.|+.||||||+++.|++.+.-..+.+ ++..+. .+++.|+.+++.+.+. ..++.... ...+.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v--~~trEP-~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~ 78 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKV--VLTREP-GGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLE 78 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE--EEEeCC-CCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999884332211 111111 2466677777777664 22322211 11111
Q ss_pred HHHc-CCCCCCcEEEeCCCCCHHHHH--------HHHHHHhhc---CCCcCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 102 EAMK-KPSCQKGFILDGFPRTEVQAQ--------KLDEMLEKQ---GKKVDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 102 ~~l~-~~~~~~~~iid~~~~~~~~~~--------~l~~~l~~~---~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
..+. .+..+..+|.|.|..+...+. .+...+... +..||+++||++|+++..+|+.+|+..
T Consensus 79 ~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~ 151 (208)
T COG0125 79 EVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGEL 151 (208)
T ss_pred HHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence 1222 123355778887653332221 111212122 348999999999999999999999753
No 82
>COG0645 Predicted kinase [General function prediction only]
Probab=99.24 E-value=9.9e-11 Score=86.50 Aligned_cols=122 Identities=17% Similarity=0.204 Sum_probs=87.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHH---HHHHHHHHHHcCCCC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD---LVVGIIDEAMKKPSC 109 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~~ 109 (195)
+++++.|.||+||||+++.|.+.++..+|.. |.+++.+..- +. .+....+.+.+.. ....+.......+..
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrs-D~irk~L~g~-p~----~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~ 75 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRS-DVIRKRLFGV-PE----ETRGPAGLYSPAATAAVYDELLGRAELLLSS 75 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEeh-HHHHHHhcCC-cc----cccCCCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999999999 5566665521 00 0011122222221 123333333334455
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 110 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 110 ~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
+..+|+|.......++..........+..+ ..|.++++.+++..|+.+|+.
T Consensus 76 G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~-~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 76 GHSVVLDATFDRPQERALARALARDVGVAF-VLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred CCcEEEecccCCHHHHHHHHHHHhccCCce-EEEEcCCcHHHHHHHHHHhCC
Confidence 788999999888888888888777766666 789999999999999999975
No 83
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.24 E-value=1.1e-10 Score=91.28 Aligned_cols=128 Identities=16% Similarity=0.136 Sum_probs=66.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHHH-HHHHHH-cCChHHH------HHHHHHHcCC---CCCHHHHH-----
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM-LRAAVA-AKTPLGI------KAKEAMDKGE---LVSDDLVV----- 97 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l-~r~~~~-~~~~~~~------~~~~~~~~~~---~~~~~~~~----- 97 (195)
+|+|.|+.||||||+++.|+++++..++..... ...... .+...+. .++.++.+.. ........
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~ 80 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS 80 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence 589999999999999999999998755533100 000000 0011111 1223332211 11111111
Q ss_pred --HHHHHHHc-CCCCCCcEEEeCCCCCH-HH-----------------HHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHH
Q 029307 98 --GIIDEAMK-KPSCQKGFILDGFPRTE-VQ-----------------AQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 156 (195)
Q Consensus 98 --~~l~~~l~-~~~~~~~~iid~~~~~~-~~-----------------~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl 156 (195)
..+...+. .+..+..+|+|.+.... .. ...+.+.+......||++|||++|++++.+|+
T Consensus 81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri 160 (219)
T cd02030 81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI 160 (219)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence 11111111 12335678999774321 11 11111111222367999999999999999999
Q ss_pred hcCCC
Q 029307 157 TGRWI 161 (195)
Q Consensus 157 ~~R~~ 161 (195)
.+|+.
T Consensus 161 ~~R~~ 165 (219)
T cd02030 161 KKRGD 165 (219)
T ss_pred HHcCC
Confidence 99864
No 84
>PRK06696 uridine kinase; Validated
Probab=99.22 E-value=5.9e-11 Score=93.01 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=37.5
Q ss_pred HHHHHHHHhccc-CCCCCcEEEEEcCCCCChhHHHHHHHHHh---CCc--eeehHHHH
Q 029307 16 DLMTELLRRMKC-ASKPDKRLILVGPPGSGKGTQSPIIKDEY---CLC--HLATGDML 67 (195)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~iI~i~G~pGsGKSTla~~L~~~~---~~~--~i~~d~l~ 67 (195)
+++.+++.+... ....+.+|+|.|++||||||+|+.|++.+ |.. +++.|+++
T Consensus 5 ~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 5 QLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 444444444432 24567899999999999999999999998 444 44577664
No 85
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.21 E-value=8.5e-11 Score=99.40 Aligned_cols=116 Identities=15% Similarity=0.127 Sum_probs=74.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcC-----CCCCHHHH------------
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDDLV------------ 96 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------------ 96 (195)
+|+|+|++||||||+++.|++ +|+.+|+.|.+.++.+..+......+.+.+... +.++...+
T Consensus 3 ~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~~ 81 (395)
T PRK03333 3 RIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEARA 81 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHHH
Confidence 699999999999999999987 899999999999888776554333333333221 12221111
Q ss_pred ----------HHHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 97 ----------VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 97 ----------~~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
...+...+... .+..+++.+.|.-.+.. +. ..+|.+|+|++|.+++.+|+.+|+
T Consensus 82 ~le~i~hP~I~~~i~~~i~~~-~~~~vvv~eipLL~E~~--~~-------~~~D~iI~V~ap~e~ri~Rl~~rR 145 (395)
T PRK03333 82 VLNGIVHPLVGARRAELIAAA-PEDAVVVEDIPLLVESG--MA-------PLFHLVVVVDADVEVRVRRLVEQR 145 (395)
T ss_pred HHHHhhhHHHHHHHHHHHHhc-CCCCEEEEEeeeeecCC--ch-------hhCCEEEEEECCHHHHHHHHHhcC
Confidence 11122222222 23345555554333211 11 257899999999999999999864
No 86
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.21 E-value=4.7e-10 Score=84.54 Aligned_cols=113 Identities=18% Similarity=0.246 Sum_probs=65.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQK 111 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 111 (195)
++.|+|.|++||||||+++.|++.+++.+++.|..+..... ...+..+.. .+...-...-.+.+.. +.. ..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g--~~i~~~~~~---~g~~~fr~~e~~~l~~-l~~---~~ 74 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADIGWVFDV---EGEEGFRDREEKVINE-LTE---KQ 74 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhC--cCHhHHHHH---hCHHHHHHHHHHHHHH-HHh---CC
Confidence 45799999999999999999999999999999876554432 111111110 0100000001122222 221 22
Q ss_pred cEEEe-CC--CCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 112 GFILD-GF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 112 ~~iid-~~--~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
.+|+. |. ..+......|. ..+.+|||++|.+++.+|+..+..
T Consensus 75 ~~vi~~ggg~v~~~~~~~~l~--------~~~~vv~L~~~~e~~~~Ri~~~~~ 119 (172)
T PRK05057 75 GIVLATGGGSVKSRETRNRLS--------ARGVVVYLETTIEKQLARTQRDKK 119 (172)
T ss_pred CEEEEcCCchhCCHHHHHHHH--------hCCEEEEEeCCHHHHHHHHhCCCC
Confidence 34444 22 22333333332 234799999999999999986543
No 87
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.21 E-value=5.6e-11 Score=92.76 Aligned_cols=38 Identities=29% Similarity=0.495 Sum_probs=35.4
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~ 70 (195)
++|.|.|++||||||+++.|++++++.+++.+++++..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 68999999999999999999999999999998887665
No 88
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.20 E-value=1.4e-09 Score=82.97 Aligned_cols=123 Identities=21% Similarity=0.246 Sum_probs=68.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh---CCceeehHHHHHHHHHcCChHHHHHHHHHHcCC--CCCHH-HH-------HHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE--LVSDD-LV-------VGI 99 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~---~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~-------~~~ 99 (195)
|+|+|.|++||||||+++.|++++ |..++..... .....++.+++++.... ..... .. ...
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 74 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP------GGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH 74 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC------CCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence 579999999999999999999998 5544433110 01112334444433221 01111 00 111
Q ss_pred HHHHHcC-CCCCCcEEEeCCCCCH------------HHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 100 IDEAMKK-PSCQKGFILDGFPRTE------------VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 100 l~~~l~~-~~~~~~~iid~~~~~~------------~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
+...+.. ...+..+|+|.+.... .+...+.... .....|+.+|||++|++++.+|+.+|...
T Consensus 75 ~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~i~l~~~~~~~~~R~~~R~~~ 149 (200)
T cd01672 75 VEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLA-TGGLKPDLTILLDIDPEVGLARIEARGRD 149 (200)
T ss_pred HHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHH-hCCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence 1111111 1235567888554222 1222222222 12346899999999999999999999753
No 89
>PRK07667 uridine kinase; Provisional
Probab=99.20 E-value=5.5e-11 Score=91.23 Aligned_cols=121 Identities=10% Similarity=-0.019 Sum_probs=67.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhC-----CceeehHHHHHHHHHc----CChH-------------HHHHHHHHHc
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAA----KTPL-------------GIKAKEAMDK 87 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~-----~~~i~~d~l~r~~~~~----~~~~-------------~~~~~~~~~~ 87 (195)
..+.+|+|.|++||||||+|+.|++.++ ..+++.|+++...... .... ...+-..+..
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~ 94 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQN 94 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcC
Confidence 4457999999999999999999999873 4588888876543321 1100 0000001111
Q ss_pred CCCCCHHHHHHHHHHHHc---CCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 88 GELVSDDLVVGIIDEAMK---KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~---~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
+..+.--.+......... .......+|+||..... ..+. ..+|.+|++++|.+++.+|+.+|.
T Consensus 95 ~~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~---~~~~-------~~~d~~v~V~~~~~~~~~R~~~r~ 160 (193)
T PRK07667 95 ETKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQR---KEWR-------DFFHYMVYLDCPRETRFLRESEET 160 (193)
T ss_pred CCeEEEeeeccccccccccceecCCCCEEEEEehhhhh---hhHH-------hhceEEEEEECCHHHHHHHHhccc
Confidence 100000000000000000 11123467778764211 1122 247899999999999999999985
No 90
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=3.9e-11 Score=86.58 Aligned_cols=126 Identities=18% Similarity=0.203 Sum_probs=83.6
Q ss_pred EcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHH---HHHHHHHHcC-CCCCCcE
Q 029307 38 VGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV---VGIIDEAMKK-PSCQKGF 113 (195)
Q Consensus 38 ~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~l~~-~~~~~~~ 113 (195)
.|.+||||||+++.|++++++.+|+-|++--...- +.|..+..++++.. ...+..++.+ ...+...
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi----------~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~ 70 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANI----------EKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHV 70 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHH----------HHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCce
Confidence 38999999999999999999999999887432211 45667777776654 3333344433 2223334
Q ss_pred EEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCCceeeCCCCCCCC
Q 029307 114 ILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKV 178 (195)
Q Consensus 114 iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~~~~ 178 (195)
|+-+-.....++.. +....+.. .+|||+.+.+++.+|+.+|..|..........|+...+
T Consensus 71 vi~CSALKr~YRD~----LR~~~~~~-~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ll~SQfa~LE~ 130 (161)
T COG3265 71 VIACSALKRSYRDL----LREANPGL-RFVYLDGDFDLILERMKARKGHFMPASLLDSQFATLEE 130 (161)
T ss_pred EEecHHHHHHHHHH----HhccCCCe-EEEEecCCHHHHHHHHHhcccCCCCHHHHHHHHHHhcC
Confidence 55444344444444 43333444 79999999999999999999887766666655544333
No 91
>PLN02199 shikimate kinase
Probab=99.20 E-value=2.1e-10 Score=92.42 Aligned_cols=109 Identities=16% Similarity=0.195 Sum_probs=66.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCCC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKPSCQ 110 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~ 110 (195)
...|+|+|++||||||+++.|++.+|+.+|+.|.++.+... + ..+.+++.. +...-.+.-.+.+..... .
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-G----~sI~eIf~~~GE~~FR~~E~e~L~~L~~----~ 172 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-G----TSVAEIFVHHGENFFRGKETDALKKLSS----R 172 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-C----CCHHHHHHHhCHHHHHHHHHHHHHHHHh----c
Confidence 56899999999999999999999999999999988887643 2 222233322 211111111222222211 2
Q ss_pred CcEEEe-CC--CCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhc
Q 029307 111 KGFILD-GF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG 158 (195)
Q Consensus 111 ~~~iid-~~--~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~ 158 (195)
...||. |. ......... +. . -.+|||++|.+++.+|+..
T Consensus 173 ~~~VIStGGG~V~~~~n~~~----L~----~-G~vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 173 YQVVVSTGGGAVIRPINWKY----MH----K-GISIWLDVPLEALAHRIAA 214 (303)
T ss_pred CCEEEECCCcccCCHHHHHH----Hh----C-CeEEEEECCHHHHHHHHhh
Confidence 233443 33 222222222 21 1 2699999999999999985
No 92
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.19 E-value=3e-10 Score=99.74 Aligned_cols=118 Identities=14% Similarity=0.208 Sum_probs=73.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKPS 108 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~ 108 (195)
.+-+.|+|+|+|||||||+++.|++.+|+++++.|+++.+... +.+.+++.. +.....+.-.+.+...+..
T Consensus 4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g------~si~eif~~~Ge~~FR~~E~~~l~~~~~~-- 75 (542)
T PRK14021 4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIG------MSIPSYFEEYGEPAFREVEADVVADMLED-- 75 (542)
T ss_pred CCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHC------cCHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 4456899999999999999999999999999999988776642 333343322 2111111112223322221
Q ss_pred CCCcEEEeC--CCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 109 CQKGFILDG--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 109 ~~~~~iid~--~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
...+|..| .+........|.+++... -.+|||+++++++.+|+..+.
T Consensus 76 -~~~VIs~GGG~v~~~~n~~~L~~~~~~~----g~vv~L~~~~~~l~~Rl~~~~ 124 (542)
T PRK14021 76 -FDGIFSLGGGAPMTPSTQHALASYIAHG----GRVVYLDADPKEAMERANRGG 124 (542)
T ss_pred -CCeEEECCCchhCCHHHHHHHHHHHhcC----CEEEEEECCHHHHHHHHhCCC
Confidence 12233332 234444555554444332 269999999999999997543
No 93
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=99.19 E-value=1.1e-11 Score=95.49 Aligned_cols=122 Identities=22% Similarity=0.320 Sum_probs=73.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh---CCceeehHHHHHHHHHcCChHHHHHHHHHHcCCC--C----CHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL--V----SDDLVVGII 100 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~---~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~l 100 (195)
..|.+|++.|+|||||||++..+...+ ++.+|+.|++ +.... ....+... ..... . ...+...++
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~-r~~~p----~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~ 86 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF-RQFHP----DYDELLKA-DPDEASELTQKEASRLAEKLI 86 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG-GGGST----THHHHHHH-HCCCTHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH-HHhcc----chhhhhhh-hhhhhHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999987 6889999664 32221 11111110 00000 0 011223444
Q ss_pred HHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 101 DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 101 ~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
...+.. +..+|+|+..........+.+.+...|..+ .++++.+++++...|+.+|..
T Consensus 87 ~~a~~~---~~nii~E~tl~~~~~~~~~~~~~k~~GY~v-~l~~v~~~~e~s~~rv~~R~~ 143 (199)
T PF06414_consen 87 EYAIEN---RYNIIFEGTLSNPSKLRKLIREAKAAGYKV-ELYYVAVPPELSIERVRQRYE 143 (199)
T ss_dssp HHHHHC---T--EEEE--TTSSHHHHHHHHHHHCTT-EE-EEEEE---HHHHHHHHHHHHH
T ss_pred HHHHHc---CCCEEEecCCCChhHHHHHHHHHHcCCceE-EEEEEECCHHHHHHHHHHHHH
Confidence 444444 457999998887777776777788777777 788899999999999999854
No 94
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.18 E-value=7e-10 Score=82.52 Aligned_cols=113 Identities=16% Similarity=0.238 Sum_probs=65.9
Q ss_pred CCCCCcEEEEEcCCCCChhHHHHHHHHHh---CCc--eeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 029307 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY---CLC--HLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDE 102 (195)
Q Consensus 28 ~~~~~~iI~i~G~pGsGKSTla~~L~~~~---~~~--~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (195)
.+.++.+||++|.+||||||+|.+|.+++ |+. +++- |-+|..+..+. |....+...+. .....+.+
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDG-DnvR~gL~~dL--gFs~edR~eni------RRvaevAk 89 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDG-DNVRHGLNRDL--GFSREDRIENI------RRVAEVAK 89 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecC-hhHhhcccCCC--CCChHHHHHHH------HHHHHHHH
Confidence 35667899999999999999999999988 332 3333 55666554332 21111111111 00111112
Q ss_pred HHcCCCCCCcEEEeCCCCCHHHHHHH-HHHHhhcCCCcCEEEEEEcCHHHHHHH
Q 029307 103 AMKKPSCQKGFILDGFPRTEVQAQKL-DEMLEKQGKKVDKVLNFAIDDAVLEER 155 (195)
Q Consensus 103 ~l~~~~~~~~~iid~~~~~~~~~~~l-~~~l~~~~~~~d~vi~l~~~~e~~~~R 155 (195)
.+.. ...++|-.+.+.....+.. .+.+. .+ .+ +-||+++|.++|.+|
T Consensus 90 ll~d---aG~iviva~ISP~r~~R~~aR~~~~-~~-~F-iEVyV~~pl~vce~R 137 (197)
T COG0529 90 LLAD---AGLIVIVAFISPYREDRQMARELLG-EG-EF-IEVYVDTPLEVCERR 137 (197)
T ss_pred HHHH---CCeEEEEEeeCccHHHHHHHHHHhC-cC-ce-EEEEeCCCHHHHHhc
Confidence 2221 3456666676666544433 33332 11 34 799999999999998
No 95
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.18 E-value=4.9e-10 Score=91.96 Aligned_cols=119 Identities=12% Similarity=0.148 Sum_probs=68.6
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCC
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKP 107 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~ 107 (195)
..++.+|+|+|++||||||+++.|++++|+++++.|..+.+... .. +.+.+.. +...-...-...+...+..
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G--~~----i~ei~~~~G~~~fr~~e~~~l~~ll~~- 202 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAG--LS----VSEIFALYGQEGYRRLERRALERLIAE- 202 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhC--CC----HHHHHHHHCHHHHHHHHHHHHHHHHhh-
Confidence 44567999999999999999999999999999999876655432 11 1121111 1000011112223333322
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 108 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 108 ~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
...+|+............+...+. .. ++|||++|.+++.+|+.+|..
T Consensus 203 --~~~~VI~~Ggg~v~~~~~~~~l~~----~~-~~V~L~a~~e~~~~Rl~~r~~ 249 (309)
T PRK08154 203 --HEEMVLATGGGIVSEPATFDLLLS----HC-YTVWLKASPEEHMARVRAQGD 249 (309)
T ss_pred --CCCEEEECCCchhCCHHHHHHHHh----CC-EEEEEECCHHHHHHHHhcCCC
Confidence 122444432221111111212221 23 799999999999999998854
No 96
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.17 E-value=5.4e-10 Score=85.12 Aligned_cols=116 Identities=21% Similarity=0.160 Sum_probs=65.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh---CCceeehHH-HHHHHHHcCChHHH---HHHHHHHcCCCCCHHHHHHHHHHHHc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY---CLCHLATGD-MLRAAVAAKTPLGI---KAKEAMDKGELVSDDLVVGIIDEAMK 105 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~---~~~~i~~d~-l~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~ 105 (195)
++|+++|+|||||||+|+.|++.+ ++..++... ..+-... +..++. ..++.. .+.....+..+++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~-DEslpi~ke~yres~-------~ks~~rlldSalk 73 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILW-DESLPILKEVYRESF-------LKSVERLLDSALK 73 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheec-ccccchHHHHHHHHH-------HHHHHHHHHHHhc
Confidence 479999999999999999999988 333333322 2211111 111111 111111 1112334444444
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 106 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 106 ~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
+..+|+|..+--..-+.+|.-....... .-.+||+.+|.++|.+|-.+|..
T Consensus 74 ----n~~VIvDdtNYyksmRrqL~ceak~~~t-t~ciIyl~~plDtc~rrN~erge 124 (261)
T COG4088 74 ----NYLVIVDDTNYYKSMRRQLACEAKERKT-TWCIIYLRTPLDTCLRRNRERGE 124 (261)
T ss_pred ----ceEEEEecccHHHHHHHHHHHHHHhcCC-ceEEEEEccCHHHHHHhhccCCC
Confidence 4467777654333334444333333333 33899999999999999988854
No 97
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.16 E-value=1.2e-10 Score=88.00 Aligned_cols=117 Identities=22% Similarity=0.186 Sum_probs=81.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHH-------------------
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD------------------- 94 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 94 (195)
+|.++|..||||||+++.+. .+|+++|++|.+.|+...++++..+.+...+.....+++.
T Consensus 3 iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r~ 81 (225)
T KOG3220|consen 3 IVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKRQ 81 (225)
T ss_pred EEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHHH
Confidence 78999999999999999997 6999999999999999998888877777766654332221
Q ss_pred ---------HHHHHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 95 ---------LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 95 ---------~~~~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
+..+++++.....-.+..+++=..|.-.+. .+.+ -+..+|.+.||.++..+|+++|+
T Consensus 82 ~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~--~~~~-------~~~~tvvV~cd~~~Ql~Rl~~Rd 147 (225)
T KOG3220|consen 82 ALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEA--KLLK-------ICHKTVVVTCDEELQLERLVERD 147 (225)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHH--hHHh-------heeeEEEEEECcHHHHHHHHHhc
Confidence 112222222222223443433335544433 1222 25578999999999999999997
No 98
>PRK07933 thymidylate kinase; Validated
Probab=99.16 E-value=1.7e-10 Score=89.86 Aligned_cols=122 Identities=16% Similarity=0.077 Sum_probs=66.0
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCC---ceeehHHHHHHHHHcCChHHHHHHHHHHcC--CC-CCHH---H--------
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCL---CHLATGDMLRAAVAAKTPLGIKAKEAMDKG--EL-VSDD---L-------- 95 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~---~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~--~~-~~~~---~-------- 95 (195)
|+|+|.|+.||||||+++.|++++.. .++-. ++....++..++.+++.+... .. .... .
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~----~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~ 76 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATL----AFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAG 76 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE----ecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhh
Confidence 57999999999999999999999842 22211 000000122233333333211 00 0000 0
Q ss_pred HHHHHHHHHcCCCCCCcEEEeCCCCCHHH-------------HHHHHHHHhh---cCCCcCEEEEEEcCHHHHHHHHhcC
Q 029307 96 VVGIIDEAMKKPSCQKGFILDGFPRTEVQ-------------AQKLDEMLEK---QGKKVDKVLNFAIDDAVLEERITGR 159 (195)
Q Consensus 96 ~~~~l~~~l~~~~~~~~~iid~~~~~~~~-------------~~~l~~~l~~---~~~~~d~vi~l~~~~e~~~~Rl~~R 159 (195)
....+...+. .+..+|.|.|..+... ...+...+.. ....||++|||++|+++..+|+.+|
T Consensus 77 ~~~~I~p~l~---~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R 153 (213)
T PRK07933 77 ARDELAGLLA---AHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRR 153 (213)
T ss_pred hHHHHHHHHh---CCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhh
Confidence 0111222332 3556888876533311 0111122221 2247999999999999999999998
Q ss_pred CC
Q 029307 160 WI 161 (195)
Q Consensus 160 ~~ 161 (195)
..
T Consensus 154 ~~ 155 (213)
T PRK07933 154 AA 155 (213)
T ss_pred cc
Confidence 53
No 99
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.14 E-value=1.1e-10 Score=90.07 Aligned_cols=122 Identities=17% Similarity=0.176 Sum_probs=72.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCc---eeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLC---HLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK- 106 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~---~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~- 106 (195)
++.+|.|.|++||||||+|+.|++.++.. .|+.|+++...-.. .. ..........+...-+.++...+..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~--~~----~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHL--PF----EERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhc--CH----hhcCCcCccChhhhcHHHHHHHHHHH
Confidence 44789999999999999999999999854 77777765422110 00 0000001111222222222222211
Q ss_pred ------------------------CCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 107 ------------------------PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 107 ------------------------~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
......+|++|+..-.+ +.+.+ ..|+.||++++.+++..|...|...
T Consensus 81 ~~g~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~-------~~d~kIfvdtd~D~RliRri~RD~~ 151 (218)
T COG0572 81 KQGKPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRD-------LMDLKIFVDTDADVRLIRRIKRDVQ 151 (218)
T ss_pred HcCCcccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHh-------hcCEEEEEeCCccHHHHHHHHHHHH
Confidence 12345788888743332 22333 4789999999999999998888763
Q ss_pred CCCCce
Q 029307 163 PSSGRT 168 (195)
Q Consensus 163 ~~~g~~ 168 (195)
..|++
T Consensus 152 -~rg~~ 156 (218)
T COG0572 152 -ERGRD 156 (218)
T ss_pred -HhCCC
Confidence 34553
No 100
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.12 E-value=1.5e-09 Score=81.91 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=62.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhC-----CceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM 104 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~-----~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 104 (195)
.+|.+|+|+|++||||||+++.|+++++ ..+++.+ .+++.+... ..... .. ... ......+...+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d-~~r~~~~~~-~~~~~-~~-~~~------~~~~~~l~~~l 74 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGD-ELREILGHY-GYDKQ-SR-IEM------ALKRAKLAKFL 74 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecH-HHHhhcCCC-CCCHH-HH-HHH------HHHHHHHHHHH
Confidence 4577999999999999999999999885 5566653 345443211 00000 00 000 00111122222
Q ss_pred cCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhc
Q 029307 105 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG 158 (195)
Q Consensus 105 ~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~ 158 (195)
. ..+..+|+|+..............+ .+..+|||++|++++.+|+..
T Consensus 75 ~--~~g~~VI~~~~~~~~~~~~~~~~~~-----~~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 75 A--DQGMIVIVTTISMFDEIYAYNRKHL-----PNYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred H--hCCCEEEEEeCCcHHHHHHHHHhhc-----CCeEEEEEeCCHHHHHHhchh
Confidence 2 2245678886542211111112221 234799999999999999764
No 101
>COG4639 Predicted kinase [General function prediction only]
Probab=99.12 E-value=1.4e-09 Score=79.22 Aligned_cols=113 Identities=21% Similarity=0.180 Sum_probs=77.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CCCCC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK-PSCQK 111 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~ 111 (195)
.++++.|.|||||||+++.... +...++++++ +...... ..+ ...--.+..+++.+...+.+ ...+.
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n~~--~~~~lsld~~-r~~lg~~------~~~---e~sqk~~~~~~~~l~~~l~qrl~~Gk 70 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKENFL--QNYVLSLDDL-RLLLGVS------ASK---ENSQKNDELVWDILYKQLEQRLRRGK 70 (168)
T ss_pred eEEEEecCCCCchhHHHHHhCC--CcceecHHHH-HHHhhhc------hhh---hhccccHHHHHHHHHHHHHHHHHcCC
Confidence 4799999999999999886433 6778888664 3332110 000 01111233344444444333 22366
Q ss_pred cEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhc
Q 029307 112 GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG 158 (195)
Q Consensus 112 ~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~ 158 (195)
-.|+|.+....+.++.+......++..+ .+|+++.|.+.|.+|...
T Consensus 71 ~tiidAtn~rr~~r~~l~~La~~y~~~~-~~ivfdtp~~~c~aRNk~ 116 (168)
T COG4639 71 FTIIDATNLRREDRRKLIDLAKAYGYKI-YAIVFDTPLELCLARNKL 116 (168)
T ss_pred eEEEEcccCCHHHHHHHHHHHHHhCCeE-EEEEEeCCHHHHHHHhhc
Confidence 7899999999999999999888888877 789999999999999653
No 102
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.12 E-value=3.1e-10 Score=87.97 Aligned_cols=122 Identities=17% Similarity=0.175 Sum_probs=68.0
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh---CCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 105 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~---~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 105 (195)
+.++.+|+|+|++||||||+++.|++.+ .+.+++.|+++...-. ..........+......+.+.+.+.+.....
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 80 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSH--LSFEERVKTNYDHPDAFDHDLLIEHLKALKA 80 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCccc--CCHHHhcccCccCcccccHHHHHHHHHHHHc
Confidence 3567899999999999999999999998 3556777665432100 0000000000000011122222222222111
Q ss_pred C---------------------CCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 106 K---------------------PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 106 ~---------------------~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
. ......+|++|...-.. ..+. ..+|.+|||++|.+++.+|...|..
T Consensus 81 ~~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~--~~~~-------~~~d~~I~v~~~~~~~~~R~~~Rd~ 148 (209)
T PRK05480 81 GKAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLED--ERLR-------DLMDIKIFVDTPLDIRLIRRLKRDV 148 (209)
T ss_pred CCccccCcccccccccCCCeEEeCCCCEEEEEeehhcCc--hhHh-------hhhceeEEEeCChhHHHHHHHhhcc
Confidence 0 11123577787643211 1111 2478999999999999999999974
No 103
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.12 E-value=2.1e-10 Score=87.45 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=31.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh-CCceeehHHHHH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDMLR 68 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~-~~~~i~~d~l~r 68 (195)
+|+|.|+|||||||+|+.|++.+ ++.+|+.|++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~ 36 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFK 36 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccC
Confidence 58999999999999999999998 688999987754
No 104
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.10 E-value=4.6e-10 Score=100.74 Aligned_cols=40 Identities=25% Similarity=0.392 Sum_probs=37.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~ 70 (195)
+.++|.|.||+||||||+++.|++++|+.+++.+.++|..
T Consensus 441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 3568999999999999999999999999999999998876
No 105
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.10 E-value=1.3e-09 Score=80.29 Aligned_cols=108 Identities=14% Similarity=0.123 Sum_probs=64.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh---C--CceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHH---HHHHHHHHc
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV---VGIIDEAMK 105 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~---~--~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~l~ 105 (195)
+|+|+|.|||||||+++.|+..+ + ..+++. +.+++.+......... -..+.+ .......+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~-d~~r~~l~~~~~~~~~----------~~~~~~~~~~~~a~~l~~ 69 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG-DNVRHGLNKDLGFSRE----------DREENIRRIAEVAKLLAD 69 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC-HHHHHhhhhccCCCcc----------hHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999988 5 345555 4445433211100000 000111 111111112
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhc
Q 029307 106 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG 158 (195)
Q Consensus 106 ~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~ 158 (195)
.+..+|+|........+..+.+.+. +..+ .++|+++|.+++.+|..+
T Consensus 70 ---~G~~VIid~~~~~~~~R~~~~~l~~--~~~~-~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 70 ---AGLIVIAAFISPYREDREAARKIIG--GGDF-LEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred ---CCCEEEEccCCCCHHHHHHHHHhcC--CCCE-EEEEEeCCHHHHHHhCch
Confidence 2556888877666666666665543 2333 799999999999999544
No 106
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.09 E-value=2.2e-09 Score=94.63 Aligned_cols=126 Identities=19% Similarity=0.136 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCC------ceeehHHHHHHHHHcCChHHHHHHHHHHcC
Q 029307 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL------CHLATGDMLRAAVAAKTPLGIKAKEAMDKG 88 (195)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~------~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~ 88 (195)
-++...+.+-|.-..+.+.+|+|+|.|||||||+++.|++.++. .+++. |.+++.+....
T Consensus 375 peV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~-D~vr~~l~ge~------------- 440 (568)
T PRK05537 375 PEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDG-DVVRKHLSSEL------------- 440 (568)
T ss_pred HHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCC-cHHHHhccCCC-------------
Confidence 34455555555544566779999999999999999999999985 77777 44555443211
Q ss_pred CCCCHHH---HHH-HHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHh
Q 029307 89 ELVSDDL---VVG-IIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 157 (195)
Q Consensus 89 ~~~~~~~---~~~-~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~ 157 (195)
.+.+.. ... +....-.....+.++|++........+..+.+.+...+ .+ .+|||++|.+++.+|+.
T Consensus 441 -~f~~~er~~~~~~l~~~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g-~f-ivV~L~~p~e~l~~R~r 510 (568)
T PRK05537 441 -GFSKEDRDLNILRIGFVASEITKNGGIAICAPIAPYRATRREVREMIEAYG-GF-IEVHVATPLEVCEQRDR 510 (568)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcC-CE-EEEEEcCCHHHHHHhcc
Confidence 111111 111 11111112233567778865444445556666665443 22 58999999999999974
No 107
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.08 E-value=9.4e-10 Score=83.21 Aligned_cols=121 Identities=21% Similarity=0.221 Sum_probs=70.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCH-------HHHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD-------DLVVGIIDEAM 104 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~l 104 (195)
+.+++|.|++||||||+++.|+..++..+++.+++.... ..+. +..+....+ ..+.......+
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~---------~~r~-~~~g~~~~~~~~~~~~~~~~~~~~~~~ 72 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAK---------NIDK-MSQGIPLTDEDRLPWLERLNDASYSLY 72 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHh---------HHHH-HhcCCCCCcccchHHHHHHHHHHHHHH
Confidence 358999999999999999999999998888886642211 0000 111111111 11122222221
Q ss_pred cCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCCceee
Q 029307 105 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYH 170 (195)
Q Consensus 105 ~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~~~ 170 (195)
.. ...++|+..+ .....+..+ ...+..+ .+|||++|.+++.+|+.+|..+..+-..+.
T Consensus 73 ~~--~~~g~iv~s~-~~~~~R~~~----r~~~~~~-~~v~l~a~~~~l~~Rl~~R~~~~~~~~vl~ 130 (176)
T PRK09825 73 KK--NETGFIVCSS-LKKQYRDIL----RKSSPNV-HFLWLDGDYETILARMQRRAGHFMPPDLLQ 130 (176)
T ss_pred hc--CCCEEEEEEe-cCHHHHHHH----HhhCCCE-EEEEEeCCHHHHHHHHhcccCCCCCHHHHH
Confidence 11 1346666443 333343333 3333334 899999999999999999976544333333
No 108
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.07 E-value=2.8e-10 Score=88.13 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=67.2
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhC---CceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 105 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~---~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 105 (195)
++++.+|+|.|++||||||+++.|+..++ +.+++.|+.+...-. ..........++....++...+.+.+.....
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 80 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSH--LEMAERKKTNFDHPDAFDNDLLYEHLKNLKN 80 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhh--CCHHHhcCCCCCCccHhHHHHHHHHHHHHHC
Confidence 56778999999999999999999998875 556777654321100 0000000000000000111112222221111
Q ss_pred C---------------------CCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 106 K---------------------PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 106 ~---------------------~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
. ......+|+||.+..... .+. ..+|.+|||++|.+++..|...|..
T Consensus 81 g~~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~~--~~~-------~~~d~~I~v~~~~~~~l~R~~~R~~ 148 (207)
T TIGR00235 81 GSPIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFDE--RLR-------DLMDLKIFVDTPLDIRLIRRIERDI 148 (207)
T ss_pred CCCEecccceeecCCCCCceEEeCCCCEEEEEehhhhchH--hHH-------HhCCEEEEEECChhHHHHHHHHHHH
Confidence 0 112346788877543221 122 2478999999999999999988853
No 109
>PRK13976 thymidylate kinase; Provisional
Probab=99.07 E-value=1.9e-09 Score=83.75 Aligned_cols=120 Identities=18% Similarity=0.123 Sum_probs=67.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCc--eeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHH------------HH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLC--HLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV------------VG 98 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~--~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 98 (195)
+.|+|.|+.||||||+++.|++.+.-. .... .+. .+ ..++..++.+++.+........... ..
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v-~~~-~e-P~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~ 77 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNV-VLT-RE-PGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVK 77 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcce-EEe-eC-CCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999987421 0010 000 00 0134456666665543111221111 11
Q ss_pred HHHHHHcCCCCCCcEEEeCCCCCHH------------HHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 99 IIDEAMKKPSCQKGFILDGFPRTEV------------QAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 99 ~l~~~l~~~~~~~~~iid~~~~~~~------------~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
.+...+ ..+..+|.|.|..+.. ....+.+.. ....||++|||++|++++.+|+..|+
T Consensus 78 ~I~p~l---~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~--~~~~PDl~i~Ldv~~e~a~~Ri~~~~ 146 (209)
T PRK13976 78 VILPAL---LQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLV--VDKYPDITFVLDIDIELSLSRADKNG 146 (209)
T ss_pred HHHHHH---HCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHh--hCCCCCEEEEEeCCHHHHHHHhcccc
Confidence 122222 2355678886643221 222222222 23579999999999999999996543
No 110
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.06 E-value=2.2e-09 Score=92.98 Aligned_cols=41 Identities=34% Similarity=0.505 Sum_probs=38.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~ 70 (195)
.++++|+|.|++||||||+++.|++++|+.+++.|.++|..
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 46789999999999999999999999999999999988875
No 111
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=99.04 E-value=1.2e-10 Score=82.68 Aligned_cols=110 Identities=16% Similarity=0.223 Sum_probs=55.9
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHH-cCChHHHHHHHHHHcCCCCCHHHHHHHHH---HHHcCCCCC
Q 029307 35 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA-AKTPLGIKAKEAMDKGELVSDDLVVGIID---EAMKKPSCQ 110 (195)
Q Consensus 35 I~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~l~~~~~~ 110 (195)
|+|.|+|||||||+++.|+++++.. +..... .+......-.................++. .........
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDI-------IRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKG 73 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHH-------HHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcH-------HHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccC
Confidence 7899999999999999999987222 111111 11000000000001122233333222222 222111224
Q ss_pred CcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEE-EEEEcCHHHHHHHHhcCCCC
Q 029307 111 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKV-LNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 111 ~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~v-i~l~~~~e~~~~Rl~~R~~~ 162 (195)
..+|+|+........ ...... |+|+||++++.+|+.+|...
T Consensus 74 ~~~iid~~~~~~~~~-----------~~~~~~~i~L~~~~e~~~~R~~~R~~~ 115 (129)
T PF13238_consen 74 RNIIIDGILSNLELE-----------RLFDIKFIFLDCSPEELRKRLKKRGRK 115 (129)
T ss_dssp SCEEEEESSEEECET-----------TEEEESSEEEE--HHHHHHHHHCTTTS
T ss_pred CcEEEecccchhccc-----------ccceeeEEEEECCHHHHHHHHHhCCCC
Confidence 568888764322100 012223 99999999999999999753
No 112
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.01 E-value=5e-09 Score=86.60 Aligned_cols=127 Identities=15% Similarity=0.106 Sum_probs=78.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC------CceeehHHHHHHHHHcC------ChHHHHHHHHHH-----------cCCC
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYC------LCHLATGDMLRAAVAAK------TPLGIKAKEAMD-----------KGEL 90 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~------~~~i~~d~l~r~~~~~~------~~~~~~~~~~~~-----------~~~~ 90 (195)
+++|+|+|||||||+++.|++.+. +.+++.|+++.+..... ....+.+++.+. .|..
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~ 80 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSE 80 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 468999999999999999998775 34889988874222111 111222222111 1111
Q ss_pred CCH------HHH---HHHHH----------------HHHcC--CCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEE
Q 029307 91 VSD------DLV---VGIID----------------EAMKK--PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVL 143 (195)
Q Consensus 91 ~~~------~~~---~~~l~----------------~~l~~--~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi 143 (195)
... ... ...+. .++.. ......+|+|..+.....+..+.......+..+ .+|
T Consensus 81 ~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~-~~V 159 (340)
T TIGR03575 81 LSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGF-CQL 159 (340)
T ss_pred ccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCE-EEE
Confidence 111 111 01110 11110 011225899988888888878887777776666 899
Q ss_pred EEEcCHHHHHHHHhcCCC
Q 029307 144 NFAIDDAVLEERITGRWI 161 (195)
Q Consensus 144 ~l~~~~e~~~~Rl~~R~~ 161 (195)
|+++|.+++.+|..+|..
T Consensus 160 ~ld~ple~~l~RN~~R~~ 177 (340)
T TIGR03575 160 FLDCPVESCLLRNKQRPV 177 (340)
T ss_pred EEeCCHHHHHHHHhcCCC
Confidence 999999999999999963
No 113
>PTZ00301 uridine kinase; Provisional
Probab=99.00 E-value=8.3e-10 Score=85.71 Aligned_cols=117 Identities=16% Similarity=0.153 Sum_probs=63.9
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhC-------CceeehHHHHHHHHHcCChHHHHHHHHHHcC--CCCCHHHHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYC-------LCHLATGDMLRAAVAAKTPLGIKAKEAMDKG--ELVSDDLVVGIIDEA 103 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~-------~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~ 103 (195)
++|.|.|+|||||||+|+.|.+.++ +..++.|++.+..-. .+... ......+ ..++-+.+.+.+...
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~--~~~~~--~~~~~~d~p~a~D~~~l~~~l~~L 79 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSN--IPESE--RAYTNYDHPKSLEHDLLTTHLREL 79 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCccc--CCHHH--hcCCCCCChhhhCHHHHHHHHHHH
Confidence 6899999999999999999987762 235666665432100 00000 0000000 011111122222111
Q ss_pred HcC---------------------CCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 104 MKK---------------------PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 104 l~~---------------------~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
... ......+|++|... . +...+.. ..|+.||++++.++++.|...|...
T Consensus 80 ~~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~-l-~~~~l~~-------l~D~~ifvd~~~d~~~~Rr~~Rd~~ 150 (210)
T PTZ00301 80 KSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILL-F-TNAELRN-------EMDCLIFVDTPLDICLIRRAKRDMR 150 (210)
T ss_pred HcCCcccCCCcccccCCcCCceEEeCCCcEEEEechhh-h-CCHHHHH-------hCCEEEEEeCChhHHHHHHHhhhHH
Confidence 110 11234567787643 1 1112222 4789999999999999999999864
No 114
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.99 E-value=1.5e-09 Score=82.74 Aligned_cols=118 Identities=13% Similarity=0.105 Sum_probs=61.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHH----HcC-ChHHHHHHHHHHcCCCCCHHHH-------HHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV----AAK-TPLGIKAKEAMDKGELVSDDLV-------VGII 100 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~l 100 (195)
.+|+|.||+||||||+++.|+..++..++..+..+.... ... ...+..+.+..+.+.+...-.. ...+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~~ 82 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIEI 82 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHHH
Confidence 479999999999999999999987654444322221110 000 0011222222222211100000 0113
Q ss_pred HHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 101 DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 101 ~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
...+.. +..+|++|. ......+.+.+ ...-.+|||++|.+++.+|+..|.
T Consensus 83 ~~~l~~---g~~VI~~G~---~~~~~~~~~~~----~~~~~vi~l~~s~e~l~~RL~~R~ 132 (186)
T PRK10078 83 DLWLHA---GFDVLVNGS---RAHLPQARARY----QSALLPVCLQVSPEILRQRLENRG 132 (186)
T ss_pred HHHHhC---CCEEEEeCh---HHHHHHHHHHc----CCCEEEEEEeCCHHHHHHHHHHhC
Confidence 333333 445777765 11112222222 223368999999999999999885
No 115
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.99 E-value=1.1e-08 Score=77.75 Aligned_cols=109 Identities=19% Similarity=0.135 Sum_probs=65.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh---C--CceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHH--HHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV--VGIIDE 102 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~---~--~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~ 102 (195)
.++.+|+|+|++||||||+++.|...+ | ..+++.+ .+++.+..+. .+.+.+.. ...+..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d-~~r~~l~~~~-------------~~~~~~~~~~~~~~~~ 81 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGD-NVRHGLNKDL-------------GFSEEDRKENIRRIGE 81 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCh-HHHhhhcccc-------------CCCHHHHHHHHHHHHH
Confidence 457899999999999999999999887 2 4566664 4444332111 01111100 111111
Q ss_pred HHc-CCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHH
Q 029307 103 AMK-KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEER 155 (195)
Q Consensus 103 ~l~-~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~R 155 (195)
... ....+..+|+|.......++..+...+... .-.+||+++|.+++.+|
T Consensus 82 ~~~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~---~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 82 VAKLFVRNGIIVITSFISPYRADRQMVRELIEKG---EFIEVFVDCPLEVCEQR 132 (184)
T ss_pred HHHHHHcCCCEEEEecCCCCHHHHHHHHHhCcCC---CeEEEEEeCCHHHHHHh
Confidence 111 122356788887655555665555544321 22689999999999999
No 116
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.98 E-value=3.6e-09 Score=91.70 Aligned_cols=109 Identities=20% Similarity=0.228 Sum_probs=64.0
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCCCC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKPSCQK 111 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~ 111 (195)
|.|+|+|+|||||||+++.|++++|+.+++.|+++.+... ..+.+.+.. +.....+.-.+.+.+.... ..
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g------~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~---~~ 71 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREG------RSVRRIFEEDGEEYFRLKEKELLRELVER---DN 71 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcC------CCHHHHHHHhhhHHHHHHHHHHHHHHhhc---CC
Confidence 4699999999999999999999999999999888766421 112222211 1000011112222222111 12
Q ss_pred cEEEeCC--CCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcC
Q 029307 112 GFILDGF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (195)
Q Consensus 112 ~~iid~~--~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R 159 (195)
.+|-.|. .....++..+.+ ..+|||+++.+++.+|+..+
T Consensus 72 ~Vis~Gggvv~~~~~r~~l~~---------~~vI~L~as~e~l~~Rl~~~ 112 (488)
T PRK13951 72 VVVATGGGVVIDPENRELLKK---------EKTLFLYAPPEVLMERVTTE 112 (488)
T ss_pred EEEECCCccccChHHHHHHhc---------CeEEEEECCHHHHHHHhccC
Confidence 2332332 222333333321 25899999999999999765
No 117
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.98 E-value=7e-09 Score=83.44 Aligned_cols=111 Identities=18% Similarity=0.138 Sum_probs=62.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh-----CCceeehHHHHHHHHHcCC----hHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAVAAKT----PLGIKAKEAMDKGELVSDDLVVGIIDEAM 104 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~-----~~~~i~~d~l~r~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 104 (195)
+|+|+|.|||||||+|+.|++.+ .+.+++.+.+. +..+. ..-+..+ ..+...+...+
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---~~~~~y~~~~~Ek~~R-----------~~l~s~v~r~l 68 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---IDRNDYADSKKEKEAR-----------GSLKSAVERAL 68 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----TTSSS--GGGHHHHH-----------HHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---cchhhhhchhhhHHHH-----------HHHHHHHHHhh
Confidence 89999999999999999999976 24456643332 11110 0011111 11233333444
Q ss_pred cCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 105 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 105 ~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
.. ...+|+|+...-.-.+-.|..+....+... .+||++++.+.+.+|-.+|...
T Consensus 69 s~---~~iVI~Dd~nYiKg~RYelyclAr~~~~~~-c~i~~~~~~e~~~~~N~~R~~~ 122 (270)
T PF08433_consen 69 SK---DTIVILDDNNYIKGMRYELYCLARAYGTTF-CVIYCDCPLETCLQRNSKRPEP 122 (270)
T ss_dssp TT----SEEEE-S---SHHHHHHHHHHHHHTT-EE-EEEEEE--HHHHHHHHHHTT-S
T ss_pred cc---CeEEEEeCCchHHHHHHHHHHHHHHcCCCE-EEEEECCCHHHHHHhhhccCCC
Confidence 33 467899987655555555555556666655 8999999999999999999643
No 118
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.97 E-value=3.7e-09 Score=96.61 Aligned_cols=40 Identities=30% Similarity=0.413 Sum_probs=37.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA 72 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~ 72 (195)
++|.|.||+||||||+|+.|++++++.+++.+.++|....
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a~ 74 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFTL 74 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHH
Confidence 4899999999999999999999999999999999888754
No 119
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.96 E-value=6e-10 Score=87.47 Aligned_cols=39 Identities=38% Similarity=0.576 Sum_probs=36.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~ 70 (195)
+++|.|.|++||||||+++.|++++|+.+++.+.++|..
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~ 42 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAV 42 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHH
Confidence 478999999999999999999999999999999987764
No 120
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.95 E-value=3.9e-09 Score=78.39 Aligned_cols=104 Identities=20% Similarity=0.212 Sum_probs=62.2
Q ss_pred CCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCCCCcEEEeC--
Q 029307 41 PGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS-DDLVVGIIDEAMKKPSCQKGFILDG-- 117 (195)
Q Consensus 41 pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~iid~-- 117 (195)
|||||||+++.|++.+|+++++.|+++.+... ..+.+++.....-. ...-.+.+...+... ..+|..|
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g------~si~~i~~~~G~~~fr~~E~~~l~~l~~~~---~~VIa~GGG 71 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG------MSISEIFAEEGEEAFRELESEALRELLKEN---NCVIACGGG 71 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT------SHHHHHHHHHHHHHHHHHHHHHHHHHHCSS---SEEEEE-TT
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC------CcHHHHHHcCChHHHHHHHHHHHHHHhccC---cEEEeCCCC
Confidence 79999999999999999999999998866643 23333332210000 111233333333332 3344332
Q ss_pred CCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 118 FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
..........|.+ ...+|||+.+++++.+|+..+..
T Consensus 72 ~~~~~~~~~~L~~--------~g~vI~L~~~~~~l~~Rl~~~~~ 107 (158)
T PF01202_consen 72 IVLKEENRELLKE--------NGLVIYLDADPEELAERLRARDN 107 (158)
T ss_dssp GGGSHHHHHHHHH--------HSEEEEEE--HHHHHHHHHHHCT
T ss_pred CcCcHHHHHHHHh--------CCEEEEEeCCHHHHHHHHhCCCC
Confidence 3344444444442 23799999999999999988764
No 121
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.95 E-value=1e-08 Score=78.83 Aligned_cols=110 Identities=18% Similarity=0.151 Sum_probs=62.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh-----CCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHH--HHHHHHH
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD--LVVGIID 101 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~-----~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~ 101 (195)
+.+|.+|+|+|++||||||+++.|+..+ +..+++.|++ +..+... ..+.+.+ .....+.
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~-~~~~~~~-------------~~~~~~~~~~~~~~l~ 86 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV-RHGLCSD-------------LGFSDADRKENIRRVG 86 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH-Hhhhhhc-------------CCcCcccHHHHHHHHH
Confidence 3567899999999999999999999976 3456665443 3322111 0111111 1111111
Q ss_pred HHHcCCCCCCcEEEeCCCC-CHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHH
Q 029307 102 EAMKKPSCQKGFILDGFPR-TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEER 155 (195)
Q Consensus 102 ~~l~~~~~~~~~iid~~~~-~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~R 155 (195)
...........+|+..+.. ....+..+.+.+... .-++|||++|.+++.+|
T Consensus 87 ~~a~~~~~~G~~VI~~~~~~~~~~R~~~r~~l~~~---~~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 87 EVAKLMVDAGLVVLTAFISPHRAERQMVRERLGEG---EFIEVFVDTPLAICEAR 138 (198)
T ss_pred HHHHHHhhCCCEEEEEeCCCCHHHHHHHHHHcccC---CEEEEEEcCCHHHHHhc
Confidence 1111111122344455544 346666676665432 11479999999999999
No 122
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.94 E-value=1.6e-08 Score=76.12 Aligned_cols=108 Identities=11% Similarity=0.131 Sum_probs=60.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhC-----CceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHH--HHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV--VGIIDEA 103 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~-----~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~ 103 (195)
++.+|+|+|+|||||||+++.|+..+. +.+++.|.+ ++.+..+......-+ ...+ ...+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~~~~~~r----------~~~~~~~~~~a~~ 71 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLGFSKEDR----------DTNIRRIGFVANL 71 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCCCChhhH----------HHHHHHHHHHHHH
Confidence 467999999999999999999999872 566777543 443332111000000 0000 0111111
Q ss_pred HcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHH
Q 029307 104 MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 156 (195)
Q Consensus 104 l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl 156 (195)
+. ..+..+++++.......+..+... ...+ .+|||++|.+++.+|.
T Consensus 72 ~~--~~g~~vi~~~~~~~~~~~~~l~~~----~~~~-~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 72 LT--RHGVIVLVSAISPYRETREEVRAN----IGNF-LEVFVDAPLEVCEQRD 117 (175)
T ss_pred HH--hCCCEEEEecCCCCHHHHHHHHhh----cCCe-EEEEEcCCHHHHHHhC
Confidence 11 123456666553223333333332 1234 6999999999999994
No 123
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.94 E-value=1.1e-08 Score=76.93 Aligned_cols=120 Identities=18% Similarity=0.209 Sum_probs=68.0
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhC--CceeehHHHHHHHHHcCChHHHHHHHHHHcCCCC------C--HHH---HHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELV------S--DDL---VVGI 99 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~--~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~------~--~~~---~~~~ 99 (195)
.+|+|.|+|.|||||+++.|.+.+. +.++++|.+......... ....-+ + ... +...
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~----------~~~~g~~~~~~~~~~~~~~~~~~~~ 71 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRY----------RPGDGLEPAGDRPDGGPLFRRLYAA 71 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGG----------TSTTSEEEETTSEEE-HHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccc----------cCCccccccccCCchhHHHHHHHHH
Confidence 5899999999999999999999995 568888766553322110 000000 0 011 1111
Q ss_pred HHHHHcC-CCCCCcEEEeCCCCCHHH-HHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 029307 100 IDEAMKK-PSCQKGFILDGFPRTEVQ-AQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSG 166 (195)
Q Consensus 100 l~~~l~~-~~~~~~~iid~~~~~~~~-~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g 166 (195)
+...+.. ...+..+|+|........ ...+.+.|.. .+-++|-+.||.+++.+|-..|.- +..|
T Consensus 72 ~~~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~---~~vl~VgV~Cpleil~~RE~~RgD-R~~G 136 (174)
T PF07931_consen 72 MHAAIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLAG---LPVLFVGVRCPLEILERRERARGD-RPIG 136 (174)
T ss_dssp HHHHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHTT---S-EEEEEEE--HHHHHHHHHHHTS-SSTT
T ss_pred HHHHHHHHHhCCCCEEEecCccCcHHHHHHHHHHhCC---CceEEEEEECCHHHHHHHHHhcCC-cchH
Confidence 1222211 223668999987766654 4445555543 344789999999999999999963 3444
No 124
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=98.93 E-value=4.5e-09 Score=79.89 Aligned_cols=117 Identities=21% Similarity=0.183 Sum_probs=65.8
Q ss_pred EEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHH------------HHHHHHHH
Q 029307 37 LVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV------------VGIIDEAM 104 (195)
Q Consensus 37 i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~l~~~l 104 (195)
|.|+.||||||+++.|++++....+.. -+ .......+.|+.+++.+......+.... ...+...+
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~-~~--~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l 77 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKV-II--TFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPAL 77 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEE-EE--EESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcc-cc--cCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999884322210 00 0001133445556665553323322111 12222333
Q ss_pred cCCCCCCcEEEeCCCCC------------HHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 105 KKPSCQKGFILDGFPRT------------EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 105 ~~~~~~~~~iid~~~~~------------~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
.. +..+|+|.|..+ ......+...+. ...||++|||++++++..+|+..|..
T Consensus 78 ~~---g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~--~~~PDl~~~Ldv~pe~~~~R~~~r~~ 141 (186)
T PF02223_consen 78 KR---GKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIF--LPKPDLTFFLDVDPEEALKRIAKRGE 141 (186)
T ss_dssp HT---TSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHH--TTE-SEEEEEECCHHHHHHHHHHTSS
T ss_pred cC---CCEEEEechhHHHHHhCccccCCcchhhhHHHHHhc--CCCCCEEEEEecCHHHHHHHHHcCCc
Confidence 32 567888865211 222222222221 12899999999999999999999975
No 125
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=98.93 E-value=2.1e-08 Score=79.57 Aligned_cols=128 Identities=15% Similarity=0.182 Sum_probs=72.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceee---hHHHHHHHHH--------c--C---------------ChHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA---TGDMLRAAVA--------A--K---------------TPLGIKA 81 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~---~d~l~r~~~~--------~--~---------------~~~~~~~ 81 (195)
...++|++.|+.|||||++|+.|++++|+.|+- +|+++-.... + . .++...+
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~ 148 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAM 148 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHH
Confidence 345799999999999999999999999987765 3332211110 0 0 0011111
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCCCCcEEEeCCCCC-HHHHHHHH-----------------H-HHhhcCCCcCEE
Q 029307 82 KEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRT-EVQAQKLD-----------------E-MLEKQGKKVDKV 142 (195)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iid~~~~~-~~~~~~l~-----------------~-~l~~~~~~~d~v 142 (195)
+..+-+.. -.....++... +..+.|+|++..|.. ....+.+. + .+.+. -.|.+|
T Consensus 149 Q~r~y~~R---~~QY~dAL~Hi---L~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~l-l~PHLV 221 (393)
T KOG3877|consen 149 QDRIYNCR---FDQYLDALAHI---LNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQL-LWPHLV 221 (393)
T ss_pred HHHHHHhH---HHHHHHHHHHH---HhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhh-cCccEE
Confidence 11111110 00112222222 334678999976642 22222111 0 01111 458899
Q ss_pred EEEEcCHHHHHHHHhcCCCCCC
Q 029307 143 LNFAIDDAVLEERITGRWIHPS 164 (195)
Q Consensus 143 i~l~~~~e~~~~Rl~~R~~~~~ 164 (195)
|||+.|...+++++.+|+...+
T Consensus 222 iYld~Pv~~v~~~Ik~rg~~~E 243 (393)
T KOG3877|consen 222 IYLDTPVNKVLENIKRRGNTDE 243 (393)
T ss_pred EEEcCCcHHHHHHHHhcCCCcc
Confidence 9999999999999999976544
No 126
>PHA03132 thymidine kinase; Provisional
Probab=98.93 E-value=1.3e-08 Score=89.08 Aligned_cols=127 Identities=12% Similarity=0.033 Sum_probs=69.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeehHH---HHHHHHHcCChHHHHHHHHHHcCC--CCC-HHHHH--------
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGD---MLRAAVAAKTPLGIKAKEAMDKGE--LVS-DDLVV-------- 97 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~---l~r~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~-------- 97 (195)
.++|+|.|+.||||||+++.|++.+|..++-..+ ..+.. ....+..+.+.+.++. ... ...+.
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~v---y~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA~ 333 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEV---YSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFAT 333 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhc---cccHHHHHHHHHhcccccCCCHHHHHHHHHHHHhh
Confidence 5789999999999999999999988544333211 11111 0122444444443221 111 11110
Q ss_pred ------HHHHHH---Hc----CCCCCCcEEEeCCCCCHHH-------------HHHHHHHHhhc-CCCcCEEEEEEcCHH
Q 029307 98 ------GIIDEA---MK----KPSCQKGFILDGFPRTEVQ-------------AQKLDEMLEKQ-GKKVDKVLNFAIDDA 150 (195)
Q Consensus 98 ------~~l~~~---l~----~~~~~~~~iid~~~~~~~~-------------~~~l~~~l~~~-~~~~d~vi~l~~~~e 150 (195)
..+... .. ....+..+|+|-++..... ...+...+... ...||++|||+++++
T Consensus 334 Pfl~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~pe 413 (580)
T PHA03132 334 PFRALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLNSE 413 (580)
T ss_pred HHHHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCCHH
Confidence 111111 11 1233557888876533211 11223333322 235899999999999
Q ss_pred HHHHHHhcCCC
Q 029307 151 VLEERITGRWI 161 (195)
Q Consensus 151 ~~~~Rl~~R~~ 161 (195)
++.+|+.+|..
T Consensus 414 ~alkRIkkRgR 424 (580)
T PHA03132 414 ENLRRVKKRGR 424 (580)
T ss_pred HHHHHHHhcCc
Confidence 99999999953
No 127
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.92 E-value=6.6e-09 Score=77.60 Aligned_cols=106 Identities=18% Similarity=0.208 Sum_probs=59.8
Q ss_pred EcCCCCChhHHHHHHHHHhCCceeehHHHHHHH-HHcCChHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHcCCCC
Q 029307 38 VGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA-VAAKTPLGIKAKEAMDKGELVSDD-------LVVGIIDEAMKKPSC 109 (195)
Q Consensus 38 ~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~l~~~~~ 109 (195)
.|++||||||+++.|+..+|..+++.|.+.... ... +..+....+. .+.......... .
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~ 67 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEK-----------MASGEPLNDDDRKPWLQALNDAAFAMQRT--N 67 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhcc-----------ccCCCCCChhhHHHHHHHHHHHHHHHHHc--C
Confidence 499999999999999999999999985442111 000 0001001010 011111111111 1
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 110 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 110 ~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
+..+|+ ........+.. +...+..+ .+|||++|.+++.+|+.+|..+
T Consensus 68 ~~~viv-~s~~~~~~r~~----~~~~~~~~-~~v~l~a~~~~l~~Rl~~R~~~ 114 (163)
T PRK11545 68 KVSLIV-CSALKKHYRDL----LREGNPNL-SFIYLKGDFDVIESRLKARKGH 114 (163)
T ss_pred CceEEE-EecchHHHHHH----HHccCCCE-EEEEEECCHHHHHHHHHhccCC
Confidence 233444 33333333333 33334444 8999999999999999999754
No 128
>PRK12338 hypothetical protein; Provisional
Probab=98.92 E-value=2.7e-08 Score=81.38 Aligned_cols=128 Identities=16% Similarity=0.254 Sum_probs=74.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcC--ChH----HHH-HHH--HHHcCC-CCC--------
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAK--TPL----GIK-AKE--AMDKGE-LVS-------- 92 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~--~~~----~~~-~~~--~~~~~~-~~~-------- 92 (195)
+|.+|+|.|+|||||||+|+.|++.+|+.++..+|.+++.+..- .+. -.. ... .+.... ..+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~g 82 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICAG 82 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHHH
Confidence 46799999999999999999999999999997778888876521 100 000 000 000000 111
Q ss_pred ----HHHHHHHHHHHHcC-CCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 93 ----DDLVVGIIDEAMKK-PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 93 ----~~~~~~~l~~~l~~-~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
...+...+...+.. ...+..+|++|........... ..... ... .++++..+.+...+|...|-..
T Consensus 83 f~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~--~~~~~-~~v-~~~vl~~dee~h~~Rf~~R~~~ 153 (319)
T PRK12338 83 FEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIE--QFEEN-ASI-HFFILSADEEVHKERFVKRAME 153 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhh--hhccc-Cce-EEEEEECCHHHHHHHHHHhhhc
Confidence 12222332222222 1235579999987665443321 11111 222 4555568889999999997643
No 129
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.87 E-value=1.2e-08 Score=92.38 Aligned_cols=38 Identities=32% Similarity=0.446 Sum_probs=35.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV 71 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~ 71 (195)
+|.|.|||||||||+++.|++++|+.+++.+.++|...
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~ 40 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACA 40 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHH
Confidence 79999999999999999999999999999999887754
No 130
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.87 E-value=6.7e-08 Score=78.43 Aligned_cols=99 Identities=18% Similarity=0.222 Sum_probs=59.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CCCC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK-PSCQ 110 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~ 110 (195)
..+|+|+|++||||||+++.|.. .|+..++.-. ...+..++...... ....
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~~-~g~~~~d~~~---------------------------~~L~~~l~~~~~~~~~~~~ 57 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALED-LGYYCVDNLP---------------------------PSLLPKLVELLAQSGGIRK 57 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHHH-cCCeEECCcC---------------------------HHHHHHHHHHHHhcCCCCC
Confidence 34899999999999999999964 6776664311 11111121111111 1122
Q ss_pred CcEEEeCCCCCH-HHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcC
Q 029307 111 KGFILDGFPRTE-VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (195)
Q Consensus 111 ~~~iid~~~~~~-~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R 159 (195)
-.+++|...... .........+...+... .+|||+++.+++.+|+..+
T Consensus 58 ~av~iD~r~~~~~~~~~~~~~~L~~~g~~~-~iI~L~a~~e~L~~Rl~~~ 106 (288)
T PRK05416 58 VAVVIDVRSRPFFDDLPEALDELRERGIDV-RVLFLDASDEVLIRRYSET 106 (288)
T ss_pred eEEEEccCchhhHHHHHHHHHHHHHcCCcE-EEEEEECCHHHHHHHHhhc
Confidence 357777543322 23333444455544443 6899999999999999864
No 131
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.87 E-value=8.5e-09 Score=77.52 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=66.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChH--------HHHHHHHHHcCCCCCHHH-------
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPL--------GIKAKEAMDKGELVSDDL------- 95 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~--------~~~~~~~~~~~~~~~~~~------- 95 (195)
++++|+|+||+|+||||+.+.|.+.. -..+|+..-.|.. ..+... .+.+.+.+..+.++....
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~p-R~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG 80 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKP-RPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG 80 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCC-CCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence 57899999999999999999999988 4444442222211 111111 133444444444432211
Q ss_pred -HHHHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCE-EEEEEcCH-HHHHHHHhcCCCCC
Q 029307 96 -VVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDK-VLNFAIDD-AVLEERITGRWIHP 163 (195)
Q Consensus 96 -~~~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~-vi~l~~~~-e~~~~Rl~~R~~~~ 163 (195)
....+...+.. +..+++|-. ..-+.++.+. .|+. .||+..|. +++.+|+..|.++.
T Consensus 81 T~~~~ve~~~~~---G~~vildId---~qGa~qvk~~------~p~~v~IFi~pPs~eeL~~RL~~Rgtds 139 (191)
T COG0194 81 TSREPVEQALAE---GKDVILDID---VQGALQVKKK------MPNAVSIFILPPSLEELERRLKGRGTDS 139 (191)
T ss_pred CcHHHHHHHHhc---CCeEEEEEe---hHHHHHHHHh------CCCeEEEEEcCCCHHHHHHHHHccCCCC
Confidence 13334444433 566787733 3333334333 2344 44444433 99999999998653
No 132
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.87 E-value=1.8e-09 Score=82.15 Aligned_cols=119 Identities=21% Similarity=0.221 Sum_probs=67.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh--CCcee--ehHHHHHHHHHcCChH----HHHHHHHHHcCCCCCH--------HH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY--CLCHL--ATGDMLRAAVAAKTPL----GIKAKEAMDKGELVSD--------DL 95 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~--~~~~i--~~d~l~r~~~~~~~~~----~~~~~~~~~~~~~~~~--------~~ 95 (195)
+++|+|+||+||||+|+++.|.+.+ ++..+ ......|..-..+.+. ...+.+..+.+.++.. .+
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 4579999999999999999999986 22211 1100001000001111 1344455555544322 12
Q ss_pred HHHHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEE-cCHHHHHHHHhcCCC
Q 029307 96 VVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA-IDDAVLEERITGRWI 161 (195)
Q Consensus 96 ~~~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~-~~~e~~~~Rl~~R~~ 161 (195)
....+...+.. ++.+|+|..+....+. .+. ...+ .+||+. .+.+++.+|+.+|..
T Consensus 82 ~~~~i~~~~~~---~~~~ild~~~~~~~~l---~~~----~~~~-~vIfi~~~s~~~l~~rl~~R~~ 137 (184)
T smart00072 82 SKETIRQVAEQ---GKHCLLDIDPQGVKQL---RKA----QLYP-IVIFIAPPSSEELERRLRGRGT 137 (184)
T ss_pred CHHHHHHHHHc---CCeEEEEECHHHHHHH---HHh----CCCc-EEEEEeCcCHHHHHHHHHhcCC
Confidence 23445555544 5679999775554443 222 2345 789998 666789999999853
No 133
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.87 E-value=1.8e-08 Score=74.34 Aligned_cols=114 Identities=19% Similarity=0.185 Sum_probs=67.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh-CCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHH---HHHcCC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIID---EAMKKP 107 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~-~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~l~~~ 107 (195)
+++++++|.||+||||+++...+.+ .+.++|.++++-+...+. .+. .-++.+. .++.+....+-. .++...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~-glv-e~rD~~R---klp~e~Q~~lq~~Aa~rI~~~ 78 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKK-GLV-EHRDEMR---KLPLENQRELQAEAAKRIAEM 78 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHh-CCc-ccHHHHh---cCCHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999988 888899999876654421 111 1122222 233333222222 222221
Q ss_pred CCCCcEEEeCCCC--CHH-H----HHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHh
Q 029307 108 SCQKGFILDGFPR--TEV-Q----AQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 157 (195)
Q Consensus 108 ~~~~~~iid~~~~--~~~-~----~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~ 157 (195)
. ..+|+|.+.. +.. . ..+..+. ..||.++.|.++++++..|-.
T Consensus 79 ~--~~iivDtH~~IkTP~GylpgLP~~Vl~~-----l~pd~ivllEaDp~~Il~RR~ 128 (189)
T COG2019 79 A--LEIIVDTHATIKTPAGYLPGLPSWVLEE-----LNPDVIVLLEADPEEILERRL 128 (189)
T ss_pred h--hceEEeccceecCCCccCCCCcHHHHHh-----cCCCEEEEEeCCHHHHHHHHh
Confidence 1 1277885421 110 0 1111222 379999999999988777644
No 134
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.86 E-value=1.1e-07 Score=74.30 Aligned_cols=120 Identities=21% Similarity=0.188 Sum_probs=70.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhC-----CceeehHHHHHHHHHcC---------ChHHHHHHHHHHcCCCCCHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAK---------TPLGIKAKEAMDKGELVSDDL 95 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~-----~~~i~~d~l~r~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 95 (195)
..+.+|+++|.||.|||++|+.|+..++ ..+++++++=|+..... ...+..+++.+.. .
T Consensus 10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~-------~ 82 (222)
T PF01591_consen 10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAK-------E 82 (222)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHH-------H
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHH-------H
Confidence 3457899999999999999999998774 46889988766665431 1122222221111 1
Q ss_pred HHHHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhc
Q 029307 96 VVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG 158 (195)
Q Consensus 96 ~~~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~ 158 (195)
..+-+...++. +.+..-|+|+.+.+.+.+..+.+.+...+..+ ++|-..|+.+.+.++-..
T Consensus 83 ~l~dl~~~l~~-~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~v-lFIEsic~D~~ii~~NI~ 143 (222)
T PF01591_consen 83 ALEDLIEWLQE-EGGQVAIFDATNSTRERRKMLVERFKEHGIKV-LFIESICDDPEIIERNIR 143 (222)
T ss_dssp HHHHHHHHHHT-S--SEEEEES---SHHHHHHHHHHHHHTT-EE-EEEEEE---HHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcE-EEEEEEeCCHHHHHHHHH
Confidence 12222233332 23457899999999999999999888876444 455556666666555443
No 135
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.86 E-value=5.7e-09 Score=79.12 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=68.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh-----CCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK-- 106 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~-----~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-- 106 (195)
+|+|.|+|||||||+|+.|++.+ +..+|+.|++.+.........+ .......+.-+.+.+.+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g-----~~d~~~~~d~~~l~~~l~~l~~~~~ 75 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDG-----NYDFESILDLDLLNKNLHDLLNGKE 75 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCC-----CCCCCccccHHHHHHHHHHHHCCCe
Confidence 58999999999999999999986 4678999888753200000000 00000001122222222221111
Q ss_pred --------------------CCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHH-HHHHHhcCCCCCCC
Q 029307 107 --------------------PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAV-LEERITGRWIHPSS 165 (195)
Q Consensus 107 --------------------~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~-~~~Rl~~R~~~~~~ 165 (195)
......+|++|...-. ..+.+ .+|+.||++++.+. +..|-..|.. ...
T Consensus 76 ~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~---~~l~~-------~~d~~I~vd~~~~~~rl~rri~RD~-~~r 144 (179)
T cd02028 76 VELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALN---ERLRS-------LLDIRVAVSGGVHLNRLLRRVVRDI-QFR 144 (179)
T ss_pred eecccceeECCccCCCceEEeCCCCEEEEecHHhcC---HhHHh-------hcCEEEEEeCCccHHHHHHHHHHhH-Hhh
Confidence 1123467888764322 12332 36899999999998 7777776665 344
Q ss_pred Cceee
Q 029307 166 GRTYH 170 (195)
Q Consensus 166 g~~~~ 170 (195)
|++.+
T Consensus 145 g~~~~ 149 (179)
T cd02028 145 GYSAE 149 (179)
T ss_pred CCCHH
Confidence 55443
No 136
>PRK05439 pantothenate kinase; Provisional
Probab=98.86 E-value=2e-08 Score=82.14 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=31.9
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhC-------CceeehHHHH
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC-------LCHLATGDML 67 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~-------~~~i~~d~l~ 67 (195)
.+.|.+|+|+|+|||||||+|+.|+..++ +.+++.|+++
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 35677999999999999999999998653 4577777764
No 137
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.85 E-value=9e-09 Score=79.06 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=29.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh---CCceeehHHHH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEY---CLCHLATGDML 67 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~---~~~~i~~d~l~ 67 (195)
+|+|+|++||||||+++.|+..+ +..+++.|++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence 58999999999999999999987 46788887654
No 138
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.85 E-value=1.9e-08 Score=78.77 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=28.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC-------CceeehHHHH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYC-------LCHLATGDML 67 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~-------~~~i~~d~l~ 67 (195)
+|.|.|++||||||+++.|+..++ +.+++.|++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 588999999999999999998873 4567777653
No 139
>PLN02348 phosphoribulokinase
Probab=98.84 E-value=1.6e-08 Score=84.64 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=26.4
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
..++.+|.|.|++||||||+++.|++.++
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45678999999999999999999999986
No 140
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.83 E-value=2.9e-08 Score=80.58 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=30.0
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhC-------CceeehHHHH
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC-------LCHLATGDML 67 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~-------~~~i~~d~l~ 67 (195)
.+.|.+|+|.|++||||||+++.|...+. +..++.|...
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 45678999999999999999998866552 4456666543
No 141
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.81 E-value=1.8e-08 Score=76.81 Aligned_cols=120 Identities=19% Similarity=0.139 Sum_probs=65.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChH--------HHHHHHHHHcCCCCCH--------H
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPL--------GIKAKEAMDKGELVSD--------D 94 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~--------~~~~~~~~~~~~~~~~--------~ 94 (195)
++++|+|+||+||||||+++.|.+.+.-.+++....-|. ...+... -+.+......+.++.. .
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~-~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG 81 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRA-PRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG 81 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCC-CCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence 578999999999999999999998763223332111111 0101000 1223333334433211 1
Q ss_pred HHHHHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcC-HHHHHHHHhcCCC
Q 029307 95 LVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID-DAVLEERITGRWI 161 (195)
Q Consensus 95 ~~~~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~~ 161 (195)
+..+.+...+.. +..+|+|.. ..-...+.+.. ...-.+||+..| .+++.+|+.+|..
T Consensus 82 t~~~~i~~~~~~---g~~~i~d~~---~~g~~~l~~~~----~~~~~~Ifi~pps~e~l~~RL~~R~~ 139 (186)
T PRK14737 82 TPKAFIEDAFKE---GRSAIMDID---VQGAKIIKEKF----PERIVTIFIEPPSEEEWEERLIHRGT 139 (186)
T ss_pred CcHHHHHHHHHc---CCeEEEEcC---HHHHHHHHHhC----CCCeEEEEEECCCHHHHHHHHHhcCC
Confidence 223434444444 566888854 33333343321 111157888874 6999999999964
No 142
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.81 E-value=2.1e-09 Score=82.42 Aligned_cols=118 Identities=19% Similarity=0.157 Sum_probs=63.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCC---------ceeehHHHHHHHHHcCChHHHHHHHHHHcC------CCCCHHHHHH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCL---------CHLATGDMLRAAVAAKTPLGIKAKEAMDKG------ELVSDDLVVG 98 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~---------~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 98 (195)
+|.|+|++||||||+|+.|+..++. ..++.++........ ......... ..+.-+.+.+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~------~~~~~~~~~~~~~~p~a~d~~~l~~ 74 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLR------DRKGRGENRYNFDHPDAFDFDLLKE 74 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHH------HHHHHCTTTSSTTSGGGBSHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchh------hHhhccccccCCCCccccCHHHHHH
Confidence 6899999999999999999999962 245555432221100 000000000 1122233333
Q ss_pred HHHHHHcC---------------------CCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHh
Q 029307 99 IIDEAMKK---------------------PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 157 (195)
Q Consensus 99 ~l~~~l~~---------------------~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~ 157 (195)
.+...... ......+|++|...-.... +. ..+|+.|||+++.+++..|..
T Consensus 75 ~l~~L~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~--l~-------~l~D~~ifld~~~~~~l~Rri 145 (194)
T PF00485_consen 75 DLKALKNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEE--LR-------DLFDLKIFLDADEDLRLERRI 145 (194)
T ss_dssp HHHHHHTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHC--HG-------GG-SEEEEEEE-HHHHHHHHH
T ss_pred HHHHHhCCCcccccccccccccceeeeeecCCCCEEEEcccceeeeee--ec-------ccceeEEEecccHHHHHHHHh
Confidence 33322111 1123467888764221111 11 257899999999999999988
Q ss_pred cCCCCCCCCc
Q 029307 158 GRWIHPSSGR 167 (195)
Q Consensus 158 ~R~~~~~~g~ 167 (195)
.|... ..|+
T Consensus 146 ~RD~~-~rG~ 154 (194)
T PF00485_consen 146 QRDVA-ERGR 154 (194)
T ss_dssp HHHHH-HS-S
T ss_pred hhhcc-ccCC
Confidence 88763 2354
No 143
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.79 E-value=5.8e-08 Score=76.36 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=25.8
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
..++.+|+|.|++||||||+++.|+..+.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46678999999999999999999998773
No 144
>PRK15453 phosphoribulokinase; Provisional
Probab=98.77 E-value=1.9e-08 Score=80.78 Aligned_cols=38 Identities=11% Similarity=0.191 Sum_probs=31.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhC-----CceeehHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDML 67 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~-----~~~i~~d~l~ 67 (195)
+++++|+|+|.|||||||+++.|++.++ ..+++.|++.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh 45 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH 45 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence 4567999999999999999999998774 4567776654
No 145
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.77 E-value=6.5e-08 Score=73.00 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
.+|+|+|++||||||+++.|+..++
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999999875
No 146
>PRK07429 phosphoribulokinase; Provisional
Probab=98.77 E-value=7.9e-08 Score=79.40 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=32.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhC---CceeehHHH
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC---LCHLATGDM 66 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~---~~~i~~d~l 66 (195)
..++.+|.|+|++||||||+++.|+..++ ..++..|++
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~ 45 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY 45 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc
Confidence 35678999999999999999999999886 567777765
No 147
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.77 E-value=5.9e-08 Score=86.96 Aligned_cols=110 Identities=13% Similarity=0.081 Sum_probs=67.0
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh-----CCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHH----HHHH
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDL----VVGI 99 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~-----~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 99 (195)
+.++.+|+++|.|||||||+|+.|++++ ++.+++.|+ +|+.+..+. .+.++. +..+
T Consensus 457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~-~r~~l~~~~--------------~~~~~~r~~~~~~l 521 (632)
T PRK05506 457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDN-VRHGLNRDL--------------GFSDADRVENIRRV 521 (632)
T ss_pred CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChh-hhhccCCCC--------------CCCHHHHHHHHHHH
Confidence 3457899999999999999999999987 346777744 555443211 111111 1111
Q ss_pred HHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHH
Q 029307 100 IDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 156 (195)
Q Consensus 100 l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl 156 (195)
..........+..+|+|........+..+.+.+... .+ .+|||++|.+++.+|.
T Consensus 522 ~~~a~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~~--~~-~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 522 AEVARLMADAGLIVLVSFISPFREERELARALHGEG--EF-VEVFVDTPLEVCEARD 575 (632)
T ss_pred HHHHHHHHhCCCEEEEECCCCCHHHHHHHHHhcccC--Ce-EEEEECCCHHHHHhhC
Confidence 111111112245677776544555665555543221 22 7999999999999994
No 148
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.73 E-value=4.3e-08 Score=62.62 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+|+|+|+|||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999985
No 149
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.73 E-value=3.8e-08 Score=76.27 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
+..+++|+|+||+||||||+++.|.+.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 456779999999999999999999864
No 150
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.73 E-value=2.2e-07 Score=75.45 Aligned_cols=124 Identities=16% Similarity=0.182 Sum_probs=71.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCc-eeehHHHHHHHHHcC--C----hHHHHHHHHHH--cCCCCCHH-H----
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLC-HLATGDMLRAAVAAK--T----PLGIKAKEAMD--KGELVSDD-L---- 95 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~-~i~~d~l~r~~~~~~--~----~~~~~~~~~~~--~~~~~~~~-~---- 95 (195)
+.|++|+|.|++||||||+|..|++++|.. +++. |.+++.+..- . .+......... ....-+++ .
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~-D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~ 168 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGT-DSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGF 168 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEec-hHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhH
Confidence 578899999999999999999999999987 5675 6666555421 0 01000000010 00001111 1
Q ss_pred ----------HHHHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEE-cCHHHHHHHHhcCCCC
Q 029307 96 ----------VVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA-IDDAVLEERITGRWIH 162 (195)
Q Consensus 96 ----------~~~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~-~~~e~~~~Rl~~R~~~ 162 (195)
+...+...+.+ +...|++|..........+. ... ... ..+++. .+.+..++|...|...
T Consensus 169 ~~~~~~v~~gi~~~I~~~~~~---g~s~IiEGvhl~P~~i~~~~---~~~-~~~-i~~~l~i~~ee~h~~RF~~R~~~ 238 (301)
T PRK04220 169 ERHVEPVSVGVEAVIERALKE---GISVIIEGVHIVPGFIKEKY---LEN-PNV-FMFVLTLSDEEAHKARFYARARV 238 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---CCcEEEecCCCCHHHHHHhh---hcC-CCE-EEEEEEECCHHHHHHHHHHHHhh
Confidence 22333333333 56799999987776543321 111 122 334444 5669999998887643
No 151
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.72 E-value=4.8e-07 Score=72.65 Aligned_cols=103 Identities=23% Similarity=0.311 Sum_probs=63.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CC-CC
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP-SC-QK 111 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~-~~ 111 (195)
+|+|+|.+||||||..+.|.. +|+..++- +|...+.+++....... .. .-
T Consensus 3 ~vIiTGlSGaGKs~Al~~lED-~Gy~cvDN---------------------------lP~~Ll~~l~~~~~~~~~~~~~~ 54 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRALED-LGYYCVDN---------------------------LPPSLLPQLIELLAQSNSKIEKV 54 (284)
T ss_pred EEEEeCCCcCCHHHHHHHHHh-cCeeEEcC---------------------------CcHHHHHHHHHHHHhcCCCCceE
Confidence 799999999999999998855 78776652 33444444433322111 11 22
Q ss_pred cEEEeCCCCCH-HHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhc-CCCCCCC
Q 029307 112 GFILDGFPRTE-VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITG-RWIHPSS 165 (195)
Q Consensus 112 ~~iid~~~~~~-~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~-R~~~~~~ 165 (195)
.+++|.-.... .........+...+..+ .++||+++.+++.+|..+ |+.|+-.
T Consensus 55 Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~-~ilFLdA~d~~LirRy~eTRR~HPL~ 109 (284)
T PF03668_consen 55 AIVIDIRSREFFEDLFEALDELRKKGIDV-RILFLDASDEVLIRRYSETRRRHPLS 109 (284)
T ss_pred EEEEeCCChHHHHHHHHHHHHHHhcCCce-EEEEEECChHHHHHHHHhccCCCCCC
Confidence 56777433221 12222222234445556 799999999999999987 5555444
No 152
>PHA00729 NTP-binding motif containing protein
Probab=98.72 E-value=1.5e-07 Score=73.47 Aligned_cols=112 Identities=15% Similarity=0.087 Sum_probs=64.0
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCC--ceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCL--CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 110 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~--~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 110 (195)
..|+|+|+||+||||+|..|++.++. ..+..++... . ......+++-..+...+..........
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~---d-----------~~~~~~fid~~~Ll~~L~~a~~~~~~~ 83 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAW---Q-----------YVQNSYFFELPDALEKIQDAIDNDYRI 83 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHH---h-----------cCCcEEEEEHHHHHHHHHHHHhcCCCC
Confidence 47999999999999999999998752 1122211000 0 001112233333444444433332212
Q ss_pred CcEEEeCCCCCHHH---H-------HHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 111 KGFILDGFPRTEVQ---A-------QKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 111 ~~~iid~~~~~~~~---~-------~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
...|+|++...... . ..+...+. ..+++++++.++++.+.+++.+|..
T Consensus 84 dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLr---SR~~l~il~~ls~edL~~~Lr~Rg~ 141 (226)
T PHA00729 84 PLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIR---TRVSAVIFTTPSPEDLAFYLREKGW 141 (226)
T ss_pred CEEEEeCCchhhcccchhhhccchHHHHHHHHH---hhCcEEEEecCCHHHHHHHHHhCCC
Confidence 34688874322211 1 12333332 2577899999999999999999864
No 153
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.64 E-value=6e-08 Score=73.18 Aligned_cols=119 Identities=17% Similarity=0.178 Sum_probs=61.9
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHc---CCh----HHHHHHHHHHcCCCCCH--------HHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA---KTP----LGIKAKEAMDKGELVSD--------DLVV 97 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~---~~~----~~~~~~~~~~~~~~~~~--------~~~~ 97 (195)
++|+|.||+||||||+++.|++.+...+++.....|+.... +.. ....+......+.++.. ....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 81 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK 81 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence 58999999999999999999997754444432211111000 000 00112222222222110 1112
Q ss_pred HHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 98 GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 98 ~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
..+...+.+ +..+|+|.. ......+.+.+ ..+..++++..+.+++.+|+..|..
T Consensus 82 ~~i~~~~~~---g~~vi~d~~---~~~~~~~~~~~----~~~~~i~~~~~~~e~~~~Rl~~r~~ 135 (180)
T TIGR03263 82 SPVEEALAA---GKDVLLEID---VQGARQVKKKF----PDAVSIFILPPSLEELERRLRKRGT 135 (180)
T ss_pred HHHHHHHHC---CCeEEEECC---HHHHHHHHHhC----CCcEEEEEECCCHHHHHHHHHHcCC
Confidence 334444443 556888843 33333333322 2332455556778999999998853
No 154
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.59 E-value=8e-07 Score=68.46 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
.++.+|+|+|++||||||+++.|+..+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3567999999999999999999999875
No 155
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=98.59 E-value=2e-07 Score=70.77 Aligned_cols=120 Identities=16% Similarity=0.139 Sum_probs=70.4
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh-CCceeehHHHHHHHHH--c--C-C------------hHHHHHHHHHHcCCCCCH-
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVA--A--K-T------------PLGIKAKEAMDKGELVSD- 93 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~-~~~~i~~d~l~r~~~~--~--~-~------------~~~~~~~~~~~~~~~~~~- 93 (195)
.+|.|.|...|||||+|+.|...| |...|+-||.+.-.-. . + . .+.+.+...+......++
T Consensus 5 ~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~~a 84 (225)
T KOG3308|consen 5 LIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAPEA 84 (225)
T ss_pred EEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccchH
Confidence 579999999999999999999988 7889998887643321 1 1 0 112223333333222211
Q ss_pred --HHH-----HHHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 94 --DLV-----VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 94 --~~~-----~~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
..+ .....+..........+++||+-... ..-+.. .+|..|.+..+.+++++|-..|..
T Consensus 85 r~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~--y~p~~~-------~~d~~im~~~~y~~~krRr~~Rt~ 150 (225)
T KOG3308|consen 85 REHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYN--YKPQVD-------LFDRIIMLTLDYETCKRRREARTY 150 (225)
T ss_pred hhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEe--cchhhh-------hhhhheeeeccHHHHHHhhccccc
Confidence 111 11111111111123468899873211 111111 467899999999999999998864
No 156
>PLN02165 adenylate isopentenyltransferase
Probab=98.53 E-value=5.8e-07 Score=74.00 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=35.8
Q ss_pred cCCCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHH
Q 029307 27 CASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (195)
Q Consensus 27 ~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l 66 (195)
+-+.++.+|+|+||+||||||++..|++.++..+++.|.+
T Consensus 38 ~~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 38 EQNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred ccCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 3466778999999999999999999999999999999765
No 157
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.53 E-value=1.8e-07 Score=74.68 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=29.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC-----CceeehHHHHH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLR 68 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~-----~~~i~~d~l~r 68 (195)
+|+|+|++||||||+++.|.+.++ ..+|+.|++.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 589999999999999999998773 45788777654
No 158
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.53 E-value=2e-06 Score=73.61 Aligned_cols=124 Identities=15% Similarity=0.184 Sum_probs=71.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCc-eeehHHHHHHHHHcCC------hHHH-HHH--HHHHcCC------CCCH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLC-HLATGDMLRAAVAAKT------PLGI-KAK--EAMDKGE------LVSD 93 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~-~i~~d~l~r~~~~~~~------~~~~-~~~--~~~~~~~------~~~~ 93 (195)
++|.+|+|.|++||||||++..|+..+|+. +++. |.+++.+..-. .+-. ... ..+.... ...+
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~t-D~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~ 331 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVST-DAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRA 331 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeeh-hHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccchH
Confidence 468899999999999999999999999987 5577 66666554210 0000 000 0110000 0111
Q ss_pred H-----------H---HHHHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEc-CHHHHHHHHhc
Q 029307 94 D-----------L---VVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAI-DDAVLEERITG 158 (195)
Q Consensus 94 ~-----------~---~~~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~-~~e~~~~Rl~~ 158 (195)
. . +..++...+.. +..+|+||.......... ....+..+ +.+++.+ +.++..+|+..
T Consensus 332 ~vi~Gf~~q~~~V~~gi~~vI~r~l~e---G~SvIIEGVHl~P~~i~~----~~~~~~~~-i~flv~isdeeeH~~Rf~~ 403 (475)
T PRK12337 332 EVLRGFRDQVQQVAVGLGAIQERSAQE---GTSLVLEGVHLVPGYLRH----PYQAGALV-VPMLVTLPDEALHRRRFEL 403 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc---CCeEEEECCCCCHHHHHH----HHhcCCce-EEEEEEECCHHHHHHHHHH
Confidence 1 1 23444445544 567999998777654331 11222223 3334444 56788889988
Q ss_pred CCCC
Q 029307 159 RWIH 162 (195)
Q Consensus 159 R~~~ 162 (195)
|...
T Consensus 404 Ra~~ 407 (475)
T PRK12337 404 RDRE 407 (475)
T ss_pred Hhhh
Confidence 8654
No 159
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.50 E-value=7.5e-07 Score=71.92 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=28.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh---CCceeehHHHH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEY---CLCHLATGDML 67 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~---~~~~i~~d~l~ 67 (195)
+|+|+|++||||||+++.|+..+ +..++..|++.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 48899999999999999999876 45577776653
No 160
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.49 E-value=8e-07 Score=66.69 Aligned_cols=120 Identities=22% Similarity=0.197 Sum_probs=76.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHH-----------HH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV-----------VG 98 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 98 (195)
.++.+|++.|..+|||||++..|...++- .... ..+-.....-+..|+.+..++.+..-+++..+ ..
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~~-~~~~-~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~ 80 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESLIP-GLDP-AELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS 80 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHHHh-ccCh-HHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence 45679999999999999999999998732 2222 22233334456778888888888777777654 22
Q ss_pred HHHHHHcCCCCCCcEEEeCCCCCHHHHH---HHHH-H---HhhcCCCcCEEEEEEcCHHHHHH
Q 029307 99 IIDEAMKKPSCQKGFILDGFPRTEVQAQ---KLDE-M---LEKQGKKVDKVLNFAIDDAVLEE 154 (195)
Q Consensus 99 ~l~~~l~~~~~~~~~iid~~~~~~~~~~---~l~~-~---l~~~~~~~d~vi~l~~~~e~~~~ 154 (195)
.+.+.+.. +..+|+|.|-..-..+. .+.. + ....-.+||+++||+++++.+.+
T Consensus 81 ~i~e~l~k---g~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~ 140 (208)
T KOG3327|consen 81 LIKEKLAK---GTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAAR 140 (208)
T ss_pred HHHHHHhc---CCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHH
Confidence 33333333 55689997753332221 1111 1 11122789999999999999543
No 161
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.45 E-value=3.5e-06 Score=66.52 Aligned_cols=104 Identities=22% Similarity=0.342 Sum_probs=64.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHH--cCCCCC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAM--KKPSCQ 110 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~~ 110 (195)
.+|+|+|.+|||||+..+.|.. +|+..++- +|...+-+++.-.. ......
T Consensus 2 ~lvIVTGlSGAGKsvAl~~lED-lGyycvDN---------------------------LPp~Llp~~~~~~~~~~~~~~k 53 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVLED-LGYYCVDN---------------------------LPPQLLPKLADLMLTLESRITK 53 (286)
T ss_pred cEEEEecCCCCcHHHHHHHHHh-cCeeeecC---------------------------CCHHHHHHHHHHHhhcccCCce
Confidence 3799999999999999998855 77766652 23334433333221 111112
Q ss_pred CcEEEeCCCCCHHHHHHHHHH---HhhcC-CCcCEEEEEEcCHHHHHHHHhc-CCCCCCCCc
Q 029307 111 KGFILDGFPRTEVQAQKLDEM---LEKQG-KKVDKVLNFAIDDAVLEERITG-RWIHPSSGR 167 (195)
Q Consensus 111 ~~~iid~~~~~~~~~~~l~~~---l~~~~-~~~d~vi~l~~~~e~~~~Rl~~-R~~~~~~g~ 167 (195)
-.+++|-- +......+.+. +...+ ..+ -++||+++.+++++|... |+.|+-.+.
T Consensus 54 vAv~iDiR--s~~~~~~l~~~l~~l~~~~~~~~-~iLFLeA~~~~Lv~RY~etRR~HPL~~~ 112 (286)
T COG1660 54 VAVVIDVR--SREFFGDLEEVLDELKDNGDIDP-RVLFLEADDETLVRRYSETRRSHPLSED 112 (286)
T ss_pred EEEEEecc--cchhHHHHHHHHHHHHhcCCCCc-eEEEEECchhHHHHHHhhhhhcCCCCcc
Confidence 35778843 33444444443 34442 345 699999999999999987 666654443
No 162
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=98.43 E-value=1.5e-06 Score=64.24 Aligned_cols=107 Identities=17% Similarity=0.204 Sum_probs=67.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHhC-CceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCcE
Q 029307 35 LILVGPPGSGKGTQSPIIKDEYC-LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGF 113 (195)
Q Consensus 35 I~i~G~pGsGKSTla~~L~~~~~-~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 113 (195)
|+=.+.+||||||++..|++-|| +-|+.-|++-.+ ......+.....+. ......+
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~k----------------------~~~~f~~~~l~~L~-~~~~~vV 58 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNITGK----------------------RKPKFIKAVLELLA-KDTHPVV 58 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCCCC----------------------CHHHHHHHHHHHHh-hCCCCEE
Confidence 44578999999999999999999 999998776221 11112222223331 1224568
Q ss_pred EEeCCCCCHHHHHHHHHHHhhcCC-------CcC-EEEEEEcC--H----HHHHHHHhcCCCCCC
Q 029307 114 ILDGFPRTEVQAQKLDEMLEKQGK-------KVD-KVLNFAID--D----AVLEERITGRWIHPS 164 (195)
Q Consensus 114 iid~~~~~~~~~~~l~~~l~~~~~-------~~d-~vi~l~~~--~----e~~~~Rl~~R~~~~~ 164 (195)
+.|-.+.....++++.+.+..... ... +.+....+ . +++.+|+.+|+-++.
T Consensus 59 iaDRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQ 123 (168)
T PF08303_consen 59 IADRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQ 123 (168)
T ss_pred EEeCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcc
Confidence 889888888888888776654322 111 11222221 2 678899999975543
No 163
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=98.39 E-value=3.8e-07 Score=72.59 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=25.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+.|.+|.|+|++|+||||+|+.|+..+
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll 106 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALL 106 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHH
Confidence 5778899999999999999999998876
No 164
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.37 E-value=1.7e-06 Score=75.88 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=31.3
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh-CCceeehHHH
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDM 66 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~-~~~~i~~d~l 66 (195)
...+.+|+|.|++||||||+++.|+..+ +...|+.|++
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 3456799999999999999999999987 4567777664
No 165
>PRK06761 hypothetical protein; Provisional
Probab=98.33 E-value=6.2e-07 Score=72.43 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
+++|+|+|+|||||||+++.|+++++...++.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v 34 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEV 34 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEE
Confidence 36899999999999999999999997544444
No 166
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=98.24 E-value=2.8e-06 Score=61.94 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=29.4
Q ss_pred HhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 23 ~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.|+.++..++..|||+|.+||||||+|-.|.+.+
T Consensus 22 eRq~l~~qkGcviWiTGLSgSGKStlACaL~q~L 55 (207)
T KOG0635|consen 22 ERQKLLKQKGCVIWITGLSGSGKSTLACALSQAL 55 (207)
T ss_pred HHHHHhcCCCcEEEEeccCCCCchhHHHHHHHHH
Confidence 3555567788999999999999999999999877
No 167
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=98.23 E-value=1.7e-05 Score=60.25 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=29.6
Q ss_pred hhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 029307 133 EKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGR 167 (195)
Q Consensus 133 ~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~ 167 (195)
......+|.+|||.+++++|.+|+..|....+.|-
T Consensus 148 ~~~~v~~dgiIYLrasPetc~~Ri~~R~R~EE~gi 182 (244)
T KOG4235|consen 148 RSMDVSLDGIIYLRASPETCYKRIYLRAREEEKGI 182 (244)
T ss_pred hccccccceEEEeecChHHHHHHHHHHhhhhhcCC
Confidence 34457899999999999999999999987766664
No 168
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.22 E-value=1.2e-06 Score=62.21 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=25.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 35 LILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 35 I~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
|+|.||||+||||+++.+++.++..++.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i 29 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEI 29 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccc
Confidence 68999999999999999999999766554
No 169
>PHA03136 thymidine kinase; Provisional
Probab=98.22 E-value=4.9e-05 Score=63.42 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=24.3
Q ss_pred CCcCEEEEEEcCHHHHHHHHhcCCCCCC
Q 029307 137 KKVDKVLNFAIDDAVLEERITGRWIHPS 164 (195)
Q Consensus 137 ~~~d~vi~l~~~~e~~~~Rl~~R~~~~~ 164 (195)
..+|.+||++++++++.+|+.+|....+
T Consensus 190 p~pD~IIyL~l~~e~~~~RI~kRgR~~E 217 (378)
T PHA03136 190 PHGGNIVIMDLDECEHAERIIARGRPGE 217 (378)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcCCCcc
Confidence 5688999999999999999999965443
No 170
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1e-05 Score=71.13 Aligned_cols=125 Identities=18% Similarity=0.280 Sum_probs=73.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh--HHHHHHHHHcCChH-HH----------------HHHHHHH-cCC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLRAAVAAKTPL-GI----------------KAKEAMD-KGE 89 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~--d~l~r~~~~~~~~~-~~----------------~~~~~~~-~~~ 89 (195)
.+|+=|++.||||||||++|+.|++.-++.++++ -+++.+...+.... .. ++...-. .+.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g 545 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGG 545 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCC
Confidence 5566799999999999999999999888777766 35555444321100 00 1111110 001
Q ss_pred CCC--HHHHHHHHHHHHcCCCCCC-cEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcC
Q 029307 90 LVS--DDLVVGIIDEAMKKPSCQK-GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (195)
Q Consensus 90 ~~~--~~~~~~~l~~~l~~~~~~~-~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R 159 (195)
... .+.+...+...+......+ .+|+-..++...-...+. ....+|.+||+..|+......+.+-
T Consensus 546 ~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALl-----RPGRlD~iiyVplPD~~aR~~Ilk~ 613 (693)
T KOG0730|consen 546 SSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALL-----RPGRLDRIIYVPLPDLEARLEILKQ 613 (693)
T ss_pred CccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHc-----CCcccceeEeecCccHHHHHHHHHH
Confidence 111 2233444445555555444 556666665543333322 3356899999999998777776654
No 171
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.18 E-value=1.5e-06 Score=65.99 Aligned_cols=26 Identities=38% Similarity=0.700 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
+++|+|+||+||||||+++.|.+.+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 46799999999999999999999874
No 172
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.13 E-value=2.6e-06 Score=69.84 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=32.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l 66 (195)
.+++|+|+||+|||||++|..|+++++..+||.|.+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 356899999999999999999999999999988763
No 173
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.12 E-value=2.9e-05 Score=70.12 Aligned_cols=116 Identities=17% Similarity=0.157 Sum_probs=67.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCc-----eeehHHHHHHHHH-cCChHHHHHHHHHHcCCCCCH----HHHHHHH-
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLC-----HLATGDMLRAAVA-AKTPLGIKAKEAMDKGELVSD----DLVVGII- 100 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~-----~i~~d~l~r~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~l- 100 (195)
..+|++.|.||+||||+++.|++.+++. +++.+++ +..+. .... ..+..... .....++
T Consensus 215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~-rr~~~~~~~~---------~~~~~~~~~~e~~~~~~~~~ 284 (664)
T PTZ00322 215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAY-RRRLERRGGA---------VSSPTGAAEVEFRIAKAIAH 284 (664)
T ss_pred ceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchh-HhhhccCCCC---------cCCCCCHHHHHHHHHHHHHH
Confidence 3489999999999999999999988544 4455343 33222 1100 00000000 1111111
Q ss_pred --HHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCC----CcCEEEEEEcCHHHHHHHHhcCC
Q 029307 101 --DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGK----KVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 101 --~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~----~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
...+.. .+.+.|+|+.+.+...+..+.+.+.+.+. .+ +.|..-++...+.++...|.
T Consensus 285 d~~~~v~~--~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~v-ifle~vc~~~~~i~~ni~r~ 347 (664)
T PTZ00322 285 DMTTFICK--TDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRV-VFVEVVNNNSETIRRNVLRA 347 (664)
T ss_pred HHHHHHhc--CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcE-EEEEEeCCCHHHHHHHHHHH
Confidence 222222 25689999999998888887777776553 22 44445566666666666554
No 174
>PLN02772 guanylate kinase
Probab=98.10 E-value=1.9e-05 Score=66.42 Aligned_cols=26 Identities=35% Similarity=0.797 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
..++|+|+||+||||+|+.+.|.+.+
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhc
Confidence 44589999999999999999998865
No 175
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=98.07 E-value=6.4e-06 Score=64.11 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=33.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCce-eehHHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCH-LATGDMLRAAVA 72 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~-i~~d~l~r~~~~ 72 (195)
|+|+|+|.|||||||+++.+.+. |.++ +++++.+++.+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~-g~~~~~~~~d~ik~~l~ 40 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN-YNAVKYQLADPIKEILA 40 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc-CCcEEEehhHHHHHHHH
Confidence 58999999999999999999775 5555 999888887764
No 176
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.06 E-value=7.5e-06 Score=68.12 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=25.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~ 58 (195)
.+.++++|.|||||||||+++.|++.++.
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34578999999999999999999998854
No 177
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.06 E-value=2.6e-05 Score=59.07 Aligned_cols=37 Identities=11% Similarity=0.148 Sum_probs=29.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV 71 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~ 71 (195)
+|.|.|..|||++++++.|++++|+.+++- +++.+..
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a 37 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAA 37 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHH
Confidence 689999999999999999999999999999 7776544
No 178
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=4.7e-05 Score=62.17 Aligned_cols=25 Identities=28% Similarity=0.667 Sum_probs=23.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCC
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCL 58 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~ 58 (195)
+|++.||||.|||++|+.|++++.+
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhhee
Confidence 6899999999999999999999954
No 179
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=98.05 E-value=1e-05 Score=58.24 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=30.6
Q ss_pred HHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 20 ~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
.+.++....-+.+.+|+|.|+.||||||+++.+++.+|+.
T Consensus 10 ~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 10 KFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred HHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3444433223456799999999999999999999999863
No 180
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.03 E-value=1.9e-05 Score=70.35 Aligned_cols=35 Identities=34% Similarity=0.561 Sum_probs=31.2
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
.++.++.+++||||.||||+|+.++++-|+.++.+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence 45556899999999999999999999999998876
No 181
>PF13173 AAA_14: AAA domain
Probab=98.03 E-value=0.00011 Score=52.46 Aligned_cols=98 Identities=18% Similarity=0.210 Sum_probs=57.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhC----CceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYC----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~----~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 108 (195)
++++|.|+.|+||||+++.+++.+. +.+++.++.--.... . .+ +.+.+......
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~--------------~----~~--~~~~~~~~~~~-- 60 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA--------------D----PD--LLEYFLELIKP-- 60 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh--------------h----hh--hHHHHHHhhcc--
Confidence 5899999999999999999998764 777777553221100 0 00 12222222211
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHH
Q 029307 109 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEER 155 (195)
Q Consensus 109 ~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~R 155 (195)
....+++|...........+...... .++.-|++..+......+
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~---~~~~~ii~tgS~~~~l~~ 104 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDN---GPNIKIILTGSSSSLLSK 104 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHh---ccCceEEEEccchHHHhh
Confidence 23468889776555544444444432 245677777776655543
No 182
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=0.00011 Score=62.58 Aligned_cols=110 Identities=23% Similarity=0.361 Sum_probs=59.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh----C--CceeehHHHHHHHHHcCChHHHHHHHHHHc-CC-CCCHHHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY----C--LCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GE-LVSDDLVVGIIDE 102 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~----~--~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~ 102 (195)
++.+|+|+|++||||||++..|+..+ | +.+++. |.+|.... ..+..+... +. ........ .+..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~-Dt~R~aA~------eQLk~yAe~lgvp~~~~~~~~-~l~~ 293 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT-DNYRIAAI------EQLKRYADTMGMPFYPVKDIK-KFKE 293 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc-cchhhhHH------HHHHHHHHhcCCCeeehHHHH-HHHH
Confidence 35689999999999999999999765 2 334555 44443221 112222111 11 11111122 2333
Q ss_pred HHcCCCCCCcEEEe--CCC-CCHHHHHHHHHHHhhcCC--CcCEEEEEEcCH
Q 029307 103 AMKKPSCQKGFILD--GFP-RTEVQAQKLDEMLEKQGK--KVDKVLNFAIDD 149 (195)
Q Consensus 103 ~l~~~~~~~~~iid--~~~-~~~~~~~~l~~~l~~~~~--~~d~vi~l~~~~ 149 (195)
.+.. .....++|| |++ +...+...|.+.+...+. ....++.|++..
T Consensus 294 ~l~~-~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 294 TLAR-DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred HHHh-CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 3332 223569999 553 566777777776654322 223455556554
No 183
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=98.02 E-value=2.1e-06 Score=47.39 Aligned_cols=32 Identities=47% Similarity=0.743 Sum_probs=27.0
Q ss_pred CCCCCCCCceeeCCCCCCCCCCCCCCCCCccc
Q 029307 159 RWIHPSSGRTYHTKFAPPKVPGVDDVSRCNWR 190 (195)
Q Consensus 159 R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 190 (195)
|+.++.+|+.||..|.||.++++||.||+.|-
T Consensus 1 Rr~C~~Cg~~Yh~~~~pP~~~~~Cd~cg~~L~ 32 (36)
T PF05191_consen 1 RRICPKCGRIYHIEFNPPKVEGVCDNCGGELV 32 (36)
T ss_dssp EEEETTTTEEEETTTB--SSTTBCTTTTEBEB
T ss_pred CcCcCCCCCccccccCCCCCCCccCCCCCeeE
Confidence 56788999999999999999999999999663
No 184
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.01 E-value=1.9e-05 Score=61.60 Aligned_cols=56 Identities=25% Similarity=0.405 Sum_probs=33.7
Q ss_pred ccccCCCC-CHHHHHHHHHHhcccC---CCCCcEEEEEcCCCCChhHHHHHHHHHhCCce
Q 029307 5 SAANLEDV-PSVDLMTELLRRMKCA---SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (195)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~ 60 (195)
++..|++. =++++.....--..+. +.....+++.||||+||||+|..++++++..+
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~ 78 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNF 78 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--E
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCe
Confidence 34445555 4556655533222211 22234799999999999999999999997654
No 185
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.01 E-value=5.6e-05 Score=60.60 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
....++|.||||+||||+|+.+++.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999865
No 186
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=98.01 E-value=4.2e-06 Score=62.17 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=26.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA 72 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~ 72 (195)
.|+|+|++|+||||+++.|+++ |+.++ .+..+..+.
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~~ 36 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREIIE 36 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHHHH
Confidence 4899999999999999999998 98877 466666654
No 187
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.99 E-value=0.00039 Score=57.36 Aligned_cols=40 Identities=30% Similarity=0.485 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++...+.+... .+..+.++|.||||+||||+++.+++.+
T Consensus 21 ~~~~~~L~~~~~--~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 21 DEVVERLSRAVD--SPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHHHHHHHHHHh--CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344444444332 2333468999999999999999999977
No 188
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.98 E-value=1.1e-05 Score=63.48 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=42.3
Q ss_pred HHHHHHHhcccC-----CCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHH
Q 029307 17 LMTELLRRMKCA-----SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA 72 (195)
Q Consensus 17 ~~~~~~~~~~~~-----~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~ 72 (195)
..++.+++|.+- .+.|.+|+|-|.||.||||+|..|+..+|+.++=..|.+|+.+.
T Consensus 69 ~~~e~a~rY~lwR~ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR 129 (299)
T COG2074 69 GDPEVAKRYLLWRRIRKMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLR 129 (299)
T ss_pred cCHHHHHHHHHHHHHhccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHH
Confidence 334455555433 46678999999999999999999999999875544477777765
No 189
>PLN02840 tRNA dimethylallyltransferase
Probab=97.97 E-value=8.4e-06 Score=69.19 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=31.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGD 65 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~ 65 (195)
.++++|+|.||+||||||++..|+++++..+|+.|.
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 345689999999999999999999999988887754
No 190
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.94 E-value=7e-06 Score=61.72 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhC--CceeehHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYC--LCHLATGD 65 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~--~~~i~~d~ 65 (195)
++|+|+|+|||||||+|..++..++ ..|+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 5799999999999999999999886 45666543
No 191
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.93 E-value=0.00026 Score=58.04 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=25.8
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCce
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~ 60 (195)
+..|..+++.|+||+||||+++.+++.++..+
T Consensus 40 ~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 40 GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence 34456777799999999999999999876433
No 192
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.92 E-value=1.1e-05 Score=59.58 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
..+.|+|+|+||+||||++.++++.+.-.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 35789999999999999999999887433
No 193
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00026 Score=61.48 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=25.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCC
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~ 58 (195)
+.-+..++|+||||+||||+|+.+++.++.
T Consensus 33 ~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 33 NSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 344456899999999999999999998865
No 194
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.91 E-value=2.5e-05 Score=55.41 Aligned_cols=84 Identities=17% Similarity=0.212 Sum_probs=44.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh--------CCc--eeehHHHHHHHHHcCChHHHHHHHHHHcCCC--CCHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY--------CLC--HLATGDMLRAAVAAKTPLGIKAKEAMDKGEL--VSDDLVVG 98 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~--------~~~--~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 98 (195)
...+++|.|++|+|||++++.+++.+ +.. +++..... ....+...+.+.+..... .+...+..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-----TPRDFAQEILEALGLPLKSRQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-----SHHHHHHHHHHHHT-SSSSTS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-----CHHHHHHHHHHHhCccccccCCHHHHHH
Confidence 34589999999999999999999976 333 33332211 011122333333333222 23444556
Q ss_pred HHHHHHcCCCCCCcEEEeCCCC
Q 029307 99 IIDEAMKKPSCQKGFILDGFPR 120 (195)
Q Consensus 99 ~l~~~l~~~~~~~~~iid~~~~ 120 (195)
.+...+..... ..+|+|....
T Consensus 78 ~~~~~l~~~~~-~~lviDe~~~ 98 (131)
T PF13401_consen 78 LLIDALDRRRV-VLLVIDEADH 98 (131)
T ss_dssp HHHHHHHHCTE-EEEEEETTHH
T ss_pred HHHHHHHhcCC-eEEEEeChHh
Confidence 66666665432 4688997643
No 195
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.91 E-value=1.1e-05 Score=56.99 Aligned_cols=27 Identities=37% Similarity=0.644 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCL 58 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~ 58 (195)
+..++|.|||||||||+++.|+..++.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 457999999999999999999998854
No 196
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.90 E-value=2.7e-05 Score=60.08 Aligned_cols=83 Identities=16% Similarity=0.284 Sum_probs=49.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHH-HHcCChHHHH-------------HHHHHHcCCCCCHHHHHHH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA-VAAKTPLGIK-------------AKEAMDKGELVSDDLVVGI 99 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~-~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 99 (195)
+++|.||+|+|||.+|-.|++++|.++|+.|.+..-. +.-++ |+- ....+..| .++.+.....
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~S--grp~~~el~~~~RiyL~~r~l~~G-~i~a~ea~~~ 79 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGS--GRPTPSELKGTRRIYLDDRPLSDG-IINAEEAHER 79 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTT--T---SGGGTT-EEEES----GGG--S--HHHHHHH
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceeccccccccc--CCCCHHHHcccceeeeccccccCC-CcCHHHHHHH
Confidence 7899999999999999999999999999997543211 11111 110 11222233 3555556677
Q ss_pred HHHHHcCCCCCCcEEEeCCC
Q 029307 100 IDEAMKKPSCQKGFILDGFP 119 (195)
Q Consensus 100 l~~~l~~~~~~~~~iid~~~ 119 (195)
+...+.......++|++|.-
T Consensus 80 Li~~v~~~~~~~~~IlEGGS 99 (233)
T PF01745_consen 80 LISEVNSYSAHGGLILEGGS 99 (233)
T ss_dssp HHHHHHTTTTSSEEEEEE--
T ss_pred HHHHHHhccccCceEEeCch
Confidence 77777777777799999873
No 197
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=97.89 E-value=0.00018 Score=56.51 Aligned_cols=115 Identities=12% Similarity=0.145 Sum_probs=70.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 108 (195)
.+.|.+|+|.|..||||..+.+.|.+.++-.++.+-.+- .+ ...+.--..+...-..+.
T Consensus 28 ~~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~-------~p--------------t~eE~~~p~lwRfw~~lP 86 (230)
T TIGR03707 28 TGARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALP-------KP--------------SDRERTQWYFQRYVQHLP 86 (230)
T ss_pred cCCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCC-------CC--------------CHHHHcChHHHHHHHhCC
Confidence 456899999999999999999999999964444331100 00 000000111122222221
Q ss_pred C-CCcEEEeC-------------------CCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCC
Q 029307 109 C-QKGFILDG-------------------FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSS 165 (195)
Q Consensus 109 ~-~~~~iid~-------------------~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~ 165 (195)
. +...|+++ +.....+...|++.|...|..+ +-+||.++.++..+|+.+|..++.+
T Consensus 87 ~~G~i~IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~I-lKfflhIsk~eQ~kRl~~r~~~p~k 162 (230)
T TIGR03707 87 AAGEIVLFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHL-FKYWLSVSREEQLRRFKARIDDPLK 162 (230)
T ss_pred CCCeEEEEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEE-EEEEEECCHHHHHHHHHHHhcCCcc
Confidence 1 22233332 1122334556677788788777 9999999999999999999877655
No 198
>PRK12377 putative replication protein; Provisional
Probab=97.89 E-value=0.00025 Score=56.50 Aligned_cols=104 Identities=13% Similarity=0.249 Sum_probs=59.4
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh---C--CceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 107 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~---~--~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 107 (195)
.-++|.|+||+|||+++..+++.+ | +.+++..+++..... ....+. .... .+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~-----------~~~~~~-----~~~~----~l~~l 161 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHE-----------SYDNGQ-----SGEK----FLQEL 161 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHH-----------HHhccc-----hHHH----HHHHh
Confidence 469999999999999999999987 3 456677666544321 111110 0111 12222
Q ss_pred CCCCcEEEeCC---CCCHHHHHHHHHHHhhcC--CCcCEEEEEEcCHHHHHHHHh
Q 029307 108 SCQKGFILDGF---PRTEVQAQKLDEMLEKQG--KKVDKVLNFAIDDAVLEERIT 157 (195)
Q Consensus 108 ~~~~~~iid~~---~~~~~~~~~l~~~l~~~~--~~~d~vi~l~~~~e~~~~Rl~ 157 (195)
......|||.+ ..+......|.+++...- ..| .+|--..+.+.+.+++.
T Consensus 162 ~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~p-tiitSNl~~~~l~~~~~ 215 (248)
T PRK12377 162 CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRS-VGMLTNLNHEAMSTLLG 215 (248)
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCC-EEEEcCCCHHHHHHHhh
Confidence 33456888876 234444555655555332 234 56655777766555433
No 199
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00018 Score=62.22 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=25.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
+-+..++|+||+|+||||+|+.|++.++..
T Consensus 38 ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 38 KIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 334568999999999999999999998764
No 200
>PLN02748 tRNA dimethylallyltransferase
Probab=97.88 E-value=1.4e-05 Score=68.90 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=32.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGD 65 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~ 65 (195)
.++++|+|+||+|||||+++..|+++++..+|+.|.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 456699999999999999999999999999999964
No 201
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.87 E-value=1.2e-05 Score=65.22 Aligned_cols=32 Identities=13% Similarity=0.268 Sum_probs=29.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGD 65 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~ 65 (195)
+|+|+||+|||||+++..|++.++..+||.|.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds 32 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDS 32 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence 48999999999999999999999999999866
No 202
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.0002 Score=63.89 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=26.3
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCC
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~ 58 (195)
++-+..++|+|++|+||||+++.|++.+++
T Consensus 35 gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 35 QRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444567899999999999999999999976
No 203
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=8.5e-05 Score=65.21 Aligned_cols=113 Identities=15% Similarity=0.269 Sum_probs=67.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeeh--HHHHHHHHHcCChHHHHHHHHHHcCC--------------------
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLRAAVAAKTPLGIKAKEAMDKGE-------------------- 89 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~--d~l~r~~~~~~~~~~~~~~~~~~~~~-------------------- 89 (195)
|.=|+++||||||||-+|++.+++-|+.+|++ -+|+-+.+..- -+.+++.++...
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGES---ErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~ 621 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGES---ERAVRQVFQRARASAPCVIFFDEIDALVPRRS 621 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhH---HHHHHHHHHHhhcCCCeEEEecchhhcCcccC
Confidence 34599999999999999999999999888887 35665554321 122233222211
Q ss_pred ---CCCHHHHHHHHHHHHcCCCCC-CcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHH
Q 029307 90 ---LVSDDLVVGIIDEAMKKPSCQ-KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL 152 (195)
Q Consensus 90 ---~~~~~~~~~~l~~~l~~~~~~-~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~ 152 (195)
.-....+.+.+.-.+...... ..|||-.+++.-.....+ -....+|-.+|+..|...-
T Consensus 622 ~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAi-----LRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 622 DEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAI-----LRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhh-----cCCCccCceeeecCCCHHH
Confidence 001122333334445555333 367887776654333222 1346788999999987543
No 204
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.87 E-value=2.5e-05 Score=68.35 Aligned_cols=42 Identities=31% Similarity=0.486 Sum_probs=32.2
Q ss_pred HHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCCceee
Q 029307 21 LLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (195)
Q Consensus 21 ~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~ 62 (195)
|.+.......+..+.+|+||+||||||..+.|++++|+.+..
T Consensus 34 wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 34 WLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred HHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 444333234445689999999999999999999999986654
No 205
>CHL00181 cbbX CbbX; Provisional
Probab=97.86 E-value=0.0001 Score=60.05 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh---C------CceeehHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY---C------LCHLATGDMLRAA 70 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~---~------~~~i~~d~l~r~~ 70 (195)
.+..++|.|+||+||||+|+.+++.+ | +..++.++++...
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~ 106 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQY 106 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHH
Confidence 34569999999999999999998865 1 3455555655444
No 206
>PRK09087 hypothetical protein; Validated
Probab=97.86 E-value=0.00018 Score=56.55 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=30.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l 66 (195)
.+.++|.|++|||||++++.+++..+..+++.+++
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~ 78 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEI 78 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHc
Confidence 34689999999999999999999999999998644
No 207
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=97.85 E-value=4.1e-05 Score=59.45 Aligned_cols=119 Identities=14% Similarity=0.157 Sum_probs=61.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhC------CceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYC------LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK- 105 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~------~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~- 105 (195)
++|+|+|-|+|||||.|..|.+.+. ..+|.-|+- -.+..+...+.. -.+..+...+....+
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des--lg~~~ns~y~~s----------~~EK~lRg~L~S~v~R 69 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES--LGIEKNSNYGDS----------QAEKALRGKLRSAVDR 69 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh--cCCCCccccccc----------HHHHHHHHHHHHHHHh
Confidence 3799999999999999999999872 112222111 111111111111 111222222222222
Q ss_pred CCCCCCcEEEeCCC--CCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 029307 106 KPSCQKGFILDGFP--RTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSG 166 (195)
Q Consensus 106 ~~~~~~~~iid~~~--~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g 166 (195)
.+..+..+|+|..+ .....-.++... ..+... .|||..+|++.+.+--.+|..-.+.|
T Consensus 70 ~Lsk~~iVI~DslNyIKGfRYeLyC~ak--~~~tt~-Cvv~t~vp~e~~r~~Ns~~~~p~e~g 129 (281)
T KOG3062|consen 70 SLSKGDIVIVDSLNYIKGFRYELYCEAK--AARTTY-CVVHTAVPQELCREWNSEREDPGEDG 129 (281)
T ss_pred hcccCcEEEEecccccccceeeeeeehh--ccceeE-EEEEecCCHHHHHHhcccCCCCCCCC
Confidence 22335578888543 222221111111 111222 58999999999999888876543444
No 208
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=0.0003 Score=59.52 Aligned_cols=26 Identities=38% Similarity=0.625 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.|.+|+++|+.|+||||.+..|+..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999866
No 209
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.84 E-value=0.00016 Score=53.38 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=63.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh--CCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY--CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 109 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~--~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 109 (195)
|.+.++.|+.||||||+...+-..+ ++.++|.|++..+. ....+....+. . .......+...+..
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i-~p~~p~~~~i~----A-----~r~ai~~i~~~I~~--- 68 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQI-SPDNPTSAAIQ----A-----ARVAIDRIARLIDL--- 68 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhc-CCCCchHHHHH----H-----HHHHHHHHHHHHHc---
Confidence 4578889999999999887765555 57899996654333 22111111110 0 01122233333333
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 110 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 110 ~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
+.+|..+-........+.++ .....|-.+.+.+++--+.|..++|+..|=..
T Consensus 69 ~~~F~~ETtLS~~s~~~~ik-~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~ 120 (187)
T COG4185 69 GRPFIAETTLSGPSILELIK-TAKAAGFYIVLNYIVIDSVELAVERVKLRVAK 120 (187)
T ss_pred CCCcceEEeeccchHHHHHH-HHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhc
Confidence 45677775544444443333 34444444533344444567888888887543
No 210
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.0004 Score=58.39 Aligned_cols=44 Identities=16% Similarity=0.282 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCC
Q 029307 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (195)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~ 58 (195)
..++...+.+.+. .++-+..++|+||+|+||||+++.+++.+++
T Consensus 21 q~~~~~~l~~~~~-~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 21 QKHIVTAISNGLS-LGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred hHHHHHHHHHHHH-cCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 3444444444433 2344556899999999999999999998864
No 211
>PRK08116 hypothetical protein; Validated
Probab=97.82 E-value=0.00068 Score=54.64 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=29.9
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh---C--CceeehHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAA 70 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~---~--~~~i~~d~l~r~~ 70 (195)
.-++|.|++|+|||+++..+++.+ + +.+++..+++...
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i 157 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI 157 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 358999999999999999999976 2 4567776765543
No 212
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00025 Score=61.67 Aligned_cols=31 Identities=32% Similarity=0.377 Sum_probs=26.4
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
++-+.-++|+||+|+||||+|+.+++.+++.
T Consensus 32 ~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 32 NKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 4445579999999999999999999988653
No 213
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00014 Score=63.91 Aligned_cols=32 Identities=31% Similarity=0.547 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
|.=|+|.||||||||.+|+.++.+++++++++
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel~vPf~~i 254 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGELGVPFLSI 254 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhcCCceEee
Confidence 34599999999999999999999999988876
No 214
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.81 E-value=1.9e-05 Score=66.89 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG 64 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d 64 (195)
.|..|+|.||||+|||++++.|++.++.+++.++
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd 79 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 79 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence 3568999999999999999999999998777664
No 215
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.79 E-value=4.1e-05 Score=63.90 Aligned_cols=52 Identities=15% Similarity=0.214 Sum_probs=38.2
Q ss_pred HHHHHHhcccC--CCCCcEEEEEcCCCCChhHHHHHHHHHhCCce--eehHHHHHH
Q 029307 18 MTELLRRMKCA--SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH--LATGDMLRA 69 (195)
Q Consensus 18 ~~~~~~~~~~~--~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~--i~~d~l~r~ 69 (195)
.-+..+-|... -+.|.+++|.||||+|||.+|+.+++++|+.. ++..+++.+
T Consensus 132 ~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 132 AVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred HHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 34555555532 36677899999999999999999999998664 455555543
No 216
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=5e-05 Score=67.65 Aligned_cols=37 Identities=32% Similarity=0.514 Sum_probs=32.0
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhC--CceeehHH
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC--LCHLATGD 65 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~--~~~i~~d~ 65 (195)
...++|+++.||||.|||++++.++..+| ++.+|++-
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG 473 (906)
T KOG2004|consen 435 SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGG 473 (906)
T ss_pred cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccc
Confidence 46778999999999999999999999997 66677643
No 217
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.00039 Score=63.03 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=26.2
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
++-+..++|+|++|+||||+++.|++.+++.
T Consensus 35 gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 35 GRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 3345567899999999999999999999764
No 218
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.78 E-value=2.4e-05 Score=56.41 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=24.9
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCceee
Q 029307 35 LILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (195)
Q Consensus 35 I~i~G~pGsGKSTla~~L~~~~~~~~i~ 62 (195)
|+|+|+||+|||++++.+++.++..++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~ 29 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIR 29 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEE
Confidence 7899999999999999999999866543
No 219
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.0006 Score=59.80 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
..++..+...+. .+.-+..++|+||+|+||||+|+.|++.+++.
T Consensus 22 ~~v~~~L~~~~~-~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 22 APVVRALSNALD-QQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred HHHHHHHHHHHH-hCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 334444444333 23445568999999999999999999999764
No 220
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.00027 Score=65.10 Aligned_cols=31 Identities=19% Similarity=0.432 Sum_probs=26.3
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
++-+.-++|.|++|+||||+++.|++.+++.
T Consensus 34 ~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 34 GRINHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 3444568999999999999999999999764
No 221
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.75 E-value=8.2e-05 Score=52.89 Aligned_cols=25 Identities=48% Similarity=0.810 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+..++|+|+||+||||+++.+++.+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999987
No 222
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.00048 Score=60.28 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=27.3
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCce
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~ 60 (195)
++-+..++|+||+|+||||+|+.+++.+++..
T Consensus 40 ~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 40 DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 44456899999999999999999999997643
No 223
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.74 E-value=2.9e-05 Score=65.88 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeehH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG 64 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d 64 (195)
|..|+|+||||+|||++|+.|++.++.+++.++
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD 82 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeec
Confidence 578999999999999999999999988777663
No 224
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=97.73 E-value=0.00045 Score=55.38 Aligned_cols=114 Identities=14% Similarity=0.134 Sum_probs=69.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS- 108 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~- 108 (195)
+.|.+|+|.|..||||..+.+.|.+.++-.++.+-.+ ..+ ...+..-..+......+.
T Consensus 54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~-------~~P--------------t~eE~~~p~lWRfw~~lP~ 112 (264)
T TIGR03709 54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSF-------KAP--------------SAEELDHDFLWRIHKALPE 112 (264)
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeC-------CCC--------------CHHHHcCchHHHHHHhCCC
Confidence 4588999999999999999999999886444433111 000 000000111111111121
Q ss_pred CCCcEEEeCC-------------------CCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCC
Q 029307 109 CQKGFILDGF-------------------PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSS 165 (195)
Q Consensus 109 ~~~~~iid~~-------------------~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~ 165 (195)
.+...|+++. .....+...|+..|...|..+ +-+||.++.++..+|+.+|..++.+
T Consensus 113 ~G~i~IF~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~I-iKffLhIsk~eQ~kRl~~r~~~p~k 187 (264)
T TIGR03709 113 RGEIGIFNRSHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTI-LKFFLHISKEEQKKRFLARLDDPTK 187 (264)
T ss_pred CCeEEEEcCccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEE-EEEEEeCCHHHHHHHHHHHhcCCcc
Confidence 1223333321 112234455667777777777 9999999999999999999876654
No 225
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00055 Score=61.19 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=26.9
Q ss_pred CCCCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 28 ~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
.++-+..++|+|++|+||||+++.|++.+++.
T Consensus 34 ~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 34 QQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34445678999999999999999999998763
No 226
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.71 E-value=0.00056 Score=59.44 Aligned_cols=113 Identities=14% Similarity=0.078 Sum_probs=70.1
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCC---ceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCL---CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 105 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~---~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 105 (195)
.+.|++|+|.|..||||+++.+.|.+.++- .+.+...--.++ ..-..+.....
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~eE------------------------~~~~flwRfw~ 92 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDEE------------------------RERPPMWRFWR 92 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHHH------------------------hcCcHHHHHHH
Confidence 467889999999999999999999998853 333331100000 00111111111
Q ss_pred CCC-CCCcEEEeCC-------------------CCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCC
Q 029307 106 KPS-CQKGFILDGF-------------------PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSS 165 (195)
Q Consensus 106 ~~~-~~~~~iid~~-------------------~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~ 165 (195)
.+. .+...|+|.. ..-..+...|++.|...|..+ +-+||.++.++..+|+.+|..++..
T Consensus 93 ~lP~~G~I~IFdRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~I-lKffLhIsk~EQ~kRl~~r~~~P~k 171 (493)
T TIGR03708 93 RLPPKGKIGIFFGSWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALI-LKFWLHLSKKQQKERLKKLEKDPET 171 (493)
T ss_pred hCCCCCeEEEEcCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEE-EEEEEECCHHHHHHHHHHHhcCCcc
Confidence 111 1223333321 112234456677777778877 9999999999999999999877655
Q ss_pred C
Q 029307 166 G 166 (195)
Q Consensus 166 g 166 (195)
.
T Consensus 172 ~ 172 (493)
T TIGR03708 172 R 172 (493)
T ss_pred c
Confidence 3
No 227
>PLN02796 D-glycerate 3-kinase
Probab=97.71 E-value=3.2e-05 Score=64.09 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=30.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhC-----CceeehHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDML 67 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~-----~~~i~~d~l~ 67 (195)
++|.+|+|.|++||||||+++.|...+. ...+++|++.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 4678999999999999999999998874 3456665543
No 228
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00082 Score=60.20 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=26.7
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
++.+..++|+||+|+||||+|+.|++.+++.
T Consensus 34 grl~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 34 GRLHHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4445678999999999999999999999764
No 229
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=97.68 E-value=0.00014 Score=53.83 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
+..|+|.||+|+||-|+.......+.
T Consensus 5 G~lI~vvGPSGAGKDtl~~~ar~~l~ 30 (192)
T COG3709 5 GRLIAVVGPSGAGKDTLLDAARARLA 30 (192)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHhc
Confidence 56899999999999999999988883
No 230
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.68 E-value=5.4e-05 Score=64.19 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=30.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhC-----CceeehHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDML 67 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~-----~~~i~~d~l~ 67 (195)
++|.+|.|.|++||||||+++.|...+. ...|+.|++.
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 4678999999999999999999977652 4566776654
No 231
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=5.7e-05 Score=61.62 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=33.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l 66 (195)
.+++|+|+||.+||||-+|-.|++++|.++||+|..
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence 356899999999999999999999999999999764
No 232
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00029 Score=62.93 Aligned_cols=115 Identities=21% Similarity=0.337 Sum_probs=67.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeeh--HHHHHHHHHcCChHHHHHHHHHHcC-----------------------
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLRAAVAAKTPLGIKAKEAMDKG----------------------- 88 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~--d~l~r~~~~~~~~~~~~~~~~~~~~----------------------- 88 (195)
=|++.||||||||.++.+++...++.+|++ -+++.+.+.+..+. +++.+...
T Consensus 703 giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~---vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD 779 (952)
T KOG0735|consen 703 GILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQN---VRDLFERAQSAKPCILFFDEFDSIAPKRGHD 779 (952)
T ss_pred ceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHH---HHHHHHHhhccCCeEEEeccccccCcccCCC
Confidence 499999999999999999999999999988 37777777543222 22222111
Q ss_pred -CCCCHHHHHHHHHHHHcCCCCCCcE-EEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHh
Q 029307 89 -ELVSDDLVVGIIDEAMKKPSCQKGF-ILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 157 (195)
Q Consensus 89 -~~~~~~~~~~~l~~~l~~~~~~~~~-iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~ 157 (195)
--+.+..+.++ ...+...+.-.|+ |+-..-+.... ..++ -+....|..||+..|.+.-+=++.
T Consensus 780 sTGVTDRVVNQl-LTelDG~Egl~GV~i~aaTsRpdli----DpAL-LRpGRlD~~v~C~~P~~~eRl~il 844 (952)
T KOG0735|consen 780 STGVTDRVVNQL-LTELDGAEGLDGVYILAATSRPDLI----DPAL-LRPGRLDKLVYCPLPDEPERLEIL 844 (952)
T ss_pred CCCchHHHHHHH-HHhhccccccceEEEEEecCCcccc----CHhh-cCCCccceeeeCCCCCcHHHHHHH
Confidence 01233333433 3344444433343 44444333211 1122 134678899999998865544444
No 233
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.66 E-value=5.3e-05 Score=60.84 Aligned_cols=44 Identities=23% Similarity=0.257 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 029307 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (195)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i 61 (195)
..++...+..-.. ...-|+|.|+||+|||++|+.|++.+|.+++
T Consensus 7 ~~~l~~~~l~~l~----~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 7 VKRVTSRALRYLK----SGYPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred HHHHHHHHHHHHh----cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 3445444444333 1245889999999999999999998887655
No 234
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=97.65 E-value=0.0012 Score=49.62 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=67.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCC---ceeehHHHHHHHHHcCChHHHHHHHHHHcC-----------------CCCCH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCL---CHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----------------ELVSD 93 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~---~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 93 (195)
+|+|+|..+|||.|++..|.+.++. ..+.+.+-++++..... |..+...+..+ ..-.+
T Consensus 1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~~--gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp 78 (182)
T TIGR01223 1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEH--GLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADP 78 (182)
T ss_pred CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHHh--ChhHHHhcCCcccchhhhHHHHHHHHHHHhhCc
Confidence 5899999999999999999998874 25666555555543211 11111111111 11111
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHh
Q 029307 94 DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 157 (195)
Q Consensus 94 ~~~~~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~ 157 (195)
......+.. ... ...|||++. +.......|.+.+ +..+ +.|-+.++++++.+|--
T Consensus 79 ~~F~r~~~~---~~~-~~v~iIsD~-Rr~~dv~~f~~~~---g~~~-~~VRV~AseetR~~Rgw 133 (182)
T TIGR01223 79 GFFCRKIVE---GIS-QPIWLVSDT-RRVSDIQWFREAY---GAVT-QTVRVVALEQSRQQRGW 133 (182)
T ss_pred cHHHHHHHh---ccC-CCEEEEeCC-CcccHHHHHHHHc---CCce-EEEEEecCHHHHHHHHH
Confidence 222222222 111 346888876 5555666666654 2344 78999999999999873
No 235
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.64 E-value=4.8e-05 Score=54.02 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
+.+.+|++.|.-||||||+++.+++.+|..
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 456799999999999999999999999763
No 236
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.64 E-value=5.8e-05 Score=64.14 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=26.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceee
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~ 62 (195)
..|+|+|++||||||+++.|++++|...+.
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 479999999999999999999999876543
No 237
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.63 E-value=4.4e-05 Score=55.29 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
+|+|+||+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999999764
No 238
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.62 E-value=8.7e-05 Score=58.97 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
++..+|.|+|+||+||||+...|...|
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 456799999999999999999999877
No 239
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.00092 Score=59.46 Aligned_cols=31 Identities=19% Similarity=0.438 Sum_probs=26.3
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
++-+..++|+||+|+||||+++.|++.+++.
T Consensus 32 ~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 32 GRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 3445568999999999999999999998764
No 240
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.00058 Score=62.97 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=25.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
+-+..++|+|++|+||||+++.|++.+++.
T Consensus 36 rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 36 RLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 445567999999999999999999999764
No 241
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.60 E-value=7.3e-05 Score=56.09 Aligned_cols=23 Identities=35% Similarity=0.677 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.|+|+|+||+||||+.+.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 242
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.0013 Score=57.73 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=25.6
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCC
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~ 58 (195)
++-+..++|+||||+||||+++.|++.+++
T Consensus 33 ~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 33 GRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 444567899999999999999999998864
No 243
>PRK09169 hypothetical protein; Validated
Probab=97.59 E-value=0.00073 Score=66.72 Aligned_cols=107 Identities=9% Similarity=0.004 Sum_probs=71.5
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
..|+|+|.+|+||||+.+.|+.++++.+++.|..+.+.. ++.+.+++...+ +..+.-...+...+. ..
T Consensus 2111 ~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~------GrkI~rIFa~eG-~FRe~Eaa~V~Dllr-----~~ 2178 (2316)
T PRK09169 2111 QARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKI------GKKIARIQALRG-LSPEQAAARVRDALR-----WE 2178 (2316)
T ss_pred cccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHh------CCCHHHHHHhcC-chHHHHHHHHHHHhc-----CC
Confidence 369999999999999999999999999999987776654 345555554443 444444455554442 22
Q ss_pred EEEe-C-CC-CCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcC
Q 029307 113 FILD-G-FP-RTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (195)
Q Consensus 113 ~iid-~-~~-~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R 159 (195)
.|+. | +. ........|.+ -.++||+..+.+++.+|+...
T Consensus 2179 vVLSTGGGav~~~enr~~L~~--------~GlvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169 2179 VVLPAEGFGAAVEQARQALGA--------KGLRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred eEEeCCCCcccCHHHHHHHHH--------CCEEEEEECCHHHHHHHhccC
Confidence 3444 2 22 22233333322 237999999999999999754
No 244
>PRK06526 transposase; Provisional
Probab=97.59 E-value=0.001 Score=53.24 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+..++|+||||+|||+++..|+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 4579999999999999999987764
No 245
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.58 E-value=0.00012 Score=60.62 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+++.+|.|+|+|||||||++..|...+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999987766
No 246
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.56 E-value=5.1e-05 Score=60.11 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.8
Q ss_pred EEcCCCCChhHHHHHHHHHhC
Q 029307 37 LVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 37 i~G~pGsGKSTla~~L~~~~~ 57 (195)
|+||+||||||+++.+.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999884
No 247
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.56 E-value=7.9e-05 Score=63.19 Aligned_cols=39 Identities=26% Similarity=0.560 Sum_probs=30.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCcee--ehHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLR 68 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i--~~d~l~r 68 (195)
..|+-|+|.||||+|||++|+.+++.++..++ +..++..
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 44567999999999999999999999976544 4444443
No 248
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.56 E-value=7e-05 Score=61.69 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=27.4
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
..|+|.|+||+||||+++.|++.+|++++.+
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV 95 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRV 95 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEE
Confidence 4599999999999999999999999876643
No 249
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00015 Score=58.62 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=25.2
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
-.++.+|.|+|+||+||||+...|..+|
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 3566799999999999999999999988
No 250
>PRK10646 ADP-binding protein; Provisional
Probab=97.56 E-value=0.00018 Score=52.96 Aligned_cols=40 Identities=25% Similarity=0.171 Sum_probs=30.9
Q ss_pred HHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCC
Q 029307 19 TELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (195)
Q Consensus 19 ~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~ 58 (195)
..+.++....-+.+.+|++.|.-|+||||+++.|++.+|+
T Consensus 15 ~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 15 LDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred HHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3444444333345669999999999999999999999986
No 251
>PRK04195 replication factor C large subunit; Provisional
Probab=97.56 E-value=0.00014 Score=63.30 Aligned_cols=33 Identities=33% Similarity=0.652 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
.+..++|.||||+||||+++.|++.+++.++..
T Consensus 38 ~~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 38 PKKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 366899999999999999999999998776655
No 252
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.55 E-value=0.00029 Score=61.53 Aligned_cols=28 Identities=32% Similarity=0.647 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCC
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~ 58 (195)
.|+-|+|.||||+|||++++.+++.++.
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 4567999999999999999999998753
No 253
>PRK08181 transposase; Validated
Probab=97.54 E-value=0.0014 Score=52.77 Aligned_cols=39 Identities=28% Similarity=0.466 Sum_probs=30.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh---C--CceeehHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAA 70 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~---~--~~~i~~d~l~r~~ 70 (195)
...++|+|++|+|||.++..++.+. | +.+++..+++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 4569999999999999999998654 3 5667776766554
No 254
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.54 E-value=0.00043 Score=58.08 Aligned_cols=31 Identities=35% Similarity=0.522 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
.--++.||||+||||+|+.|++..+..+...
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~ 79 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEAL 79 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEe
Confidence 3578999999999999999999998665544
No 255
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.54 E-value=0.0001 Score=63.04 Aligned_cols=33 Identities=36% Similarity=0.399 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
....++|+||||+||||+++.+++..+..++..
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l 67 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEAL 67 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 345788999999999999999999887655543
No 256
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.54 E-value=0.0022 Score=53.36 Aligned_cols=44 Identities=18% Similarity=0.348 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCC
Q 029307 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (195)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~ 58 (195)
...++..+.+... .+..+..++|.|+||+||||+++.+++.+..
T Consensus 19 ~~~~~~~l~~~~~-~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 19 QEHIVQTLKNAIK-NGRIAHAYLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred cHHHHHHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3444555544333 2344567899999999999999999998754
No 257
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.54 E-value=0.00015 Score=63.05 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
+.|+-|+|.||||+|||.+|+.++..++.+.+.+
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l 290 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL 290 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 4456799999999999999999999999876654
No 258
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.54 E-value=0.0008 Score=49.65 Aligned_cols=129 Identities=15% Similarity=0.061 Sum_probs=72.3
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhC--CceeehHHHHHHHHHcCChHHHH--HHH-HHHcCC---CCCHHHH----
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVAAKTPLGIK--AKE-AMDKGE---LVSDDLV---- 96 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~--~~~i~~d~l~r~~~~~~~~~~~~--~~~-~~~~~~---~~~~~~~---- 96 (195)
..+.+||++-|.+-||||++|..+..-+. +-++-+|-++...+......+.. -.. ....+. .+...-+
T Consensus 20 ~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~~ 99 (205)
T COG3896 20 MPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILELA 99 (205)
T ss_pred CCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHHH
Confidence 44567999999999999999999988774 44555633333222221111111 000 000010 0111111
Q ss_pred HHHHHHHHc-CCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 97 VGIIDEAMK-KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 97 ~~~l~~~l~-~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
..-....+. ..+.+..++.|.+..+..........+.. ..-.+|-+.+|.|++.+|-..|.
T Consensus 100 ~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g---~~v~~VGV~~p~E~~~~Re~rr~ 161 (205)
T COG3896 100 MHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEG---CRVWMVGVHVPDEEGARRELRRG 161 (205)
T ss_pred HHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhC---CceEEEEeeccHHHHHHHHhhcC
Confidence 111111221 23446789999887776665555555532 34378889999999998877654
No 259
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.54 E-value=0.00068 Score=53.89 Aligned_cols=112 Identities=13% Similarity=0.224 Sum_probs=63.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh---C--CceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 107 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~---~--~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 107 (195)
.-++|.|++|+|||+++..++..+ | +.++++.+++..... .+... ... ...+ ...+..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~-----------~~~~~-~~~---~~~~-l~~l~~- 162 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKD-----------TFSNS-ETS---EEQL-LNDLSN- 162 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHH-----------HHhhc-ccc---HHHH-HHHhcc-
Confidence 368999999999999999999987 2 456677666544321 11111 001 1112 222322
Q ss_pred CCCCcEEEeCCCC---CHHHHHHHHHHHhhc--CCCcCEEEEEEcCHHHHHHHHhcCCCCCC
Q 029307 108 SCQKGFILDGFPR---TEVQAQKLDEMLEKQ--GKKVDKVLNFAIDDAVLEERITGRWIHPS 164 (195)
Q Consensus 108 ~~~~~~iid~~~~---~~~~~~~l~~~l~~~--~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~ 164 (195)
....|||.... +......+.+++... ...+ .+|--..+.+.+.+++-.|-.++.
T Consensus 163 --~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~-tiitSNl~~~~l~~~~g~ri~sRl 221 (244)
T PRK07952 163 --VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRP-TGMLTNSNMEEMTKLLGERVMDRM 221 (244)
T ss_pred --CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCC-EEEeCCCCHHHHHHHhChHHHHHH
Confidence 34678886542 222233344444432 1344 677778888888866655544433
No 260
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.53 E-value=0.00013 Score=59.65 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=30.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l 66 (195)
.+++|+|+||.|||||.+|-.|+++ +..+||.|..
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~ 37 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI 37 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence 3468999999999999999999999 5689998653
No 261
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.53 E-value=8.3e-05 Score=57.17 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
|.+|+|+||+|+||||.+-+|+.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 5789999999999999999999877
No 262
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.53 E-value=0.00024 Score=53.37 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=24.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC--Cceeeh
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYC--LCHLAT 63 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~--~~~i~~ 63 (195)
+++|+|++|||||++|..++...+ ..|+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~~~~y~at 32 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGPVTYIAT 32 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCeEEEEc
Confidence 478999999999999999988754 445544
No 263
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.0011 Score=58.53 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCC
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~ 58 (195)
-+..++|+||+|+||||+|+.|++.++.
T Consensus 37 l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 37 VHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3445889999999999999999998865
No 264
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.52 E-value=0.00062 Score=58.52 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+|.+|+|+|++|+||||++..|+..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 357799999999999999999998877
No 265
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.52 E-value=0.00011 Score=61.70 Aligned_cols=33 Identities=30% Similarity=0.560 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
.|+-++|.||||+|||++++.++..++..++..
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence 456799999999999999999999998665544
No 266
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.52 E-value=0.00017 Score=54.13 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=19.0
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
...+..++|.|++|+|||++.+.+.+.+
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5667899999999999999999888766
No 267
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.0016 Score=55.34 Aligned_cols=30 Identities=20% Similarity=0.260 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
+-+.-++|.||+|+||||+|..+++.+++.
T Consensus 36 ~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 334458999999999999999999998764
No 268
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00019 Score=59.38 Aligned_cols=48 Identities=21% Similarity=0.439 Sum_probs=38.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCcee--ehHHHHHHHHHcCChHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLRAAVAAKTPLG 78 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i--~~d~l~r~~~~~~~~~~ 78 (195)
+|+=|++.||||+|||-+|++.+.+.++.+| ...+++++.+..+..+.
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlV 233 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLV 233 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHH
Confidence 3455999999999999999999999986544 44688998887765443
No 269
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.51 E-value=0.0015 Score=54.19 Aligned_cols=104 Identities=15% Similarity=0.225 Sum_probs=58.9
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh-----CCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 107 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~-----~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 107 (195)
.-++|.|++|+|||+++..+++.+ .+.+++..+++...... ..... ...... ...+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~----------~~~~~-----~~~~~~-~~~l~~- 246 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREI----------RFNND-----KELEEV-YDLLIN- 246 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHH----------Hhccc-----hhHHHH-HHHhcc-
Confidence 579999999999999999999976 35677777765543210 00000 000111 122222
Q ss_pred CCCCcEEEeCCC---CCHHHHHHHHHHHhhc--CCCcCEEEEEEcCHHHHHHHH
Q 029307 108 SCQKGFILDGFP---RTEVQAQKLDEMLEKQ--GKKVDKVLNFAIDDAVLEERI 156 (195)
Q Consensus 108 ~~~~~~iid~~~---~~~~~~~~l~~~l~~~--~~~~d~vi~l~~~~e~~~~Rl 156 (195)
....|||... .+......|..++... ...+ .+|--..+++.+..++
T Consensus 247 --~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~-tIiTSNl~~~el~~~~ 297 (329)
T PRK06835 247 --CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKK-MIISTNLSLEELLKTY 297 (329)
T ss_pred --CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCC-EEEECCCCHHHHHHHH
Confidence 3457888653 2333344455554432 1234 6777777887776543
No 270
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=97.51 E-value=0.00012 Score=57.46 Aligned_cols=112 Identities=15% Similarity=0.102 Sum_probs=65.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhC---CceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK 106 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~---~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 106 (195)
+.|++|+|.|..||||+.+.+.|.+.++ +.+.+...--.++.. ...+......
T Consensus 29 ~~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~eE~~------------------------~p~lwRfw~~ 84 (228)
T PF03976_consen 29 GIPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDEELR------------------------RPFLWRFWRA 84 (228)
T ss_dssp HHEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HHHHT------------------------S-TTHHHHTT
T ss_pred CCcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChhHcC------------------------CCcHHHHHHh
Confidence 4558999999999999999999999885 344443211111110 1112223333
Q ss_pred CCC-CCcEEEeCC-------------------CCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 029307 107 PSC-QKGFILDGF-------------------PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSG 166 (195)
Q Consensus 107 ~~~-~~~~iid~~-------------------~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g 166 (195)
+.. +...|+++. .....+...|++.|...|..+ +-+||.++.++..+|+.+|..++.+.
T Consensus 85 lP~~G~I~if~rSWY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~I-iKfflhIsk~eQ~kRl~~~~~~p~~~ 163 (228)
T PF03976_consen 85 LPARGQIGIFDRSWYEDVLVERVEGFIDEAEWERRLEEINRFERMLADDGTLI-IKFFLHISKKEQKKRLKEREEDPLKR 163 (228)
T ss_dssp S--TT-EEEEES-GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEE-EEEEEE--HHHHHHHHHHHHHSCCCG
T ss_pred CCCCCEEEEEecchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeE-EEEEEEeCHHHHHHHHHHHhcCcccc
Confidence 322 334455531 112233455667777777777 89999999999999999998765543
No 271
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.51 E-value=0.00067 Score=61.06 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=26.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
++-+..++|+|++|+||||+++.|++.+++.
T Consensus 35 ~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 35 GRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 3445679999999999999999999998764
No 272
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.50 E-value=0.00064 Score=62.25 Aligned_cols=34 Identities=32% Similarity=0.593 Sum_probs=28.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
..|.-|+|.||||||||++++.++...+..++.+
T Consensus 485 ~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v 518 (733)
T TIGR01243 485 RPPKGVLLFGPPGTGKTLLAKAVATESGANFIAV 518 (733)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 3455699999999999999999999998766654
No 273
>PHA03138 thymidine kinase; Provisional
Probab=97.50 E-value=0.0014 Score=54.11 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
-..|.|.|+.|+||||+++.+.+.+
T Consensus 12 ~~riYleG~~GvGKTT~~~~~l~~~ 36 (340)
T PHA03138 12 ILRIYLDGAFGIGKTTAAEAFLHGF 36 (340)
T ss_pred EEEEEEECCCCcCHHhHHHHHHHhh
Confidence 3479999999999999998876655
No 274
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.0012 Score=58.28 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=25.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
+-+..++|+||+|+||||+|+.|++.+++.
T Consensus 36 ~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 36 RLHHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 444568999999999999999999999763
No 275
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.49 E-value=0.00012 Score=62.25 Aligned_cols=34 Identities=24% Similarity=0.532 Sum_probs=28.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
..|+-|+|.||||+|||++++.++...+..++..
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 3566799999999999999999999988765544
No 276
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.49 E-value=0.00025 Score=51.71 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=33.3
Q ss_pred HHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCC
Q 029307 16 DLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (195)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~ 58 (195)
+-...+.++.....+.+.+|++.|.-||||||+++.+++.+|.
T Consensus 9 ~~t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 9 EATLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 3344555554444456779999999999999999999999984
No 277
>PF13245 AAA_19: Part of AAA domain
Probab=97.49 E-value=0.00014 Score=47.21 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=17.8
Q ss_pred CcEEEEEcCCCCChh-HHHHHHHHHh
Q 029307 32 DKRLILVGPPGSGKG-TQSPIIKDEY 56 (195)
Q Consensus 32 ~~iI~i~G~pGsGKS-Tla~~L~~~~ 56 (195)
..+.+|.|+|||||| |+++.++..+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 357888999999999 4555454433
No 278
>PRK06921 hypothetical protein; Provisional
Probab=97.48 E-value=0.0024 Score=51.43 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh----C--CceeehHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY----C--LCHLATGDMLR 68 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~----~--~~~i~~d~l~r 68 (195)
..-++|.|++|+|||+++..+++.+ | +.+++..+++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~ 159 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG 159 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH
Confidence 4569999999999999999998865 2 24666655543
No 279
>PHA03135 thymidine kinase; Provisional
Probab=97.48 E-value=0.0055 Score=50.70 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
-.+|.|.|+.|+||||+++.+++.
T Consensus 10 ~~rIYlDG~~GvGKTT~~~~l~~~ 33 (343)
T PHA03135 10 LIRVYLDGPFGIGKTSMLNEMPDH 33 (343)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHh
Confidence 347999999999999999999885
No 280
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0016 Score=52.96 Aligned_cols=40 Identities=23% Similarity=0.462 Sum_probs=32.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCc--eeehHHHHHHHHHc
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLC--HLATGDMLRAAVAA 73 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~--~i~~d~l~r~~~~~ 73 (195)
=|++.||||.|||++|++++-+-|.. -++..|++.+-+..
T Consensus 168 giLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGE 209 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 209 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhcc
Confidence 49999999999999999999988754 44556888776653
No 281
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.48 E-value=0.0015 Score=53.09 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
..++|.|+||+||||+|+.+++.+
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH
Confidence 369999999999999998877755
No 282
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.48 E-value=0.00024 Score=58.02 Aligned_cols=30 Identities=40% Similarity=0.616 Sum_probs=25.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
..+..++|+||||+|||++++.+++.++..
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 344568999999999999999999998754
No 283
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.48 E-value=0.00088 Score=60.13 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=25.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
+-+..++|+|++|+||||+++.|++.+++.
T Consensus 36 rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 36 RLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 334458999999999999999999999764
No 284
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.47 E-value=0.00014 Score=54.76 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
..++++.|+|++||||||+++.|...+.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 3456899999999999999999987763
No 285
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.47 E-value=0.0022 Score=57.22 Aligned_cols=43 Identities=14% Similarity=0.285 Sum_probs=31.0
Q ss_pred HHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 16 DLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
++...+..... .++-+..++|+|++|+||||+++.|++.+++.
T Consensus 23 ~v~~~L~~~i~-~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 23 HVSRTLQNAID-TGRVAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred HHHHHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 33344443333 34445678999999999999999999998754
No 286
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.47 E-value=9.2e-05 Score=51.24 Aligned_cols=22 Identities=32% Similarity=0.664 Sum_probs=20.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 029307 35 LILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 35 I~i~G~pGsGKSTla~~L~~~~ 56 (195)
|+|.|+||+|||++++.|++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998854
No 287
>PF05729 NACHT: NACHT domain
Probab=97.47 E-value=0.00011 Score=53.83 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+++|.|.+|+||||+++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 68999999999999999999877
No 288
>COG4240 Predicted kinase [General function prediction only]
Probab=97.47 E-value=0.00016 Score=56.42 Aligned_cols=40 Identities=28% Similarity=0.303 Sum_probs=31.8
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh---C---CceeehHHHHH
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY---C---LCHLATGDMLR 68 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~---~---~~~i~~d~l~r 68 (195)
.++|.++.|+||-||||||++..|-..+ | ...+|+||++.
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYl 92 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYL 92 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhc
Confidence 4678899999999999999998876655 2 35678888754
No 289
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.47 E-value=0.00011 Score=56.90 Aligned_cols=25 Identities=28% Similarity=0.598 Sum_probs=21.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
.++-+++|+||+||||||+.+.|-.
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4566899999999999999998743
No 290
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.46 E-value=0.00014 Score=60.28 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=27.4
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceee
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~ 62 (195)
+.|+|.|++||||||+++.|+..+|..++.
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 589999999999999999999999987754
No 291
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00021 Score=63.83 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=29.7
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCC--ceeeh
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCL--CHLAT 63 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~--~~i~~ 63 (195)
..+++|++++||||.|||++++.+++.+|- ..+++
T Consensus 347 ~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sL 383 (782)
T COG0466 347 KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISL 383 (782)
T ss_pred cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEec
Confidence 456679999999999999999999999974 44555
No 292
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.45 E-value=0.00019 Score=63.22 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=25.2
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
..+.++++|.||||+||||+++.|++.+
T Consensus 100 ~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 100 EEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 4566799999999999999999999976
No 293
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.45 E-value=0.0061 Score=50.11 Aligned_cols=104 Identities=22% Similarity=0.213 Sum_probs=58.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh---C--CceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 105 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~---~--~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 105 (195)
.+.-++|.|++|+|||+++..+++.+ | +.++...+++.+... ....+ .....+ ..+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~-----------~~~~~------~~~~~l-~~l~ 216 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKN-----------SISDG------SVKEKI-DAVK 216 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHH-----------HHhcC------cHHHHH-HHhc
Confidence 34569999999999999999999987 3 346677666554322 11111 111122 2222
Q ss_pred CCCCCCcEEEeCCC---CCHHHHH-HHHHHHhhc--CCCcCEEEEEEcCHHHHHHHH
Q 029307 106 KPSCQKGFILDGFP---RTEVQAQ-KLDEMLEKQ--GKKVDKVLNFAIDDAVLEERI 156 (195)
Q Consensus 106 ~~~~~~~~iid~~~---~~~~~~~-~l~~~l~~~--~~~~d~vi~l~~~~e~~~~Rl 156 (195)
.....|||.+. .+...+. .|..++... ...+ .+|--..+.+.+.+++
T Consensus 217 ---~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~-ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 217 ---EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELP-TFFTSNFDFDELEHHL 269 (306)
T ss_pred ---CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCe-EEEECCCCHHHHHHHH
Confidence 24567888653 2222232 233333321 3444 5666677777777665
No 294
>PLN03025 replication factor C subunit; Provisional
Probab=97.44 E-value=0.00019 Score=59.21 Aligned_cols=25 Identities=44% Similarity=0.674 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+.++|.||||+||||++..+++.+
T Consensus 34 ~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 34 MPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999999987
No 295
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.44 E-value=0.00088 Score=52.53 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
--+|+|||||||||.|--..+-+
T Consensus 4 gqvVIGPPgSGKsTYc~g~~~fl 26 (290)
T KOG1533|consen 4 GQVVIGPPGSGKSTYCNGMSQFL 26 (290)
T ss_pred ceEEEcCCCCCccchhhhHHHHH
Confidence 36899999999999987766644
No 296
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.43 E-value=0.0056 Score=46.39 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=25.4
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCC
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~ 58 (195)
++-+..++|.|++|+||||+++.+++.+..
T Consensus 11 ~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 11 GRLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 344568999999999999999999998743
No 297
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.43 E-value=0.00043 Score=53.87 Aligned_cols=37 Identities=27% Similarity=0.267 Sum_probs=29.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh-----CCceeehHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDM 66 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~-----~~~~i~~d~l 66 (195)
..+..++|+|++|+|||++++.+++.. .+.+++..++
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 445689999999999999999998765 2456666554
No 298
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0017 Score=53.90 Aligned_cols=34 Identities=32% Similarity=0.582 Sum_probs=30.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
++++-|++.||||+|||-+|++++++-|...|++
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv 158 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAKEAGANFINV 158 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence 4567899999999999999999999998777766
No 299
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=97.43 E-value=0.00049 Score=57.07 Aligned_cols=110 Identities=15% Similarity=0.064 Sum_probs=61.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh---CCceeehH-HHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHH--HHHHHHcCC
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEY---CLCHLATG-DMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVG--IIDEAMKKP 107 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~---~~~~i~~d-~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~l~~~ 107 (195)
-|+++|.+|+||||++-+|.+.+ |++.+++| |-+|..+.++ -.+.+++.-.+ .+.+..+-.
T Consensus 52 tvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~kn-------------lgfs~edreenirriaevaklf 118 (627)
T KOG4238|consen 52 TVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKN-------------LGFSPEDREENIRRIAEVAKLF 118 (627)
T ss_pred eEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhc-------------cCCCchhHHHHHHHHHHHHHHH
Confidence 59999999999999999887755 77877774 3344444322 22222222111 111111111
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHH
Q 029307 108 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 156 (195)
Q Consensus 108 ~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl 156 (195)
.....+.|..|.+...+.+.-...+.+....+-+-||++++.++|.+|-
T Consensus 119 adaglvcitsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd 167 (627)
T KOG4238|consen 119 ADAGLVCITSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRD 167 (627)
T ss_pred hcCCceeeehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcC
Confidence 1233455566655444332221222223334448899999999999883
No 300
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0022 Score=58.16 Aligned_cols=40 Identities=30% Similarity=0.451 Sum_probs=32.9
Q ss_pred hcccC-CCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 24 RMKCA-SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 24 ~~~~~-~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
+|... .+-|+=++|+||||+|||-+|++++-+-|++++++
T Consensus 335 ~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~sv 375 (774)
T KOG0731|consen 335 QYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSV 375 (774)
T ss_pred HHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeee
Confidence 44444 34455599999999999999999999999998877
No 301
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.41 E-value=0.00029 Score=58.34 Aligned_cols=31 Identities=35% Similarity=0.551 Sum_probs=26.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCce
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~ 60 (195)
..+..++|.||||+||||+++.+++.++...
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 3445789999999999999999999997644
No 302
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.41 E-value=0.0042 Score=53.59 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=30.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh-------CCceeehHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY-------CLCHLATGDMLRAAV 71 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~-------~~~~i~~d~l~r~~~ 71 (195)
.-++|.|++|+|||++++.+++.+ .+.|++..+++.+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~ 176 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLV 176 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence 359999999999999999999875 356778877655543
No 303
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.41 E-value=0.00047 Score=53.92 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh-----CCceeehHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDM 66 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~-----~~~~i~~d~l 66 (195)
....++|+|++|+|||++++.+++.. .+.+++..+.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 34579999999999999999999876 5667776554
No 304
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.40 E-value=0.0026 Score=56.85 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=32.1
Q ss_pred HHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCCce
Q 029307 16 DLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (195)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~ 60 (195)
.++..+...+. .++-+.-++|+|++|+||||+|+.|++.+++..
T Consensus 31 ~~v~~L~~~~~-~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~ 74 (598)
T PRK09111 31 AMVRTLTNAFE-TGRIAQAFMLTGVRGVGKTTTARILARALNYEG 74 (598)
T ss_pred HHHHHHHHHHH-cCCCCceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 34444444433 344456799999999999999999999987653
No 305
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.40 E-value=0.00022 Score=61.89 Aligned_cols=31 Identities=29% Similarity=0.545 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceee
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~ 62 (195)
..+.+|+||+||||||..+.|++.+|+.++.
T Consensus 110 ~~iLLltGPsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970|consen 110 SRILLLTGPSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred ceEEEEeCCCCCCchhHHHHHHHhhCceeee
Confidence 3488999999999999999999999987654
No 306
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.40 E-value=0.0024 Score=51.06 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=35.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh--HHHHHHHHHcC
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLRAAVAAK 74 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~--d~l~r~~~~~~ 74 (195)
.|+.|++.||||.|||-+|+.|+.+.+.+.+.+ -+++-++...+
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdg 195 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDG 195 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhH
Confidence 366899999999999999999999998776554 46666666543
No 307
>PRK06620 hypothetical protein; Validated
Probab=97.39 E-value=0.00015 Score=56.59 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=26.4
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
..++|.||+|||||++++.+++..+..+++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~ 75 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKD 75 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcch
Confidence 4689999999999999999999888765553
No 308
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.39 E-value=0.00017 Score=58.04 Aligned_cols=26 Identities=42% Similarity=0.726 Sum_probs=24.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
.+++.||||.||||+|..+++++|..
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 79999999999999999999999764
No 309
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.39 E-value=0.00018 Score=49.81 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIK 53 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~ 53 (195)
.+..+++|.|++||||||+++.+.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 345689999999999999999987
No 310
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.38 E-value=0.00018 Score=61.38 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=27.5
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
..|+|.||||+|||++|+.|++.++.+++.+
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~i 139 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFAIA 139 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCceec
Confidence 4699999999999999999999998776655
No 311
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.38 E-value=0.00047 Score=49.02 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=29.4
Q ss_pred HHHHHHhcccC--CCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 18 MTELLRRMKCA--SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 18 ~~~~~~~~~~~--~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+-.+.+.+... +.+|.++.+-|++|+|||.+++.|++++
T Consensus 37 v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 37 VVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 33444444433 5677788899999999999999999974
No 312
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=97.36 E-value=0.00066 Score=53.14 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=28.6
Q ss_pred HHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 16 DLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
++|+...++.. +--..++.+.|+||+||||.+..+.+.+.
T Consensus 105 e~y~~~~e~L~--~n~~~l~glag~pGtgkst~~a~v~~aWp 144 (323)
T KOG2702|consen 105 EFYPVKYEALT--SNNEELTGLAGRPGTGKSTRIAAVDNAWP 144 (323)
T ss_pred hhhHHHHHHhc--ccchheeeeecCCCCcchhHHHHHHhhcc
Confidence 34444444433 33345899999999999999999998653
No 313
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.36 E-value=0.0002 Score=62.60 Aligned_cols=34 Identities=32% Similarity=0.518 Sum_probs=28.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
..|+-++|.||||+|||++++.|+...+.+++..
T Consensus 86 ~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence 4455699999999999999999999998776654
No 314
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.36 E-value=0.00022 Score=61.30 Aligned_cols=33 Identities=39% Similarity=0.654 Sum_probs=27.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceee
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~ 62 (195)
..|.-++|.||||+|||++++.++..++..++.
T Consensus 215 ~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~ 247 (438)
T PTZ00361 215 KPPKGVILYGPPGTGKTLLAKAVANETSATFLR 247 (438)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE
Confidence 355679999999999999999999998765554
No 315
>PRK09183 transposase/IS protein; Provisional
Probab=97.36 E-value=0.0045 Score=49.63 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh---C--CceeehHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDML 67 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~---~--~~~i~~d~l~ 67 (195)
.+..++|.||+|+|||+++..|+... | +.+++..+++
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 34578999999999999999996653 3 3455654544
No 316
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.34 E-value=0.00035 Score=54.03 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=25.0
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
.+.+++|+|+|++||||||+...+.+.++
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45577999999999999999999988753
No 317
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.34 E-value=0.00024 Score=53.44 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCL 58 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~ 58 (195)
..++++||+|+|||.+++.|++.+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999998874
No 318
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.34 E-value=0.00012 Score=52.28 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
.++|.|+||.||||+++.|++.++..+..+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 378999999999999999999998654433
No 319
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.33 E-value=0.00021 Score=54.98 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
+|+|+||+||||||+...|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999998888764
No 320
>PRK13695 putative NTPase; Provisional
Probab=97.33 E-value=0.00022 Score=53.56 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
|+|+|+|++||||||+++.+...+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999987665
No 321
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.33 E-value=0.0052 Score=48.31 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=27.0
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh------CCceeeh
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY------CLCHLAT 63 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~------~~~~i~~ 63 (195)
-.++.+++|.|+||+|||+++..++... .+.+++.
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 3456799999999999999988876654 3456665
No 322
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.32 E-value=0.00024 Score=54.79 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
|.+|+|+|++||||||+.+.+.+.+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998875
No 323
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.32 E-value=0.00022 Score=53.36 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.++-.|.|+||+||||||+.++++.-
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhc
Confidence 34557999999999999999999874
No 324
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.31 E-value=0.00025 Score=60.41 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=26.9
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
..|+|.||||+|||++|+.|++.++.+++..
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~ 147 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIA 147 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence 4799999999999999999999998766543
No 325
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.31 E-value=0.00031 Score=55.49 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhC-----CceeehHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGD 65 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~-----~~~i~~d~ 65 (195)
+..++|+||+|+|||+++..+++... +.+++.++
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 35799999999999999999988764 56777754
No 326
>PRK06893 DNA replication initiation factor; Validated
Probab=97.30 E-value=0.00033 Score=55.10 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh-----CCceeehH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATG 64 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~-----~~~~i~~d 64 (195)
+.++|.|+||+|||+++..+++++ +..+++..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 478999999999999999999875 56677764
No 327
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.30 E-value=0.0098 Score=50.68 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=29.5
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh-----C--CceeehHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY-----C--LCHLATGDMLRAA 70 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~-----~--~~~i~~d~l~r~~ 70 (195)
.-++|.|++|+|||++++.+++.+ + +.+++..++..+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~ 181 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDF 181 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHH
Confidence 358999999999999999998765 2 4577876665443
No 328
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.30 E-value=0.00026 Score=56.64 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
+.+++|+|++||||||+++.+.+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999999875
No 329
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.30 E-value=0.00035 Score=43.44 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+.+|+|+.||||||+..++.--+
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999886644
No 330
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=97.30 E-value=0.0012 Score=50.35 Aligned_cols=48 Identities=10% Similarity=0.030 Sum_probs=34.1
Q ss_pred cEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 112 GFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 112 ~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
.+++|....-..-+-.|.++...+|..+ .+||+....+++.++...|.
T Consensus 96 iilcdD~FY~kSMR~k~~ki~kd~GciF-G~Iflas~ide~LqaNS~Rs 143 (291)
T KOG4622|consen 96 IILCDDIFYLKSMRHKFQKIAKDHGCIF-GIIFLASGIDEALQANSHRS 143 (291)
T ss_pred EEEechHHHHHHhhhHHHHHHHHcCCee-eeeehhhhHHHHHHhccccc
Confidence 5666654332333445667777788877 89999999999999887774
No 331
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.004 Score=55.66 Aligned_cols=31 Identities=19% Similarity=0.400 Sum_probs=26.0
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
++-+..++|.|++|+||||+++.|++.+++.
T Consensus 35 ~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 35 GRVAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3445568999999999999999999998753
No 332
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.0047 Score=55.21 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
+-+..++|.|++|+||||+|+.|++.+++.
T Consensus 36 ri~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 36 RVAPAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 335689999999999999999999998763
No 333
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.28 E-value=0.00026 Score=51.49 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
++|.|+|+.+|||||+++.|.+.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998876
No 334
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.27 E-value=0.0097 Score=53.53 Aligned_cols=29 Identities=21% Similarity=0.403 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
-+.-++|+|++|+||||+|+.|++.+++.
T Consensus 37 l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 37 IAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 34578999999999999999999998764
No 335
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.27 E-value=0.00049 Score=57.09 Aligned_cols=28 Identities=29% Similarity=0.616 Sum_probs=25.2
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
..+.++++|.||+|+||||+++.|++-+
T Consensus 85 ~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 85 EERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred CccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4667799999999999999999999876
No 336
>PHA02244 ATPase-like protein
Probab=97.25 E-value=0.0003 Score=58.94 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=28.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHHH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l 66 (195)
-|+|.|++|+|||++++.|+..++.+++.+..+
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l 153 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI 153 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC
Confidence 488899999999999999999999888877443
No 337
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.00048 Score=56.29 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=32.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l 66 (195)
+-++|+|.|+.|||||-++=-|+.+|+..+||.|.+
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkm 41 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKM 41 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccce
Confidence 456899999999999999999999999999998653
No 338
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.24 E-value=0.0019 Score=57.57 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=30.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh-------CCceeehHHHHHHHH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEY-------CLCHLATGDMLRAAV 71 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~-------~~~~i~~d~l~r~~~ 71 (195)
-++|.|++|+|||.+++.+++.. .+.|++..+++.+..
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~ 360 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFI 360 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHH
Confidence 48999999999999999999865 347888877665543
No 339
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.24 E-value=0.013 Score=49.96 Aligned_cols=29 Identities=21% Similarity=0.428 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
.+.-++|.||+|+|||++|..+++.+.+.
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 45569999999999999999999988654
No 340
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.24 E-value=0.00032 Score=52.52 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=25.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh---C--CceeehH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEY---C--LCHLATG 64 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~---~--~~~i~~d 64 (195)
+++++|+|||||||++..++..+ | +.+++.|
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 68999999999999999988876 3 3456664
No 341
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.24 E-value=0.0041 Score=55.25 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=31.1
Q ss_pred HHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 16 DLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
.++..+...+. .+.-+..++|+|++|+||||+++.|++.++..
T Consensus 23 ~iv~~L~~~i~-~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 23 FVVETLKHSIE-SNKIANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred HHHHHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 33444444333 23445679999999999999999999998753
No 342
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.23 E-value=0.00063 Score=51.49 Aligned_cols=108 Identities=24% Similarity=0.368 Sum_probs=57.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh-----CCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 105 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~-----~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 105 (195)
.+.-++|.|++|+|||++|..+++++ .+.+++..+++.+.-.. ...+ ..... ...+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~-----------~~~~------~~~~~-~~~l~ 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQS-----------RSDG------SYEEL-LKRLK 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCC-----------HCCT------THCHH-HHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccccc-----------cccc------chhhh-cCccc
Confidence 45679999999999999999998755 35678887776554221 0011 01112 22333
Q ss_pred CCCCCCcEEEeCCCCCH---HHHHHHHHHHhhc-CCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 106 KPSCQKGFILDGFPRTE---VQAQKLDEMLEKQ-GKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 106 ~~~~~~~~iid~~~~~~---~~~~~l~~~l~~~-~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
. ....|+|.+.... .....+.+++... +..+ .+|--..+++.+.+.+..+.
T Consensus 108 ~---~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~-tIiTSN~~~~~l~~~~~d~~ 162 (178)
T PF01695_consen 108 R---VDLLILDDLGYEPLSEWEAELLFEIIDERYERKP-TIITSNLSPSELEEVLGDRA 162 (178)
T ss_dssp T---SSCEEEETCTSS---HHHHHCTHHHHHHHHHT-E-EEEEESS-HHHHHT------
T ss_pred c---ccEecccccceeeecccccccchhhhhHhhcccC-eEeeCCCchhhHhhcccccc
Confidence 3 3458899765332 2333334444322 2234 66666788888887777553
No 343
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0082 Score=50.51 Aligned_cols=30 Identities=27% Similarity=0.543 Sum_probs=26.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
=|+++||||+|||-+|++++.+-|..++|+
T Consensus 247 gvLm~GPPGTGKTlLAKAvATEc~tTFFNV 276 (491)
T KOG0738|consen 247 GVLMVGPPGTGKTLLAKAVATECGTTFFNV 276 (491)
T ss_pred eeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence 589999999999999999999998555544
No 344
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.21 E-value=0.009 Score=53.25 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=26.0
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
++-+.-++|.||+|+||||+|+.+++.+++.
T Consensus 35 ~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 35 NKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3445568999999999999999999998653
No 345
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.21 E-value=0.00063 Score=62.67 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i 61 (195)
++++++|.||||+|||++++.|++.++..++
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~ 376 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFV 376 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeE
Confidence 4568999999999999999999999976554
No 346
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.21 E-value=0.00034 Score=54.75 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=21.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
.++-.++|.||+||||||+...|.-
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4566899999999999999998865
No 347
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.21 E-value=0.00039 Score=56.17 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+|+++|++|+||||.+..|+..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 456789999999999999999998876
No 348
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00077 Score=54.93 Aligned_cols=42 Identities=26% Similarity=0.520 Sum_probs=32.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCce--eehHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCH--LATGDMLRAAV 71 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~--i~~d~l~r~~~ 71 (195)
+.|+.++|.||||.|||-+|+.+++.+++.. ++.+.+..+.+
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi 207 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI 207 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence 5677899999999999999999999997654 44445554443
No 349
>PHA02624 large T antigen; Provisional
Probab=97.21 E-value=0.00075 Score=59.74 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=33.4
Q ss_pred HHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 18 MTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 18 ~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
+..+.+...-.-++..+|+|.||||+||||++..|.+.++-..+++
T Consensus 417 ~~~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV 462 (647)
T PHA02624 417 IYDILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV 462 (647)
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence 3334444432334456999999999999999999999996556665
No 350
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.20 E-value=0.00041 Score=51.46 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
+...|+|.|++||||||+.+.|...
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 3568999999999999999999874
No 351
>PRK14974 cell division protein FtsY; Provisional
Probab=97.20 E-value=0.00038 Score=57.84 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+|.+|+|+|++|+||||++..|+..+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 346799999999999999888887765
No 352
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.20 E-value=0.00038 Score=48.42 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.|+|.|++||||||+.+.|+...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 353
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.20 E-value=0.00031 Score=51.14 Aligned_cols=24 Identities=46% Similarity=0.805 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+.|.|.|++||||||+++.|....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 369999999999999999997743
No 354
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.20 E-value=0.0003 Score=51.23 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=24.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC-----CceeehH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYC-----LCHLATG 64 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~-----~~~i~~d 64 (195)
+++|+|+||+||||++..++.... +.+++.+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 478999999999999999988762 4455553
No 355
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.20 E-value=0.0004 Score=57.36 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+|+|+||+||||||++..|+..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 356799999999999999999998876
No 356
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.19 E-value=0.00063 Score=55.70 Aligned_cols=35 Identities=29% Similarity=0.390 Sum_probs=27.3
Q ss_pred HHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 22 ~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+........+.+|+|+|++||||||++..|...+
T Consensus 24 ~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 24 LDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred HHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34443334567799999999999999999988865
No 357
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.19 E-value=0.0055 Score=55.67 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=26.4
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
++-+..+++.||+|+||||+|+.|++.+++.
T Consensus 37 ~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 37 NKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 3445678999999999999999999998764
No 358
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.19 E-value=7.6e-05 Score=59.37 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
.++.+++|+|++||||||+.+.|+.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4567999999999999999999985
No 359
>PHA03134 thymidine kinase; Provisional
Probab=97.18 E-value=0.016 Score=47.95 Aligned_cols=25 Identities=8% Similarity=0.021 Sum_probs=21.6
Q ss_pred CEEEEEEcCHHHHHHHHhcCCCCCC
Q 029307 140 DKVLNFAIDDAVLEERITGRWIHPS 164 (195)
Q Consensus 140 d~vi~l~~~~e~~~~Rl~~R~~~~~ 164 (195)
+.+|+++.+.++..+|+.+|....+
T Consensus 165 ~niVl~~l~~~e~~~Rl~~R~R~gE 189 (340)
T PHA03134 165 GNLVVTTLNPDEHLRRLRARARIGE 189 (340)
T ss_pred CeEEEEeCCHHHHHHHHHHcCCCcc
Confidence 6899999999999999999965433
No 360
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00029 Score=59.81 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=27.1
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 35 LILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 35 I~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
.+|.||||+||||+..++|+.+++.++++
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~ydIydL 266 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLNYDIYDL 266 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence 89999999999999999999999887776
No 361
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.18 E-value=0.00026 Score=50.70 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|++||||||+.+.|+..+
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEccCCCccccceeeecccc
Confidence 345799999999999999999998865
No 362
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.18 E-value=0.0056 Score=54.96 Aligned_cols=30 Identities=20% Similarity=0.260 Sum_probs=25.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
+-+.-++|.||+|+||||+|+.|++.+++.
T Consensus 36 ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 334459999999999999999999999874
No 363
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=97.17 E-value=0.0011 Score=55.27 Aligned_cols=115 Identities=15% Similarity=0.134 Sum_probs=67.8
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQK 111 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 111 (195)
...+++.|+.|||||++...|.+. +..++++..+..-. +...|.. .. ..-+.....+.+...+.......
T Consensus 141 ~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr---GS~fG~~-----~~-~qpsQ~~Fe~~l~~~l~~~~~~~ 210 (345)
T PRK11784 141 FPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHR---GSSFGRL-----GG-PQPSQKDFENLLAEALLKLDPAR 210 (345)
T ss_pred CceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhc---cccccCC-----CC-CCcchHHHHHHHHHHHHcCCCCC
Confidence 456889999999999999999775 77788885543221 1111110 00 01122334555666666655555
Q ss_pred cEEEeCCCCCHH---HHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 112 GFILDGFPRTEV---QAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 112 ~~iid~~~~~~~---~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
.+++++--+..- -...|.+.+. .. -+|++++|.+.+++|+.+-..
T Consensus 211 ~i~vE~Es~~IG~~~lP~~l~~~m~---~~--~~v~i~~~~e~Rv~~l~~~Y~ 258 (345)
T PRK11784 211 PIVVEDESRRIGRVHLPEALYEAMQ---QA--PIVVVEAPLEERVERLLEDYV 258 (345)
T ss_pred eEEEEeccccccCccCCHHHHHHHh---hC--CEEEEECCHHHHHHHHHHHhh
Confidence 677775322211 1122333332 12 478999999999999987653
No 364
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00043 Score=60.48 Aligned_cols=34 Identities=29% Similarity=0.514 Sum_probs=29.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
+.+..++|.||||+|||.+|+.++...+..++++
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v 307 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISV 307 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEe
Confidence 4556899999999999999999999887776665
No 365
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.0054 Score=50.44 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCC
Q 029307 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (195)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~ 58 (195)
.++...+.+... .+.-+..+++.|+.|+||+|+++.+++.+..
T Consensus 10 ~~~~~~l~~~~~-~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c 52 (313)
T PRK05564 10 ENIKNRIKNSII-KNRFSHAHIIVGEDGIGKSLLAKEIALKILG 52 (313)
T ss_pred HHHHHHHHHHHH-cCCCCceEEeECCCCCCHHHHHHHHHHHHcC
Confidence 344455555443 2345568899999999999999999998743
No 366
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.17 E-value=0.0058 Score=54.33 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
.++...+...+. .++-+..++|+||+|+||||+++.|++.+++.
T Consensus 22 ~~v~~~L~~~i~-~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 22 EHITKTLKNAIK-QGKISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred HHHHHHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 334444444433 23445678999999999999999999998754
No 367
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.17 E-value=0.017 Score=50.54 Aligned_cols=29 Identities=28% Similarity=0.462 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~ 58 (195)
.-+..++|+|++|+||||+|+.+++.+++
T Consensus 36 ~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 36 RVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34456889999999999999999998875
No 368
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.17 E-value=0.00041 Score=52.75 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+..++|+|++||||||+.+.|...+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5689999999999999999998765
No 369
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.16 E-value=0.00037 Score=57.73 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
.++-.++|.||+||||||+.+.++-
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4556899999999999999999986
No 370
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.16 E-value=0.00067 Score=55.49 Aligned_cols=24 Identities=38% Similarity=0.743 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+.++|+|++|+||||+++.+++.+
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 357999999999999999999976
No 371
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.15 E-value=0.00077 Score=54.75 Aligned_cols=28 Identities=32% Similarity=0.304 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.....+|.|+|+|||||||+...+...+
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4556789999999999999999888775
No 372
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.15 E-value=0.00035 Score=59.52 Aligned_cols=22 Identities=32% Similarity=0.756 Sum_probs=21.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 029307 35 LILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 35 I~i~G~pGsGKSTla~~L~~~~ 56 (195)
|+|.|+||+||||+|++|++-|
T Consensus 266 ILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 266 ILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred eEEecCCCCChhHHHHHHHHHH
Confidence 9999999999999999999977
No 373
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.14 E-value=0.0064 Score=53.57 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=32.9
Q ss_pred cCCCC-CHHHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCC
Q 029307 8 NLEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (195)
Q Consensus 8 ~~~~~-~~~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~ 58 (195)
+++++ -...+...+...+. .+.-+..++|+|++|+||||+++.|++.+..
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~-~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALD-NNRLAHAYLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred CHHHccCcHHHHHHHHHHHH-cCCCCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence 34444 23333334443333 3445567899999999999999999998853
No 374
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.14 E-value=0.00091 Score=52.26 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=26.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh------CCceeehH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY------CLCHLATG 64 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~------~~~~i~~d 64 (195)
+++..++|+|+||||||+++.+++... ++.+++.+
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e 57 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE 57 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec
Confidence 456699999999999999998765432 35577664
No 375
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.14 E-value=0.00045 Score=54.55 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.++-.+.|.||+||||||+.+.++--
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45668999999999999999998763
No 376
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.14 E-value=0.00045 Score=52.54 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|+.||||||+.+.|+-.+
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998644
No 377
>CHL00176 ftsH cell division protein; Validated
Probab=97.14 E-value=0.00053 Score=61.62 Aligned_cols=34 Identities=35% Similarity=0.517 Sum_probs=29.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
+.|+-++|.||||+|||++++.++...+.+++..
T Consensus 214 ~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 214 KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 3355699999999999999999999998776655
No 378
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.13 E-value=0.0043 Score=53.64 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=29.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh-----C--CceeehHHHHHHH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEY-----C--LCHLATGDMLRAA 70 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~-----~--~~~i~~d~l~r~~ 70 (195)
-++|.|++|+|||++++.+++++ + +.+++..++..+.
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~ 193 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDF 193 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 58999999999999999999876 2 4577876665443
No 379
>COG3911 Predicted ATPase [General function prediction only]
Probab=97.12 E-value=0.00044 Score=50.50 Aligned_cols=25 Identities=40% Similarity=0.631 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCL 58 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~ 58 (195)
++++|+|.||+||||+...|+.. |+
T Consensus 10 ~~fIltGgpGaGKTtLL~aLa~~-Gf 34 (183)
T COG3911 10 KRFILTGGPGAGKTTLLAALARA-GF 34 (183)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHc-Cc
Confidence 47999999999999999999885 44
No 380
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.12 E-value=0.00047 Score=53.29 Aligned_cols=27 Identities=37% Similarity=0.562 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+-.+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456799999999999999999998754
No 381
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.11 E-value=0.00032 Score=52.85 Aligned_cols=31 Identities=23% Similarity=0.128 Sum_probs=24.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh-----CCceeehH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEY-----CLCHLATG 64 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~-----~~~~i~~d 64 (195)
+++|.|+||+|||+++..++... .+.+++.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 47899999999999998876644 35677763
No 382
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0058 Score=55.32 Aligned_cols=108 Identities=22% Similarity=0.381 Sum_probs=64.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehH--HHHHHHHHcCChHHHHHHHHHHcC-----------------------
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATG--DMLRAAVAAKTPLGIKAKEAMDKG----------------------- 88 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d--~l~r~~~~~~~~~~~~~~~~~~~~----------------------- 88 (195)
=|++.||||+|||-+|++++-++...++|+. +++-..+.+-.. .+++.+++.
T Consensus 707 GILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~---NVR~VFerAR~A~PCVIFFDELDSlAP~RG~s 783 (953)
T KOG0736|consen 707 GILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEE---NVREVFERARSAAPCVIFFDELDSLAPNRGRS 783 (953)
T ss_pred eeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHH---HHHHHHHHhhccCCeEEEeccccccCccCCCC
Confidence 3999999999999999999999999888872 455444432211 111222111
Q ss_pred ---CCCCHHHHHHHHHHHHcCCC---CCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHH
Q 029307 89 ---ELVSDDLVVGIIDEAMKKPS---CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDA 150 (195)
Q Consensus 89 ---~~~~~~~~~~~l~~~l~~~~---~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e 150 (195)
+-+-|.++.++ ...+..+. ....|||-..++.--- ...+ .....+|..+|+..+.+
T Consensus 784 GDSGGVMDRVVSQL-LAELDgls~~~s~~VFViGATNRPDLL----DpAL-LRPGRFDKLvyvG~~~d 845 (953)
T KOG0736|consen 784 GDSGGVMDRVVSQL-LAELDGLSDSSSQDVFVIGATNRPDLL----DPAL-LRPGRFDKLVYVGPNED 845 (953)
T ss_pred CCccccHHHHHHHH-HHHhhcccCCCCCceEEEecCCCcccc----Chhh-cCCCccceeEEecCCcc
Confidence 11223333333 34454443 2347888877665322 2222 23467999999987763
No 383
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.11 E-value=0.00048 Score=53.43 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|++||||||+.+.|+-.+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 456799999999999999999998754
No 384
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.11 E-value=0.00048 Score=53.40 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998754
No 385
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.10 E-value=0.00054 Score=55.64 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+.+|+|+||+|+||||++..|+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999988765
No 386
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.10 E-value=0.007 Score=51.99 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=25.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh-------CCceeehHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY-------CLCHLATGD 65 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~-------~~~~i~~d~ 65 (195)
+.+|+|+||+|+||||++..|+..+ .+.+++.|.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4589999999999999888887644 245666644
No 387
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=97.09 E-value=0.00052 Score=57.85 Aligned_cols=27 Identities=22% Similarity=0.253 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
+|.+|+|+|.+||||||+++.|...+.
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999999998775
No 388
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.09 E-value=0.016 Score=48.17 Aligned_cols=129 Identities=16% Similarity=0.151 Sum_probs=63.4
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh----HHH-HHHHHHcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT----GDM-LRAAVAAKT-PLGIKAKEAMDKGELVSDDLVVGIIDE 102 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~----d~l-~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (195)
++-+.-++|.|++|+||+|+|..+++.+.+..-.. +.. -...+..+. +....+.. ...+..+.-+.+.++...
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~-~~~~~~i~id~iR~l~~~ 97 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEP-EEADKTIKVDQVRELVSF 97 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEec-cCCCCCCCHHHHHHHHHH
Confidence 34456799999999999999999999886532110 000 000000000 00000000 000122344445554433
Q ss_pred HHcCC-C-CCCcEEEeCCC-CCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcC
Q 029307 103 AMKKP-S-CQKGFILDGFP-RTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (195)
Q Consensus 103 ~l~~~-~-~~~~~iid~~~-~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R 159 (195)
..... . ..+.+|||..- .+......|.+.+.+..... .+|.+.-.++.+..=+..|
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~-~fiL~t~~~~~ll~TI~SR 156 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDT-VLLLISHQPSRLLPTIKSR 156 (328)
T ss_pred HhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCe-EEEEEECChhhCcHHHHhh
Confidence 33222 1 23467777543 46667777888887754433 4444444444333333333
No 389
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.09 E-value=0.00052 Score=53.97 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=24.0
Q ss_pred ccCCCCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 26 KCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 26 ~~~~~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
.+.-.++-++.|.|.+||||||+++.|+-
T Consensus 27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 27 SLEIERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 33335567999999999999999999876
No 390
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.08 E-value=0.00054 Score=52.91 Aligned_cols=27 Identities=33% Similarity=0.561 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+-.+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456799999999999999999998754
No 391
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.08 E-value=0.00057 Score=62.57 Aligned_cols=34 Identities=29% Similarity=0.579 Sum_probs=28.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
..+..|+|.||||+||||+++.+++.++..++.+
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~~~~~i~i 243 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISI 243 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Confidence 4456799999999999999999999998665543
No 392
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.08 E-value=0.00048 Score=58.90 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=27.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh---C--Cceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~---~--~~~i~~ 63 (195)
.+|.+|+++|++||||||.+..|+..+ | +..++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 446799999999999999999999766 3 345566
No 393
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.08 E-value=0.00054 Score=53.02 Aligned_cols=27 Identities=30% Similarity=0.519 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|++||||||+.+.|+-.+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998754
No 394
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.08 E-value=0.00055 Score=52.83 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|+.||||||+.+.|+-.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998643
No 395
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.08 E-value=0.0014 Score=51.48 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=27.7
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh-----CCceeehH
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATG 64 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~-----~~~~i~~d 64 (195)
-+++.+++|+|+||||||+++..++... ...+++.+
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 3556799999999999999999986543 24566663
No 396
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0025 Score=50.76 Aligned_cols=46 Identities=15% Similarity=0.382 Sum_probs=34.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCC--ceeehHHHHHHHHHcCChHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCL--CHLATGDMLRAAVAAKTPLG 78 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~--~~i~~d~l~r~~~~~~~~~~ 78 (195)
.=+++.||||+|||-++++.+.+... ..+.-.++..+.+..+..+.
T Consensus 190 rgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmv 237 (408)
T KOG0727|consen 190 RGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMV 237 (408)
T ss_pred cceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHH
Confidence 34899999999999999999998854 44444577777776654443
No 397
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=97.07 E-value=0.00063 Score=49.94 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
.+-|+|+|++|+||||++..|.++ |+..++-
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~-g~~lvaD 44 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR-GHRLVAD 44 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEEEC
Confidence 356999999999999999988885 6666654
No 398
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.06 E-value=0.00054 Score=50.67 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+|.|+|++||||||++..|...+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999876
No 399
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.06 E-value=0.0045 Score=53.60 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=29.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh-------CCceeehHHHHHHHH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEY-------CLCHLATGDMLRAAV 71 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~-------~~~~i~~d~l~r~~~ 71 (195)
-++|.|++|+|||++++.++..+ .+.+++..+++.+..
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~ 187 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAV 187 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence 48999999999999999998743 346788877665543
No 400
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.05 E-value=0.0016 Score=51.38 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=26.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh---C--CceeehH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATG 64 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~---~--~~~i~~d 64 (195)
+++..++|.|+||||||+++..+.... | ..+++.+
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 456799999999999999998765532 2 5566653
No 401
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.05 E-value=0.00061 Score=52.73 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998643
No 402
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.05 E-value=0.00062 Score=52.66 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998754
No 403
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.05 E-value=0.0073 Score=51.39 Aligned_cols=41 Identities=32% Similarity=0.444 Sum_probs=31.2
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh---C--CceeehHHHHHHH
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAA 70 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~---~--~~~i~~d~l~r~~ 70 (195)
.++|.+|.++|.-||||||.|-.|+..| | .-.++. |.+|..
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaa-D~~RpA 142 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAA-DTYRPA 142 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEec-ccCChH
Confidence 4567799999999999999999998877 3 334555 555544
No 404
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.05 E-value=0.00062 Score=52.60 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+-.+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998654
No 405
>PRK04328 hypothetical protein; Provisional
Probab=97.04 E-value=0.0016 Score=51.88 Aligned_cols=34 Identities=24% Similarity=0.165 Sum_probs=26.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh-----CCceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~-----~~~~i~~ 63 (195)
+++..++|.|+||||||+++..++... ...+++.
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 456799999999999999998866542 2456666
No 406
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.04 E-value=0.0006 Score=53.70 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|++||||||+.+.|+--+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456799999999999999999998643
No 407
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.04 E-value=0.0006 Score=54.67 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=32.1
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhC-----CceeehHHHHHHH
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAA 70 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~-----~~~i~~d~l~r~~ 70 (195)
..+|++|++.|..||||||++++|-.++. --+||+|--.++.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~v 62 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNV 62 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcC
Confidence 45678999999999999999999999883 2356665444443
No 408
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.03 E-value=0.0013 Score=60.18 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+..++|.|+||+|||++++.|++.+
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4468999999999999999999987
No 409
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.03 E-value=0.0006 Score=53.04 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|++||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998643
No 410
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.03 E-value=0.00056 Score=53.73 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 456799999999999999999998643
No 411
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.03 E-value=0.00058 Score=56.87 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=21.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
.++-++.|.||+||||||+.+.|+-
T Consensus 29 ~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3456899999999999999999986
No 412
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.03 E-value=0.00064 Score=52.87 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+-.+
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998654
No 413
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.03 E-value=0.00062 Score=52.37 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456799999999999999999998754
No 414
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.03 E-value=0.00057 Score=52.87 Aligned_cols=27 Identities=41% Similarity=0.570 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|++||||||+.+.|+-.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 456799999999999999999998754
No 415
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.03 E-value=0.00041 Score=57.89 Aligned_cols=49 Identities=20% Similarity=0.541 Sum_probs=32.0
Q ss_pred HHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhC--C--ceeehHHHHH
Q 029307 17 LMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC--L--CHLATGDMLR 68 (195)
Q Consensus 17 ~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~--~--~~i~~d~l~r 68 (195)
++-++++.-++. ++.|+|+||||+|||.+|-.+++.+| . ..++..+++.
T Consensus 38 iiv~mIk~~K~a---Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 38 IIVDMIKEGKIA---GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp HHHHHHHTT--T---T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred HHHHHHhccccc---CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 444455543333 46899999999999999999999997 3 4455555543
No 416
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.03 E-value=0.00064 Score=52.81 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++-+++|+|++||||||+.+.|+--+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998644
No 417
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.03 E-value=0.00063 Score=53.43 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|++||||||+.+.|+-.+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456799999999999999999998754
No 418
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.03 E-value=0.00063 Score=52.26 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|++||||||+.+.|+-.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456799999999999999999998754
No 419
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.02 E-value=0.00065 Score=53.42 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998654
No 420
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0036 Score=54.58 Aligned_cols=35 Identities=31% Similarity=0.488 Sum_probs=31.0
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
++-|+=|+++||||.|||-+|++++-+-|++++..
T Consensus 334 GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~ 368 (752)
T KOG0734|consen 334 GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYA 368 (752)
T ss_pred CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence 56677799999999999999999999999887765
No 421
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.02 E-value=0.00066 Score=53.59 Aligned_cols=27 Identities=30% Similarity=0.535 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|++||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456799999999999999999998644
No 422
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.01 E-value=0.00072 Score=50.93 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|+.||||||+.+.|+..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998643
No 423
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.01 E-value=0.00069 Score=51.19 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=21.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
.++.+++|.|++||||||+.+.+..
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4567999999999999999999863
No 424
>PRK10867 signal recognition particle protein; Provisional
Probab=97.01 E-value=0.00075 Score=57.93 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=26.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh----C--CceeehH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY----C--LCHLATG 64 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~----~--~~~i~~d 64 (195)
.+|.+|+++|++||||||++..|+..+ | +..++.|
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 446799999999999999877777654 3 3466663
No 425
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.01 E-value=0.0007 Score=52.91 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|++||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456799999999999999999998765
No 426
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.01 E-value=0.00062 Score=52.60 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
++ +++|.|++||||||+.+.|+--+
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 46 89999999999999999998643
No 427
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.01 E-value=0.0033 Score=53.07 Aligned_cols=34 Identities=29% Similarity=0.532 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhC-------CceeehHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYC-------LCHLATGD 65 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~-------~~~i~~d~ 65 (195)
+.+|.|+||.|+||||....|+.+|. +-.|+.|.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt 243 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT 243 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEecc
Confidence 67999999999999998888888874 45677754
No 428
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.01 E-value=0.0014 Score=60.38 Aligned_cols=32 Identities=31% Similarity=0.354 Sum_probs=27.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i 61 (195)
.++.+++|.||||+||||+++.+++.++..++
T Consensus 347 ~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~ 378 (784)
T PRK10787 347 IKGPILCLVGPPGVGKTSLGQSIAKATGRKYV 378 (784)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 35668999999999999999999999886654
No 429
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.01 E-value=0.00064 Score=52.88 Aligned_cols=27 Identities=37% Similarity=0.480 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|+.||||||+.+.|+-.+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998754
No 430
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.01 E-value=0.00082 Score=51.79 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=27.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh-----CCceeehH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATG 64 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~-----~~~~i~~d 64 (195)
++..++.|+|+||||||++|..++... ...+++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 456799999999999999999988654 25666664
No 431
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.00 E-value=0.00071 Score=52.94 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|++||||||+.+.|+--+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456799999999999999999998643
No 432
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.00 E-value=0.0097 Score=51.87 Aligned_cols=113 Identities=17% Similarity=0.140 Sum_probs=70.4
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCC---ceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCL---CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 105 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~---~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 105 (195)
.+.|.+|++.|..+|||....+.|.+.++- .+++...- . ..+.--..+.....
T Consensus 296 ~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~~~P----------t--------------~~E~~~~~lwRf~~ 351 (493)
T TIGR03708 296 RKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPIAAP----------T--------------DEEKAQHYLWRFWR 351 (493)
T ss_pred CCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeCCCc----------C--------------HHHHcCcHHHHHHH
Confidence 677889999999999999999999998853 44433110 0 00011111222222
Q ss_pred CCC-CCCcEEEe-------------CCCC------CHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCC
Q 029307 106 KPS-CQKGFILD-------------GFPR------TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSS 165 (195)
Q Consensus 106 ~~~-~~~~~iid-------------~~~~------~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~ 165 (195)
.+. .+...|+| |+.. ...+...|++.|...|..+ +-+||.++.++..+|+.+|..++..
T Consensus 352 ~lP~~G~i~iFdRSwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~i-vKf~LhIsk~EQ~~R~~~r~~~p~k 430 (493)
T TIGR03708 352 HIPRRGRITIFDRSWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIV-VKFWLHIDKEEQLRRFEERENTPFK 430 (493)
T ss_pred hCCCCCeEEEEcCCccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEE-EEEEEEcCHHHHHHHHHHHhcCCcc
Confidence 222 12233333 2211 2233455667777788777 9999999999999999999876554
Q ss_pred C
Q 029307 166 G 166 (195)
Q Consensus 166 g 166 (195)
.
T Consensus 431 ~ 431 (493)
T TIGR03708 431 R 431 (493)
T ss_pred C
Confidence 3
No 433
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.00 E-value=0.00068 Score=51.28 Aligned_cols=27 Identities=33% Similarity=0.562 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|+.||||||+.+.|+-.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 356699999999999999999998754
No 434
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.00 E-value=0.0012 Score=53.23 Aligned_cols=83 Identities=13% Similarity=0.097 Sum_probs=46.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH--hC-----CceeehHHHHHHHHHcCChHHHHHHHHHHcC-----CCCCHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE--YC-----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDDLVV 97 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~--~~-----~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 97 (195)
....+|+|.|++|+||||+|..+++. .. +..++...-.. .......+...+... .........
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~-----~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 91 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPS-----LEQLLEQILRQLGEPDSSISDPKDIEELQ 91 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SC-----CHHHHHHHHHHHTCC-STSSCCSSHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccc-----ccccccccccccccccccccccccccccc
Confidence 45679999999999999999999877 21 22333311100 000112222233222 223445566
Q ss_pred HHHHHHHcCCCCCCcEEEeCCC
Q 029307 98 GIIDEAMKKPSCQKGFILDGFP 119 (195)
Q Consensus 98 ~~l~~~l~~~~~~~~~iid~~~ 119 (195)
..+...+... ...+|+|+..
T Consensus 92 ~~l~~~L~~~--~~LlVlDdv~ 111 (287)
T PF00931_consen 92 DQLRELLKDK--RCLLVLDDVW 111 (287)
T ss_dssp HHHHHHHCCT--SEEEEEEEE-
T ss_pred ccchhhhccc--cceeeeeeec
Confidence 6677776654 3467888764
No 435
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.00 E-value=0.00067 Score=52.92 Aligned_cols=27 Identities=41% Similarity=0.441 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+-.+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998654
No 436
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.00 E-value=0.00059 Score=53.37 Aligned_cols=25 Identities=20% Similarity=0.456 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
+.|..++|.|+||+||||+|+.|..
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCC
Confidence 4467899999999999999999974
No 437
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.99 E-value=0.00069 Score=51.71 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
.++.+++|+|++||||||+.+.|+-
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4567999999999999999999985
No 438
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.99 E-value=0.00077 Score=50.26 Aligned_cols=27 Identities=33% Similarity=0.714 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|+.||||||+++.|+-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456799999999999999999998754
No 439
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.99 E-value=0.00079 Score=50.04 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
++|.|+|++||||||++..|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999987
No 440
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.99 E-value=0.00072 Score=53.33 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998754
No 441
>PRK13768 GTPase; Provisional
Probab=96.99 E-value=0.00071 Score=54.08 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+++|+|.|++||||||++..++..+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHH
Confidence 3689999999999999999888766
No 442
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.0038 Score=52.32 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=32.2
Q ss_pred HHHHHHHHH-------hcccCCCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 15 VDLMTELLR-------RMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 15 ~~~~~~~~~-------~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
..+++++.+ .+.....+|.+|.++|..||||||.|..|+-.|
T Consensus 77 ~~vf~eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~ 125 (483)
T KOG0780|consen 77 KAVFDELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYY 125 (483)
T ss_pred HHHHHHHHHHhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHH
Confidence 445555555 333335667799999999999999999999988
No 443
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.99 E-value=0.00074 Score=53.16 Aligned_cols=27 Identities=33% Similarity=0.683 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|++||||||+.+.|+-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456799999999999999999998643
No 444
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.98 E-value=0.00074 Score=53.92 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+++.+++|.||.||||||+.+.|+.-+
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 456799999999999999999998855
No 445
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.98 E-value=0.00069 Score=49.18 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|++.|++||||||+...|...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999998764
No 446
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.98 E-value=0.00079 Score=50.69 Aligned_cols=27 Identities=30% Similarity=0.581 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 456789999999999999999998754
No 447
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.98 E-value=0.011 Score=50.70 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+.+|+|+|+.|+||||+...|+..+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998764
No 448
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.97 E-value=0.00088 Score=52.00 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=28.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh-----CCceeehH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATG 64 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~-----~~~~i~~d 64 (195)
.++.++.|+|+|||||||++..++... ...+++.+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 456799999999999999999998765 34567653
No 449
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.97 E-value=0.006 Score=48.81 Aligned_cols=41 Identities=29% Similarity=0.511 Sum_probs=32.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh---C--CceeehHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAAV 71 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~---~--~~~i~~d~l~r~~~ 71 (195)
.+.-++|.|+||+|||.++.+|+..+ | +.++.+.+++++..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk 149 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLK 149 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 45679999999999999999988876 3 45667777766553
No 450
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.97 E-value=0.00079 Score=51.44 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++-+++|.|++||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356699999999999999999998854
No 451
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.00079 Score=52.38 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998643
No 452
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.00077 Score=52.87 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|+.||||||+.+.|+..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998765
No 453
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.96 E-value=0.00086 Score=50.27 Aligned_cols=27 Identities=37% Similarity=0.688 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 456799999999999999999998754
No 454
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.016 Score=48.64 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCC
Q 029307 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (195)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~ 58 (195)
.++...+...+. .++-+.-++|+|++|+||||++..+++.+..
T Consensus 29 ~~a~~~L~~a~~-~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 29 EEAEAFLAQAYR-EGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHHH-cCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 344444444444 2344557999999999999999999998855
No 455
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.96 E-value=0.00088 Score=57.44 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=27.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh----C--CceeehH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY----C--LCHLATG 64 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~----~--~~~i~~d 64 (195)
.+|.+|+++|++||||||++..|+..+ | +..++.|
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 447799999999999999988887764 2 4456663
No 456
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.96 E-value=0.00085 Score=50.32 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|++||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998754
No 457
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.95 E-value=0.00079 Score=52.72 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|++||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998654
No 458
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.95 E-value=0.00079 Score=53.08 Aligned_cols=26 Identities=38% Similarity=0.533 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.++.+++|+|++||||||+.+.|+-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45679999999999999999999875
No 459
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.95 E-value=0.00086 Score=51.46 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+-.+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456799999999999999999998754
No 460
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.95 E-value=0.00087 Score=51.07 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=24.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh----CCceeeh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY----CLCHLAT 63 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~----~~~~i~~ 63 (195)
..|.|.||||||||++...+.+.+ .+-+|.-
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~ 48 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITG 48 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEec
Confidence 589999999999999887766655 4555554
No 461
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.95 E-value=0.0008 Score=52.78 Aligned_cols=27 Identities=37% Similarity=0.404 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|+.||||||+.+.|+-.+
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999999999999999998743
No 462
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.95 E-value=0.0014 Score=59.84 Aligned_cols=33 Identities=36% Similarity=0.447 Sum_probs=27.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
+...++|.||||+||||+++.+++..+..++.+
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~l 83 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANHTRAHFSSL 83 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCcceee
Confidence 334689999999999999999999887665554
No 463
>PRK05642 DNA replication initiation factor; Validated
Probab=96.95 E-value=0.0013 Score=51.95 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=29.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh-----CCceeehHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLR 68 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~-----~~~~i~~d~l~r 68 (195)
..++|.|++|+|||++++.++..+ .+.|++.++++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~ 86 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD 86 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh
Confidence 468999999999999999987643 467888877654
No 464
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.94 E-value=0.00085 Score=52.13 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|+.||||||+.+.|+.-+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 346799999999999999999998643
No 465
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.94 E-value=0.00085 Score=53.59 Aligned_cols=27 Identities=30% Similarity=0.505 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++-+++|+|++||||||+.+.|+-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998643
No 466
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.94 E-value=0.00085 Score=53.03 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+++.|+-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998754
No 467
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.93 E-value=0.0014 Score=57.12 Aligned_cols=52 Identities=13% Similarity=0.049 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHh---C--CceeehHH
Q 029307 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGD 65 (195)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~---~--~~~i~~d~ 65 (195)
.+.-++++.+...=.-.++..++|.|+||+||||++..++... | ..|++.++
T Consensus 245 ~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eE 301 (484)
T TIGR02655 245 VSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEE 301 (484)
T ss_pred cCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 3445556666544234566799999999999999999988755 2 56776643
No 468
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.93 E-value=0.00081 Score=53.47 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998765
No 469
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.93 E-value=0.00087 Score=53.16 Aligned_cols=27 Identities=37% Similarity=0.510 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|++||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456799999999999999999998654
No 470
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.93 E-value=0.00091 Score=49.73 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++-+++|.|++||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998644
No 471
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.93 E-value=0.0009 Score=51.44 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
-.++.+++|+|++||||||+.+.|+-.+
T Consensus 28 i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 3567799999999999999999998754
No 472
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.93 E-value=0.00087 Score=53.18 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|++||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 456799999999999999999998653
No 473
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.93 E-value=0.00088 Score=52.88 Aligned_cols=27 Identities=26% Similarity=0.492 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++-+++|.|++||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998654
No 474
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.93 E-value=0.00097 Score=49.90 Aligned_cols=27 Identities=41% Similarity=0.765 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+-.+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 456799999999999999999998865
No 475
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.00092 Score=54.73 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=25.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCcee
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i 61 (195)
.|++.||.|||||-+|+-|++.+++++-
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~LnVPFa 126 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKILNVPFA 126 (408)
T ss_pred cEEEECCCCCcHHHHHHHHHHHhCCCee
Confidence 6999999999999999999999998754
No 476
>PHA03133 thymidine kinase; Provisional
Probab=96.92 E-value=0.058 Score=45.03 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
..|+|.|+.|.||||+++.+....+
T Consensus 41 ~rvYlDG~~GvGKTTt~~~l~~a~~ 65 (368)
T PHA03133 41 LRIYVDGPHGLGKTTTAAALAAALG 65 (368)
T ss_pred EEEEEeCCCcCCHHHHHHHHHHhhC
Confidence 3699999999999999988888775
No 477
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.92 E-value=0.00091 Score=52.29 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++-+++|+|+.||||||+.+.|+-.+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 456799999999999999999998754
No 478
>PRK04296 thymidine kinase; Provisional
Probab=96.92 E-value=0.00087 Score=51.18 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+++++|++|+||||++-.++..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Confidence 589999999999999998888776
No 479
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.92 E-value=0.00093 Score=48.69 Aligned_cols=27 Identities=41% Similarity=0.623 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 456799999999999999999998754
No 480
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.92 E-value=0.00091 Score=52.39 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++-+++|.|+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998643
No 481
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.91 E-value=0.00089 Score=52.33 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|++||||||+.+.|+..+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 456799999999999999999998654
No 482
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.00099 Score=56.09 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+|+|+||+|+||||++.+|+..+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999998754
No 483
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.91 E-value=0.013 Score=52.75 Aligned_cols=42 Identities=26% Similarity=0.342 Sum_probs=30.3
Q ss_pred HHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 17 LMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 17 ~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
+...+...+. .+.-+..++|.|++|+||||++..+++.+++.
T Consensus 25 ~~~~L~~~i~-~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~ 66 (614)
T PRK14971 25 LTTTLKNAIA-TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQ 66 (614)
T ss_pred HHHHHHHHHH-cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3333434333 34455679999999999999999999988653
No 484
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.91 E-value=0.00096 Score=51.51 Aligned_cols=27 Identities=37% Similarity=0.545 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|++||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998754
No 485
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.91 E-value=0.001 Score=50.25 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+..+
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998754
No 486
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=96.91 E-value=0.0021 Score=47.03 Aligned_cols=29 Identities=21% Similarity=0.112 Sum_probs=21.4
Q ss_pred hhcCCC-cCEEEEEEcCHHHHHHHHhcCCC
Q 029307 133 EKQGKK-VDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 133 ~~~~~~-~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
...-.. ||++|||++|++++.+|+.+|+.
T Consensus 61 ~~~~~~~pdl~IYL~~~~e~~~~RI~kRgR 90 (146)
T PF01712_consen 61 IEEIPKSPDLIIYLDASPETCLERIKKRGR 90 (146)
T ss_dssp HHHCCHH-SEEEEEE--HHHHHHHHHHCTT
T ss_pred HHHhhccCCeEEEEeCCHHHHHHHHHHhCC
Confidence 333455 99999999999999999999943
No 487
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.91 E-value=0.00093 Score=52.22 Aligned_cols=26 Identities=35% Similarity=0.374 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999999754
No 488
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.91 E-value=0.0009 Score=53.50 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.++-+++|+|++||||||+.+.|+-.
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45679999999999999999999854
No 489
>PRK10908 cell division protein FtsE; Provisional
Probab=96.91 E-value=0.00096 Score=51.98 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998754
No 490
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.90 E-value=0.00095 Score=50.47 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+-.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998755
No 491
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.90 E-value=0.0015 Score=56.19 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
+..|+|.|+||+|||++|+.|+..++
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 35688899999999999999999874
No 492
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.90 E-value=0.00098 Score=51.36 Aligned_cols=26 Identities=35% Similarity=0.440 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.++.+++|+|++||||||+.+.|+--
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45679999999999999999999864
No 493
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.90 E-value=0.00089 Score=53.44 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
-.++.+++|.|++||||||+++.|+..+
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 29 LYPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567799999999999999999998754
No 494
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.0021 Score=54.54 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=27.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh---C--CceeehH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATG 64 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~---~--~~~i~~d 64 (195)
.++.+|+|+|+.||||||++..|+..+ | +-+++.|
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 345789999999999999999998766 2 3455653
No 495
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.90 E-value=0.00093 Score=52.44 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
-.++.+++|+|++||||||+.+.|+-.+
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456799999999999999999998754
No 496
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.89 E-value=0.00098 Score=52.35 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|+.||||||+.+.|+-.+
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998654
No 497
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.89 E-value=0.00096 Score=53.05 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|++||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998754
No 498
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.89 E-value=0.00099 Score=52.54 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|++||||||+.+.|+-.+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998754
No 499
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.89 E-value=0.00099 Score=52.56 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999999998754
No 500
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.88 E-value=0.001 Score=51.70 Aligned_cols=27 Identities=26% Similarity=0.560 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+-..
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 456799999999999999999998754
Done!