Query 029307
Match_columns 195
No_of_seqs 111 out of 1267
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 17:39:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tlx_A Adenylate kinase 2; str 100.0 3.1E-34 1.1E-38 226.3 20.7 183 7-189 4-186 (243)
2 3gmt_A Adenylate kinase; ssgci 100.0 1.4E-33 4.6E-38 219.8 18.8 158 33-194 9-168 (230)
3 3sr0_A Adenylate kinase; phosp 100.0 7.9E-32 2.7E-36 207.6 19.7 142 33-177 1-142 (206)
4 3dl0_A Adenylate kinase; phosp 100.0 6.9E-30 2.3E-34 197.4 18.5 157 33-189 1-157 (216)
5 3fb4_A Adenylate kinase; psych 100.0 2.1E-29 7.1E-34 194.6 19.9 157 33-189 1-157 (216)
6 3be4_A Adenylate kinase; malar 100.0 3.6E-29 1.2E-33 193.9 19.1 161 30-190 3-163 (217)
7 1ak2_A Adenylate kinase isoenz 100.0 5.7E-28 2E-32 189.0 21.5 161 29-189 13-173 (233)
8 2xb4_A Adenylate kinase; ATP-b 100.0 2E-27 6.9E-32 184.9 17.8 157 33-190 1-159 (223)
9 1aky_A Adenylate kinase; ATP:A 100.0 7.9E-27 2.7E-31 180.8 21.0 159 30-189 2-162 (220)
10 3umf_A Adenylate kinase; rossm 99.9 1E-26 3.5E-31 180.1 17.1 146 13-162 10-156 (217)
11 1e4v_A Adenylate kinase; trans 99.9 2.3E-26 7.8E-31 177.6 16.5 154 33-190 1-154 (214)
12 1zd8_A GTP:AMP phosphotransfer 99.9 1.3E-24 4.6E-29 169.1 18.3 155 30-190 5-159 (227)
13 1zak_A Adenylate kinase; ATP:A 99.9 1.9E-23 6.6E-28 161.9 15.4 148 30-181 3-151 (222)
14 2cdn_A Adenylate kinase; phosp 99.9 1.1E-21 3.8E-26 149.7 17.4 132 29-160 17-148 (201)
15 3cm0_A Adenylate kinase; ATP-b 99.8 3.7E-20 1.2E-24 139.2 15.2 125 31-160 3-127 (186)
16 1qf9_A UMP/CMP kinase, protein 99.8 1.5E-19 5.2E-24 136.1 17.3 129 31-161 5-133 (194)
17 2c95_A Adenylate kinase 1; tra 99.8 1.1E-19 3.6E-24 137.5 16.1 126 31-160 8-134 (196)
18 2bwj_A Adenylate kinase 5; pho 99.8 2.4E-19 8.1E-24 135.9 16.3 126 32-161 12-138 (199)
19 1ukz_A Uridylate kinase; trans 99.8 4.9E-19 1.7E-23 135.0 14.6 128 29-160 12-142 (203)
20 1tev_A UMP-CMP kinase; ploop, 99.8 1E-18 3.6E-23 131.7 16.2 128 32-160 3-135 (196)
21 2bbw_A Adenylate kinase 4, AK4 99.8 3.8E-18 1.3E-22 134.1 19.5 155 30-190 25-179 (246)
22 3lw7_A Adenylate kinase relate 99.7 2.2E-16 7.4E-21 116.6 14.9 119 33-161 2-124 (179)
23 1ly1_A Polynucleotide kinase; 99.7 1.3E-15 4.3E-20 113.4 13.5 122 32-162 2-129 (181)
24 3t61_A Gluconokinase; PSI-biol 99.6 4.5E-15 1.5E-19 112.9 11.3 116 30-162 16-134 (202)
25 2rhm_A Putative kinase; P-loop 99.6 1.2E-14 4.2E-19 109.3 12.6 124 30-161 3-127 (193)
26 1ltq_A Polynucleotide kinase; 99.5 1E-13 3.5E-18 111.5 14.3 128 32-163 2-130 (301)
27 2pbr_A DTMP kinase, thymidylat 99.5 9E-14 3.1E-18 104.4 12.5 117 33-159 1-143 (195)
28 2vli_A Antibiotic resistance p 99.5 3.3E-13 1.1E-17 100.6 12.8 117 31-161 4-127 (183)
29 2pt5_A Shikimate kinase, SK; a 99.5 1.5E-13 5.3E-18 101.1 10.5 110 33-160 1-114 (168)
30 1kht_A Adenylate kinase; phosp 99.5 2.3E-13 7.9E-18 101.9 10.7 120 32-161 3-140 (192)
31 2z0h_A DTMP kinase, thymidylat 99.5 8.3E-13 2.9E-17 99.4 13.2 119 33-159 1-142 (197)
32 3vaa_A Shikimate kinase, SK; s 99.5 1.8E-13 6.3E-18 103.9 9.5 113 30-159 23-139 (199)
33 1gvn_B Zeta; postsegregational 99.5 6.6E-14 2.3E-18 112.5 7.3 138 15-160 13-163 (287)
34 1y63_A LMAJ004144AAA protein; 99.5 1.6E-13 5.4E-18 103.1 8.9 113 29-161 7-123 (184)
35 2p5t_B PEZT; postsegregational 99.5 1.2E-13 4E-18 108.9 7.6 124 29-160 29-158 (253)
36 3zvl_A Bifunctional polynucleo 99.5 4.7E-13 1.6E-17 112.8 11.7 105 29-161 255-359 (416)
37 4eaq_A DTMP kinase, thymidylat 99.4 1.2E-12 4.2E-17 101.8 13.0 125 29-160 23-170 (229)
38 1nks_A Adenylate kinase; therm 99.4 2.9E-13 9.8E-18 101.5 8.6 117 33-160 2-140 (194)
39 3a4m_A L-seryl-tRNA(SEC) kinas 99.4 3.5E-13 1.2E-17 106.7 9.4 114 31-160 3-121 (260)
40 3kb2_A SPBC2 prophage-derived 99.4 6.5E-13 2.2E-17 97.9 10.2 100 33-160 2-116 (173)
41 2wwf_A Thymidilate kinase, put 99.4 1.1E-14 3.8E-19 111.2 0.5 125 30-159 8-151 (212)
42 1knq_A Gluconate kinase; ALFA/ 99.4 5.3E-12 1.8E-16 93.6 14.3 114 30-162 6-127 (175)
43 2iyv_A Shikimate kinase, SK; t 99.4 4.2E-13 1.4E-17 100.4 8.3 110 33-160 3-115 (184)
44 2plr_A DTMP kinase, probable t 99.4 5.8E-13 2E-17 101.3 9.0 115 31-160 3-144 (213)
45 1e6c_A Shikimate kinase; phosp 99.4 4.8E-12 1.6E-16 93.4 13.3 109 33-159 3-116 (173)
46 1vht_A Dephospho-COA kinase; s 99.4 4.6E-13 1.6E-17 102.9 7.7 118 31-160 3-147 (218)
47 1jjv_A Dephospho-COA kinase; P 99.4 2.2E-12 7.4E-17 98.2 11.4 116 33-160 3-145 (206)
48 2f6r_A COA synthase, bifunctio 99.4 9.4E-13 3.2E-17 105.4 9.4 120 30-160 73-221 (281)
49 4eun_A Thermoresistant glucoki 99.4 5.8E-12 2E-16 95.6 13.1 116 30-163 27-149 (200)
50 2if2_A Dephospho-COA kinase; a 99.4 8.3E-13 2.9E-17 100.3 7.8 116 33-159 2-144 (204)
51 3iij_A Coilin-interacting nucl 99.4 2E-13 7E-18 101.8 3.9 109 31-160 10-118 (180)
52 4i1u_A Dephospho-COA kinase; s 99.4 5E-12 1.7E-16 97.0 11.7 115 34-160 11-153 (210)
53 1zuh_A Shikimate kinase; alpha 99.4 9.8E-13 3.4E-17 97.0 7.2 105 33-159 8-117 (168)
54 1cke_A CK, MSSA, protein (cyti 99.4 4.6E-12 1.6E-16 97.6 11.3 115 32-157 5-159 (227)
55 1nn5_A Similar to deoxythymidy 99.4 5.2E-13 1.8E-17 101.9 5.8 124 30-159 7-150 (215)
56 3trf_A Shikimate kinase, SK; a 99.4 1.7E-11 5.7E-16 91.6 13.8 109 32-156 5-115 (185)
57 2v54_A DTMP kinase, thymidylat 99.4 2.3E-12 7.7E-17 97.7 8.9 115 31-154 3-137 (204)
58 4edh_A DTMP kinase, thymidylat 99.3 8.4E-12 2.9E-16 96.1 10.6 120 31-160 5-153 (213)
59 1uj2_A Uridine-cytidine kinase 99.3 6.9E-13 2.4E-17 104.4 4.5 116 29-160 19-172 (252)
60 2grj_A Dephospho-COA kinase; T 99.3 1E-11 3.4E-16 94.2 10.8 41 33-73 13-53 (192)
61 1uf9_A TT1252 protein; P-loop, 99.3 8E-12 2.7E-16 94.5 9.9 118 29-160 5-146 (203)
62 1qhx_A CPT, protein (chloramph 99.3 2.4E-11 8.3E-16 90.0 12.4 120 32-161 3-135 (178)
63 4hlc_A DTMP kinase, thymidylat 99.3 6.9E-11 2.3E-15 90.4 15.0 119 33-161 3-147 (205)
64 3lv8_A DTMP kinase, thymidylat 99.3 7.7E-12 2.6E-16 97.7 8.8 124 31-160 26-176 (236)
65 3ake_A Cytidylate kinase; CMP 99.3 4.7E-11 1.6E-15 90.5 13.0 38 34-71 4-41 (208)
66 1via_A Shikimate kinase; struc 99.3 1.9E-12 6.5E-17 96.1 4.9 108 34-160 6-114 (175)
67 3v9p_A DTMP kinase, thymidylat 99.3 1.4E-11 4.8E-16 95.7 9.2 121 30-160 23-173 (227)
68 1kag_A SKI, shikimate kinase I 99.3 3.2E-11 1.1E-15 89.0 10.2 112 32-160 4-118 (173)
69 2jaq_A Deoxyguanosine kinase; 99.3 3.1E-11 1E-15 91.2 10.1 30 33-62 1-30 (205)
70 2yvu_A Probable adenylyl-sulfa 99.2 9.1E-11 3.1E-15 87.8 12.0 110 30-157 11-131 (186)
71 4tmk_A Protein (thymidylate ki 99.2 3.4E-11 1.2E-15 92.7 9.5 122 32-160 3-154 (213)
72 2axn_A 6-phosphofructo-2-kinas 99.2 9E-12 3.1E-16 107.7 6.5 126 30-162 33-171 (520)
73 1q3t_A Cytidylate kinase; nucl 99.2 8.7E-11 3E-15 91.4 10.5 42 29-70 13-54 (236)
74 2pez_A Bifunctional 3'-phospho 99.2 1.4E-10 4.7E-15 86.3 10.9 113 30-159 3-125 (179)
75 4e22_A Cytidylate kinase; P-lo 99.2 1.2E-10 4.2E-15 91.6 11.1 42 30-71 25-66 (252)
76 3ld9_A DTMP kinase, thymidylat 99.2 3.1E-11 1.1E-15 93.4 7.4 121 29-156 18-163 (223)
77 3nwj_A ATSK2; P loop, shikimat 99.2 1.7E-10 5.8E-15 90.8 11.0 112 32-159 48-162 (250)
78 3hjn_A DTMP kinase, thymidylat 99.2 1.8E-10 6.2E-15 87.5 10.4 118 33-160 1-143 (197)
79 1m7g_A Adenylylsulfate kinase; 99.2 1.8E-10 6.1E-15 88.1 10.1 115 29-156 22-149 (211)
80 3uie_A Adenylyl-sulfate kinase 99.1 4E-10 1.4E-14 85.4 11.1 113 29-156 22-140 (200)
81 2h92_A Cytidylate kinase; ross 99.1 6.2E-11 2.1E-15 90.8 6.6 39 32-70 3-41 (219)
82 3fdi_A Uncharacterized protein 99.1 2E-10 7E-15 87.5 8.3 38 32-70 6-43 (201)
83 2qt1_A Nicotinamide riboside k 99.1 1.2E-11 4.3E-16 94.1 1.3 118 30-161 19-152 (207)
84 3hdt_A Putative kinase; struct 99.1 5.3E-10 1.8E-14 86.6 9.5 41 31-72 13-53 (223)
85 2qor_A Guanylate kinase; phosp 99.1 1.9E-10 6.6E-15 87.4 7.0 28 30-57 10-37 (204)
86 3r20_A Cytidylate kinase; stru 99.1 1.3E-09 4.5E-14 84.8 11.8 41 31-71 8-48 (233)
87 2ze6_A Isopentenyl transferase 99.1 2.7E-10 9.4E-15 89.7 7.6 123 33-161 2-140 (253)
88 1x6v_B Bifunctional 3'-phospho 99.1 1.4E-09 4.8E-14 95.5 12.1 114 31-157 51-170 (630)
89 3tmk_A Thymidylate kinase; pho 99.0 4.6E-10 1.6E-14 86.5 6.6 120 31-159 4-147 (216)
90 1rz3_A Hypothetical protein rb 99.0 4.4E-10 1.5E-14 85.3 5.0 132 14-160 3-165 (201)
91 2gks_A Bifunctional SAT/APS ki 99.0 3.1E-09 1.1E-13 92.3 10.9 127 16-157 356-488 (546)
92 1p5z_B DCK, deoxycytidine kina 99.0 2.2E-10 7.4E-15 90.5 3.0 47 12-61 7-54 (263)
93 1m8p_A Sulfate adenylyltransfe 98.9 1.6E-08 5.4E-13 88.3 13.7 128 17-157 381-514 (573)
94 1p6x_A Thymidine kinase; P-loo 98.9 4E-09 1.4E-13 86.1 8.1 28 31-58 6-33 (334)
95 3ch4_B Pmkase, phosphomevalona 98.9 3.4E-08 1.1E-12 75.0 12.5 114 30-156 9-144 (202)
96 2bdt_A BH3686; alpha-beta prot 98.9 2.2E-08 7.4E-13 74.8 10.4 117 33-162 3-125 (189)
97 1gtv_A TMK, thymidylate kinase 98.8 2.6E-10 8.8E-15 86.8 -0.4 26 33-58 1-26 (214)
98 1bif_A 6-phosphofructo-2-kinas 98.8 5.9E-08 2E-12 82.7 12.1 122 30-160 37-173 (469)
99 2vp4_A Deoxynucleoside kinase; 98.8 1.5E-08 5.2E-13 78.4 7.6 29 29-57 17-45 (230)
100 3c8u_A Fructokinase; YP_612366 98.8 1.8E-08 6E-13 76.7 7.2 52 14-65 4-60 (208)
101 2ocp_A DGK, deoxyguanosine kin 98.7 1.5E-07 5.1E-12 73.1 12.5 28 31-58 1-29 (241)
102 3tqc_A Pantothenate kinase; bi 98.7 1E-08 3.4E-13 83.4 5.5 38 29-66 89-133 (321)
103 3asz_A Uridine kinase; cytidin 98.7 2.3E-08 8E-13 75.9 6.5 37 30-66 4-42 (211)
104 4gp7_A Metallophosphoesterase; 98.6 2.8E-07 9.7E-12 67.9 10.7 113 30-160 7-122 (171)
105 1osn_A Thymidine kinase, VZV-T 98.6 3.9E-07 1.3E-11 74.5 10.0 28 31-58 11-39 (341)
106 1sq5_A Pantothenate kinase; P- 98.6 1.5E-07 5.3E-12 75.9 7.6 37 30-66 78-121 (308)
107 3tau_A Guanylate kinase, GMP k 98.5 6.7E-08 2.3E-12 73.6 4.8 28 30-57 6-33 (208)
108 1e2k_A Thymidine kinase; trans 98.5 2.7E-07 9.4E-12 75.2 8.3 27 31-57 3-29 (331)
109 3tr0_A Guanylate kinase, GMP k 98.5 1.1E-06 3.6E-11 66.1 10.5 27 31-57 6-32 (205)
110 1of1_A Thymidine kinase; trans 98.5 7.3E-07 2.5E-11 73.7 10.0 27 31-57 48-74 (376)
111 1ex7_A Guanylate kinase; subst 98.5 4.6E-08 1.6E-12 73.5 2.4 118 35-162 4-138 (186)
112 3cr8_A Sulfate adenylyltranfer 98.5 6.8E-07 2.3E-11 77.7 9.8 128 16-157 353-487 (552)
113 3czq_A Putative polyphosphate 98.4 8.8E-07 3E-11 71.1 7.4 109 30-163 84-215 (304)
114 1a7j_A Phosphoribulokinase; tr 98.3 1.3E-07 4.6E-12 75.7 2.3 38 31-68 4-46 (290)
115 1zp6_A Hypothetical protein AT 98.3 6.5E-07 2.2E-11 66.6 4.2 114 30-161 7-128 (191)
116 3a8t_A Adenylate isopentenyltr 98.2 5.2E-07 1.8E-11 73.6 3.5 37 30-66 38-74 (339)
117 3crm_A TRNA delta(2)-isopenten 98.2 4.9E-07 1.7E-11 73.4 3.3 35 32-66 5-39 (323)
118 1dek_A Deoxynucleoside monopho 98.2 1.7E-06 5.9E-11 67.5 4.8 40 33-72 2-41 (241)
119 3d3q_A TRNA delta(2)-isopenten 98.1 1.2E-06 4.1E-11 71.6 3.8 34 33-66 8-41 (340)
120 3foz_A TRNA delta(2)-isopenten 98.1 1.6E-06 5.5E-11 69.9 4.1 36 30-65 8-43 (316)
121 3t15_A Ribulose bisphosphate c 98.1 3.6E-06 1.2E-10 67.4 6.2 51 16-66 18-72 (293)
122 3exa_A TRNA delta(2)-isopenten 98.1 1.5E-06 5.2E-11 70.2 3.6 35 32-66 3-37 (322)
123 2j41_A Guanylate kinase; GMP, 98.0 2.6E-06 9E-11 63.9 3.6 26 31-56 5-30 (207)
124 1odf_A YGR205W, hypothetical 3 98.0 6.1E-06 2.1E-10 66.1 5.9 54 13-66 8-73 (290)
125 2jeo_A Uridine-cytidine kinase 98.0 4.2E-06 1.4E-10 65.1 4.1 31 29-59 22-52 (245)
126 1g8f_A Sulfate adenylyltransfe 98.0 4.7E-06 1.6E-10 71.6 4.6 51 15-65 378-435 (511)
127 3u61_B DNA polymerase accessor 98.0 2.7E-05 9.2E-10 62.7 8.5 55 8-63 24-79 (324)
128 3eph_A TRNA isopentenyltransfe 98.0 4.1E-06 1.4E-10 69.9 3.6 34 32-65 2-35 (409)
129 1kgd_A CASK, peripheral plasma 97.9 6.5E-06 2.2E-10 61.0 4.0 26 31-56 4-29 (180)
130 3ec2_A DNA replication protein 97.9 2.4E-05 8.2E-10 57.6 6.5 39 31-69 37-81 (180)
131 2chg_A Replication factor C sm 97.9 0.00023 8E-09 53.0 12.1 40 15-56 23-62 (226)
132 4b4t_M 26S protease regulatory 97.9 1.2E-05 3.9E-10 67.9 4.5 34 30-63 213-246 (434)
133 4b4t_L 26S protease subunit RP 97.8 1.2E-05 4.2E-10 67.8 4.5 34 30-63 213-246 (437)
134 4b4t_K 26S protease regulatory 97.8 1.4E-05 4.6E-10 67.4 4.6 34 30-63 204-237 (428)
135 3czp_A Putative polyphosphate 97.8 4.3E-05 1.5E-09 65.5 7.5 110 29-163 297-429 (500)
136 4b4t_J 26S protease regulatory 97.8 1.3E-05 4.5E-10 66.8 4.1 34 30-63 180-213 (405)
137 1jbk_A CLPB protein; beta barr 97.8 3.5E-05 1.2E-09 56.3 6.1 41 14-56 27-67 (195)
138 2ga8_A Hypothetical 39.9 kDa p 97.8 7.6E-06 2.6E-10 67.2 2.5 47 14-60 4-52 (359)
139 3a00_A Guanylate kinase, GMP k 97.8 1.2E-05 4.1E-10 59.8 3.3 24 33-56 2-25 (186)
140 2qz4_A Paraplegin; AAA+, SPG7, 97.8 1.9E-05 6.5E-10 61.3 4.5 34 30-63 37-70 (262)
141 2p65_A Hypothetical protein PF 97.8 3.5E-05 1.2E-09 56.2 5.6 40 15-56 28-67 (187)
142 3cf0_A Transitional endoplasmi 97.8 2.2E-05 7.4E-10 62.9 4.5 41 30-70 47-89 (301)
143 1lv7_A FTSH; alpha/beta domain 97.7 2.4E-05 8.3E-10 60.9 4.6 32 32-63 45-76 (257)
144 3h4m_A Proteasome-activating n 97.7 2.3E-05 7.9E-10 61.8 4.5 34 30-63 49-82 (285)
145 3b9p_A CG5977-PA, isoform A; A 97.7 2.4E-05 8.2E-10 62.1 4.5 32 31-62 53-84 (297)
146 1svm_A Large T antigen; AAA+ f 97.7 4.2E-05 1.5E-09 63.4 6.1 41 22-62 159-199 (377)
147 3czp_A Putative polyphosphate 97.7 5E-05 1.7E-09 65.1 6.6 110 29-163 40-172 (500)
148 2x8a_A Nuclear valosin-contain 97.7 3.2E-05 1.1E-09 61.2 4.9 29 34-62 46-74 (274)
149 3ney_A 55 kDa erythrocyte memb 97.7 2.2E-05 7.7E-10 59.3 3.8 27 31-57 18-44 (197)
150 4b4t_H 26S protease regulatory 97.7 2.2E-05 7.5E-10 66.5 4.1 34 30-63 241-274 (467)
151 1lvg_A Guanylate kinase, GMP k 97.7 1.8E-05 6.3E-10 59.5 3.3 26 31-56 3-28 (198)
152 3hws_A ATP-dependent CLP prote 97.7 4.8E-05 1.6E-09 62.4 6.0 33 31-63 50-82 (363)
153 1d2n_A N-ethylmaleimide-sensit 97.7 3.8E-05 1.3E-09 60.3 5.1 35 29-63 61-95 (272)
154 4b4t_I 26S protease regulatory 97.7 3E-05 1E-09 65.2 4.6 34 30-63 214-247 (437)
155 2qmh_A HPR kinase/phosphorylas 97.7 2.2E-05 7.7E-10 59.3 3.5 34 30-64 32-65 (205)
156 3d8b_A Fidgetin-like protein 1 97.7 4.8E-05 1.7E-09 62.4 5.8 33 30-62 115-147 (357)
157 1ye8_A Protein THEP1, hypothet 97.7 2.5E-05 8.4E-10 58.0 3.6 27 33-59 1-27 (178)
158 3eie_A Vacuolar protein sortin 97.7 3.3E-05 1.1E-09 62.4 4.5 34 30-63 49-82 (322)
159 3rhf_A Putative polyphosphate 97.7 7.2E-05 2.4E-09 59.4 6.3 109 31-164 74-205 (289)
160 3n70_A Transport activator; si 97.6 4.3E-05 1.5E-09 54.5 4.2 25 32-56 24-48 (145)
161 3lnc_A Guanylate kinase, GMP k 97.6 2.3E-05 7.9E-10 60.2 2.8 27 30-56 25-52 (231)
162 1xwi_A SKD1 protein; VPS4B, AA 97.6 4.8E-05 1.7E-09 61.6 4.5 31 31-61 44-75 (322)
163 1g41_A Heat shock protein HSLU 97.6 3.7E-05 1.3E-09 65.0 3.7 33 31-63 49-81 (444)
164 3pfi_A Holliday junction ATP-d 97.6 7E-05 2.4E-09 60.5 5.3 34 30-63 53-86 (338)
165 1s96_A Guanylate kinase, GMP k 97.6 4.5E-05 1.5E-09 58.5 3.9 28 30-57 14-41 (219)
166 2c9o_A RUVB-like 1; hexameric 97.6 9.3E-05 3.2E-09 62.7 6.0 33 30-62 61-95 (456)
167 1z6g_A Guanylate kinase; struc 97.6 4.3E-05 1.5E-09 58.4 3.5 27 30-56 21-47 (218)
168 1in4_A RUVB, holliday junction 97.6 5.7E-05 2E-09 61.3 4.5 29 31-59 50-78 (334)
169 2qp9_X Vacuolar protein sortin 97.6 5.4E-05 1.8E-09 62.1 4.2 33 31-63 83-115 (355)
170 1ofh_A ATP-dependent HSL prote 97.6 5.5E-05 1.9E-09 60.0 4.2 31 31-61 49-79 (310)
171 3aez_A Pantothenate kinase; tr 97.6 5.4E-05 1.8E-09 61.2 4.1 28 29-56 87-114 (312)
172 2w58_A DNAI, primosome compone 97.6 0.00013 4.3E-09 54.6 5.9 37 33-69 55-96 (202)
173 3syl_A Protein CBBX; photosynt 97.5 7.3E-05 2.5E-09 59.5 4.8 27 30-56 65-91 (309)
174 1tue_A Replication protein E1; 97.5 5.6E-05 1.9E-09 57.4 3.6 31 32-62 58-88 (212)
175 3bos_A Putative DNA replicatio 97.5 0.00012 4.2E-09 55.6 5.5 35 31-65 51-90 (242)
176 1l8q_A Chromosomal replication 97.5 0.00018 6.2E-09 57.9 6.7 37 31-67 36-77 (324)
177 1um8_A ATP-dependent CLP prote 97.5 7.3E-05 2.5E-09 61.5 4.4 33 31-63 71-103 (376)
178 1znw_A Guanylate kinase, GMP k 97.5 6.9E-05 2.3E-09 56.6 3.9 27 30-56 18-44 (207)
179 3pvs_A Replication-associated 97.5 0.00011 3.8E-09 62.2 5.5 31 33-63 51-81 (447)
180 2r62_A Cell division protease 97.5 2.9E-05 1E-09 60.7 1.7 32 32-63 44-75 (268)
181 1ixz_A ATP-dependent metallopr 97.5 7.7E-05 2.6E-09 57.9 3.9 29 34-62 51-79 (254)
182 1njg_A DNA polymerase III subu 97.5 0.00014 4.8E-09 54.9 5.3 42 15-57 29-70 (250)
183 2kjq_A DNAA-related protein; s 97.5 9.5E-05 3.3E-09 53.1 3.9 26 31-56 35-60 (149)
184 3cf2_A TER ATPase, transitiona 97.4 0.00011 3.9E-09 66.3 5.2 122 30-160 509-660 (806)
185 3te6_A Regulatory protein SIR3 97.4 0.00011 3.7E-09 59.6 4.5 28 29-56 42-69 (318)
186 1sxj_A Activator 1 95 kDa subu 97.4 9.9E-05 3.4E-09 63.5 4.5 32 32-63 77-108 (516)
187 3vfd_A Spastin; ATPase, microt 97.4 0.00012 4.1E-09 60.6 4.6 33 31-63 147-179 (389)
188 1xjc_A MOBB protein homolog; s 97.4 0.00011 3.8E-09 54.1 3.8 25 32-56 4-28 (169)
189 3cf2_A TER ATPase, transitiona 97.4 0.0001 3.4E-09 66.6 4.0 34 30-63 236-269 (806)
190 2v1u_A Cell division control p 97.4 0.0002 6.7E-09 58.4 5.3 43 14-56 24-68 (387)
191 1sxj_C Activator 1 40 kDa subu 97.4 0.0002 6.8E-09 58.1 5.3 40 15-56 31-70 (340)
192 3pxg_A Negative regulator of g 97.4 0.00028 9.6E-09 60.0 6.4 41 14-56 185-225 (468)
193 3uk6_A RUVB-like 2; hexameric 97.4 0.00021 7.1E-09 58.3 5.5 27 32-58 70-96 (368)
194 3co5_A Putative two-component 97.4 3.3E-05 1.1E-09 55.0 0.4 25 33-57 28-52 (143)
195 2ce7_A Cell division protein F 97.3 0.00016 5.3E-09 61.8 4.5 33 31-63 48-80 (476)
196 2zan_A Vacuolar protein sortin 97.3 0.00015 5.2E-09 61.2 4.4 39 31-69 166-207 (444)
197 1iy2_A ATP-dependent metallopr 97.3 0.00014 4.6E-09 57.4 3.9 29 34-62 75-103 (278)
198 2qby_A CDC6 homolog 1, cell di 97.3 0.00028 9.6E-09 57.4 5.8 42 15-56 26-69 (386)
199 3hu3_A Transitional endoplasmi 97.3 0.00024 8.4E-09 60.8 5.6 34 30-63 236-269 (489)
200 1c9k_A COBU, adenosylcobinamid 97.3 9.9E-05 3.4E-09 54.9 2.8 29 34-63 1-31 (180)
201 1htw_A HI0065; nucleotide-bind 97.3 0.00018 6.1E-09 52.3 4.0 27 30-56 31-57 (158)
202 2ehv_A Hypothetical protein PH 97.3 0.00012 4.1E-09 56.2 3.2 24 30-53 28-51 (251)
203 4gzl_A RAS-related C3 botulinu 97.3 0.00013 4.6E-09 54.6 3.3 51 2-54 2-52 (204)
204 2gno_A DNA polymerase III, gam 97.3 0.0016 5.6E-08 52.2 9.8 24 32-55 18-41 (305)
205 1hqc_A RUVB; extended AAA-ATPa 97.3 0.0002 6.9E-09 57.3 4.3 31 31-61 37-67 (324)
206 1sxj_D Activator 1 41 kDa subu 97.3 0.00025 8.5E-09 57.3 4.8 24 34-57 60-83 (353)
207 1sxj_E Activator 1 40 kDa subu 97.3 0.00025 8.5E-09 57.5 4.8 41 15-56 20-60 (354)
208 1np6_A Molybdopterin-guanine d 97.3 0.00021 7.3E-09 52.8 4.0 25 32-56 6-30 (174)
209 2v9p_A Replication protein E1; 97.3 0.0002 6.9E-09 57.6 4.0 29 28-56 122-150 (305)
210 4a74_A DNA repair and recombin 97.2 0.00014 4.8E-09 55.1 2.9 26 30-55 23-48 (231)
211 2qby_B CDC6 homolog 3, cell di 97.2 0.00045 1.5E-08 56.4 6.0 28 29-56 42-69 (384)
212 2eyu_A Twitching motility prot 97.2 0.00023 7.8E-09 56.0 4.0 27 30-56 23-49 (261)
213 1jr3_A DNA polymerase III subu 97.2 0.00048 1.6E-08 56.0 6.1 44 14-58 21-64 (373)
214 1rj9_A FTSY, signal recognitio 97.2 0.00024 8.1E-09 57.2 4.1 26 31-56 101-126 (304)
215 4fcw_A Chaperone protein CLPB; 97.2 0.00048 1.6E-08 54.7 5.9 24 33-56 48-71 (311)
216 2z4s_A Chromosomal replication 97.2 0.00052 1.8E-08 57.9 6.3 36 32-67 130-172 (440)
217 1iqp_A RFCS; clamp loader, ext 97.2 0.00045 1.5E-08 55.0 5.7 41 14-56 30-70 (327)
218 3e70_C DPA, signal recognition 97.2 0.00024 8.2E-09 57.7 4.1 27 30-56 127-153 (328)
219 2qgz_A Helicase loader, putati 97.2 0.00065 2.2E-08 54.6 6.6 38 32-69 152-195 (308)
220 3tif_A Uncharacterized ABC tra 97.2 0.00019 6.4E-09 55.5 3.2 27 30-56 29-55 (235)
221 3pxi_A Negative regulator of g 97.2 0.00051 1.7E-08 61.7 6.4 53 9-63 179-242 (758)
222 2cvh_A DNA repair and recombin 97.2 0.00024 8.4E-09 53.4 3.7 34 30-63 18-53 (220)
223 1vma_A Cell division protein F 97.2 0.00026 8.9E-09 57.0 3.9 27 30-56 102-128 (306)
224 3m6a_A ATP-dependent protease 97.2 0.00027 9.2E-09 61.2 4.3 31 31-61 107-137 (543)
225 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.00028 9.4E-09 53.4 3.9 26 31-56 22-47 (235)
226 2bjv_A PSP operon transcriptio 97.2 0.00028 9.7E-09 55.0 3.9 26 32-57 29-54 (265)
227 3b9q_A Chloroplast SRP recepto 97.2 0.00029 9.9E-09 56.6 4.0 27 30-56 98-124 (302)
228 2i3b_A HCR-ntpase, human cance 97.2 0.00026 8.8E-09 53.0 3.5 24 33-56 2-25 (189)
229 2cbz_A Multidrug resistance-as 97.1 0.00024 8.2E-09 55.0 3.2 27 30-56 29-55 (237)
230 2r2a_A Uncharacterized protein 97.1 0.00031 1.1E-08 53.0 3.7 23 32-54 5-27 (199)
231 2chq_A Replication factor C sm 97.1 0.00052 1.8E-08 54.4 5.2 41 14-56 22-62 (319)
232 1fnn_A CDC6P, cell division co 97.1 0.00077 2.6E-08 55.0 6.2 23 34-56 46-68 (389)
233 2pcj_A ABC transporter, lipopr 97.1 0.00023 7.9E-09 54.6 2.8 27 30-56 28-54 (224)
234 2orw_A Thymidine kinase; TMTK, 97.1 0.00035 1.2E-08 51.9 3.7 25 32-56 3-27 (184)
235 1b0u_A Histidine permease; ABC 97.1 0.00029 9.9E-09 55.4 3.2 27 30-56 30-56 (262)
236 2wsm_A Hydrogenase expression/ 97.1 0.00043 1.5E-08 52.2 4.0 27 30-56 28-54 (221)
237 2r44_A Uncharacterized protein 97.1 0.00023 7.8E-09 57.4 2.6 28 34-61 48-75 (331)
238 3p32_A Probable GTPase RV1496/ 97.1 0.00081 2.8E-08 55.0 5.9 27 30-56 77-103 (355)
239 1mv5_A LMRA, multidrug resista 97.1 0.00031 1E-08 54.6 3.1 27 30-56 26-52 (243)
240 1sxj_B Activator 1 37 kDa subu 97.1 0.00064 2.2E-08 54.0 5.1 40 15-56 27-66 (323)
241 1n0w_A DNA repair protein RAD5 97.1 0.00032 1.1E-08 53.6 3.2 26 30-55 22-47 (243)
242 1ypw_A Transitional endoplasmi 97.0 0.00035 1.2E-08 63.3 3.8 34 30-63 236-269 (806)
243 2olj_A Amino acid ABC transpor 97.0 0.00033 1.1E-08 55.2 3.2 27 30-56 48-74 (263)
244 2ixe_A Antigen peptide transpo 97.0 0.00033 1.1E-08 55.3 3.2 27 30-56 43-69 (271)
245 1a5t_A Delta prime, HOLB; zinc 97.0 0.00097 3.3E-08 54.0 6.1 45 14-59 7-51 (334)
246 2f1r_A Molybdopterin-guanine d 97.0 0.00017 5.8E-09 53.1 1.4 24 33-56 3-26 (171)
247 3gfo_A Cobalt import ATP-bindi 97.0 0.00031 1.1E-08 55.7 3.0 27 30-56 32-58 (275)
248 2ghi_A Transport protein; mult 97.0 0.00034 1.2E-08 54.9 3.2 27 30-56 44-70 (260)
249 2yhs_A FTSY, cell division pro 97.0 0.00037 1.3E-08 59.6 3.6 27 30-56 291-317 (503)
250 2px0_A Flagellar biosynthesis 97.0 0.00043 1.5E-08 55.4 3.8 27 30-56 103-129 (296)
251 2og2_A Putative signal recogni 97.0 0.00044 1.5E-08 56.9 3.9 27 30-56 155-181 (359)
252 2onk_A Molybdate/tungstate ABC 97.0 0.0004 1.4E-08 53.9 3.5 24 33-56 25-48 (240)
253 2ff7_A Alpha-hemolysin translo 97.0 0.00033 1.1E-08 54.6 3.0 27 30-56 33-59 (247)
254 4g1u_C Hemin import ATP-bindin 97.0 0.00034 1.1E-08 55.2 3.1 27 30-56 35-61 (266)
255 2zu0_C Probable ATP-dependent 97.0 0.00043 1.5E-08 54.5 3.7 26 30-55 44-69 (267)
256 2dhr_A FTSH; AAA+ protein, hex 97.0 0.00053 1.8E-08 58.8 4.5 31 32-62 64-94 (499)
257 2d2e_A SUFC protein; ABC-ATPas 97.0 0.00042 1.4E-08 54.1 3.6 26 30-55 27-52 (250)
258 1vpl_A ABC transporter, ATP-bi 97.0 0.00037 1.3E-08 54.6 3.2 27 30-56 39-65 (256)
259 3b85_A Phosphate starvation-in 97.0 0.00037 1.3E-08 52.9 3.1 23 32-54 22-44 (208)
260 1sgw_A Putative ABC transporte 97.0 0.00032 1.1E-08 53.5 2.7 27 30-56 33-59 (214)
261 1u0j_A DNA replication protein 97.0 0.00061 2.1E-08 53.7 4.3 25 32-56 104-128 (267)
262 2pze_A Cystic fibrosis transme 97.0 0.00037 1.3E-08 53.6 3.0 27 30-56 32-58 (229)
263 1g6h_A High-affinity branched- 97.0 0.00037 1.2E-08 54.6 3.0 27 30-56 31-57 (257)
264 2hf9_A Probable hydrogenase ni 97.0 0.00074 2.5E-08 51.0 4.7 27 30-56 36-62 (226)
265 1ji0_A ABC transporter; ATP bi 97.0 0.00037 1.3E-08 54.0 3.0 27 30-56 30-56 (240)
266 1cr0_A DNA primase/helicase; R 97.0 0.00049 1.7E-08 54.6 3.8 27 30-56 33-59 (296)
267 2qm8_A GTPase/ATPase; G protei 97.0 0.00086 2.9E-08 54.6 5.2 28 29-56 52-79 (337)
268 1zcb_A G alpha I/13; GTP-bindi 97.0 0.00048 1.7E-08 56.7 3.6 44 13-56 14-57 (362)
269 2yz2_A Putative ABC transporte 97.0 0.00044 1.5E-08 54.4 3.2 27 30-56 31-57 (266)
270 3kl4_A SRP54, signal recogniti 96.9 0.00051 1.8E-08 57.8 3.6 26 31-56 96-121 (433)
271 2www_A Methylmalonic aciduria 96.9 0.0013 4.3E-08 53.9 5.8 26 31-56 73-98 (349)
272 2qi9_C Vitamin B12 import ATP- 96.9 0.00045 1.6E-08 53.9 3.0 27 30-56 24-50 (249)
273 2ewv_A Twitching motility prot 96.9 0.00061 2.1E-08 56.3 3.9 27 30-56 134-160 (372)
274 2dr3_A UPF0273 protein PH0284; 96.9 0.00053 1.8E-08 52.4 3.3 34 30-63 21-59 (247)
275 1qvr_A CLPB protein; coiled co 96.9 0.00082 2.8E-08 61.2 5.0 26 31-56 190-215 (854)
276 2ihy_A ABC transporter, ATP-bi 96.9 0.00047 1.6E-08 54.7 3.0 27 30-56 45-71 (279)
277 3fvq_A Fe(3+) IONS import ATP- 96.9 0.00057 2E-08 56.2 3.5 27 30-56 28-54 (359)
278 3tqf_A HPR(Ser) kinase; transf 96.9 0.00068 2.3E-08 50.0 3.5 31 32-63 16-46 (181)
279 2nq2_C Hypothetical ABC transp 96.9 0.00051 1.7E-08 53.7 3.0 27 30-56 29-55 (253)
280 3dm5_A SRP54, signal recogniti 96.9 0.00065 2.2E-08 57.3 3.8 26 31-56 99-124 (443)
281 2yyz_A Sugar ABC transporter, 96.9 0.00069 2.3E-08 55.7 3.7 27 30-56 27-53 (359)
282 1lw7_A Transcriptional regulat 96.9 0.00057 2E-08 56.1 3.2 27 32-58 170-196 (365)
283 3rlf_A Maltose/maltodextrin im 96.8 0.0007 2.4E-08 56.1 3.7 27 30-56 27-53 (381)
284 1g8p_A Magnesium-chelatase 38 96.8 0.00042 1.4E-08 55.9 2.3 24 34-57 47-70 (350)
285 2it1_A 362AA long hypothetical 96.8 0.00075 2.6E-08 55.5 3.7 27 30-56 27-53 (362)
286 2qen_A Walker-type ATPase; unk 96.8 0.001 3.4E-08 53.4 4.4 33 33-65 32-64 (350)
287 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0017 5.9E-08 58.2 6.3 26 31-56 206-231 (758)
288 3jvv_A Twitching mobility prot 96.8 0.00089 3.1E-08 55.0 4.0 24 33-56 124-147 (356)
289 1zu4_A FTSY; GTPase, signal re 96.8 0.00091 3.1E-08 54.1 4.0 27 30-56 103-129 (320)
290 1v43_A Sugar-binding transport 96.8 0.00079 2.7E-08 55.6 3.7 27 30-56 35-61 (372)
291 2b8t_A Thymidine kinase; deoxy 96.8 0.00099 3.4E-08 51.1 4.0 28 29-56 9-36 (223)
292 1z47_A CYSA, putative ABC-tran 96.8 0.00081 2.8E-08 55.2 3.6 26 30-55 39-64 (355)
293 1ojl_A Transcriptional regulat 96.8 0.0011 3.6E-08 53.2 4.2 25 32-56 25-49 (304)
294 1nlf_A Regulatory protein REPA 96.8 0.00076 2.6E-08 53.1 3.3 25 31-55 29-53 (279)
295 3tui_C Methionine import ATP-b 96.8 0.00085 2.9E-08 55.3 3.7 27 30-56 52-78 (366)
296 2gza_A Type IV secretion syste 96.8 0.00062 2.1E-08 55.9 2.9 27 31-57 174-200 (361)
297 2bbs_A Cystic fibrosis transme 96.8 0.00068 2.3E-08 54.1 3.0 27 30-56 62-88 (290)
298 1ypw_A Transitional endoplasmi 96.7 0.00042 1.4E-08 62.8 1.7 32 31-62 510-541 (806)
299 2p67_A LAO/AO transport system 96.7 0.0014 4.9E-08 53.3 4.7 28 29-56 53-80 (341)
300 3nh6_A ATP-binding cassette SU 96.7 0.00048 1.7E-08 55.4 1.8 27 30-56 78-104 (306)
301 1g29_1 MALK, maltose transport 96.7 0.00095 3.2E-08 55.1 3.6 26 30-55 27-52 (372)
302 1oix_A RAS-related protein RAB 96.7 0.00094 3.2E-08 49.4 3.2 23 33-55 30-52 (191)
303 2pjz_A Hypothetical protein ST 96.7 0.00084 2.9E-08 52.8 3.0 24 32-55 30-53 (263)
304 2gj8_A MNME, tRNA modification 96.7 0.00099 3.4E-08 48.4 3.2 25 31-55 3-27 (172)
305 3d31_A Sulfate/molybdate ABC t 96.7 0.00064 2.2E-08 55.7 2.4 27 30-56 24-50 (348)
306 1p9r_A General secretion pathw 96.7 0.0012 4.2E-08 55.3 4.1 28 30-57 165-192 (418)
307 2lkc_A Translation initiation 96.7 0.0013 4.3E-08 47.4 3.7 25 30-54 6-30 (178)
308 2wji_A Ferrous iron transport 96.7 0.00098 3.4E-08 47.9 3.1 22 33-54 4-25 (165)
309 2ged_A SR-beta, signal recogni 96.7 0.0013 4.6E-08 48.2 3.9 26 30-55 46-71 (193)
310 3gd7_A Fusion complex of cysti 96.7 0.001 3.5E-08 55.3 3.5 25 30-54 45-69 (390)
311 1pzn_A RAD51, DNA repair and r 96.7 0.00083 2.8E-08 55.0 2.9 27 30-56 129-155 (349)
312 2npi_A Protein CLP1; CLP1-PCF1 96.7 0.00089 3.1E-08 56.8 3.1 27 30-56 136-162 (460)
313 2dyk_A GTP-binding protein; GT 96.7 0.0012 4.2E-08 46.6 3.4 23 33-55 2-24 (161)
314 2f9l_A RAB11B, member RAS onco 96.7 0.0012 4.1E-08 49.0 3.4 23 33-55 6-28 (199)
315 1kao_A RAP2A; GTP-binding prot 96.6 0.0012 4E-08 46.8 3.2 23 33-55 4-26 (167)
316 1upt_A ARL1, ADP-ribosylation 96.6 0.0015 5.1E-08 46.7 3.8 25 30-54 5-29 (171)
317 2wjg_A FEOB, ferrous iron tran 96.6 0.0011 3.8E-08 48.4 3.1 24 32-55 7-30 (188)
318 1z2a_A RAS-related protein RAB 96.6 0.0012 4.1E-08 47.0 3.2 24 32-55 5-28 (168)
319 2v3c_C SRP54, signal recogniti 96.6 0.0011 3.7E-08 55.9 3.4 27 30-56 97-123 (432)
320 1j8m_F SRP54, signal recogniti 96.6 0.0026 8.9E-08 50.8 5.3 25 32-56 98-122 (297)
321 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0012 4.1E-08 53.5 3.3 32 32-63 123-156 (331)
322 1yrb_A ATP(GTP)binding protein 96.6 0.0017 5.9E-08 50.2 4.2 28 29-56 11-38 (262)
323 1nrj_B SR-beta, signal recogni 96.6 0.0017 5.6E-08 48.7 3.9 26 31-56 11-36 (218)
324 3sop_A Neuronal-specific septi 96.6 0.0011 3.8E-08 52.3 3.0 24 33-56 3-26 (270)
325 1oxx_K GLCV, glucose, ABC tran 96.6 0.00064 2.2E-08 55.8 1.7 26 30-55 29-54 (353)
326 1xx6_A Thymidine kinase; NESG, 96.6 0.0019 6.6E-08 48.3 4.2 27 30-56 6-32 (191)
327 2ce2_X GTPase HRAS; signaling 96.6 0.0012 4.2E-08 46.6 3.0 23 33-55 4-26 (166)
328 1moz_A ARL1, ADP-ribosylation 96.6 0.0018 6.2E-08 46.9 4.0 25 30-54 16-40 (183)
329 3hr8_A Protein RECA; alpha and 96.6 0.0013 4.3E-08 54.1 3.3 34 30-63 59-97 (356)
330 4a1f_A DNAB helicase, replicat 96.6 0.013 4.5E-07 47.7 9.3 34 30-63 44-82 (338)
331 4dsu_A GTPase KRAS, isoform 2B 96.6 0.0012 4.2E-08 47.9 2.8 25 31-55 3-27 (189)
332 1pui_A ENGB, probable GTP-bind 96.5 0.00075 2.6E-08 50.3 1.7 26 29-54 23-48 (210)
333 1u8z_A RAS-related protein RAL 96.5 0.0015 5.2E-08 46.3 3.2 24 32-55 4-27 (168)
334 3kta_A Chromosome segregation 96.5 0.0015 5.3E-08 47.7 3.3 24 34-57 28-51 (182)
335 1ky3_A GTP-binding protein YPT 96.5 0.0015 5.2E-08 47.0 3.2 24 32-55 8-31 (182)
336 1r6b_X CLPA protein; AAA+, N-t 96.5 0.0018 6E-08 58.1 4.2 28 34-61 490-517 (758)
337 2zts_A Putative uncharacterize 96.5 0.0016 5.6E-08 49.7 3.5 25 30-54 28-52 (251)
338 1c1y_A RAS-related protein RAP 96.5 0.0016 5.6E-08 46.2 3.2 22 33-54 4-25 (167)
339 3clv_A RAB5 protein, putative; 96.5 0.0021 7.1E-08 47.1 3.9 25 31-55 6-30 (208)
340 2hxs_A RAB-26, RAS-related pro 96.5 0.0018 6E-08 46.7 3.4 25 31-55 5-29 (178)
341 2erx_A GTP-binding protein DI- 96.5 0.0015 5.1E-08 46.6 3.0 23 32-54 3-25 (172)
342 2fn4_A P23, RAS-related protei 96.5 0.0016 5.6E-08 46.8 3.2 25 31-55 8-32 (181)
343 2nzj_A GTP-binding protein REM 96.5 0.0017 5.7E-08 46.6 3.2 24 32-55 4-27 (175)
344 2j37_W Signal recognition part 96.5 0.0018 6.2E-08 55.5 3.9 27 30-56 99-125 (504)
345 3nbx_X ATPase RAVA; AAA+ ATPas 96.5 0.0007 2.4E-08 58.1 1.3 25 33-57 42-66 (500)
346 1nij_A Hypothetical protein YJ 96.5 0.0013 4.4E-08 53.0 2.7 24 32-55 4-27 (318)
347 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.0011 3.8E-08 53.8 2.3 25 32-56 171-195 (330)
348 2zej_A Dardarin, leucine-rich 96.5 0.0015 5E-08 47.8 2.8 22 33-54 3-24 (184)
349 1fzq_A ADP-ribosylation factor 96.4 0.0027 9.2E-08 46.3 4.2 26 30-55 14-39 (181)
350 1ek0_A Protein (GTP-binding pr 96.4 0.0015 5.2E-08 46.4 2.7 23 33-55 4-26 (170)
351 1ls1_A Signal recognition part 96.4 0.0022 7.4E-08 51.2 3.8 26 31-56 97-122 (295)
352 2zr9_A Protein RECA, recombina 96.4 0.0017 5.9E-08 53.1 3.3 33 31-63 60-97 (349)
353 2fna_A Conserved hypothetical 96.4 0.0044 1.5E-07 49.6 5.6 43 15-63 19-63 (357)
354 2oil_A CATX-8, RAS-related pro 96.4 0.0018 6.3E-08 47.5 3.1 24 32-55 25-48 (193)
355 1svi_A GTP-binding protein YSX 96.4 0.0023 7.9E-08 46.9 3.6 25 31-55 22-46 (195)
356 3lda_A DNA repair protein RAD5 96.4 0.0019 6.4E-08 53.9 3.3 25 30-54 176-200 (400)
357 3th5_A RAS-related C3 botulinu 95.4 0.00055 1.9E-08 50.9 0.0 26 29-54 27-52 (204)
358 3q72_A GTP-binding protein RAD 96.4 0.0022 7.6E-08 45.5 3.2 22 33-54 3-24 (166)
359 1tq4_A IIGP1, interferon-induc 96.4 0.002 6.8E-08 54.0 3.3 23 32-54 69-91 (413)
360 3pqc_A Probable GTP-binding pr 96.4 0.0024 8.1E-08 46.6 3.4 24 32-55 23-46 (195)
361 1z08_A RAS-related protein RAB 96.4 0.002 6.7E-08 46.0 2.9 24 32-55 6-29 (170)
362 1v5w_A DMC1, meiotic recombina 96.4 0.0027 9.1E-08 51.7 4.0 26 30-55 120-145 (343)
363 1m2o_B GTP-binding protein SAR 96.4 0.0022 7.5E-08 47.2 3.2 24 31-54 22-45 (190)
364 2rcn_A Probable GTPase ENGC; Y 96.4 0.0023 7.7E-08 52.6 3.5 25 32-56 215-239 (358)
365 2atv_A RERG, RAS-like estrogen 96.3 0.0027 9.4E-08 46.7 3.7 26 30-55 26-51 (196)
366 2xxa_A Signal recognition part 96.3 0.0027 9.3E-08 53.5 4.1 27 30-56 98-124 (433)
367 1g16_A RAS-related protein SEC 96.3 0.0021 7.2E-08 45.7 3.0 22 33-54 4-25 (170)
368 2oap_1 GSPE-2, type II secreti 96.3 0.0016 5.3E-08 56.1 2.6 26 31-56 259-284 (511)
369 2qu8_A Putative nucleolar GTP- 96.3 0.0024 8E-08 48.5 3.4 33 23-55 20-52 (228)
370 3con_A GTPase NRAS; structural 96.3 0.0018 6.3E-08 47.3 2.7 24 32-55 21-44 (190)
371 1zd9_A ADP-ribosylation factor 96.3 0.0021 7.1E-08 47.1 3.0 25 30-54 20-44 (188)
372 1m7b_A RND3/RHOE small GTP-bin 96.3 0.0021 7.2E-08 46.9 3.0 24 32-55 7-30 (184)
373 3ihw_A Centg3; RAS, centaurin, 96.3 0.0026 9E-08 46.6 3.5 26 30-55 18-43 (184)
374 3q85_A GTP-binding protein REM 96.3 0.0025 8.5E-08 45.4 3.3 22 33-54 3-24 (169)
375 3bwd_D RAC-like GTP-binding pr 96.3 0.003 1E-07 45.6 3.7 26 30-55 6-31 (182)
376 1zj6_A ADP-ribosylation factor 96.3 0.0027 9.4E-08 46.3 3.6 26 29-54 13-38 (187)
377 3kkq_A RAS-related protein M-R 96.3 0.0027 9.3E-08 46.0 3.5 25 31-55 17-41 (183)
378 1wms_A RAB-9, RAB9, RAS-relate 96.3 0.0027 9.1E-08 45.6 3.4 23 33-55 8-30 (177)
379 2yv5_A YJEQ protein; hydrolase 96.3 0.0025 8.6E-08 51.0 3.6 24 32-56 165-188 (302)
380 1z0j_A RAB-22, RAS-related pro 96.3 0.002 6.7E-08 45.9 2.7 23 33-55 7-29 (170)
381 3k1j_A LON protease, ATP-depen 96.3 0.0015 5.3E-08 57.2 2.4 25 33-57 61-85 (604)
382 1z6t_A APAF-1, apoptotic prote 96.3 0.0042 1.4E-07 53.8 5.2 41 14-54 129-169 (591)
383 3upu_A ATP-dependent DNA helic 96.3 0.0053 1.8E-07 51.8 5.7 23 34-56 47-69 (459)
384 1u94_A RECA protein, recombina 96.3 0.0025 8.6E-08 52.3 3.5 33 31-63 62-99 (356)
385 1r2q_A RAS-related protein RAB 96.3 0.0016 5.5E-08 46.3 2.1 23 32-54 6-28 (170)
386 3bc1_A RAS-related protein RAB 96.3 0.0022 7.7E-08 46.6 2.9 23 32-54 11-33 (195)
387 2qag_B Septin-6, protein NEDD5 96.3 0.0023 7.9E-08 53.7 3.3 26 30-55 38-65 (427)
388 1ksh_A ARF-like protein 2; sma 96.3 0.0028 9.6E-08 46.1 3.4 26 30-55 16-41 (186)
389 3k53_A Ferrous iron transport 96.3 0.0025 8.5E-08 49.9 3.3 23 33-55 4-26 (271)
390 2efe_B Small GTP-binding prote 96.3 0.0023 7.9E-08 46.2 2.9 24 32-55 12-35 (181)
391 2a9k_A RAS-related protein RAL 96.3 0.0027 9.1E-08 45.9 3.2 24 32-55 18-41 (187)
392 2z43_A DNA repair and recombin 96.3 0.0025 8.4E-08 51.4 3.2 27 30-56 105-131 (324)
393 3oes_A GTPase rhebl1; small GT 96.3 0.0024 8.4E-08 47.3 3.0 26 30-55 22-47 (201)
394 2p5s_A RAS and EF-hand domain 96.2 0.0031 1.1E-07 46.6 3.6 26 30-55 26-51 (199)
395 2bov_A RAla, RAS-related prote 96.2 0.003 1E-07 46.6 3.5 24 32-55 14-37 (206)
396 2fh5_B SR-beta, signal recogni 96.2 0.003 1E-07 47.2 3.4 25 31-55 6-30 (214)
397 2y8e_A RAB-protein 6, GH09086P 96.2 0.0022 7.6E-08 46.0 2.6 22 33-54 15-36 (179)
398 1z06_A RAS-related protein RAB 96.2 0.0028 9.5E-08 46.4 3.2 24 31-54 19-42 (189)
399 2g6b_A RAS-related protein RAB 96.2 0.0025 8.7E-08 45.9 2.9 24 32-55 10-33 (180)
400 3t1o_A Gliding protein MGLA; G 96.2 0.0029 9.8E-08 46.2 3.2 25 33-57 15-39 (198)
401 3ozx_A RNAse L inhibitor; ATP 96.2 0.0025 8.5E-08 55.2 3.3 28 29-56 22-49 (538)
402 3pxi_A Negative regulator of g 96.2 0.0034 1.2E-07 56.4 4.3 32 34-65 523-559 (758)
403 3bh0_A DNAB-like replicative h 96.2 0.0036 1.2E-07 50.3 4.0 34 30-63 66-104 (315)
404 3b5x_A Lipid A export ATP-bind 96.2 0.0028 9.5E-08 55.3 3.6 27 30-56 367-393 (582)
405 1vg8_A RAS-related protein RAB 96.2 0.0029 1E-07 46.8 3.2 24 32-55 8-31 (207)
406 2b6h_A ADP-ribosylation factor 96.2 0.0032 1.1E-07 46.4 3.4 26 29-54 26-51 (192)
407 2j1l_A RHO-related GTP-binding 96.2 0.0026 9E-08 47.7 3.0 24 31-54 33-56 (214)
408 3t5g_A GTP-binding protein RHE 96.2 0.002 6.8E-08 46.6 2.2 23 32-54 6-28 (181)
409 3tw8_B RAS-related protein RAB 96.2 0.003 1E-07 45.4 3.1 23 32-54 9-31 (181)
410 1r8s_A ADP-ribosylation factor 96.2 0.0038 1.3E-07 44.2 3.6 22 34-55 2-23 (164)
411 2gf0_A GTP-binding protein DI- 96.2 0.0038 1.3E-07 45.7 3.7 24 31-54 7-30 (199)
412 2h57_A ADP-ribosylation factor 96.2 0.0023 7.9E-08 46.8 2.5 27 30-56 19-45 (190)
413 1yqt_A RNAse L inhibitor; ATP- 96.2 0.0032 1.1E-07 54.5 3.7 27 30-56 45-71 (538)
414 3c5c_A RAS-like protein 12; GD 96.2 0.0031 1.1E-07 46.2 3.2 24 32-55 21-44 (187)
415 2ffh_A Protein (FFH); SRP54, s 96.2 0.0035 1.2E-07 52.7 3.8 26 31-56 97-122 (425)
416 3lxx_A GTPase IMAP family memb 96.2 0.0028 9.7E-08 48.5 3.1 26 30-55 27-52 (239)
417 1w5s_A Origin recognition comp 96.2 0.0028 9.4E-08 52.1 3.2 26 31-56 49-76 (412)
418 2h17_A ADP-ribosylation factor 96.2 0.0026 9E-08 46.2 2.7 26 30-55 19-44 (181)
419 1z0f_A RAB14, member RAS oncog 96.2 0.0036 1.2E-07 44.9 3.4 24 32-55 15-38 (179)
420 3llu_A RAS-related GTP-binding 96.2 0.0025 8.5E-08 47.1 2.6 28 29-56 17-44 (196)
421 3b60_A Lipid A export ATP-bind 96.2 0.0025 8.5E-08 55.6 2.9 27 30-56 367-393 (582)
422 1mh1_A RAC1; GTP-binding, GTPa 96.1 0.003 1E-07 45.6 3.0 23 32-54 5-27 (186)
423 2i1q_A DNA repair and recombin 96.1 0.0031 1.1E-07 50.7 3.2 26 30-55 96-121 (322)
424 2bme_A RAB4A, RAS-related prot 96.1 0.003 1E-07 45.8 2.9 24 32-55 10-33 (186)
425 2cxx_A Probable GTP-binding pr 96.1 0.0033 1.1E-07 45.7 3.0 22 34-55 3-24 (190)
426 1f6b_A SAR1; gtpases, N-termin 96.1 0.0033 1.1E-07 46.6 3.0 24 31-54 24-47 (198)
427 3def_A T7I23.11 protein; chlor 96.1 0.0058 2E-07 47.6 4.6 36 20-55 24-59 (262)
428 1u0l_A Probable GTPase ENGC; p 96.1 0.0035 1.2E-07 50.1 3.3 24 32-55 169-192 (301)
429 1tf7_A KAIC; homohexamer, hexa 96.1 0.0028 9.7E-08 54.5 3.0 23 30-52 37-59 (525)
430 2xtp_A GTPase IMAP family memb 96.1 0.0037 1.3E-07 48.4 3.4 26 30-55 20-45 (260)
431 3reg_A RHO-like small GTPase; 96.1 0.0032 1.1E-07 46.2 2.8 25 31-55 22-46 (194)
432 1f2t_A RAD50 ABC-ATPase; DNA d 96.1 0.0045 1.5E-07 44.2 3.5 25 32-56 23-47 (149)
433 2iwr_A Centaurin gamma 1; ANK 96.1 0.003 1E-07 45.6 2.6 25 31-55 6-30 (178)
434 2yl4_A ATP-binding cassette SU 96.1 0.0027 9.1E-08 55.5 2.7 27 30-56 368-394 (595)
435 4bas_A ADP-ribosylation factor 96.0 0.0035 1.2E-07 46.0 2.9 25 30-54 15-39 (199)
436 2obl_A ESCN; ATPase, hydrolase 96.0 0.0039 1.3E-07 50.9 3.4 28 30-57 69-96 (347)
437 3tkl_A RAS-related protein RAB 96.0 0.0044 1.5E-07 45.3 3.4 24 32-55 16-39 (196)
438 2q3h_A RAS homolog gene family 96.0 0.0045 1.6E-07 45.6 3.4 25 30-54 18-42 (201)
439 2r6a_A DNAB helicase, replicat 96.0 0.005 1.7E-07 52.0 4.1 27 30-56 201-227 (454)
440 3dz8_A RAS-related protein RAB 96.0 0.0045 1.5E-07 45.4 3.4 24 33-56 24-47 (191)
441 3qf4_B Uncharacterized ABC tra 96.0 0.0031 1.1E-07 55.2 2.8 27 30-56 379-405 (598)
442 3j16_B RLI1P; ribosome recycli 96.0 0.0042 1.4E-07 54.5 3.7 27 30-56 101-127 (608)
443 3cph_A RAS-related protein SEC 96.0 0.0049 1.7E-07 45.7 3.6 24 31-54 19-42 (213)
444 1x3s_A RAS-related protein RAB 96.0 0.0035 1.2E-07 45.8 2.7 24 32-55 15-38 (195)
445 2fg5_A RAB-22B, RAS-related pr 96.0 0.0033 1.1E-07 46.2 2.6 24 32-55 23-46 (192)
446 2a5j_A RAS-related protein RAB 96.0 0.0039 1.3E-07 45.7 3.0 23 33-55 22-44 (191)
447 3e1s_A Exodeoxyribonuclease V, 96.0 0.0048 1.6E-07 53.8 3.9 25 32-56 204-228 (574)
448 2gf9_A RAS-related protein RAB 96.0 0.0049 1.7E-07 45.0 3.4 23 33-55 23-45 (189)
449 1gwn_A RHO-related GTP-binding 96.0 0.004 1.4E-07 46.6 3.0 25 31-55 27-51 (205)
450 3euj_A Chromosome partition pr 96.0 0.004 1.4E-07 53.1 3.3 24 33-56 30-53 (483)
451 1qvr_A CLPB protein; coiled co 96.0 0.0041 1.4E-07 56.6 3.6 23 34-56 590-612 (854)
452 1h65_A Chloroplast outer envel 96.0 0.007 2.4E-07 47.3 4.4 26 30-55 37-62 (270)
453 2dpy_A FLII, flagellum-specifi 96.0 0.0042 1.4E-07 52.4 3.3 28 30-57 155-182 (438)
454 2o52_A RAS-related protein RAB 95.9 0.0041 1.4E-07 46.1 2.9 23 32-54 25-47 (200)
455 1ko7_A HPR kinase/phosphatase; 95.9 0.0051 1.7E-07 49.6 3.5 31 32-63 144-174 (314)
456 3ozx_A RNAse L inhibitor; ATP 95.9 0.0039 1.3E-07 53.9 3.0 26 31-56 293-318 (538)
457 1zbd_A Rabphilin-3A; G protein 95.9 0.005 1.7E-07 45.4 3.2 23 33-55 9-31 (203)
458 2j9r_A Thymidine kinase; TK1, 95.9 0.0076 2.6E-07 45.9 4.2 27 30-56 26-52 (214)
459 1yqt_A RNAse L inhibitor; ATP- 95.9 0.005 1.7E-07 53.2 3.5 26 31-56 311-336 (538)
460 3a1s_A Iron(II) transport prot 95.9 0.004 1.4E-07 48.6 2.7 23 32-54 5-27 (258)
461 2x77_A ADP-ribosylation factor 95.9 0.0037 1.3E-07 45.6 2.3 25 30-54 20-44 (189)
462 4a82_A Cystic fibrosis transme 95.9 0.0025 8.7E-08 55.5 1.6 27 30-56 365-391 (578)
463 3cbq_A GTP-binding protein REM 95.8 0.0038 1.3E-07 46.2 2.4 22 33-54 24-45 (195)
464 2ew1_A RAS-related protein RAB 95.8 0.0057 1.9E-07 45.6 3.2 24 32-55 26-49 (201)
465 1xp8_A RECA protein, recombina 95.8 0.0055 1.9E-07 50.5 3.3 35 30-64 72-111 (366)
466 2bcg_Y Protein YP2, GTP-bindin 95.8 0.0059 2E-07 45.2 3.2 22 33-54 9-30 (206)
467 3b1v_A Ferrous iron uptake tra 95.8 0.0061 2.1E-07 48.0 3.4 24 32-55 3-26 (272)
468 3bk7_A ABC transporter ATP-bin 95.8 0.005 1.7E-07 54.0 3.2 27 30-56 115-141 (607)
469 1knx_A Probable HPR(Ser) kinas 95.8 0.0063 2.2E-07 49.0 3.5 31 32-63 147-177 (312)
470 1tf7_A KAIC; homohexamer, hexa 95.8 0.0053 1.8E-07 52.8 3.2 27 30-56 279-305 (525)
471 3bk7_A ABC transporter ATP-bin 95.8 0.0058 2E-07 53.6 3.5 25 31-55 381-405 (607)
472 3lxw_A GTPase IMAP family memb 95.8 0.0056 1.9E-07 47.3 3.1 25 31-55 20-44 (247)
473 1jwy_B Dynamin A GTPase domain 95.8 0.012 4.3E-07 46.6 5.2 25 31-55 23-47 (315)
474 2fv8_A H6, RHO-related GTP-bin 95.8 0.0061 2.1E-07 45.3 3.2 24 32-55 25-48 (207)
475 1t9h_A YLOQ, probable GTPase E 95.7 0.0019 6.6E-08 51.9 0.4 25 31-55 172-196 (307)
476 1ni3_A YCHF GTPase, YCHF GTP-b 95.7 0.0063 2.2E-07 50.5 3.5 25 30-54 18-42 (392)
477 3qf4_A ABC transporter, ATP-bi 95.7 0.0037 1.3E-07 54.6 2.1 27 30-56 367-393 (587)
478 2aka_B Dynamin-1; fusion prote 95.7 0.011 3.6E-07 46.6 4.6 25 31-55 25-49 (299)
479 3q3j_B RHO-related GTP-binding 95.7 0.0075 2.6E-07 45.3 3.6 25 31-55 26-50 (214)
480 3io5_A Recombination and repai 95.7 0.0062 2.1E-07 49.3 3.2 26 30-56 27-52 (333)
481 3iby_A Ferrous iron transport 95.7 0.0059 2E-07 47.6 3.1 22 34-55 3-24 (256)
482 2j0v_A RAC-like GTP-binding pr 95.7 0.0074 2.5E-07 44.9 3.5 25 31-55 8-32 (212)
483 1ega_A Protein (GTP-binding pr 95.7 0.0064 2.2E-07 48.5 3.2 24 32-55 8-31 (301)
484 3szr_A Interferon-induced GTP- 95.7 0.0085 2.9E-07 52.6 4.2 22 34-55 47-68 (608)
485 2r8r_A Sensor protein; KDPD, P 95.7 0.01 3.5E-07 45.6 4.2 24 33-56 7-30 (228)
486 3j16_B RLI1P; ribosome recycli 95.7 0.007 2.4E-07 53.1 3.7 23 33-55 379-401 (608)
487 2gco_A H9, RHO-related GTP-bin 95.7 0.007 2.4E-07 44.8 3.2 24 32-55 25-48 (201)
488 3i8s_A Ferrous iron transport 95.7 0.0071 2.4E-07 47.5 3.3 24 32-55 3-26 (274)
489 2q6t_A DNAB replication FORK h 95.7 0.0079 2.7E-07 50.6 3.8 34 30-63 198-237 (444)
490 2il1_A RAB12; G-protein, GDP, 95.7 0.007 2.4E-07 44.4 3.1 22 33-54 27-48 (192)
491 2cjw_A GTP-binding protein GEM 95.6 0.0075 2.6E-07 44.5 3.3 23 33-55 7-29 (192)
492 2hup_A RAS-related protein RAB 95.6 0.0074 2.5E-07 44.7 3.2 23 32-54 29-51 (201)
493 2f7s_A C25KG, RAS-related prot 95.6 0.0076 2.6E-07 45.0 3.3 23 32-54 25-47 (217)
494 2fu5_C RAS-related protein RAB 95.6 0.0044 1.5E-07 44.9 1.8 22 33-54 9-30 (183)
495 3f9v_A Minichromosome maintena 95.6 0.0051 1.8E-07 53.8 2.4 26 34-59 329-354 (595)
496 2qnr_A Septin-2, protein NEDD5 95.6 0.0056 1.9E-07 48.9 2.4 22 33-54 19-40 (301)
497 2atx_A Small GTP binding prote 95.6 0.0081 2.8E-07 43.9 3.2 23 33-55 19-41 (194)
498 3qks_A DNA double-strand break 95.5 0.0097 3.3E-07 44.6 3.5 26 32-57 23-48 (203)
499 3qf7_A RAD50; ABC-ATPase, ATPa 95.5 0.008 2.8E-07 49.3 3.3 20 34-53 25-44 (365)
500 4dhe_A Probable GTP-binding pr 95.5 0.0041 1.4E-07 46.6 1.4 26 30-55 27-52 (223)
No 1
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=100.00 E-value=3.1e-34 Score=226.35 Aligned_cols=183 Identities=51% Similarity=0.904 Sum_probs=168.8
Q ss_pred ccCCCCCHHHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHH
Q 029307 7 ANLEDVPSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD 86 (195)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~ 86 (195)
+++++.+..+++.++.++|.+..++|++|+|+|+|||||||+|+.|++++|+.+++.++++++.+..++..+..+.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~ 83 (243)
T 3tlx_A 4 ENLENFSTIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIIN 83 (243)
T ss_dssp -----CCHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHH
T ss_pred chhhhcchHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHh
Confidence 56788899999999999999887889999999999999999999999999999999999999999889999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 029307 87 KGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSG 166 (195)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g 166 (195)
.+..++++.+..++...+.......+||+|++|++..+...|.+.+...+..++.+|+|++|++++.+|+.+|+.++.+|
T Consensus 84 ~g~~~~~~~~~~~~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g 163 (243)
T 3tlx_A 84 EGKLVDDQMVLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSG 163 (243)
T ss_dssp TTCCCCHHHHHHHHHHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT
T ss_pred cCCCCcHHHHHHHHHHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccC
Confidence 99999999999999999887666779999999999999999988888888889999999999999999999999999999
Q ss_pred ceeeCCCCCCCCCCCCCCCCCcc
Q 029307 167 RTYHTKFAPPKVPGVDDVSRCNW 189 (195)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~ 189 (195)
+.||..|+||..++.|+.||++|
T Consensus 164 ~~y~~~~~pp~~~~~~~~~~~~l 186 (243)
T 3tlx_A 164 RIYHKIFNPPKVPFRDDVTNEPL 186 (243)
T ss_dssp EEEETTTBCCSSTTBCTTTCCBC
T ss_pred cccccccCCCcccCccccccccc
Confidence 99999999999999999999976
No 2
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=1.4e-33 Score=219.78 Aligned_cols=158 Identities=50% Similarity=0.873 Sum_probs=147.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
|...|+|+|||||||+|+.|+++||+.+|++++++|+.+..++.+|+.+.+++.++..++++.+..++..++....+..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~g 88 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANG 88 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTTC
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999988766779
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCCceeeCCCCCCCCCCCCCCCCCcc--c
Q 029307 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVSRCNW--R 190 (195)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~ 190 (195)
||+||||++..|...|.+ .+..++.||+|++|++++.+|+..|+.|+.+|+.||..|+||..+++||.||++| |
T Consensus 89 ~ILDGfPRt~~Qa~~L~~----~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R 164 (230)
T 3gmt_A 89 YLFDGFPRTIAQADAMKE----AGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQR 164 (230)
T ss_dssp EEEESCCCSHHHHHHHHH----TTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred eEecCCCCcHHHHHHHHH----hCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccC
Confidence 999999999999887653 4567899999999999999999999999999999999999999999999999977 7
Q ss_pred cCCC
Q 029307 191 TFDS 194 (195)
Q Consensus 191 ~~~~ 194 (195)
++|.
T Consensus 165 ~DD~ 168 (230)
T 3gmt_A 165 DDDK 168 (230)
T ss_dssp GGGS
T ss_pred CCCC
Confidence 7663
No 3
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=100.00 E-value=7.9e-32 Score=207.61 Aligned_cols=142 Identities=53% Similarity=0.898 Sum_probs=135.9
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
|+|+|.|||||||+|+|+.|+++||+.|||.++++|+++..++.+|..+..++..+..++++++..++..++.. ..+
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~---~~~ 77 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK---HGN 77 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS---SSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc---CCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999998865 357
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCCceeeCCCCCCC
Q 029307 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPK 177 (195)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~~~ 177 (195)
||+||||++..|+..|.+.+...+..++.||+|++|.+++.+|+..|+.+..+|+.||..++||.
T Consensus 78 ~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~ 142 (206)
T 3sr0_A 78 VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPP 142 (206)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCC
T ss_pred eEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCC
Confidence 99999999999999999999888889999999999999999999999999999999999999986
No 4
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.97 E-value=6.9e-30 Score=197.39 Aligned_cols=157 Identities=50% Similarity=0.878 Sum_probs=147.5
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
|+|+|+|+|||||||+|+.|++++|+.+++.|+++++.+..++..+..+.+.+..+..+++..+..++...+.....+.+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERG 80 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCC
Confidence 57999999999999999999999999999999999999998999999999999999999999999999998887666779
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCCceeeCCCCCCCCCCCCCCCCCcc
Q 029307 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVSRCNW 189 (195)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 189 (195)
+|+|++|.+..+...+.+.+...+..++.+|+|++|++++.+|+.+|+.|+.+|+.||..+.||..+++||.||+++
T Consensus 81 ~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l 157 (216)
T 3dl0_A 81 FLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGEL 157 (216)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccc
Confidence 99999999999999998888777788999999999999999999999999999999999999999999999999865
No 5
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.97 E-value=2.1e-29 Score=194.57 Aligned_cols=157 Identities=49% Similarity=0.858 Sum_probs=147.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
|+|+|+|+|||||||+|+.|++++|+.+++.|+++++.+..++..+..+.+.+..+..+++..+..++...+.....+.+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKG 80 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCc
Confidence 57999999999999999999999999999999999999998899999999999999999999999999998887666779
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCCceeeCCCCCCCCCCCCCCCCCcc
Q 029307 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVSRCNW 189 (195)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 189 (195)
+|+|++|.+..+...+.+.+...+..++.+|+|++|.+++.+|+.+|+.|+.+|+.||..+.||..+++|+.||+++
T Consensus 81 ~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l 157 (216)
T 3fb4_A 81 FLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGEL 157 (216)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBE
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCcc
Confidence 99999999999999998888777788999999999999999999999999999999999999999999999999865
No 6
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.97 E-value=3.6e-29 Score=193.89 Aligned_cols=161 Identities=48% Similarity=0.862 Sum_probs=143.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 109 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 109 (195)
.++++|+|+|+|||||||+++.|++++|+.+++.|+++++....++..++.+++.+..+..++++.+..++...+.....
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~ 82 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVC 82 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc
Confidence 45679999999999999999999999999999999999998887888888999988888888999888888888877666
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCCceeeCCCCCCCCCCCCCCCCCcc
Q 029307 110 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVSRCNW 189 (195)
Q Consensus 110 ~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 189 (195)
+.++|+||+|++..+...+.+.+...+..|+.+|||++|++++.+|+..|..++.+|+.||..|.||..++.|+.|+.+|
T Consensus 83 ~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l 162 (217)
T 3be4_A 83 VNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPL 162 (217)
T ss_dssp TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBC
T ss_pred CCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCcccccccccccc
Confidence 78999999999998888887766666677899999999999999999999999999999999999999999999999876
Q ss_pred c
Q 029307 190 R 190 (195)
Q Consensus 190 ~ 190 (195)
-
T Consensus 163 ~ 163 (217)
T 3be4_A 163 V 163 (217)
T ss_dssp B
T ss_pred c
Confidence 3
No 7
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.96 E-value=5.7e-28 Score=189.04 Aligned_cols=161 Identities=52% Similarity=0.959 Sum_probs=144.8
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 108 (195)
+.+++.|+|+|+|||||||+++.|++++++.+++.++++++.+..++..++.+++.+..+..++++.+..++...+....
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~ 92 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPP 92 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc
Confidence 34567899999999999999999999999999999999999888788899999999999888999999888888887655
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCCceeeCCCCCCCCCCCCCCCCCc
Q 029307 109 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVSRCN 188 (195)
Q Consensus 109 ~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 188 (195)
.+.+||+|+|+++..+...|.+++...+..++.+|||++|++++.+|+..|..++.+|+.||..|.||..+++|+.||.+
T Consensus 93 ~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~ 172 (233)
T 1ak2_A 93 CKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEP 172 (233)
T ss_dssp GTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCB
T ss_pred ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCcccccccccccc
Confidence 56789999999999888888777766566789999999999999999999999999999999999999999999999876
Q ss_pred c
Q 029307 189 W 189 (195)
Q Consensus 189 ~ 189 (195)
+
T Consensus 173 l 173 (233)
T 1ak2_A 173 L 173 (233)
T ss_dssp C
T ss_pred c
Confidence 5
No 8
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.95 E-value=2e-27 Score=184.88 Aligned_cols=157 Identities=37% Similarity=0.635 Sum_probs=138.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
|+|+|+|+|||||||+++.|++++|+.+++.|+++++.+..++..++.+++.+..+..++++.+..++...+.... +.+
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~-g~~ 79 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKG-KDG 79 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHC-TTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhccc-CCe
Confidence 5799999999999999999999999999999999999877777889999999988888888888888887776533 568
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCC-CCceeeCCCCCCCCCC-CCCCCCCccc
Q 029307 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPS-SGRTYHTKFAPPKVPG-VDDVSRCNWR 190 (195)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~-~g~~~~~~~~~~~~~~-~~~~~~~~~~ 190 (195)
+|+|+++++..+...+.+.+...+..++.+|||++|++++.+|+.+|..+.. +|+.||..|+||..++ +||.||++|-
T Consensus 80 vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l~ 159 (223)
T 2xb4_A 80 WLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALS 159 (223)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBEE
T ss_pred EEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCccccccccccccccc
Confidence 9999999998888887776655666799999999999999999999987767 9999999999999999 9999998763
No 9
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.95 E-value=7.9e-27 Score=180.83 Aligned_cols=159 Identities=50% Similarity=0.905 Sum_probs=138.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-CCC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK-KPS 108 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~ 108 (195)
+++++|+|+|+|||||||+++.|++++++.+++.|+++++....++..++.+++++..+..++++.+..++...+. ...
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~ 81 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPA 81 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhccc
Confidence 4568999999999999999999999999999999999999888888899999999999888999988888888776 444
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCCceeeCCCCCCCCCCCCCCC-CC
Q 029307 109 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVS-RC 187 (195)
Q Consensus 109 ~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~~~~~~~~~~~-~~ 187 (195)
.+.++|+|+++++..+...+...+...+..+|.+|||++|++++.+|+..|..++.+|+.||..+.||..+. ||.| +.
T Consensus 82 ~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~-~d~~~~~ 160 (220)
T 1aky_A 82 CKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDM-KDDVTGE 160 (220)
T ss_dssp GGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTT-BCTTTCC
T ss_pred cCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCcccc-ccccccc
Confidence 466899999999998888887776666778999999999999999999999999999999999999998875 4444 33
Q ss_pred cc
Q 029307 188 NW 189 (195)
Q Consensus 188 ~~ 189 (195)
+|
T Consensus 161 ~l 162 (220)
T 1aky_A 161 AL 162 (220)
T ss_dssp BC
T ss_pred cc
Confidence 44
No 10
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.95 E-value=1e-26 Score=180.14 Aligned_cols=146 Identities=32% Similarity=0.496 Sum_probs=117.9
Q ss_pred CHHHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCC
Q 029307 13 PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS 92 (195)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~ 92 (195)
|.+.++..-........+++++|+|.|||||||+|+|+.|+++||+.||+.++++|+++..++++|+.+..++..+..+|
T Consensus 10 ~~~~~~p~~~~~~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVp 89 (217)
T 3umf_A 10 HSSGLVPRGSHMTDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVP 89 (217)
T ss_dssp --------------CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCC
T ss_pred cccccCCCCccccchhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCC
Confidence 44444444333333335677899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC-CCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 93 DDLVVGIIDEAMKK-PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 93 ~~~~~~~l~~~l~~-~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
++++..++..++.. .+...+||+||||++..|...|.+.+ ..++.+|+|++|.+++.+|+..|...
T Consensus 90 de~~~~lv~~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~----~~~~~vi~l~v~~e~~~~Rl~~R~~~ 156 (217)
T 3umf_A 90 LEVVLALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEV----CPCLCVINFDVSEEVMRKRLLKRAET 156 (217)
T ss_dssp HHHHHHHHHHHHHHHTTTCSEEEEETBCSSHHHHHHHHHHT----CCCSEEEEEECCHHHHHHHHSCC---
T ss_pred HHHHHHHHHHHHhhccccccCcccccCCCcHHHHHHHHHhC----CccCEEEeccCCHHHHHHHHhccccc
Confidence 99999999998865 34466999999999999999887654 46889999999999999999999643
No 11
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.94 E-value=2.3e-26 Score=177.62 Aligned_cols=154 Identities=47% Similarity=0.848 Sum_probs=136.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
|.|+|+|+|||||||+++.|++++|+.+++.|+++++.+..++..++.+++.+..+..++++.+..++...+.......+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~ 80 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG 80 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCC
Confidence 46999999999999999999999999999999999998877888888888888888889999998988888876554568
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCCceeeCCCCCCCCCCCCCCCCCccc
Q 029307 113 FILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVSRCNWR 190 (195)
Q Consensus 113 ~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 190 (195)
+|+|++|++..+...|. ..+..++.+|+|++|++++.+|+.+|..++.+|+.||..+.||..++.|+.|+.+|.
T Consensus 81 ~i~dg~~~~~~~~~~l~----~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~ 154 (214)
T 1e4v_A 81 FLLDGFPRTIPQADAMK----EAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELT 154 (214)
T ss_dssp EEEESCCCSHHHHHHHH----HTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCB
T ss_pred EEEeCCCCCHHHHHHHH----hcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccc
Confidence 99999999988766553 334568999999999999999999999899999999999999999999999998763
No 12
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.93 E-value=1.3e-24 Score=169.10 Aligned_cols=155 Identities=40% Similarity=0.708 Sum_probs=132.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 109 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 109 (195)
.++++|+|+|+|||||||+++.|++.+|+.+++.|++++.....++..|..+.+++..+..++++....++...+... .
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~-~ 83 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL-T 83 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC-T
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc-c
Confidence 456799999999999999999999999999999999999988778888999999888888888887777776666543 3
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCCceeeCCCCCCCCCCCCCCCCCcc
Q 029307 110 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVSRCNW 189 (195)
Q Consensus 110 ~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 189 (195)
+.++|+|+++.+..+...+... ..++.+|||++|++++.+|+.+|..++.+|+.|+..+.||..++.|+.|+++|
T Consensus 84 ~~~~vid~~~~~~~~~~~l~~~-----~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l 158 (227)
T 1zd8_A 84 QYSWLLDGFPRTLPQAEALDRA-----YQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPL 158 (227)
T ss_dssp TSCEEEESCCCSHHHHHHHHTT-----SCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBC
T ss_pred CCCEEEeCCCCCHHHHHHHHHh-----cCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccc
Confidence 4679999999988776554432 35789999999999999999999888888999999999999999999999877
Q ss_pred c
Q 029307 190 R 190 (195)
Q Consensus 190 ~ 190 (195)
.
T Consensus 159 ~ 159 (227)
T 1zd8_A 159 I 159 (227)
T ss_dssp B
T ss_pred c
Confidence 4
No 13
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.91 E-value=1.9e-23 Score=161.90 Aligned_cols=148 Identities=39% Similarity=0.758 Sum_probs=124.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 109 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 109 (195)
+++++|+|+|+|||||||+++.|++++++.+++.|++++.....++..|+.+.+++..+..++++.+..++...+.....
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA 82 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc
Confidence 35678999999999999999999999999999999999997777888899999999888888988887777666543221
Q ss_pred -CCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCCceeeCCCCCCCCCCC
Q 029307 110 -QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGV 181 (195)
Q Consensus 110 -~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~~~~~~~ 181 (195)
..++|+||++++..+...+. ..+..++++|||+++++++.+|+..|..++.+|+.|+..+.||..+.+
T Consensus 83 ~~~~~vidg~~~~~~~~~~l~----~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~ 151 (222)
T 1zak_A 83 QENGWLLDGYPRSYSQAMALE----TLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEI 151 (222)
T ss_dssp HHTCEEEESCCCSHHHHHHHH----TTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGG
T ss_pred cCCcEEEECCCCCHHHHHHHH----HcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCccccc
Confidence 35788999999886665543 234568899999999999999999999889999999999998876654
No 14
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.89 E-value=1.1e-21 Score=149.70 Aligned_cols=132 Identities=40% Similarity=0.776 Sum_probs=115.3
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 108 (195)
+..|++|+|+|+|||||||+++.|++.+|+.+++.|+++++.+..+...+..+.+.+..+..++.+.....+...+....
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~ 96 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPD 96 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhccc
Confidence 45678999999999999999999999999999999999999877788888889998888888888888777777776544
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 109 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 109 ~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
.+.++|+|+++.+..+...+...+...+..++.+|||++|++++.+|+.+|.
T Consensus 97 ~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~ 148 (201)
T 2cdn_A 97 AANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG 148 (201)
T ss_dssp GTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 4568999999999988888887777666678999999999999999999884
No 15
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.85 E-value=3.7e-20 Score=139.23 Aligned_cols=125 Identities=40% Similarity=0.688 Sum_probs=107.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 110 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 110 (195)
++++|+|+|+|||||||+++.|++++|+.+++.|+++++.+..+...+..+.+.+..+...++......+...+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~~---- 78 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAE---- 78 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCCS----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhcC----
Confidence 4678999999999999999999999999999999999988777788888899999888888888877777766542
Q ss_pred CcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 111 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 111 ~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
++|+|+++.+..+...+...+...+..++.+|||++|++++.+|+.+|.
T Consensus 79 -~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 127 (186)
T 3cm0_A 79 -RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRA 127 (186)
T ss_dssp -EEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred -CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 3999999999888777776666555568899999999999999999884
No 16
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.84 E-value=1.5e-19 Score=136.12 Aligned_cols=129 Identities=29% Similarity=0.476 Sum_probs=109.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 110 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 110 (195)
.+++|+|+|+|||||||+++.|++.+|+.+++.|+++++....+...+..+.+.+..+...+.......+...+... .+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~-~~ 83 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN-QG 83 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS-TT
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc-CC
Confidence 35689999999999999999999999999999999999888777888899999888888888887777777777654 45
Q ss_pred CcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 111 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 111 ~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
..+|+|+++.+..+...+...+... ..++.+|||++|++++.+|+.+|..
T Consensus 84 ~~vi~d~~~~~~~~~~~~~~~~~~~-~~~~~vi~l~~~~e~~~~R~~~R~~ 133 (194)
T 1qf9_A 84 KNFLVDGFPRNEENNNSWEENMKDF-VDTKFVLFFDCPEEVMTQRLLKRGE 133 (194)
T ss_dssp CCEEEETCCCSHHHHHHHHHHHTTT-CEEEEEEEEECCHHHHHHHHHHHHT
T ss_pred CCEEEeCcCCCHHHHHHHHHHHhcc-CCCCEEEEEECCHHHHHHHHHhccc
Confidence 6899999999998877776655422 3578999999999999999998853
No 17
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.84 E-value=1.1e-19 Score=137.55 Aligned_cols=126 Identities=33% Similarity=0.576 Sum_probs=105.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CCC
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK-PSC 109 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~ 109 (195)
++++|+|+|+|||||||+++.|++.+|+.+++.|++++.....+...+..+.+.+..+..++.+.+...+...+.. ...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~ 87 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVNT 87 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcccc
Confidence 5679999999999999999999999999999999999988777778888898888888788887776666655543 234
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 110 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 110 ~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
+.++|+|++|.+..+...+...+ ..++.+|||++|++++.+|+.+|.
T Consensus 88 ~~~vi~d~~~~~~~~~~~~~~~~----~~~~~vi~l~~~~e~~~~R~~~R~ 134 (196)
T 2c95_A 88 SKGFLIDGYPREVQQGEEFERRI----GQPTLLLYVDAGPETMTQRLLKRG 134 (196)
T ss_dssp CSCEEEESCCCSHHHHHHHHHHT----CCCSEEEEEECCHHHHHHHHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHccC
Confidence 57899999999987776655433 468899999999999999999885
No 18
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.83 E-value=2.4e-19 Score=135.93 Aligned_cols=126 Identities=28% Similarity=0.544 Sum_probs=105.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CCC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP-SCQ 110 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~ 110 (195)
+++|+|+|+|||||||+++.|++++|+.+++.|+++++....+...+..+.+.+..+..++.+.+...+...+... ..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~ 91 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGDT 91 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcccccC
Confidence 5799999999999999999999999999999999999888767788888888888887888877777666655432 235
Q ss_pred CcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 111 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 111 ~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
.++|+|+++.+..+...+.+.+ ..++.+|||++|++++.+|+.+|..
T Consensus 92 ~~vi~dg~~~~~~~~~~l~~~~----~~~~~~i~l~~~~~~~~~R~~~R~~ 138 (199)
T 2bwj_A 92 RGFLIDGYPREVKQGEEFGRRI----GDPQLVICMDCSADTMTNRLLQMSR 138 (199)
T ss_dssp SCEEEETCCSSHHHHHHHHHHT----CCCSEEEEEECCHHHHHHHHHHTCC
T ss_pred ccEEEeCCCCCHHHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHcCCC
Confidence 6899999999988776665432 2578999999999999999999964
No 19
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.81 E-value=4.9e-19 Score=134.96 Aligned_cols=128 Identities=27% Similarity=0.539 Sum_probs=102.3
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHH-cCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA-AKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 107 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 107 (195)
.+++++|+|+|+|||||||+++.|++.+|+.+++.|+++++... .+...++.+++++.++...+++....++...+...
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~ 91 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN 91 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhh
Confidence 45567999999999999999999999999999999999988754 46677888888888887777776666555544321
Q ss_pred -CCC-CcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 108 -SCQ-KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 108 -~~~-~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
..+ ..||+||++.+..+...+...+ ..++.+|||++|++++.+|+.+|.
T Consensus 92 l~~g~~~~i~dg~~~~~~~~~~~~~~~----~~~~~~i~l~~~~e~~~~Rl~~R~ 142 (203)
T 1ukz_A 92 VKANKHKFLIDGFPRKMDQAISFERDI----VESKFILFFDCPEDIMLERLLERG 142 (203)
T ss_dssp HHTTCCEEEEETCCCSHHHHHHHHHHT----CCCSEEEEEECCHHHHHHHHHHHH
T ss_pred hccCCCeEEEeCCCCCHHHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHhcc
Confidence 123 4799999999988877665543 247899999999999999999885
No 20
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.81 E-value=1e-18 Score=131.70 Aligned_cols=128 Identities=26% Similarity=0.493 Sum_probs=101.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHc-CChHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----C
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA-KTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK----K 106 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~----~ 106 (195)
|++|+|+|+|||||||+++.|++++|+.+++.|+++++.... ++..++.+++.+..+...+......++...+. .
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~ 82 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAA 82 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhcc
Confidence 679999999999999999999999999999999999887653 45567888888877777777665554443332 2
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 107 PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 107 ~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
...+..+|+|+++.+..+...+.+.+.. ...++.+|||++|++++.+|+.+|.
T Consensus 83 ~~~~~~vi~dg~~~~~~~~~~~~~~~~~-~~~~~~~i~l~~~~e~~~~R~~~R~ 135 (196)
T 1tev_A 83 NAQKNKFLIDGFPRNQDNLQGWNKTMDG-KADVSFVLFFDCNNEICIERCLERG 135 (196)
T ss_dssp CTTCCEEEEESCCCSHHHHHHHHHHHTT-TCEEEEEEEEECCHHHHHHHHHHHH
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHHhcc-cCCCCEEEEEECCHHHHHHHHHccc
Confidence 2335689999999998887766655432 2357899999999999999999885
No 21
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.81 E-value=3.8e-18 Score=134.05 Aligned_cols=155 Identities=39% Similarity=0.681 Sum_probs=122.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 109 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 109 (195)
.++.+|+|+|++||||||+++.|++++|+.+++.++++..........+..+...++++..+++..+.+.+...+... .
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~-~ 103 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR-R 103 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC-T
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-C
Confidence 356899999999999999999999999999999999988766555566777777777777888877777776655433 3
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCCCCceeeCCCCCCCCCCCCCCCCCcc
Q 029307 110 QKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVSRCNW 189 (195)
Q Consensus 110 ~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 189 (195)
+.++++++++....+...+... ..++++++|++|++++.+|+..|..+..+||.+.....+|...-+|+.|+||+
T Consensus 104 ~~~~il~g~~~~~~~~~~l~~~-----~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~ 178 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEALDKI-----CEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPL 178 (246)
T ss_dssp TSCEEEESCCCSHHHHHHHHTT-----CCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBC
T ss_pred CCeEEEECCCCCHHHHHHHHhh-----cCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCccccccccccccc
Confidence 4578999998876544443221 35779999999999999999999888888987655578888888888899887
Q ss_pred c
Q 029307 190 R 190 (195)
Q Consensus 190 ~ 190 (195)
.
T Consensus 179 ~ 179 (246)
T 2bbw_A 179 V 179 (246)
T ss_dssp B
T ss_pred c
Confidence 4
No 22
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.72 E-value=2.2e-16 Score=116.63 Aligned_cols=119 Identities=19% Similarity=0.267 Sum_probs=87.3
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAK----TPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 108 (195)
++|+|+|+|||||||+++.| +.+|+.+++.++++++..... ............. .....+...+...+.. .
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~-~ 76 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGT-S 76 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCS-C
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHh-c
Confidence 68999999999999999999 999999999999998876532 1222223222221 1123344555555533 3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 109 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 109 ~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
.+..+|+||+ ....+...+.+.+. .++.+|||++|++++.+|+.+|..
T Consensus 77 ~~~~vi~dg~-~~~~~~~~l~~~~~----~~~~~i~l~~~~~~~~~R~~~R~~ 124 (179)
T 3lw7_A 77 NHDLVVFDGV-RSLAEVEEFKRLLG----DSVYIVAVHSPPKIRYKRMIERLR 124 (179)
T ss_dssp CCSCEEEECC-CCHHHHHHHHHHHC----SCEEEEEEECCHHHHHHHHHTCC-
T ss_pred CCCeEEEeCC-CCHHHHHHHHHHhC----CCcEEEEEECCHHHHHHHHHhccC
Confidence 4668999998 88888888777653 466899999999999999999953
No 23
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.67 E-value=1.3e-15 Score=113.39 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=84.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHH-HhCCceeehHHHHHHHHHcCCh-----HHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKD-EYCLCHLATGDMLRAAVAAKTP-----LGIKAKEAMDKGELVSDDLVVGIIDEAMK 105 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~-~~~~~~i~~d~l~r~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 105 (195)
|++|+|+|+|||||||+++.|++ .+++.+++.| .+++....... ........ ....+...+...+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d-~~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~ 73 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEERDEYKYTKKKEGI-------VTGMQFDTAKSILY 73 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCCGGGCCCCHHHHHH-------HHHHHHHHHHHHHT
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHH-HHHHHhhCCCccchhhhchhhhhH-------HHHHHHHHHHHHHh
Confidence 46899999999999999999999 6899999994 55655442211 10000000 01223344555553
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 106 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 106 ~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
....+..+|+|+++.+..++..+.+.+...+.. ..+|||++|.+++.+|+.+|..+
T Consensus 74 ~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~-~~~i~l~~~~~~~~~R~~~R~~~ 129 (181)
T 1ly1_A 74 GGDSVKGVIISDTNLNPERRLAWETFAKEYGWK-VEHKVFDVPWTELVKRNSKRGTK 129 (181)
T ss_dssp SCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCE-EEEEECCCCHHHHHHHHTTCGGG
T ss_pred hccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCC-EEEEEEeCCHHHHHHHHhccccC
Confidence 324467899999998888877777665544433 37999999999999999999753
No 24
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.61 E-value=4.5e-15 Score=112.94 Aligned_cols=116 Identities=18% Similarity=0.212 Sum_probs=79.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHH---HHHHHHHHcC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV---VGIIDEAMKK 106 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~l~~ 106 (195)
..+++|+|+|++||||||+++.|++.+|+.+++.|++...... ..+..+..+.+... ...+...+
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~----------~~~~~g~~~~~~~~~~~~~~l~~~~-- 83 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENI----------RKMSEGIPLTDDDRWPWLAAIGERL-- 83 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHH----------HHHHHTCCCCHHHHHHHHHHHHHHH--
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhH----------HHHhcCCCCCchhhHHHHHHHHHHH--
Confidence 3457999999999999999999999999999999776422111 11122323333222 22223333
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 107 PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 107 ~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
..+..+|+|+..........+... ...+..+|||++|.+++.+|+.+|..+
T Consensus 84 -~~~~~vivd~~~~~~~~~~~l~~~----~~~~~~vi~l~~~~e~~~~Rl~~R~~~ 134 (202)
T 3t61_A 84 -ASREPVVVSCSALKRSYRDKLRES----APGGLAFVFLHGSESVLAERMHHRTGH 134 (202)
T ss_dssp -TSSSCCEEECCCCSHHHHHHHHHT----STTCCEEEEEECCHHHHHHHHHHHHSS
T ss_pred -hcCCCEEEECCCCCHHHHHHHHHh----cCCCeEEEEEeCCHHHHHHHHHHhhcc
Confidence 335679999887776666655443 234568999999999999999999753
No 25
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.60 E-value=1.2e-14 Score=109.28 Aligned_cols=124 Identities=15% Similarity=0.175 Sum_probs=75.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHc-CChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA-KTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 108 (195)
+++++|+|+|+|||||||+++.|++.+|+.+++.|.+....... .......... +... ....+...+...+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~l~--- 75 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRR-VGAT---AIMMLYHTAATILQ--- 75 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHH-HHHH---HHHHHHHHHHHHHH---
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHH-hhHH---HHHHHHHHHHHHHh---
Confidence 45789999999999999999999999999999996653332211 0000000000 0000 00111222233333
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 109 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 109 ~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
.+.++|+|+++........+.+ +...+..++.+|||++|++++.+|+.+|..
T Consensus 76 ~g~~vi~d~~~~~~~~~~~~~~-l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~ 127 (193)
T 2rhm_A 76 SGQSLIMESNFRVDLDTERMQN-LHTIAPFTPIQIRCVASGDVLVERILSRIA 127 (193)
T ss_dssp TTCCEEEEECCCHHHHHHHHHH-HHHHSCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred CCCeEEEecCCCCHHHHHHHHH-HHHhcCCeEEEEEEeCCHHHHHHHHHHhcC
Confidence 2567999988732222223322 333344577899999999999999998864
No 26
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.55 E-value=1e-13 Score=111.54 Aligned_cols=128 Identities=16% Similarity=0.154 Sum_probs=83.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh-CCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 110 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~-~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 110 (195)
|++|+|+|+|||||||+++.|++++ |+.+++.| .+++.+..... +.. ..+...........+...+...+.....+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 78 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGGDSV 78 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSCTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhccCC
Confidence 4689999999999999999999985 99999997 56665542110 000 00000000000112233344444221346
Q ss_pred CcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCC
Q 029307 111 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHP 163 (195)
Q Consensus 111 ~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~ 163 (195)
..+|+|+++.+..++..+.+.....+.. ..+|||++|.+++.+|+.+|..+.
T Consensus 79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~-~~~i~l~~~~e~~~~R~~~R~~~~ 130 (301)
T 1ltq_A 79 KGVIISDTNLNPERRLAWETFAKEYGWK-VEHKVFDVPWTELVKRNSKRGTKA 130 (301)
T ss_dssp CEEEECSCCCCHHHHHHHHHHHHHTTCE-EEEEECCCCHHHHHHHHHHCGGGC
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHcCCc-EEEEEEECCHHHHHHHHHhccCCC
Confidence 7899999998888877777666554433 389999999999999999997543
No 27
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.54 E-value=9e-14 Score=104.44 Aligned_cols=117 Identities=23% Similarity=0.236 Sum_probs=73.9
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh---CCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHH-----------HH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV-----------VG 98 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~---~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 98 (195)
|+|+|+|+|||||||+++.|++++ |+.+++.++ ......+..+.+.+..+...+.... ..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 74 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE 74 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999998 899998753 1123345556666655533333211 11
Q ss_pred HHHHHHcCCCCCCcEEEe----------CCCCCH--HHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcC
Q 029307 99 IIDEAMKKPSCQKGFILD----------GFPRTE--VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (195)
Q Consensus 99 ~l~~~l~~~~~~~~~iid----------~~~~~~--~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R 159 (195)
.+...+.. +..+++| |++... .+...+...+ ..+..++.+|||++|++++.+|+.+|
T Consensus 75 ~i~~~l~~---~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~d~vi~l~~~~e~~~~Rl~~r 143 (195)
T 2pbr_A 75 KIIPDLKR---DKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFA-TRGVKPDITLLLDIPVDIALRRLKEK 143 (195)
T ss_dssp THHHHHHT---TCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHH-HTTCCCSEEEEEECCHHHHHHHHHTT
T ss_pred HHHHHHhC---CCEEEECcchhHHHHHccccCCCCHHHHHHHHHHh-hcCCCCCEEEEEeCCHHHHHHHhhcc
Confidence 22222322 4457777 444322 2322222222 22346899999999999999999865
No 28
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.50 E-value=3.3e-13 Score=100.63 Aligned_cols=117 Identities=14% Similarity=0.137 Sum_probs=68.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCcee-ehHHHHHHHHHcCChHHHHHHHHHHcCC--C--CCH--HHHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHL-ATGDMLRAAVAAKTPLGIKAKEAMDKGE--L--VSD--DLVVGIIDEA 103 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i-~~d~l~r~~~~~~~~~~~~~~~~~~~~~--~--~~~--~~~~~~l~~~ 103 (195)
++++|+|+|+|||||||+++.|++++++.++ +.+. + +..+.+.+..+. + ... ..+...+...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~-~----------g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~ 72 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEE-M----------GQALRKLTPGFSGDPQEHPMWIPLMLDALQYA 72 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHH-H----------HHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhh-h----------HHHHHHhCccccchhhhhHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999888 4311 1 112222221110 0 010 2233444444
Q ss_pred HcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 104 MKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 104 l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
+.. .+..+|+|+..........+.+.+...+..+ .+|||++|++++.+|+.+|..
T Consensus 73 l~~--~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~-~~i~l~~~~e~~~~R~~~R~~ 127 (183)
T 2vli_A 73 SRE--AAGPLIVPVSISDTARHRRLMSGLKDRGLSV-HHFTLIAPLNVVLERLRRDGQ 127 (183)
T ss_dssp HHH--CSSCEEEEECCCCHHHHHHHHHHHHHTTCCC-EEEEEECCHHHHHHHHHTC--
T ss_pred HHh--CCCcEEEeeeccCHHHHHHHHHHHHhcCCce-EEEEEeCCHHHHHHHHHhccc
Confidence 432 1345788877666555555555555444444 679999999999999999863
No 29
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.50 E-value=1.5e-13 Score=101.14 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=68.4
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCCCC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKPSCQK 111 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~ 111 (195)
|+|+|+|+|||||||+++.|++++|+.+++.|++.+.... .. +.+.+.. +..... .+...+...+.. ..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g--~~----~~~~~~~~~~~~~~-~~~~~~l~~l~~---~~ 70 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREG--LS----IPQIFEKKGEAYFR-KLEFEVLKDLSE---KE 70 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT--SC----HHHHHHHSCHHHHH-HHHHHHHHHHTT---SS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcC--CC----HHHHHHHhChHHHH-HHHHHHHHHHhc---cC
Confidence 5799999999999999999999999999999888766542 11 1222211 100000 111112223321 34
Q ss_pred cEEEe-CC--CCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 112 GFILD-GF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 112 ~~iid-~~--~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
.+|++ +. ......... +. .++.+|||++|++++.+|+.+|.
T Consensus 71 ~~Vi~~g~~~~~~~~~~~~----l~----~~~~~i~l~~~~e~~~~R~~~r~ 114 (168)
T 2pt5_A 71 NVVISTGGGLGANEEALNF----MK----SRGTTVFIDIPFEVFLERCKDSK 114 (168)
T ss_dssp SEEEECCHHHHTCHHHHHH----HH----TTSEEEEEECCHHHHHHHCBCTT
T ss_pred CeEEECCCCEeCCHHHHHH----HH----cCCEEEEEECCHHHHHHHHhCCC
Confidence 56665 32 222222222 22 26799999999999999999874
No 30
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.48 E-value=2.3e-13 Score=101.93 Aligned_cols=120 Identities=13% Similarity=0.192 Sum_probs=71.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhC-----CceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCC--HHHHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS--DDLVVGIIDEAM 104 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~-----~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l 104 (195)
+++|+|+|+|||||||+++.|+++++ +.+++.++++++........ . .......... ...+...+...+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~i 78 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLV-S---DRDQMRKMDPETQKRIQKMAGRKI 78 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSC-S---SGGGGSSCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCC-C---CHHHHhcCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999999998 99999999888765321100 0 0000000110 111122222222
Q ss_pred cCCCCCCcEEEeCCCCCHHHH--------HHHHHHHhhcCCCcCEEEEEEcCHHHHHH-HHhc--CCC
Q 029307 105 KKPSCQKGFILDGFPRTEVQA--------QKLDEMLEKQGKKVDKVLNFAIDDAVLEE-RITG--RWI 161 (195)
Q Consensus 105 ~~~~~~~~~iid~~~~~~~~~--------~~l~~~l~~~~~~~d~vi~l~~~~e~~~~-Rl~~--R~~ 161 (195)
........+|+|+++...... ..+... .++++|||++|++++.+ |+.+ |..
T Consensus 79 ~~~~~~~~viid~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~l~~~~~~~~~rRl~~~~R~r 140 (192)
T 1kht_A 79 AEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNEL------NPDLIIVVETTGDEILMRRMSDETRVR 140 (192)
T ss_dssp HHHHTTSCEEEECCSEEEETTEEEESSCHHHHHHH------CCSEEEEEECCHHHHHHHHHTSSSCSS
T ss_pred HhhccCCeEEEccceeccccccccccCcHHHHhcc------CCCEEEEEeCCHHHHHHHHhhhcccCC
Confidence 211124579999865311100 111211 36789999999999996 9987 643
No 31
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.47 E-value=8.3e-13 Score=99.45 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=70.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh---CCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHH-------HHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV-------VGIIDE 102 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~---~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~ 102 (195)
++|+|+|++||||||+++.|++.+ |+.++...+ ..+...+..+++.+..+...+.... ...+..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 74 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999 988886532 1234456666666654433332211 111222
Q ss_pred HHcC-CCCCCcEEEeCC----------CC--CHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcC
Q 029307 103 AMKK-PSCQKGFILDGF----------PR--TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (195)
Q Consensus 103 ~l~~-~~~~~~~iid~~----------~~--~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R 159 (195)
+.. ...+..+++|.+ +. .......+.. +......||.+|||++|++++.+|+.+|
T Consensus 75 -i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 142 (197)
T 2z0h_A 75 -IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELND-FATDGLIPDLTFYIDVDVETALKRKGEL 142 (197)
T ss_dssp -HTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHH-HHHTTCCCSEEEEEECCHHHHHHHC---
T ss_pred -HHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHH-HhcCCCCCCEEEEEeCCHHHHHHHHhcc
Confidence 322 223456777743 22 2222222222 2223456899999999999999999998
No 32
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.47 E-value=1.8e-13 Score=103.91 Aligned_cols=113 Identities=15% Similarity=0.185 Sum_probs=69.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 109 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 109 (195)
.++++|+|+|+|||||||+++.|++.+|+.+++.|+++..... ......+...-.. ........++.. +. .
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g--~~i~~~~~~~~~~---~~~~~e~~~l~~-l~---~ 93 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH--KTVGELFTERGEA---GFRELERNMLHE-VA---E 93 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT--SCHHHHHHHHHHH---HHHHHHHHHHHH-HT---T
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC--CcHHHHHHhcChH---HHHHHHHHHHHH-Hh---h
Confidence 4556999999999999999999999999999999888766432 1121111110000 000111122222 22 2
Q ss_pred CCcEEEe---CCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHh-cC
Q 029307 110 QKGFILD---GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT-GR 159 (195)
Q Consensus 110 ~~~~iid---~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~-~R 159 (195)
...+|++ +.+........+.+ ++.+|||++|.+++.+|+. .|
T Consensus 94 ~~~~vi~~ggg~~~~~~~~~~l~~--------~~~vi~L~~~~e~l~~Rl~~~~ 139 (199)
T 3vaa_A 94 FENVVISTGGGAPCFYDNMEFMNR--------TGKTVFLNVHPDVLFRRLRIAK 139 (199)
T ss_dssp CSSEEEECCTTGGGSTTHHHHHHH--------HSEEEEEECCHHHHHHHHHHTG
T ss_pred cCCcEEECCCcEEccHHHHHHHHc--------CCEEEEEECCHHHHHHHHhcCC
Confidence 3557777 33333333333322 5689999999999999998 44
No 33
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.47 E-value=6.6e-14 Score=112.51 Aligned_cols=138 Identities=18% Similarity=0.220 Sum_probs=83.6
Q ss_pred HHHHHHHHHhccc---CCCCCcEEEEEcCCCCChhHHHHHHHHHh--CCceeehHHHHHHHHHcCChHHHHHHHHHHcC-
Q 029307 15 VDLMTELLRRMKC---ASKPDKRLILVGPPGSGKGTQSPIIKDEY--CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG- 88 (195)
Q Consensus 15 ~~~~~~~~~~~~~---~~~~~~iI~i~G~pGsGKSTla~~L~~~~--~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~- 88 (195)
..++++....+.. ....|++|+|+|+|||||||+++.|++.+ ++.+||.|. ++..... .......+....
T Consensus 13 ~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~-~R~~~~~---~~~~~~~~~~~a~ 88 (287)
T 1gvn_B 13 ENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT-FKQQHPN---FDELVKLYEKDVV 88 (287)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHH-HHTTSTT---HHHHHHHHGGGCH
T ss_pred HHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechH-hHHhchh---hHHHHHHccchhh
Confidence 3344444444332 23457799999999999999999999998 788999854 4432110 000000000000
Q ss_pred ---CCCCHHHHHHHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHH----HHHHhcCC
Q 029307 89 ---ELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVL----EERITGRW 160 (195)
Q Consensus 89 ---~~~~~~~~~~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~----~~Rl~~R~ 160 (195)
...........+...+.. +..+|+|+......+...+.+.+...+... .++++.+|++++ .+|+.+|.
T Consensus 89 ~~~~~~~~~~~~~~v~~~l~~---g~~vIld~~~~~~~~~~~~~~~~~~~g~~~-~~i~~~~p~~~~~l~~~~Rl~~R~ 163 (287)
T 1gvn_B 89 KHVTPYSNRMTEAIISRLSDQ---GYNLVIEGTGRTTDVPIQTATMLQAKGYET-KMYVMAVPKINSYLGTIERYETMY 163 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---TCCEEECCCCCCSHHHHHHHHHHHTTTCEE-EEEEECCCHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHhCCCcE-EEEEEECCHHHHHHHHHHHHHHHH
Confidence 000011122333444433 567999999888777777776666554433 578999999999 88887664
No 34
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.47 E-value=1.6e-13 Score=103.08 Aligned_cols=113 Identities=20% Similarity=0.360 Sum_probs=73.7
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHH-hCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCC---CHHHHHHHHHHHH
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDE-YCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELV---SDDLVVGIIDEAM 104 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~-~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~l 104 (195)
..++++|+|+|+|||||||+++.|++. +|+.+++.|+++++... ....+.. +.. ..+ .+......+...+
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~-~~~~~~~----~~~-~~~~r~~~~~~~~~l~~~~ 80 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHF-YTEYDTE----LDT-HIIEEKDEDRLLDFMEPIM 80 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTC-SCC----------C-CCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhh-hhhHHHH----hhh-cccCCCCHHHHHHHHHHHH
Confidence 445679999999999999999999999 79999999998877411 1111111 111 122 2333344444444
Q ss_pred cCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 105 KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 105 ~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
.. ..++|++...... +.+ ..++.+|||++|.+++.+|+.+|..
T Consensus 81 ~~---~g~~vi~~~~~~~-----~~~------~~~~~vi~l~~~~e~~~~Rl~~R~~ 123 (184)
T 1y63_A 81 VS---RGNHVVDYHSSEL-----FPE------RWFHMVVVLHTSTEVLFERLTKRQY 123 (184)
T ss_dssp TS---SSEEEEECSCCTT-----SCG------GGCSEEEEEECCHHHHHHHHHHTTC
T ss_pred hc---cCCEEEeCchHhh-----hhh------ccCCEEEEEECCHHHHHHHHHhCCC
Confidence 22 3467888653211 111 1267899999999999999999953
No 35
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.46 E-value=1.2e-13 Score=108.94 Aligned_cols=124 Identities=19% Similarity=0.251 Sum_probs=78.6
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhC--CceeehHHHHHHHHHc----CChHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVAA----KTPLGIKAKEAMDKGELVSDDLVVGIIDE 102 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~--~~~i~~d~l~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (195)
...|++|+|+|+|||||||+++.|++.++ +.+++.|. ++..... ....|....++.... ....+...+..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~-~r~~~~~~~~i~~~~g~~~~~~~~~~---~~~~~~~~~~~ 104 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDS-FRSQHPHYLELQQEYGKDSVEYTKDF---AGKMVESLVTK 104 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGG-GGTTSTTHHHHHTTCSSTTHHHHHHH---HHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHH-HHHhchhHHHHHHHcCchHHHHhhHH---HHHHHHHHHHH
Confidence 45577999999999999999999999986 56667754 3332110 000010001111100 01112233333
Q ss_pred HHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 103 AMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 103 ~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
.+.. +..+|+|+++....+...+...+...+..+ .++++++|.+++.+|+.+|.
T Consensus 105 ~~~~---g~~vVid~~~~~~~~~~~~~~~l~~~g~~v-~lv~l~~~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 105 LSSL---GYNLLIEGTLRTVDVPKKTAQLLKNKGYEV-QLALIATKPELSYLSTLIRY 158 (253)
T ss_dssp HHHT---TCCEEEECCTTSSHHHHHHHHHHHHTTCEE-EEEEECCCHHHHHHHHHHHH
T ss_pred HHhc---CCCEEEeCCCCCHHHHHHHHHHHHHCCCcE-EEEEEeCCHHHHHHHHHHHH
Confidence 3332 347999999988888777777777666555 57788999999999998884
No 36
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.46 E-value=4.7e-13 Score=112.81 Aligned_cols=105 Identities=17% Similarity=0.153 Sum_probs=82.4
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS 108 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 108 (195)
...+.+|+|+|+|||||||+++.|++.+++.+++.|++ + ....+...+...+..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~-----------------------~~~~~~~~~~~~l~~-- 308 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL-G-----------------------SWQRCVSSCQAALRQ-- 308 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS-C-----------------------SHHHHHHHHHHHHHT--
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH-H-----------------------HHHHHHHHHHHHHhc--
Confidence 45577999999999999999999999999999999765 0 011122233344433
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 109 CQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 109 ~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
+..+|+|+.+....++..+.+.+...+..+ .+|||+++.+++.+|+.+|..
T Consensus 309 -g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~-~~v~l~~~~e~l~~R~~~R~~ 359 (416)
T 3zvl_A 309 -GKRVVIDNTNPDVPSRARYIQCAKDAGVPC-RCFNFCATIEQARHNNRFREM 359 (416)
T ss_dssp -TCCEEEESCCCSHHHHHHHHHHHHHHTCCE-EEEEECCCHHHHHHHHHHHHH
T ss_pred -CCcEEEeCCCCCHHHHHHHHHHHHHcCCeE-EEEEEeCCHHHHHHHHHhhcc
Confidence 456999999999888888888777666655 799999999999999999965
No 37
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.45 E-value=1.2e-12 Score=101.78 Aligned_cols=125 Identities=18% Similarity=0.172 Sum_probs=80.1
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhC--CceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHH-HHHHHH-
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVG-IIDEAM- 104 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~--~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l- 104 (195)
..++++|+|.|+|||||||+++.|++.++ ..++... ...++..++.+++++..+....+....- ....+.
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~------~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~ 96 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRRE 96 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEC------TTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeec------CCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999999986 3444331 1224556777777776665444333211 111111
Q ss_pred --cC-----CCCCCcEEEe----------CCCCCH--HHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 105 --KK-----PSCQKGFILD----------GFPRTE--VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 105 --~~-----~~~~~~~iid----------~~~~~~--~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
.. +..+..+|+| +++++. .....+... ......||++|||++|++++.+|+.+|.
T Consensus 97 ~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~-~~~~~~pd~vi~L~~~~e~~~~R~~~R~ 170 (229)
T 4eaq_A 97 HLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEF-AINGLYPDLTIYLNVSAEVGRERIIKNS 170 (229)
T ss_dssp HCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHH-HHTTCCCSEEEEEECCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHH-HhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 11 1134578999 776544 333344443 3345689999999999999999999985
No 38
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.44 E-value=2.9e-13 Score=101.48 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=70.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhC-----CceeehHHHHHHHHH-cCChHHHHHHHHHHcCCCCCH--HHHHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVA-AKTPLGIKAKEAMDKGELVSD--DLVVGIIDEAM 104 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~-----~~~i~~d~l~r~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l 104 (195)
++|+|+|+|||||||+++.|+++++ +.+++.++++++.+. .....+. . ......+. ..+...+..++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~i 76 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR---D--EMRKLSVEKQKKLQIDAAKGI 76 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH---H--HHTTSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch---h--hhhcCCHHHHHHHHHHHHHHH
Confidence 4799999999999999999999997 889998888876652 1111000 0 00112222 11222221122
Q ss_pred cCC---CCCCcEEEeCCCCCHHH--------HHHHHHHHhhcCCCcCEEEEEEcCHHHHHHH-Hhc--CC
Q 029307 105 KKP---SCQKGFILDGFPRTEVQ--------AQKLDEMLEKQGKKVDKVLNFAIDDAVLEER-ITG--RW 160 (195)
Q Consensus 105 ~~~---~~~~~~iid~~~~~~~~--------~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~R-l~~--R~ 160 (195)
... ..+..+|+|+++....+ ...+.. + .++.+|||++|++++.+| +.+ |.
T Consensus 77 ~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~vi~l~~~~~~~~~rr~~~~~R~ 140 (194)
T 1nks_A 77 AEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE-I-----NPSVIFLLEADPKIILSRQKRDTTRN 140 (194)
T ss_dssp HHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHH-H-----CCSEEEEEECCHHHHHHHHHHCTTTC
T ss_pred HHHhhccCCCEEEECCchhhccccccccCCCHHHHHh-c-----CCCEEEEEeCCHHHHHHHHHhhcccC
Confidence 111 23567999986321111 122222 1 478999999999998866 777 64
No 39
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.44 E-value=3.5e-13 Score=106.65 Aligned_cols=114 Identities=20% Similarity=0.146 Sum_probs=75.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH---hCCcee--ehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDE---YCLCHL--ATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 105 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~---~~~~~i--~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 105 (195)
++++|+|+|+|||||||+++.|++. .|+.++ +.|.+ ++.+..-...+... + .......+...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~-~~~l~~~~~~~e~~---~-------~~~~~~~i~~~l~ 71 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI-RESFPVWKEKYEEF---I-------KKSTYRLIDSALK 71 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH-HTTSSSCCGGGHHH---H-------HHHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH-HHHHhhhhHHHHHH---H-------HHHHHHHHHHHhh
Confidence 4679999999999999999999998 688777 77544 33221100000000 0 0011233333333
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 106 KPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 106 ~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
. ..+|+|+.+........+....... ..++.+|||++|++++.+|+.+|.
T Consensus 72 ~----~~vIiD~~~~~~~~~~~l~~~a~~~-~~~~~vi~l~~~~e~~~~R~~~R~ 121 (260)
T 3a4m_A 72 N----YWVIVDDTNYYNSMRRDLINIAKKY-NKNYAIIYLKASLDVLIRRNIERG 121 (260)
T ss_dssp T----SEEEECSCCCSHHHHHHHHHHHHHT-TCEEEEEEEECCHHHHHHHHHHTT
T ss_pred C----CEEEEeCCcccHHHHHHHHHHHHHc-CCCEEEEEEeCCHHHHHHHHHhCC
Confidence 2 5689998877777766666554433 346789999999999999999985
No 40
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.44 E-value=6.5e-13 Score=97.86 Aligned_cols=100 Identities=21% Similarity=0.215 Sum_probs=64.3
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
++|+|+|+|||||||+++.|++.+++.+++.|.+..... ... ..+ .. ...+.. +..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~----~~~----~~~------------~~-~~~l~~---~~~ 57 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS----GNE----KLF------------EH-FNKLAD---EDN 57 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT----CHH----HHH------------HH-HHHHTT---CCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh----HHH----HHH------------HH-HHHHHh---CCC
Confidence 479999999999999999999999999999976543321 000 000 11 111211 334
Q ss_pred EEEeCCC---------------CCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 113 FILDGFP---------------RTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 113 ~iid~~~---------------~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
+|.|.+. ....+...+...+ ..++.+|||++|++++.+|+.+|.
T Consensus 58 vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~i~l~~~~e~~~~R~~~r~ 116 (173)
T 3kb2_A 58 VIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKI----KAKAKVVYLHADPSVIKKRLRVRG 116 (173)
T ss_dssp EEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHH----TTTEEEEEEECCHHHHHHHHHHHS
T ss_pred eEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccC----CCCCEEEEEeCCHHHHHHHHHhcC
Confidence 5555221 1222333333222 457899999999999999999984
No 41
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.44 E-value=1.1e-14 Score=111.16 Aligned_cols=125 Identities=17% Similarity=0.153 Sum_probs=76.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHH----------
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGI---------- 99 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 99 (195)
.++++|+|+|+|||||||+++.|+++++..+++. +++++. ..+...+..+++.+..+..++......+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMN 85 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999988766665 222221 1134455556666554444554332211
Q ss_pred -HHHHHcCCCCCCcEEEeCCCCCHH--HHHH--H-HHHH---hhcCCCcCEEEEEEcCHHHHHHHHhcC
Q 029307 100 -IDEAMKKPSCQKGFILDGFPRTEV--QAQK--L-DEML---EKQGKKVDKVLNFAIDDAVLEERITGR 159 (195)
Q Consensus 100 -l~~~l~~~~~~~~~iid~~~~~~~--~~~~--l-~~~l---~~~~~~~d~vi~l~~~~e~~~~Rl~~R 159 (195)
+...+. .+..+|+|+++.+.. +... + ..++ ......++.+|||++|++++.+|+..|
T Consensus 86 ~i~~~l~---~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r 151 (212)
T 2wwf_A 86 EIKSLLL---KGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYG 151 (212)
T ss_dssp HHHHHHH---HTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTT
T ss_pred HHHHHHh---CCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccC
Confidence 122222 245689998864311 1000 0 1111 111246889999999999999998765
No 42
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.42 E-value=5.3e-12 Score=93.59 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=69.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHH-------HHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD-------LVVGIIDE 102 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~ 102 (195)
.++.+|+|+|++||||||+++.|+..+|..+++.|++.... .+.. ...+..+.+. .+...+..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~---------~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~ 75 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR---------NIEK-MASGEPLNDDDRKPWLQALNDAAFA 75 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH---------HHHH-HHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchH---------HHHH-hhcCcCCCccccccHHHHHHHHHHH
Confidence 34579999999999999999999999999999997763210 0000 0011111110 11122222
Q ss_pred HHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcC-EEEEEEcCHHHHHHHHhcCCCC
Q 029307 103 AMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVD-KVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 103 ~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d-~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
.+.. +..+|+|.......+...+ ...+ ++ .+|||++|.+++.+|+.+|..+
T Consensus 76 ~~~~---~~~~vi~~~~~~~~~~~~l----~~~~--~~~~vv~l~~~~e~~~~R~~~R~~~ 127 (175)
T 1knq_A 76 MQRT---NKVSLIVCSALKKHYRDLL----REGN--PNLSFIYLKGDFDVIESRLKARKGH 127 (175)
T ss_dssp HHHH---CSEEEEECCCCSHHHHHHH----HTTC--TTEEEEEEECCHHHHHHHHHTSTTC
T ss_pred HHhc---CCcEEEEeCchHHHHHHHH----HhcC--CCEEEEEEECCHHHHHHHHHhccCC
Confidence 2221 3468888543333333332 2222 34 7999999999999999998643
No 43
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.42 E-value=4.2e-13 Score=100.37 Aligned_cols=110 Identities=20% Similarity=0.235 Sum_probs=65.9
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCCCCC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAMKKPSCQK 111 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~ 111 (195)
++|+|+|+|||||||+++.|++.+|+.+++.|+++++... .... +.+. .+...........+...+.. ..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g--~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~---~~ 73 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG--RSIA----DIFATDGEQEFRRIEEDVVRAALAD---HD 73 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS--SCHH----HHHHHHCHHHHHHHHHHHHHHHHHH---CC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcC--CCHH----HHHHHhChHHHHHHHHHHHHHHHhc---CC
Confidence 5799999999999999999999999999999888776542 1111 1111 11111111112222222221 12
Q ss_pred cEEEeCCC--CCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 112 GFILDGFP--RTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 112 ~~iid~~~--~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
.++.++.. .....+ +.+. .+.+|||++|.+++.+|+.+|.
T Consensus 74 ~vi~~g~~~v~~~~~~----~~l~-----~~~vV~L~~~~e~~~~Rl~~r~ 115 (184)
T 2iyv_A 74 GVLSLGGGAVTSPGVR----AALA-----GHTVVYLEISAAEGVRRTGGNT 115 (184)
T ss_dssp SEEECCTTGGGSHHHH----HHHT-----TSCEEEEECCHHHHHHHTTCCC
T ss_pred eEEecCCcEEcCHHHH----HHHc-----CCeEEEEeCCHHHHHHHHhCCC
Confidence 23333321 222222 2221 4579999999999999999885
No 44
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.42 E-value=5.8e-13 Score=101.33 Aligned_cols=115 Identities=19% Similarity=0.160 Sum_probs=67.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCc--eee----hHHHHHHHHHcCChHHHHHHHHHHcCC-CCCHHH--------
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLC--HLA----TGDMLRAAVAAKTPLGIKAKEAMDKGE-LVSDDL-------- 95 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~--~i~----~d~l~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------- 95 (195)
++++|+|+|+|||||||+++.|+++++.. ++. .++.+++.+..+. .. ......
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~~~~~~~ 70 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAK------------KKDLLTPLTFSLIHATD 70 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHHHHT------------TTSCCCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHhccc------------cccCCCHHHHHHHHHHH
Confidence 35799999999999999999999999763 443 2233443332110 00 011110
Q ss_pred ----HHHHHHHHHcCCCCCCcEEEeCCCCCHHHHH-------HHHHHHhhcCCCcCEEEEEEcCHHHHHHHHh-cCC
Q 029307 96 ----VVGIIDEAMKKPSCQKGFILDGFPRTEVQAQ-------KLDEMLEKQGKKVDKVLNFAIDDAVLEERIT-GRW 160 (195)
Q Consensus 96 ----~~~~l~~~l~~~~~~~~~iid~~~~~~~~~~-------~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~-~R~ 160 (195)
+...+...+. .+..+|+|+++.+...+. .+...+......++++|||++|++++.+|+. +|.
T Consensus 71 r~~~~~~~i~~~l~---~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~ 144 (213)
T 2plr_A 71 FSDRYERYILPMLK---SGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKR 144 (213)
T ss_dssp HHHHHHHTHHHHHH---TTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh---CCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccc
Confidence 0111122222 245789998865432111 1111222233458899999999999999999 775
No 45
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.41 E-value=4.8e-12 Score=93.41 Aligned_cols=109 Identities=13% Similarity=0.046 Sum_probs=66.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 112 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 112 (195)
++|+|+|+|||||||+++.|++.+|+.+++.|+++++.. +......+... +...... +...+...+. ...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~--g~~~~~~~~~~---~~~~~~~-~~~~~~~~l~----~~~ 72 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS--GMTVADVVAAE---GWPGFRR-RESEALQAVA----TPN 72 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH--CSCHHHHHHHH---HHHHHHH-HHHHHHHHHC----CSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHh--CCCHHHHHHHc---CHHHHHH-HHHHHHHHhh----cCC
Confidence 479999999999999999999999999999988876652 22221111100 0000001 1111122232 234
Q ss_pred EEEe-CC--CCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHh--cC
Q 029307 113 FILD-GF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT--GR 159 (195)
Q Consensus 113 ~iid-~~--~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~--~R 159 (195)
+|++ +. +........+. .++.+|||++|++++.+|+. .|
T Consensus 73 ~vi~~g~~~~~~~~~~~~l~--------~~~~~i~l~~~~e~~~~R~~~~~r 116 (173)
T 1e6c_A 73 RVVATGGGMVLLEQNRQFMR--------AHGTVVYLFAPAEELALRLQASLQ 116 (173)
T ss_dssp EEEECCTTGGGSHHHHHHHH--------HHSEEEEEECCHHHHHHHHHHHHC
T ss_pred eEEECCCcEEeCHHHHHHHH--------cCCeEEEEECCHHHHHHHHhhccC
Confidence 5665 42 22333333222 25689999999999999999 77
No 46
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.41 E-value=4.6e-13 Score=102.91 Aligned_cols=118 Identities=17% Similarity=0.156 Sum_probs=71.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHc-----CCCCCHHHH---------
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-----GELVSDDLV--------- 96 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--------- 96 (195)
++++|+|+|++||||||+++.|++ +|+.+++.|+++++....+......+.+.+.. ...+....+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 468999999999999999999998 99999999888776543333333333333211 111222111
Q ss_pred ---------HHHHH----HHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 97 ---------VGIID----EAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 97 ---------~~~l~----~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
...+. ..+... ....+++++ +...+.. +. ..+|.+|||++|++++.+|+.+|.
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~~~-~~~~vi~~~-~~l~~~~--~~-------~~~d~vi~l~~~~e~~~~Rl~~R~ 147 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQQA-TSPYVLWVV-PLLVENS--LY-------KKANRVLVVDVSPETQLKRTMQRD 147 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEEEC-TTTTTTT--GG-------GGCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHhHCHHHHHHHHHHHHhc-CCCEEEEEe-eeeeccC--cc-------ccCCEEEEEECCHHHHHHHHHHcC
Confidence 11111 111111 123345554 4322221 11 247899999999999999999884
No 47
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.40 E-value=2.2e-12 Score=98.22 Aligned_cols=116 Identities=19% Similarity=0.157 Sum_probs=67.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCC-----CC---------------
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL-----VS--------------- 92 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~-----~~--------------- 92 (195)
++|+|+|++||||||+++.|++ +|+.+++.|++.++....+......+.+.+..... +.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 81 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK 81 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence 4799999999999999999988 99999999888776433222222222222211111 10
Q ss_pred ---HHHH----HHHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 93 ---DDLV----VGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 93 ---~~~~----~~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
...+ ...+...+.... +.++|+++. ...+.. +. ..+|.+|||++|++++.+|+.+|.
T Consensus 82 ~~l~~~~~p~v~~~~~~~~~~~~-~~~vv~~~~-~l~e~~--~~-------~~~d~vi~l~~~~e~~~~Rl~~R~ 145 (206)
T 1jjv_A 82 LWLNNLLHPAIRERMKQKLAEQT-APYTLFVVP-LLIENK--LT-------ALCDRILVVDVSPQTQLARSAQRD 145 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC-SSEEEEECT-TTTTTT--CG-------GGCSEEEEEECCHHHHHHHHC---
T ss_pred HHHHhccCHHHHHHHHHHHHhcC-CCEEEEEec-hhhhcC--cH-------hhCCEEEEEECCHHHHHHHHHHcC
Confidence 0011 111122232222 346788863 221111 11 247899999999999999999985
No 48
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.40 E-value=9.4e-13 Score=105.44 Aligned_cols=120 Identities=20% Similarity=0.162 Sum_probs=74.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcC-----CCCCHHH---------
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDDL--------- 95 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--------- 95 (195)
+++++|+|+|++||||||+|+.|+ .+|+.+|+.|++.++....+......+.+.+... ..++...
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~ 151 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNK 151 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCH
Confidence 456799999999999999999999 5899999999988776554433333322222111 1111110
Q ss_pred ---------HH----HHHHHHHcC--CCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 96 ---------VV----GIIDEAMKK--PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 96 ---------~~----~~l~~~l~~--~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
+. ..+...+.. ......+|+|+...... .+ . ..+|.+|||++|++++.+|+.+|.
T Consensus 152 ~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~----~---~~~d~vI~l~a~~ev~~~Rl~~R~ 221 (281)
T 2f6r_A 152 KQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA---GW----Q---SMVHEVWTVVIPETEAVRRIVERD 221 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT---TG----G---GGCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc---ch----H---HhCCEEEEEcCCHHHHHHHHHHcC
Confidence 00 011111111 01124689998642211 01 1 247899999999999999999985
No 49
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.39 E-value=5.8e-12 Score=95.63 Aligned_cols=116 Identities=19% Similarity=0.211 Sum_probs=72.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHH-------HHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDL-------VVGIIDE 102 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~ 102 (195)
.++.+|+|+|++||||||+++.|+..+|..+++.+++...... .....+....+.. +...+..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~----------~~~~~g~~~~~~~~~~~~~~~~~~~~~ 96 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENI----------ATMQRGIPLTDEDRWPWLRSLAEWMDA 96 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHH----------HHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHH----------HHHhcCCCCCCcccccHHHHHHHHHHH
Confidence 4567999999999999999999999999999998775321100 0011121222211 1222222
Q ss_pred HHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCC
Q 029307 103 AMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHP 163 (195)
Q Consensus 103 ~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~ 163 (195)
.+.. +..+|+|...........+.+ ... ...+|||++|.+++.+|+.+|....
T Consensus 97 ~~~~---g~~viid~~~~~~~~~~~l~~----~~~-~~~vv~l~~~~e~l~~Rl~~R~~~~ 149 (200)
T 4eun_A 97 RADA---GVSTIITCSALKRTYRDVLRE----GPP-SVDFLHLDGPAEVIKGRMSKREGHF 149 (200)
T ss_dssp HHHT---TCCEEEEECCCCHHHHHHHTT----SSS-CCEEEEEECCHHHHHHHHTTCSCCS
T ss_pred HHhc---CCCEEEEchhhhHHHHHHHHH----hCC-ceEEEEEeCCHHHHHHHHHhcccCC
Confidence 2222 446788865555444443322 222 3379999999999999999997543
No 50
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.38 E-value=8.3e-13 Score=100.31 Aligned_cols=116 Identities=22% Similarity=0.248 Sum_probs=69.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCC-----CCC-----------HHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE-----LVS-----------DDLV 96 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~-----~~~-----------~~~~ 96 (195)
++|+|+|++||||||+++.|++ +|+.+++.|+++++....+......+.+.+.... .+. ....
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999999 9999999998877654332222222222221110 111 1110
Q ss_pred ---HHHHH--------HHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcC
Q 029307 97 ---VGIID--------EAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (195)
Q Consensus 97 ---~~~l~--------~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R 159 (195)
..+.. ..+........+|+|+....... + ...++.+|||++|++++.+|+.+|
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~~---~-------~~~~~~~i~l~~~~e~~~~Rl~~R 144 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNLSEDTLFILEASLLVEKG---T-------YKNYDKLIVVYAPYEVCKERAIKR 144 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSCSTTTT---C-------GGGSSEEEEECCCHHHHHHHHHHT
T ss_pred HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccccccCC---c-------hhhCCEEEEEECCHHHHHHHHHHc
Confidence 11111 11111111156888875321111 1 124779999999999999999988
No 51
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.38 E-value=2e-13 Score=101.81 Aligned_cols=109 Identities=25% Similarity=0.292 Sum_probs=71.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQ 110 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 110 (195)
++++|+|+|+|||||||+++.|++.+|+.+++.|+++++..... ..+. ...........+...+...+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~---- 79 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYD-GYDE-----EYDCPILDEDRVVDELDNQMRE---- 79 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCEE-EEET-----TTTEEEECHHHHHHHHHHHHHH----
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchhh-hhhh-----hhcCccCChHHHHHHHHHHHhc----
Confidence 35679999999999999999999999999999998877651100 0000 0000112334444444444432
Q ss_pred CcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 111 KGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 111 ~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
.++|++...... +.. ..++.+|||++|.+++.+|+.+|.
T Consensus 80 g~~vv~~~~~~~-----~~~------~~~~~vi~L~~~~e~l~~R~~~r~ 118 (180)
T 3iij_A 80 GGVIVDYHGCDF-----FPE------RWFHIVFVLRTDTNVLYERLETRG 118 (180)
T ss_dssp CCEEEECSCCTT-----SCG------GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred CCEEEEechhhh-----cch------hcCCEEEEEECCHHHHHHHHHHcC
Confidence 357777543221 000 126799999999999999999995
No 52
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.38 E-value=5e-12 Score=96.96 Aligned_cols=115 Identities=14% Similarity=0.063 Sum_probs=77.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcC-----CCCCHHHH------------
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDDLV------------ 96 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------------ 96 (195)
-|+|+|++||||||+++.|++ +|+++|+.|.+.++.+..+......+.+.+... +.++...+
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~~ 89 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDARR 89 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHHH
Confidence 599999999999999999988 999999999988888766655555555444322 23332221
Q ss_pred ----------HHHHHHHHcCCCCCCcEEEeCCCCCHH-HHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 97 ----------VGIIDEAMKKPSCQKGFILDGFPRTEV-QAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 97 ----------~~~l~~~l~~~~~~~~~iid~~~~~~~-~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
...+...+... ....+|+|. |.-.+ .. +.. .+|.+|++++|+++..+|+++|+
T Consensus 90 ~L~~i~HP~I~~~~~~~~~~~-~~~~vv~d~-pLL~E~~~--~~~-------~~D~vi~V~ap~e~r~~Rl~~Rd 153 (210)
T 4i1u_A 90 RLEAITHPLIRAETEREARDA-QGPYVIFVV-PLLVESRN--WKA-------RCDRVLVVDCPVDTQIARVMQRN 153 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-CSSSEEEEC-TTCTTCHH--HHH-------HCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhc-CCCEEEEEE-ecccccCC--ccc-------cCCeEEEEECCHHHHHHHHHhcC
Confidence 12222333332 234567774 44433 21 221 37899999999999999999996
No 53
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.37 E-value=9.8e-13 Score=97.01 Aligned_cols=105 Identities=23% Similarity=0.287 Sum_probs=64.9
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCCCC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKPSCQK 111 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~ 111 (195)
.+|+|+|+|||||||+++.|++++|+++++.|+++++... .. +.+.+.. +...........+..... ..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g--~~----~~~~~~~~g~~~~~~~~~~~l~~~~~----~~ 77 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG--LS----VREIFEELGEDNFRMFEKNLIDELKT----LK 77 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT--SC----HHHHHHHTCHHHHHHHHHHHHHHHHT----CS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhC--CC----HHHHHHHhCHHHHHHHHHHHHHHHHh----cC
Confidence 3799999999999999999999999999999988876542 11 1222211 110001111222333222 12
Q ss_pred cE-EEe-C--CCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcC
Q 029307 112 GF-ILD-G--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (195)
Q Consensus 112 ~~-iid-~--~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R 159 (195)
.+ |+. + ++.. .. + ..++.+|||++|++++.+|+.+|
T Consensus 78 ~~~Vi~~g~g~~~~-~~-------l----~~~~~vi~l~~~~e~~~~Rl~~r 117 (168)
T 1zuh_A 78 TPHVISTGGGIVMH-EN-------L----KGLGTTFYLKMDFETLIKRLNQK 117 (168)
T ss_dssp SCCEEECCGGGGGC-GG-------G----TTSEEEEEEECCHHHHHHHHCC-
T ss_pred CCEEEECCCCEech-hH-------H----hcCCEEEEEECCHHHHHHHHhcc
Confidence 23 444 2 2222 11 1 23678999999999999999988
No 54
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.37 E-value=4.6e-12 Score=97.59 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=72.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHH----cCChHH--HHHHHHHHc-----------------C
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA----AKTPLG--IKAKEAMDK-----------------G 88 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~----~~~~~~--~~~~~~~~~-----------------~ 88 (195)
+++|+|+|++||||||+++.|++.+|+.+++.|++++.... .+.... ......... +
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 46899999999999999999999999999999999886542 232211 112222111 1
Q ss_pred CCCCH-----------------HHHHHHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHH
Q 029307 89 ELVSD-----------------DLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAV 151 (195)
Q Consensus 89 ~~~~~-----------------~~~~~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~ 151 (195)
..+++ ..+...+...........++++|+..... ..-..++.+|||+++.++
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~-----------~~~~~~d~~i~l~~~~e~ 153 (227)
T 1cke_A 85 EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT-----------VVFPDAPVKIFLDASSEE 153 (227)
T ss_dssp EECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCC-----------CCCTTCSEEEEEECCHHH
T ss_pred eeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccc-----------eEecCCCEEEEEeCCHHH
Confidence 10101 11222233333333345689999873221 011357899999999999
Q ss_pred HHHHHh
Q 029307 152 LEERIT 157 (195)
Q Consensus 152 ~~~Rl~ 157 (195)
+.+|+.
T Consensus 154 ~~~R~~ 159 (227)
T 1cke_A 154 RAHRRM 159 (227)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999954
No 55
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.37 E-value=5.2e-13 Score=101.94 Aligned_cols=124 Identities=21% Similarity=0.191 Sum_probs=67.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHH-----------H
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVV-----------G 98 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 98 (195)
+++++|+|+|+|||||||+++.|+++++..+++++. +++. ..+...+..+++.+..+..++..... .
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~-~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 84 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL-LRFP-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVP 84 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE-EESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE-eeCC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999988655444311 1110 00233344455555443334433211 1
Q ss_pred HHHHHHcCCCCCCcEEEeCCCCCHH---------HHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcC
Q 029307 99 IIDEAMKKPSCQKGFILDGFPRTEV---------QAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (195)
Q Consensus 99 ~l~~~l~~~~~~~~~iid~~~~~~~---------~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R 159 (195)
.+...+.. +..+|+|.+..... ....+. .+......++.+|||++|++++.+|+..|
T Consensus 85 ~i~~~l~~---~~~vi~dr~~~s~~~~~~~~~~~~~~~~~-~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~ 150 (215)
T 1nn5_A 85 LIKEKLSQ---GVTLVVDRYAFSGVAFTGAKENFSLDWCK-QPDVGLPKPDLVLFLQLQLADAAKRGAFG 150 (215)
T ss_dssp HHHHHHHT---TCEEEEESCHHHHHHHHHTSTTCCHHHHH-GGGTTSBCCSEEEEEECCHHHHHHC----
T ss_pred HHHHHHHC---CCEEEEeCCcccHHHHHhhcCCCCHHHHH-HHHhCCCCCCEEEEEeCCHHHHHHHhccC
Confidence 12222322 45688885421100 011111 12222245889999999999999999643
No 56
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.37 E-value=1.7e-11 Score=91.57 Aligned_cols=109 Identities=14% Similarity=0.085 Sum_probs=65.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQK 111 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 111 (195)
+++|+|+|+|||||||+++.|++.+|+.+++.|+++.+.... .....+... ... .........+...... ..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g~--~~~~~~~~~-g~~--~~~~~~~~~~~~~~~~---~~ 76 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGA--DIAWIFEME-GEA--GFRRREREMIEALCKL---DN 76 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHTS--CHHHHHHHH-HHH--HHHHHHHHHHHHHHHS---SS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC--ChhhHHHHh-CHH--HHHHHHHHHHHHHHhc---CC
Confidence 468999999999999999999999999999998887664321 111111110 000 0001112222222222 22
Q ss_pred cEEEeCC--CCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHH
Q 029307 112 GFILDGF--PRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 156 (195)
Q Consensus 112 ~~iid~~--~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl 156 (195)
.+|..|. .........+.+ ...+|||++|++++.+|+
T Consensus 77 ~vi~~gg~~~~~~~~~~~l~~--------~~~vi~L~~~~e~l~~Rl 115 (185)
T 3trf_A 77 IILATGGGVVLDEKNRQQISE--------TGVVIYLTASIDTQLKRI 115 (185)
T ss_dssp CEEECCTTGGGSHHHHHHHHH--------HEEEEEEECCHHHHHHHH
T ss_pred cEEecCCceecCHHHHHHHHh--------CCcEEEEECCHHHHHHHH
Confidence 3444442 334444433332 237999999999999999
No 57
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.36 E-value=2.3e-12 Score=97.65 Aligned_cols=115 Identities=17% Similarity=0.129 Sum_probs=70.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh-CCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHH-----------H
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVV-----------G 98 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~-~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 98 (195)
++++|+|+|++||||||+++.|++++ |+.+++.++.. .....++.+++.+..+..++..... .
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~-----~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~ 77 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQ-----RSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFAS 77 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSC-----TTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCC-----CCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999998 57777653211 0233455566666544334332210 1
Q ss_pred HHHHHHcCCCCCCcEEEeCCCCCHHH--------HHHHHHHHhhcCCCcCEEEEEEcCHHHHHH
Q 029307 99 IIDEAMKKPSCQKGFILDGFPRTEVQ--------AQKLDEMLEKQGKKVDKVLNFAIDDAVLEE 154 (195)
Q Consensus 99 ~l~~~l~~~~~~~~~iid~~~~~~~~--------~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~ 154 (195)
.+...+. .+..+|+|.++.+... ...+. .+......+|.+|||++|++++.+
T Consensus 78 ~i~~~l~---~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~-~~~~~~~~~d~vi~l~~~~e~~~~ 137 (204)
T 2v54_A 78 FIQEQLE---QGITLIVDRYAFSGVAYAAAKGASMTLSK-SYESGLPKPDLVIFLESGSKEINR 137 (204)
T ss_dssp HHHHHHH---TTCEEEEESCHHHHHHHHHHTTCCHHHHH-HHHTTSBCCSEEEEECCCHHHHTT
T ss_pred HHHHHHH---CCCEEEEECchhhHHHHHHccCCCHHHHH-HHhcCCCCCCEEEEEeCCHHHHHh
Confidence 1122222 2456888987643211 11122 222223468999999999999887
No 58
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.33 E-value=8.4e-12 Score=96.08 Aligned_cols=120 Identities=21% Similarity=0.265 Sum_probs=77.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhC---CceeehHHHHHHHHHcCChHHHHHHHHHHcCC--CCCHHH-H--------
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE--LVSDDL-V-------- 96 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~---~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~-------- 96 (195)
++++|+|.|++||||||+++.|++.++ +.++... + ..+++.|+.+++++.++. .+.... .
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~----~--p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~ 78 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR----E--PGGTPLAERIRELLLAPSDEPMAADTELLLMFAARA 78 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE----S--SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc----C--CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999884 4444331 1 135667778888777653 233321 1
Q ss_pred ---HHHHHHHHcCCCCCCcEEEeCCC------------CCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 97 ---VGIIDEAMKKPSCQKGFILDGFP------------RTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 97 ---~~~l~~~l~~~~~~~~~iid~~~------------~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
.+.+...+. .+..+|.|-|. ....+...+... ......||++|||++|++++.+|+.+|.
T Consensus 79 ~~~~~~i~p~l~---~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~-~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~ 153 (213)
T 4edh_A 79 QHLAGVIRPALA---RGAVVLCDRFTDATYAYQGGGRGLPEARIAALESF-VQGDLRPDLTLVFDLPVEIGLARAAARG 153 (213)
T ss_dssp HHHHHTHHHHHH---TTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHH-HHTTCCCSEEEEEECCHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHH---CCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHH-HhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 111222222 25567888542 122333333332 2335789999999999999999999985
No 59
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.33 E-value=6.9e-13 Score=104.38 Aligned_cols=116 Identities=15% Similarity=0.091 Sum_probs=72.0
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCc----------eeehHHHHHHHHHcCChHHHHHHHHHHcCC-------CC
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLC----------HLATGDMLRAAVAAKTPLGIKAKEAMDKGE-------LV 91 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~----------~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~-------~~ 91 (195)
..++++|+|+|++||||||+|+.|++.+|+. +++.|++++... ...+. ....+. .+
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~------~~~~~-~~~~g~~~f~~~~~~ 91 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLT------SEQKA-KALKGQFNFDHPDAF 91 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCC------HHHHH-HHHTTCSCTTSGGGB
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccC------hhhhh-hhccCCCCCCCcchh
Confidence 3456799999999999999999999999987 789988765210 01111 111111 12
Q ss_pred CHHHHHHHHHHHHcC---------------------CCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHH
Q 029307 92 SDDLVVGIIDEAMKK---------------------PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDA 150 (195)
Q Consensus 92 ~~~~~~~~l~~~l~~---------------------~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e 150 (195)
....+.+.+...... ......+|+||....... .+.+ .+|.+|||++|.+
T Consensus 92 d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~--~~~~-------~~d~vi~l~~~~e 162 (252)
T 1uj2_A 92 DNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ--EVRD-------LFQMKLFVDTDAD 162 (252)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSH--HHHH-------HCSEEEEEECCHH
T ss_pred hHHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCH--HHHH-------hcCeeEEEeCCHH
Confidence 222233444433211 012357899986542111 1222 2679999999999
Q ss_pred HHHHHHhcCC
Q 029307 151 VLEERITGRW 160 (195)
Q Consensus 151 ~~~~Rl~~R~ 160 (195)
++.+|+.+|.
T Consensus 163 ~~~~R~~~R~ 172 (252)
T 1uj2_A 163 TRLSRRVLRD 172 (252)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999884
No 60
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.33 E-value=1e-11 Score=94.15 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=37.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAA 73 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~ 73 (195)
++|+|+|++||||||+++.|++.+|+++++.|+++++....
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~ 53 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE 53 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH
Confidence 58999999999999999999999999999999998877653
No 61
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.32 E-value=8e-12 Score=94.46 Aligned_cols=118 Identities=14% Similarity=0.046 Sum_probs=70.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHc---CCCCCHHHHH--------
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK---GELVSDDLVV-------- 97 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-------- 97 (195)
..++++|+|+|++||||||+++.|++. |+.+++.|+++++.. .+.. ..+...++. ...+....+.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~ 80 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGRLDRRALARLVFSDPE 80 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTEECHHHHHHHHTTSHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCCcCHHHHHHHHhCCHH
Confidence 345789999999999999999999998 999999998877655 2211 111111110 1122222111
Q ss_pred ----------HHH-HHHHcC--CCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 98 ----------GII-DEAMKK--PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 98 ----------~~l-~~~l~~--~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
..+ ...+.. ...+..+|+|+. ..... .+ ...++.+|||++|++++.+|+.+|.
T Consensus 81 ~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~-~l~~~--~~-------~~~~d~~i~l~~~~e~~~~R~~~R~ 146 (203)
T 1uf9_A 81 RLKALEAVVHPEVRRLLMEELSRLEAPLVFLEIP-LLFEK--GW-------EGRLHGTLLVAAPLEERVRRVMARS 146 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECT-TTTTT--TC-------GGGSSEEEEECCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEec-ceecc--Cc-------hhhCCEEEEEECCHHHHHHHHHHcC
Confidence 111 011111 111346777753 21111 01 1246899999999999999999884
No 62
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.32 E-value=2.4e-11 Score=90.05 Aligned_cols=120 Identities=17% Similarity=0.149 Sum_probs=67.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCcee--ehHHHHHHHHHcCC---hHHHHHHHHHHcCCC-CCHH--H----HHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLRAAVAAKT---PLGIKAKEAMDKGEL-VSDD--L----VVGI 99 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i--~~d~l~r~~~~~~~---~~~~~~~~~~~~~~~-~~~~--~----~~~~ 99 (195)
+++|+|+|+|||||||+++.|++.++..++ +.|++... ..... ..+..+. ..+.. .... . +...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 78 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA-MPLKMQSAEGGIEFD---ADGGVSIGPEFRALEGAWAEG 78 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH-SCGGGGTSTTSEEEC---TTSCEEECHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhh-cchhhccchhhcccc---CCCccccchhHHHHHHHHHHH
Confidence 468999999999999999999999976554 57655432 21100 0000000 00000 0010 1 1112
Q ss_pred HHHHHcCCCCCCcEEEeCCCC-CHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 100 IDEAMKKPSCQKGFILDGFPR-TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 100 l~~~l~~~~~~~~~iid~~~~-~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
+...+.. +..+|+++... .......+.+.+.. ....+|||++|.+++.+|+.+|..
T Consensus 79 ~~~~~~~---g~~vi~~~~~~~~~~~~~~~~~~~~~---~~~~~v~l~~~~e~l~~R~~~r~~ 135 (178)
T 1qhx_A 79 VVAMARA---GARIIIDDVFLGGAAAQERWRSFVGD---LDVLWVGVRCDGAVAEGRETARGD 135 (178)
T ss_dssp HHHHHHT---TCEEEEEECCTTTHHHHHHHHHHHTT---CCEEEEEEECCHHHHHHHHHHTSS
T ss_pred HHHHHhc---CCeEEEEeccccChHHHHHHHHHhcC---CcEEEEEEECCHHHHHHHHHhhCC
Confidence 2222222 44688887543 33334444444422 222688999999999999999864
No 63
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.32 E-value=6.9e-11 Score=90.42 Aligned_cols=119 Identities=20% Similarity=0.181 Sum_probs=73.9
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh--CCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHH------------HH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY--CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV------------VG 98 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~--~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 98 (195)
+.|+|.|+.||||||+++.|++.+ |..++-..+ ..++..|..+++.+.++...+.... ..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~e------P~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~ 76 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTRE------PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVL 76 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEES------STTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeC------CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999988 444443211 1245566777777666555544322 11
Q ss_pred HHHHHHcCCCCCCcEEEeCCCC------------CHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 99 IIDEAMKKPSCQKGFILDGFPR------------TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 99 ~l~~~l~~~~~~~~~iid~~~~------------~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
.+...+. .+..+|.|.|.. ..+....+.... ..+..||++|||++|++++.+|+.+|..
T Consensus 77 ~i~p~l~---~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~-~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~ 147 (205)
T 4hlc_A 77 KVIPALK---EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFA-INGLYPDLTIYLNVSAEVGRERIIKNSR 147 (205)
T ss_dssp THHHHHH---TTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHH-HTTCCCSEEEEEECCHHHHHHHHHC---
T ss_pred HHHHHHH---cCCEEEecCcccchHHHHhccccchHHHHHHHHHHH-hcCCCCCEEeeeCCCHHHHHHHHHhcCC
Confidence 1222232 255677775531 222333333322 2346899999999999999999998864
No 64
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.30 E-value=7.7e-12 Score=97.71 Aligned_cols=124 Identities=21% Similarity=0.175 Sum_probs=73.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcC---CCCCHHHH-----------
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG---ELVSDDLV----------- 96 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----------- 96 (195)
++++|+|.|++||||||+++.|++.++...++...+.++ ..+++.|+.+++.+..+ ..+.....
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~ 103 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQL 103 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHH
Confidence 467999999999999999999999885433331111222 13567788888877532 22332211
Q ss_pred -HHHHHHHHcCCCCCCcEEEeCCC------------CCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 97 -VGIIDEAMKKPSCQKGFILDGFP------------RTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 97 -~~~l~~~l~~~~~~~~~iid~~~------------~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
.+.+...+. .+..+|.|-|. ........+... ......||++|||++|++++.+|+.+|.
T Consensus 104 ~~~~I~paL~---~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~-~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~ 176 (236)
T 3lv8_A 104 VENVIKPALA---RGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQT-ALGDFKPDLTLYLDIDPKLGLERARGRG 176 (236)
T ss_dssp HHHTHHHHHH---TTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHH-HHTTCCCSEEEEEECCHHHHHHC-----
T ss_pred HHHHHHHHHH---cCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHH-HhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 112222332 25578888542 122333333332 2235789999999999999999999985
No 65
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.30 E-value=4.7e-11 Score=90.51 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=35.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV 71 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~ 71 (195)
+|+|+|++||||||+++.|++.+|+.+++.|++.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~ 41 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAA 41 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhh
Confidence 89999999999999999999999999999988877653
No 66
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.29 E-value=1.9e-12 Score=96.13 Aligned_cols=108 Identities=18% Similarity=0.184 Sum_probs=65.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCcE
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGF 113 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 113 (195)
+|+|+|+|||||||+++.|++.+|+.+++.|+++++... ......+. ..+...........+. .+.. ...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g--~~~~~~~~---~~g~~~~~~~~~~~~~-~l~~---~~~~ 76 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN--QKVSEIFE---QKRENFFREQEQKMAD-FFSS---CEKA 76 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT--SCHHHHHH---HHCHHHHHHHHHHHHH-HHTT---CCSE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC--CCHHHHHH---HcCHHHHHHHHHHHHH-HHHc---cCCE
Confidence 699999999999999999999999999999888765432 11111111 0110000111122222 2221 2345
Q ss_pred EEe-CCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 114 ILD-GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 114 iid-~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
|++ +...... .. +. ..+.+|||++|.+++.+|+.+|.
T Consensus 77 vi~~g~~~~~~-~~-----l~----~~~~~i~l~~~~e~~~~R~~~r~ 114 (175)
T 1via_A 77 CIATGGGFVNV-SN-----LE----KAGFCIYLKADFEYLKKRLDKDE 114 (175)
T ss_dssp EEECCTTGGGS-TT-----GG----GGCEEEEEECCHHHHTTCCCGGG
T ss_pred EEECCCCEehh-hH-----Hh----cCCEEEEEeCCHHHHHHHHhccc
Confidence 665 4332221 11 21 24589999999999999998873
No 67
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.28 E-value=1.4e-11 Score=95.70 Aligned_cols=121 Identities=18% Similarity=0.186 Sum_probs=75.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCC-------ceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHH-----
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCL-------CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVV----- 97 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~-------~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 97 (195)
.++++|+|.|++||||||+++.|++.++. .++.. ++ ..+++.|+.+++++.++...+.....
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~llf~a~ 96 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT----RE--PGGTRLGETLREILLNQPMDLETEALLMFAG 96 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE----ES--SSSSHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee----cC--CCCChHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 46789999999999999999999998843 33322 21 13566778888887766433332211
Q ss_pred ------HHHHHHHcCCCCCCcEEEeCCCC------------CHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcC
Q 029307 98 ------GIIDEAMKKPSCQKGFILDGFPR------------TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (195)
Q Consensus 98 ------~~l~~~l~~~~~~~~~iid~~~~------------~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R 159 (195)
+.+...+. .+..+|.|.|.. ..++...+... ......||++|||++|++++.+|+.+|
T Consensus 97 R~~~~~~~i~p~l~---~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~-~~~~~~PDl~I~Ldv~~e~~~~Ri~~R 172 (227)
T 3v9p_A 97 RREHLALVIEPALA---RGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERW-VQGGFQPDLTVLFDVPPQIASARRGAV 172 (227)
T ss_dssp HHHHHHHTHHHHHH---TTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHH-HHTTCCCSEEEEEECCSSCGGGTTTCC
T ss_pred HHHHHHHHHHHHHH---cCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHH-HhcCCCCCEEEEEeCCHHHHHHHHHhc
Confidence 11222222 255688886532 22333333332 223578999999999999999999998
Q ss_pred C
Q 029307 160 W 160 (195)
Q Consensus 160 ~ 160 (195)
.
T Consensus 173 ~ 173 (227)
T 3v9p_A 173 R 173 (227)
T ss_dssp C
T ss_pred c
Confidence 5
No 68
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.27 E-value=3.2e-11 Score=89.03 Aligned_cols=112 Identities=15% Similarity=0.237 Sum_probs=63.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQK 111 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 111 (195)
+++|+|+|++||||||+++.|+..++..+++.|+++++... ...+..+.. .....+ ...-..++. .+.. ..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~--~~i~~i~~~-~g~~~~--~~~~~~~l~-~l~~---~~ 74 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADVGWVFDL-EGEEGF--RDREEKVIN-ELTE---KQ 74 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT--SCHHHHHHH-HHHHHH--HHHHHHHHH-HHHT---SS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhC--cCHHHHHHH-HhHHHH--HHHHHHHHH-HHHh---CC
Confidence 46899999999999999999999999999999887765432 222211110 000000 000011222 2222 23
Q ss_pred cEEEe---CCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 112 GFILD---GFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 112 ~~iid---~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
.+++. +..........+. .+++++|++++++++.+|+.+|.
T Consensus 75 ~~v~~~~~~~~~~~~~~~~l~--------~~~~~i~l~~~~~~l~~R~~~r~ 118 (173)
T 1kag_A 75 GIVLATGGGSVKSRETRNRLS--------ARGVVVYLETTIEKQLARTQRDK 118 (173)
T ss_dssp SEEEECCTTGGGSHHHHHHHH--------HHSEEEECCCCHHHHHSCC----
T ss_pred CeEEECCCeEEecHHHHHHHH--------hCCEEEEEeCCHHHHHHHHhCCC
Confidence 45554 2222222222222 24689999999999999999874
No 69
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.26 E-value=3.1e-11 Score=91.16 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=27.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceee
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~ 62 (195)
|+|+|+|++||||||+++.|+++++..++.
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 479999999999999999999999986664
No 70
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.25 E-value=9.1e-11 Score=87.80 Aligned_cols=110 Identities=16% Similarity=0.082 Sum_probs=67.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhC-----CceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHH----HHHH-
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDL----VVGI- 99 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~-----~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~- 99 (195)
.++++|+|+|++||||||+++.|++.++ +.+++.|. ++..+.... .+.... +..+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~-~~~~~~~~~--------------~~~~~~r~~~~~~~~ 75 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW-ARTTVSEGA--------------GFTREERLRHLKRIA 75 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH-HHTTTTTTC--------------CCCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH-HHHHHhhcc--------------CCChhhHHHHHHHHH
Confidence 4578999999999999999999999874 34566644 343222110 111111 1110
Q ss_pred -HHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHh
Q 029307 100 -IDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 157 (195)
Q Consensus 100 -l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~ 157 (195)
+...+. ..+..+++|++......+..+.+.+...+ .++.+|||++|++++.+|+.
T Consensus 76 ~~~~~~~--~~g~~vi~d~~~~~~~~r~~~~~~~~~~~-~~~~~v~L~~~~e~~~~R~~ 131 (186)
T 2yvu_A 76 WIARLLA--RNGVIVICSFVSPYKQARNMVRRIVEEEG-IPFLEIYVKASLEEVIRRDP 131 (186)
T ss_dssp HHHHHHH--TTTCEEEEECCCCCHHHHHHHHHHHHHTT-CCEEEEEEECCHHHHHHHCH
T ss_pred HHHHHHH--hCCCEEEEeCccccHHHHHHHHHHhhccC-CCeEEEEEeCCHHHHHHhhh
Confidence 111111 22345667876555555555555554433 56789999999999999974
No 71
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.24 E-value=3.4e-11 Score=92.67 Aligned_cols=122 Identities=18% Similarity=0.170 Sum_probs=76.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCcee-ehHHHHHHHHHcCChHHHHHHHHHHcC-----CCCCHHH---H------
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHL-ATGDMLRAAVAAKTPLGIKAKEAMDKG-----ELVSDDL---V------ 96 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i-~~d~l~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---~------ 96 (195)
+++|+|.|++||||||+++.|++.+....+ +. .+.++ ..+++.|+.+++.+... ..+.+.. +
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~ 79 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFTRE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARV 79 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEEES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eeeeC--CCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHH
Confidence 579999999999999999999998832222 11 11111 13567788888887632 2333321 1
Q ss_pred ---HHHHHHHHcCCCCCCcEEEeCCCC------------CHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 97 ---VGIIDEAMKKPSCQKGFILDGFPR------------TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 97 ---~~~l~~~l~~~~~~~~~iid~~~~------------~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
.+.+...+. .+..+|.|-|.. ...+...+... ......||++|||++|++++.+|+.+|.
T Consensus 80 ~~~~~~i~paL~---~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~-~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~ 154 (213)
T 4tmk_A 80 QLVETVIKPALA---NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDA-VLGDFRPDLTLYLDVTPEVGLKRARARG 154 (213)
T ss_dssp HHHHHTHHHHHH---TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHH-HHTTCCCSEEEEEECCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH---CCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHH-hccCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 112223333 356788885421 22333333332 2345789999999999999999999985
No 72
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.23 E-value=9e-12 Score=107.70 Aligned_cols=126 Identities=15% Similarity=0.155 Sum_probs=76.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCC-----ceeehHHHHHHHHHcCChHHHHHHHHHHcCCC----CCHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCL-----CHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL----VSDDLVVGII 100 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~-----~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l 100 (195)
..+.+|+|+|.|||||||+++.|++.+++ .+|+.|++.++........ +++..... .........+
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~-----~~f~~~~~~~~~~re~~~~~~l 107 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSY-----NFFRPDNEEAMKVRKQCALAAL 107 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCG-----GGGCTTCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccc-----cccCcccHHHHHHHHHHHHHHH
Confidence 45679999999999999999999998853 3478877554433221000 00000000 0001111112
Q ss_pred H---HHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcC-HHHHHHHHhcCCCC
Q 029307 101 D---EAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAID-DAVLEERITGRWIH 162 (195)
Q Consensus 101 ~---~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~~~ 162 (195)
. ..+.. ..+..+|+|+.+.....+..+.+.+...+..+ ++|++.++ ++++.+|+..|...
T Consensus 108 ~~~~~~L~~-~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v-~~l~~~~~d~e~i~~ri~~r~~~ 171 (520)
T 2axn_A 108 RDVKSYLAK-EGGQIAVFDATNTTRERRHMILHFAKENDFKA-FFIESVCDDPTVVASNIMEVKIS 171 (520)
T ss_dssp HHHHHHHHH-SCCCEEEEESCCCSHHHHHHHHHHHHHHTCEE-EEEEEECCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHh-cCCceEEecCCCCCHHHHHHHHHHHHHcCCeE-EEEEEeCChHHHHHHHHHhhhhc
Confidence 1 12211 23567999999999988888877776555433 56677777 78888888776644
No 73
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.21 E-value=8.7e-11 Score=91.36 Aligned_cols=42 Identities=36% Similarity=0.538 Sum_probs=37.8
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHH
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~ 70 (195)
..++.+|+|+|++||||||+++.|++.+|+.+++.|++++..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~ 54 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA 54 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcc
Confidence 456779999999999999999999999999999999988764
No 74
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.20 E-value=1.4e-10 Score=86.27 Aligned_cols=113 Identities=14% Similarity=0.086 Sum_probs=63.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh---CCceeehH-HHHHHHHHcCChHHHHHHHHHHcCCCCC---HHHHHHHH--
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY---CLCHLATG-DMLRAAVAAKTPLGIKAKEAMDKGELVS---DDLVVGII-- 100 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~---~~~~i~~d-~l~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l-- 100 (195)
.++++|+|+|++||||||+++.|++.+ |++++.++ +.++..+.... .+.. ...+....
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 69 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNL-------------GFSPEDREENVRRIAEV 69 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTC-------------CSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhcc-------------ccccccHHHHHHHHHHH
Confidence 457899999999999999999999987 87776443 33333211100 0110 01111111
Q ss_pred HHHHcCCCCCCcEEEeCCCCC-HHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcC
Q 029307 101 DEAMKKPSCQKGFILDGFPRT-EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (195)
Q Consensus 101 ~~~l~~~~~~~~~iid~~~~~-~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R 159 (195)
...+.. .+ .+++.++... ......+.+.+... ..++.+|||++|++++.+|+.+|
T Consensus 70 ~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~~~e~~~~R~~~~ 125 (179)
T 2pez_A 70 AKLFAD--AG-LVCITSFISPYTQDRNNARQIHEGA-SLPFFEVFVDAPLHVCEQRDVKG 125 (179)
T ss_dssp HHHHHH--TT-CEEEEECCCCCHHHHHHHHHHHHHT-TCCEEEEEEECCHHHHHHHCTTS
T ss_pred HHHHHH--CC-CEEEEecCCcchHHHHHHHHHhhcc-CCCeEEEEEeCCHHHHHHHHhhh
Confidence 111211 12 3444444333 22233333333333 25778999999999999998654
No 75
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.20 E-value=1.2e-10 Score=91.56 Aligned_cols=42 Identities=24% Similarity=0.397 Sum_probs=37.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV 71 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~ 71 (195)
.++.+|+|+|++||||||+++.|++++|+.+++.+.+++...
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~ 66 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLA 66 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhH
Confidence 445799999999999999999999999999999999886643
No 76
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.20 E-value=3.1e-11 Score=93.43 Aligned_cols=121 Identities=19% Similarity=0.133 Sum_probs=64.2
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCC-ceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHH-----------
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCL-CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV----------- 96 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~-~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 96 (195)
..++++|+|.|++||||||+++.|++.++. ..+++-.+.+ + ..+++.|+.+++++...........
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tr-e-P~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~ 95 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTR-E-PGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREH 95 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEE-S-SCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeee-C-CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 556889999999999999999999998754 2221100000 1 1244556666666654222332221
Q ss_pred -HHHHHHHHcCCCCCCcEEEeCCC------------CCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHH
Q 029307 97 -VGIIDEAMKKPSCQKGFILDGFP------------RTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 156 (195)
Q Consensus 97 -~~~l~~~l~~~~~~~~~iid~~~------------~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl 156 (195)
.+.+...+. .+..+|.|-|. ...+....+.+.... ..||++|||++|++++.+|+
T Consensus 96 ~~~~I~paL~---~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~--~~PDl~I~Ldv~~e~~~~Ri 163 (223)
T 3ld9_A 96 FVKIIKPSLM---QKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVID--VYPDITFIIDVDINESLSRS 163 (223)
T ss_dssp HHHTHHHHHH---TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS--SCCSEEEEEECC--------
T ss_pred HHHHHHHHHh---cCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhc--CCCCeEEEEeCCHHHHHHHh
Confidence 111222232 25567878653 123333344333322 68999999999999999999
No 77
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.18 E-value=1.7e-10 Score=90.81 Aligned_cols=112 Identities=17% Similarity=0.203 Sum_probs=67.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCCC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK-GELVSDDLVVGIIDEAMKKPSCQ 110 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~ 110 (195)
+.+|+|+|++||||||+++.|++.+|+.+++.|++++.... +... .+.+.. +.......-...+....... .
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~-g~~i----~~i~~~~ge~~fr~~e~~~l~~l~~~~--~ 120 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK-GTSV----AEIFEHFGESVFREKETEALKKLSLMY--H 120 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST-TSCH----HHHHHHHCHHHHHHHHHHHHHHHHHHC--S
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc-CccH----HHHHHHhCcHHHHHHHHHHHHHHHhhc--C
Confidence 46899999999999999999999999999999888776541 1112 121111 11111111122222222210 1
Q ss_pred CcEEEeC--CCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcC
Q 029307 111 KGFILDG--FPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (195)
Q Consensus 111 ~~~iid~--~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R 159 (195)
..+|.+| .+........+ . .+.+|||++|.+++.+|+.+|
T Consensus 121 ~~Via~GgG~v~~~~~~~~l----~-----~~~vV~L~a~~e~l~~Rl~~~ 162 (250)
T 3nwj_A 121 QVVVSTGGGAVIRPINWKYM----H-----KGISIWLDVPLEALAHRIAAV 162 (250)
T ss_dssp SEEEECCGGGGGSHHHHHHH----T-----TSEEEEEECCHHHHHHHHHC-
T ss_pred CcEEecCCCeecCHHHHHHH----h-----CCcEEEEECCHHHHHHHHhhc
Confidence 2345444 33333333332 1 258999999999999999863
No 78
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.17 E-value=1.8e-10 Score=87.50 Aligned_cols=118 Identities=17% Similarity=0.183 Sum_probs=68.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh---CCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHH----------HHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV----------VGI 99 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~---~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 99 (195)
|.|+|.|+.||||||+++.|++.+ |..++-..+ ..++..+..++..+......+.... ...
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre------P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~ 74 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC------CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999987 555543311 1133444555554444333222111 122
Q ss_pred HHHHHcCCCCCCcEEEeCCCC------------CHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 100 IDEAMKKPSCQKGFILDGFPR------------TEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 100 l~~~l~~~~~~~~~iid~~~~------------~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
+...+. .+..+|.|.|.. .......+.. +...+..||+++||++|+++..+|..+|.
T Consensus 75 I~~~L~---~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~-~~~~~~~PDl~i~Ld~~~e~~~~R~~~~d 143 (197)
T 3hjn_A 75 IKQYLS---EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELND-FATDGLIPDLTFYIDVDVETALKRKGELN 143 (197)
T ss_dssp HHHHHT---TTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHH-HHHTTCCCSEEEEEECCHHHHHHHC---C
T ss_pred HHHHHH---CCCeEEecccchHHHHHHHhccCCCHHHHHHHHh-hhhcCCCCCceeecCcChHHHHHhCcCcC
Confidence 233333 356678886532 1122222222 22345679999999999999999966553
No 79
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.16 E-value=1.8e-10 Score=88.07 Aligned_cols=115 Identities=13% Similarity=0.116 Sum_probs=66.0
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhC------CceeehHHHHHHHHHcCChHH-HHHHHHHHcCCCCCHHHHHHHHH
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC------LCHLATGDMLRAAVAAKTPLG-IKAKEAMDKGELVSDDLVVGIID 101 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~------~~~i~~d~l~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 101 (195)
..++++|+|+|++||||||+++.|++.++ +.+++.+. ++..+....... ......+ ..+...+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~-~r~~l~~~~~~~~~~r~~~~--------~~~~~~~~ 92 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN-IRFGLNKDLGFSEADRNENI--------RRIAEVAK 92 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH-HTTTTTTTCCSSHHHHHHHH--------HHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH-HhhhhccccCCCHHHHHHHH--------HHHHHHHH
Confidence 34578999999999999999999999886 77777643 333221110000 0000000 00111222
Q ss_pred HHHcCCCCCCcEEEeCCCCC-HHHHHHHHHHHhh-----cCCCcCEEEEEEcCHHHHHHHH
Q 029307 102 EAMKKPSCQKGFILDGFPRT-EVQAQKLDEMLEK-----QGKKVDKVLNFAIDDAVLEERI 156 (195)
Q Consensus 102 ~~l~~~~~~~~~iid~~~~~-~~~~~~l~~~l~~-----~~~~~d~vi~l~~~~e~~~~Rl 156 (195)
..+.. +..+|+| +... ......+.+.... ....++.+|||++|++++.+|+
T Consensus 93 ~~l~~---g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 93 LFADS---NSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp HHHHT---TCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred HHHHC---CCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 33332 4567888 4432 2334444444331 1235679999999999999994
No 80
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.14 E-value=4e-10 Score=85.38 Aligned_cols=113 Identities=13% Similarity=0.053 Sum_probs=63.7
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh---CCc--eeehHHHHHHHHHcCChH-HHHHHHHHHcCCCCCHHHHHHHHHH
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY---CLC--HLATGDMLRAAVAAKTPL-GIKAKEAMDKGELVSDDLVVGIIDE 102 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~---~~~--~i~~d~l~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (195)
..++.+|+|.|++||||||+++.|+..+ |.. +++.+++ +..+..+... .......+ ..+......
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~-~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 92 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV-RHGLNRDLSFKAEDRAENI--------RRVGEVAKL 92 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-TTTTTTTCCSSHHHHHHHH--------HHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh-hhHhhcccCcChHHHHHHH--------HHHHHHHHH
Confidence 3567899999999999999999999988 555 7887554 2211111000 00000000 000111111
Q ss_pred HHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHH
Q 029307 103 AMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 156 (195)
Q Consensus 103 ~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl 156 (195)
... .+..++.+........+..+.+.+. ...-.+|||++|.+++.+|+
T Consensus 93 ~~~---~~~~vi~~~~~~~~~~r~~~~~~~~---~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 93 FAD---AGIICIASLISPYRTDRDACRSLLP---EGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp HHH---TTCEEEEECCCCCHHHHHHHHHTSC---TTSEEEEEECCCHHHHHHHC
T ss_pred HHh---CCceEEEecCCchHHHHHHHHHhcC---CCCEEEEEEeCCHHHHHHhc
Confidence 111 2345666655445555555554322 11226799999999999997
No 81
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.14 E-value=6.2e-11 Score=90.85 Aligned_cols=39 Identities=31% Similarity=0.453 Sum_probs=36.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~ 70 (195)
|++|+|+|++||||||+++.|++.+|+.+++.|++++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~ 41 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRAL 41 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHH
Confidence 578999999999999999999999999999999988764
No 82
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.11 E-value=2e-10 Score=87.47 Aligned_cols=38 Identities=13% Similarity=0.175 Sum_probs=34.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAA 70 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~ 70 (195)
.++|.|.|++||||||+++.|++++|+++++ +++++..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~ 43 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEV 43 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHH
Confidence 3689999999999999999999999999999 7887653
No 83
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.11 E-value=1.2e-11 Score=94.10 Aligned_cols=118 Identities=14% Similarity=0.114 Sum_probs=70.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh-CCceeehHHHHHHHHHcCChHHHHHHHHHHcC---CCCCHHHHHHHHHHHHc
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY-CLCHLATGDMLRAAVAAKTPLGIKAKEAMDKG---ELVSDDLVVGIIDEAMK 105 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~-~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~ 105 (195)
+++.+|+|+|++||||||+++.|++.+ ++.+++.|+++...- +...+. ...... ..+....+...+...+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~l~~~i~~~l~ 93 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPES--EIETDK---NGFLQYDVLEALNMEKMMSAISCWME 93 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGG--GSCBCT---TSCBCCSSGGGBCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHh--Hhhccc---cCCChhHHHHHhHHHHHHHHHHHHHh
Confidence 456799999999999999999999988 899999987653210 000000 000000 00122222222222222
Q ss_pred C------------CCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 106 K------------PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 106 ~------------~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
. ......+|+||..... ...+ ...+|.+||++++.+++.+|+..|..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~vi~eg~~~~~--~~~~-------~~~~d~~i~l~~~~~~~~~R~~~R~~ 152 (207)
T 2qt1_A 94 SARHSVVSTDQESAEEIPILIIEGFLLFN--YKPL-------DTIWNRSYFLTIPYEECKRRRSTRVY 152 (207)
T ss_dssp HHTTSSCCC-----CCCCEEEEECTTCTT--CGGG-------TTTCSEEEEEECCHHHHHHHHHHSCC
T ss_pred CCCCCCcCCCeeecCCCCEEEEeehHHcC--cHHH-------HHhcCeeEEEECCHHHHHHHHHHcCC
Confidence 1 1123478999864321 1111 13578999999999999999988853
No 84
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.08 E-value=5.3e-10 Score=86.56 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=35.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA 72 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~ 72 (195)
+.++|.|.|++||||||+++.|++++|+.+++ .+++++...
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~ 53 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASE 53 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHH
Confidence 35799999999999999999999999999999 477766554
No 85
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.08 E-value=1.9e-10 Score=87.43 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
.++++|+|+|+|||||||+++.|++.++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4567999999999999999999999874
No 86
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.08 E-value=1.3e-09 Score=84.79 Aligned_cols=41 Identities=29% Similarity=0.342 Sum_probs=37.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV 71 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~ 71 (195)
.+++|+|.|++||||||+++.|++++|+.+++.+.+++...
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~ 48 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIAT 48 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHH
Confidence 46799999999999999999999999999999999887754
No 87
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.07 E-value=2.7e-10 Score=89.69 Aligned_cols=123 Identities=19% Similarity=0.197 Sum_probs=69.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHH-HHHH--cCChHHHHHHH----HHHc----CCCCCHHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLR-AAVA--AKTPLGIKAKE----AMDK----GELVSDDLVVGIID 101 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r-~~~~--~~~~~~~~~~~----~~~~----~~~~~~~~~~~~l~ 101 (195)
++|+|+|++||||||+++.|++++++.+++.|++.. +... ........... ++.. ...+..........
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 81 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI 81 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence 379999999999999999999999999999977531 1110 00000000000 0000 00133333433444
Q ss_pred HHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhh----cCCCcCEEEEEEcCH-HHHHHHHhcCCC
Q 029307 102 EAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEK----QGKKVDKVLNFAIDD-AVLEERITGRWI 161 (195)
Q Consensus 102 ~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~----~~~~~d~vi~l~~~~-e~~~~Rl~~R~~ 161 (195)
..+.....+..+|+++... . .+...+.. .+..+ .++||++|. +++.+|+.+|..
T Consensus 82 ~~i~~~~~g~~vIl~gg~~--~---~~~~~~~~~~~~~~~~~-~~i~l~~~~~e~l~~Rl~~R~~ 140 (253)
T 2ze6_A 82 FEVDWRKSEEGLILEGGSI--S---LLNCMAKSPFWRSGFQW-HVKRLRLGDSDAFLTRAKQRVA 140 (253)
T ss_dssp HHHHTTTTSSEEEEEECCH--H---HHHHHHHCTTTTSSCEE-EEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCeEEeccHH--H---HHHHHHhcccccccCce-EEEEecchhHHHHHHHHHHHHH
Confidence 4442223355677775432 1 23333332 22223 689999997 999999999853
No 88
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.05 E-value=1.4e-09 Score=95.49 Aligned_cols=114 Identities=14% Similarity=0.072 Sum_probs=66.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh---CCceeehH-HHHHHHHHcCChHH-HHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY---CLCHLATG-DMLRAAVAAKTPLG-IKAKEAMDKGELVSDDLVVGIIDEAMK 105 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~---~~~~i~~d-~l~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~ 105 (195)
++++|+|+|+|||||||+++.|++.+ |+.++.+| +.++..+..+.... ......+. .+...+...+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r--------~i~eva~~~l~ 122 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVR--------RIAEVAKLFAD 122 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHH--------HHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHH--------HHHHHHHHHHh
Confidence 67899999999999999999999998 87776664 44444322111000 00000000 11222222222
Q ss_pred CCCCCCcEEEeCCCCC-HHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHh
Q 029307 106 KPSCQKGFILDGFPRT-EVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 157 (195)
Q Consensus 106 ~~~~~~~~iid~~~~~-~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~ 157 (195)
. +..++.+ +... ...+..+.+.+...+ .++.+|||++|.+++.+|+.
T Consensus 123 ~---G~iVI~d-~~s~~~~~r~~~r~ll~~~g-~p~~vV~Ldap~Evl~~Rl~ 170 (630)
T 1x6v_B 123 A---GLVCITS-FISPYTQDRNNARQIHEGAS-LPFFEVFVDAPLHVCEQRDV 170 (630)
T ss_dssp T---TCEEEEE-CCCCCHHHHHHHHHHHHTTT-CCEEEEEEECCHHHHHHHCT
T ss_pred C---CCEEEEe-CchhhHHHHHHHHHHHHhCC-CCeEEEEEECCHHHHHHHhc
Confidence 2 3344554 3322 234455555554333 35689999999999999976
No 89
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.01 E-value=4.6e-10 Score=86.47 Aligned_cols=120 Identities=18% Similarity=0.110 Sum_probs=73.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCC-CCCHHHH-----------HH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGE-LVSDDLV-----------VG 98 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~ 98 (195)
++++|+|.|++||||||+++.|++.++..+.- +++ ...+++.|+.+++++.... ....... .+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~----~~e-p~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~ 78 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKL----LKF-PERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD 78 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEE----EES-SCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccceE----EEe-cCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999762211 111 1225677888888776543 2322211 11
Q ss_pred HHHHHHcCCCCCCcEEEeCCCCCH-HH----------HHHHHHHHhhcCCCcCEEEEE-EcCHHHHHHHHhcC
Q 029307 99 IIDEAMKKPSCQKGFILDGFPRTE-VQ----------AQKLDEMLEKQGKKVDKVLNF-AIDDAVLEERITGR 159 (195)
Q Consensus 99 ~l~~~l~~~~~~~~~iid~~~~~~-~~----------~~~l~~~l~~~~~~~d~vi~l-~~~~e~~~~Rl~~R 159 (195)
.+...+. .+..+|.|-|.... .. ..++. .+......||++||| ++|++++.+|+..|
T Consensus 79 ~I~paL~---~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~-~~~~~~~~PDlti~L~dv~pe~~~~R~~~~ 147 (216)
T 3tmk_A 79 KIKKDLL---EGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCL-QPDVGLLKPDLTLFLSTQDVDNNAEKSGFG 147 (216)
T ss_dssp HHHHHHH---TTCEEEEESCHHHHHHHHHTTCCTTCCHHHHH-GGGTTSBCCSEEEEEECSCCSCGGGCCSSS
T ss_pred HHHHHHH---cCCEEEEeccHhHHHHHHHhcCCCHHHHHHHH-HHhhCCCCCCEEEEEeCCCHHHHHHHhccC
Confidence 2222233 25567888663221 11 11111 122345789999999 99999999887543
No 90
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.97 E-value=4.4e-10 Score=85.32 Aligned_cols=132 Identities=11% Similarity=0.015 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcccC-CCCCcEEEEEcCCCCChhHHHHHHHHHh---C--CceeehHHHHHHH--H-HcCChHHHHHHHH
Q 029307 14 SVDLMTELLRRMKCA-SKPDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRAA--V-AAKTPLGIKAKEA 84 (195)
Q Consensus 14 ~~~~~~~~~~~~~~~-~~~~~iI~i~G~pGsGKSTla~~L~~~~---~--~~~i~~d~l~r~~--~-~~~~~~~~~~~~~ 84 (195)
..+.+++++++.... ..++.+|+|+|++||||||+++.|+..+ + +.+++.|.+.... . ..+...+.. +
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~---~ 79 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFE---Y 79 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHH---H
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccC---C
Confidence 345666666655433 3566799999999999999999999865 3 3344554432211 1 111111111 1
Q ss_pred HHcCCCCCHHHHHHHHHHHH----------------------cCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEE
Q 029307 85 MDKGELVSDDLVVGIIDEAM----------------------KKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKV 142 (195)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l----------------------~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~v 142 (195)
.. ..++...+.+.+...+ ........+|+|+...-... + ...+|.+
T Consensus 80 ~~--~~~d~~~l~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~-------~~~~d~~ 147 (201)
T 1rz3_A 80 YY--LQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKE---W-------RPFFDFV 147 (201)
T ss_dssp HH--TSSCHHHHHHHTGGGTTTCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTT---T-------GGGCSEE
T ss_pred Cc--cccCHHHHHHHHHHHHhcCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccHH---H-------HhhcCEE
Confidence 10 1122222222211100 01122346888876422111 1 1247899
Q ss_pred EEEEcCHHHHHHHHhcCC
Q 029307 143 LNFAIDDAVLEERITGRW 160 (195)
Q Consensus 143 i~l~~~~e~~~~Rl~~R~ 160 (195)
|||++|.+++.+|+.+|.
T Consensus 148 i~v~~~~~~~~~R~~~R~ 165 (201)
T 1rz3_A 148 VYLDCPREIRFARENDQV 165 (201)
T ss_dssp EEECCC------------
T ss_pred EEEeCCHHHHHHHHhcCC
Confidence 999999999999999996
No 91
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.97 E-value=3.1e-09 Score=92.26 Aligned_cols=127 Identities=17% Similarity=0.095 Sum_probs=74.5
Q ss_pred HHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCC-----ceeehHHHHHHHHHcCChHHHHHHHHHHcCCC
Q 029307 16 DLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL-----CHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL 90 (195)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~-----~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~ 90 (195)
.+...+.+.+.-..+.+++|+|+|++||||||+++.|++.++. .+++. |.+++.+.........-+.. .
T Consensus 356 eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~-D~ir~~l~~~~~f~~~er~~--~--- 429 (546)
T 2gks_A 356 EVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG-DVVRTHLSRGLGFSKEDRIT--N--- 429 (546)
T ss_dssp HHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH-HHHHHHTCTTCCSSHHHHHH--H---
T ss_pred hHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc-hHhhhhhcccccccHHHHHH--H---
Confidence 4555555555323456789999999999999999999998863 67777 44555443211110000000 0
Q ss_pred CCHHHHHHHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcC-EEEEEEcCHHHHHHHHh
Q 029307 91 VSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVD-KVLNFAIDDAVLEERIT 157 (195)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d-~vi~l~~~~e~~~~Rl~ 157 (195)
-..+...+...+. .+.++|+|........+..+.+.+. ..+ .+|||++|.+++.+|+.
T Consensus 430 --l~~i~~~~~~~l~---~G~~VI~d~~~~~~~~r~~~~~~l~----~~d~~vV~L~~~~e~~~~Rl~ 488 (546)
T 2gks_A 430 --ILRVGFVASEIVK---HNGVVICALVSPYRSARNQVRNMME----EGKFIEVFVDAPVEVCEERDV 488 (546)
T ss_dssp --HHHHHHHHHHHHH---TTCEEEEECCCCCHHHHHHHHTTSC----TTCEEEEEEECCGGGHHHHCC
T ss_pred --HHHHHHHHHHHHh---CCCEEEEEcCCCCHHHHHHHHHHhh----cCCEEEEEEeCCHHHHHHHhh
Confidence 0011122222332 3567899965444444444433322 245 89999999999999986
No 92
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.96 E-value=2.2e-10 Score=90.52 Aligned_cols=47 Identities=17% Similarity=0.069 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHh-CCcee
Q 029307 12 VPSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY-CLCHL 61 (195)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~-~~~~i 61 (195)
++..+|........ .+++++|+|.|++||||||+++.|++.+ ++.++
T Consensus 7 ~~~~~~~~~~~~~~---~~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 7 PPKRSCPSFSASSE---GTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp -------------------CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred chhccCCCCccccc---ccCceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 34555655555553 2467899999999999999999999998 56555
No 93
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.93 E-value=1.6e-08 Score=88.31 Aligned_cols=128 Identities=12% Similarity=0.073 Sum_probs=69.9
Q ss_pred HHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhC------CceeehHHHHHHHHHcCChHHHHHHHHHHcCCC
Q 029307 17 LMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC------LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL 90 (195)
Q Consensus 17 ~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~------~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~ 90 (195)
+-..+.+.+.-....+++|+|+|+|||||||+++.|++.++ +.+++. +.++..+..+......-+ ..+
T Consensus 381 Vsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~-D~ir~~l~~~~~f~~~er--~~~--- 454 (573)
T 1m8p_A 381 VVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG-DTVRHELSSELGFTREDR--HTN--- 454 (573)
T ss_dssp HHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH-HHHHHHTCTTCCCSHHHH--HHH---
T ss_pred ccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc-HHHHHHhccccCCChhHH--HHH---
Confidence 33333334422355678999999999999999999999976 345665 445554321110000000 000
Q ss_pred CCHHHHHHHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHh
Q 029307 91 VSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 157 (195)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~ 157 (195)
-..+...+...... +..+|.+........+..+.+.+...+ ...+|||++|.+++.+|..
T Consensus 455 --i~ri~~v~~~~~~~---g~~VI~~~is~~~~~R~~~r~l~~~~g--~~~~V~Lda~~ev~~~R~~ 514 (573)
T 1m8p_A 455 --IQRIAFVATELTRA---GAAVIAAPIAPYEESRKFARDAVSQAG--SFFLVHVATPLEHCEQSDK 514 (573)
T ss_dssp --HHHHHHHHHHHHHT---TCEEEEECCCCCHHHHHHHHHHHHTTS--EEEEEEECCCHHHHHHHCS
T ss_pred --HHHHHHHHHHHHhC---CCEEEEEcCCCcHHHHHHHHHHHHhcC--CeEEEEEeCCHHHHHHHhc
Confidence 00111222322222 344666643323344445555554322 3489999999999999953
No 94
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.89 E-value=4e-09 Score=86.12 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCC
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~ 58 (195)
+++.|+|.|+.||||||+++.|+++++.
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3578999999999999999999999854
No 95
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.88 E-value=3.4e-08 Score=75.00 Aligned_cols=114 Identities=13% Similarity=0.101 Sum_probs=72.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhC---CceeehHHHHHHHHHcCC--hHHH-------------HHH----HHHHc
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKT--PLGI-------------KAK----EAMDK 87 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~---~~~i~~d~l~r~~~~~~~--~~~~-------------~~~----~~~~~ 87 (195)
.++++|+|+|.|||||+|+|+.+.+.+| +.++++++.+++...... .... .+. +....
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~ 88 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQA 88 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhc
Confidence 3557999999999999999999999884 778999999986432111 1000 111 00000
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHH
Q 029307 88 GELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERI 156 (195)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl 156 (195)
+.. .+ ....+... ....+||++. +.......|.+.+. ..+ .+|.+.++++++++|.
T Consensus 89 d~~----~~---~~~~~~~~-~~~~vII~dv-R~~~Ev~~fr~~~g---~~~-~iirI~as~~~R~~Rg 144 (202)
T 3ch4_B 89 DPG----FF---CRKIVEGI-SQPIWLVSDT-RRVSDIQWFREAYG---AVT-QTVRVVALEQSRQQRG 144 (202)
T ss_dssp CTT----TT---HHHHSBTC-CCSEEEECCC-CSHHHHHHHHHHHG---GGE-EEEEEEECHHHHHHTT
T ss_pred Cch----HH---HHHHHHhc-CCCcEEEeCC-CCHHHHHHHHHhCC---CcE-EEEEEECCHHHHHHHh
Confidence 000 00 11112222 2346899987 77777777776542 123 6899999999999994
No 96
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.85 E-value=2.2e-08 Score=74.85 Aligned_cols=117 Identities=15% Similarity=0.064 Sum_probs=65.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCC-ceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHH----HHHHHHHcCC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCL-CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVV----GIIDEAMKKP 107 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~-~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~l~~~ 107 (195)
.+|+|+|++||||||+++.|+..++. .+++.+++.... ..+.. . +.........+. .........
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~-~~~~~-~-------~~~~~~~~~~~~~~l~~~~~~~~~~- 72 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMV-VGGYR-P-------PWESDELLALTWKNITDLTVNFLLA- 72 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTC-CTTCC-C-------GGGCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhh-ccccc-c-------CccchhHHHHHHHHHHHHHHHHHhc-
Confidence 47999999999999999999987754 788886653211 00000 0 000000001111 111222221
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHHHhhcCCC-cCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 108 SCQKGFILDGFPRTEVQAQKLDEMLEKQGKK-VDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 108 ~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~-~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
+..+|+|++. .......+.+.+...+.. .-.+++|.++.+++.+|+..|..+
T Consensus 73 --~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d 125 (189)
T 2bdt_A 73 --QNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKD 125 (189)
T ss_dssp --TCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-
T ss_pred --CCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcccc
Confidence 3458899753 344434444443211111 225788999999999999998654
No 97
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.85 E-value=2.6e-10 Score=86.84 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCL 58 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~ 58 (195)
++|+|+|++||||||+++.|++.++.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999998853
No 98
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.78 E-value=5.9e-08 Score=82.74 Aligned_cols=122 Identities=15% Similarity=0.163 Sum_probs=71.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhC-----CceeehHHHHHHHHHcCChHHHHHHHHHHcCCC----CCHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL----VSDDLVVGII 100 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~-----~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l 100 (195)
..+.+|+|+|.|||||||+++.|++.++ ...++.+++.++........ +....... .........+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~-----~ifd~~g~~~~r~re~~~~~~l 111 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSF-----EFFLPDNEEGLKIRKQCALAAL 111 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCG-----GGGCTTCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcc-----cccCCCCHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999874 45667766443322110000 00000000 0001111112
Q ss_pred ---HHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEE---cCHHHHHHHHhcCC
Q 029307 101 ---DEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFA---IDDAVLEERITGRW 160 (195)
Q Consensus 101 ---~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~---~~~e~~~~Rl~~R~ 160 (195)
...+.. ..+..+|+|........+..+.+.+...+. .+++++ .+++.+.+|+..+.
T Consensus 112 ~~~~~~l~~-~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~---~vv~l~~~~~~~~~i~~r~~~~~ 173 (469)
T 1bif_A 112 NDVRKFLSE-EGGHVAVFDATNTTRERRAMIFNFGEQNGY---KTFFVESICVDPEVIAANIVQVK 173 (469)
T ss_dssp HHHHHHHHT-TCCSEEEEESCCCSHHHHHHHHHHHHHHTC---EEEEEEECCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHh-CCCCEEEEeCCCCCHHHHHHHHHHHHhcCC---cEEEEEEECCCHHHHHHHHHHhh
Confidence 223321 235579999999988888888776665432 356666 55788888887654
No 99
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.78 E-value=1.5e-08 Score=78.36 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=25.1
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
..++.+|+|.|++||||||+++.|+...|
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~~g 45 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKYKN 45 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhccC
Confidence 45678999999999999999999988633
No 100
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.76 E-value=1.8e-08 Score=76.75 Aligned_cols=52 Identities=23% Similarity=0.273 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhC-----CceeehHH
Q 029307 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGD 65 (195)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~-----~~~i~~d~ 65 (195)
..+++++++++.....+++.+|+|.|++||||||+++.|+..+. ..+++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 4 LAALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp HHHHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 34677777776553345678999999999999999999998874 55666644
No 101
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.75 E-value=1.5e-07 Score=73.09 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh-CC
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY-CL 58 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~-~~ 58 (195)
+|++|+|.|++||||||+++.|++++ ++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~ 29 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEW 29 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 46899999999999999999999998 44
No 102
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.73 E-value=1e-08 Score=83.43 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=30.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhC-------CceeehHHH
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC-------LCHLATGDM 66 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~-------~~~i~~d~l 66 (195)
.+.|.+|+|+|++||||||+++.|...++ +.+++.|..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 34567999999999999999999988764 455777653
No 103
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.70 E-value=2.3e-08 Score=75.87 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=31.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhC--CceeehHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC--LCHLATGDM 66 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~--~~~i~~d~l 66 (195)
.++.+|+|+|++||||||+++.|+..++ +.+++.+..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~ 42 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHY 42 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcc
Confidence 4567999999999999999999999888 888887654
No 104
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.64 E-value=2.8e-07 Score=67.94 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=70.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHH---HHHHHHHHHHcC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD---LVVGIIDEAMKK 106 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~ 106 (195)
.++.+++|+|++||||||+++.+.. +...++. +.++..+.+.... ..+... .........+..
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~-d~~~g~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 72 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHFK--PTEVISS-DFCRGLMSDDEND-----------QTVTGAAFDVLHYIVSKRLQL 72 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHSC--GGGEEEH-HHHHHHHCSSTTC-----------GGGHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHcc--CCeEEcc-HHHHHHhcCcccc-----------hhhHHHHHHHHHHHHHHHHhC
Confidence 3567999999999999999998653 5667777 4455444322110 000010 111112222222
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCC
Q 029307 107 PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRW 160 (195)
Q Consensus 107 ~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 160 (195)
+...+++..+......++...+.......| .++++|-|...+-.|...|.
T Consensus 73 ---g~~~~~~~~~~~s~g~~qrv~iAral~~~p-~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 73 ---GKLTVVDATNVQESARKPLIEMAKDYHCFP-VAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp ---TCCEEEESCCCSHHHHHHHHHHHHHTTCEE-EEEEECCCHHHHHHHHHTCS
T ss_pred ---CCeEEEECCCCCHHHHHHHHHHHHHcCCcE-EEEEEeCCHHHHHHHHhccc
Confidence 345788877666665555555666666677 78889999999998877664
No 105
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=98.55 E-value=3.9e-07 Score=74.51 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCChhHHH-HHHHHHhCC
Q 029307 31 PDKRLILVGPPGSGKGTQS-PIIKDEYCL 58 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla-~~L~~~~~~ 58 (195)
+++.|+|.|+.||||||++ +.|++.++.
T Consensus 11 ~~~~I~iEG~~GaGKTT~~~~~L~~~l~~ 39 (341)
T 1osn_A 11 GVLRIYLDGAYGIGKTTAAEEFLHHFAIT 39 (341)
T ss_dssp EEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 3568999999999999999 999998864
No 106
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.55 E-value=1.5e-07 Score=75.94 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=30.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhC-------CceeehHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC-------LCHLATGDM 66 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~-------~~~i~~d~l 66 (195)
.++.+|+|+|++||||||+++.|+..++ +.+++.|..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 5667999999999999999999999766 566666543
No 107
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.54 E-value=6.7e-08 Score=73.58 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
+++.+|+|+||+||||||+++.|+..+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4567999999999999999999999874
No 108
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=98.52 E-value=2.7e-07 Score=75.18 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
+.+.|+|.|+.||||||+++.|++.++
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 357899999999999999999999874
No 109
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.50 E-value=1.1e-06 Score=66.11 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
++.+|+|+||+||||||+++.|+..+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 467999999999999999999998763
No 110
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=98.49 E-value=7.3e-07 Score=73.70 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
+++.|+|.|+.||||||+++.|++.++
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 445799999999999999999999874
No 111
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.47 E-value=4.6e-08 Score=73.52 Aligned_cols=118 Identities=19% Similarity=0.181 Sum_probs=59.3
Q ss_pred EEEEcCCCCChhHHHHHHHHHhC-CceeehHHHHHHHHHcCCh--------HHHHHHHHHHcCCCCCHH--------HHH
Q 029307 35 LILVGPPGSGKGTQSPIIKDEYC-LCHLATGDMLRAAVAAKTP--------LGIKAKEAMDKGELVSDD--------LVV 97 (195)
Q Consensus 35 I~i~G~pGsGKSTla~~L~~~~~-~~~i~~d~l~r~~~~~~~~--------~~~~~~~~~~~~~~~~~~--------~~~ 97 (195)
|+|+||+||||||+++.|.+.+. ...+++...-|. ...+.. .-..+.+...++.++... +..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~-pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~ 82 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT-PRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV 82 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSC-CCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccC-CCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence 89999999999999999988763 222222100000 000000 012333444444332111 112
Q ss_pred HHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCC
Q 029307 98 GIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIH 162 (195)
Q Consensus 98 ~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~ 162 (195)
..+...+.. +..+|+|... .-...+.+. .+..+..++.+-.+.+++.+|+.+|..+
T Consensus 83 ~~v~~~l~~---g~~vil~id~---~g~~~~k~~---~~~~~~~Ifi~pps~e~L~~RL~~Rg~e 138 (186)
T 1ex7_A 83 ASVKQVSKS---GKTCILDIDM---QGVKSVKAI---PELNARFLFIAPPSVEDLKKRLEGRGTE 138 (186)
T ss_dssp HHHHHHHHH---TSEEEEECCH---HHHHHHHTC---GGGCCEEEEEECSCHHHHHHHHHHHCCS
T ss_pred ceeeehhhC---CCEEEecCCH---HHHHHHHHh---cccCceEEEEeCCCHHHHHHHHHhcCCC
Confidence 333333433 5668888543 222333221 1123423444455679999999999754
No 112
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.47 E-value=6.8e-07 Score=77.66 Aligned_cols=128 Identities=14% Similarity=0.144 Sum_probs=58.2
Q ss_pred HHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhC------CceeehHHHHHHHHHcCChHHH-HHHHHHHcC
Q 029307 16 DLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC------LCHLATGDMLRAAVAAKTPLGI-KAKEAMDKG 88 (195)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~------~~~i~~d~l~r~~~~~~~~~~~-~~~~~~~~~ 88 (195)
++...+.+.+.....++.+|+|+|++||||||+++.|+..++ +.+++.+++. +.+........ ......
T Consensus 353 eV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~-~~l~~~l~f~~~~r~~~~--- 428 (552)
T 3cr8_A 353 EVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR-RHLSSELGFSKAHRDVNV--- 428 (552)
T ss_dssp HHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH-HHTTSSCCCSHHHHHHHH---
T ss_pred chhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH-HhhccccCCCHHHHHHHH---
Confidence 333344444422234578999999999999999999999874 3457775543 22111100000 000000
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHh
Q 029307 89 ELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERIT 157 (195)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~ 157 (195)
..+...+.. +.. ....++..+............+.+...+ .+ .+|||++|.+++.+|..
T Consensus 429 -----r~i~~v~q~-l~~--~~~ivi~~~~~~~~~~r~~~r~lL~~~g-~f-~~V~L~~~~e~~~~R~~ 487 (552)
T 3cr8_A 429 -----RRIGFVASE-ITK--NRGIAICAPIAPYRQTRRDVRAMIEAVG-GF-VEIHVATPIETCESRDR 487 (552)
T ss_dssp -----HHHHHHHHH-HHH--TTCEEEECCCCCCHHHHHHHHHHHHTTS-EE-EEEEECC----------
T ss_pred -----HHHHHHHHH-HHh--cCCEEEEecCCccHHHHHHHHHHHHHcC-CE-EEEEEcCCHHHHHHhcc
Confidence 001111111 111 1223444433222344445556665443 23 79999999999999965
No 113
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=98.36 E-value=8.8e-07 Score=71.13 Aligned_cols=109 Identities=15% Similarity=0.114 Sum_probs=67.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhC---CceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK 106 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~---~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 106 (195)
+.+++|+|.|..||||+|+.+.|.+.++ +.++... .+.+.... .. .+......
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~----------~Pt~eE~~----~~----------yl~R~~~~ 139 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALT----------KPTETERG----QW----------YFQRYVAT 139 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECC----------SCCHHHHT----SC----------TTHHHHTT
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeC----------CcChHHHh----ch----------HHHHHHHh
Confidence 5689999999999999999999999985 4444431 11111111 10 11233333
Q ss_pred C-CCCCcEEEeCCC------------CCHH-------HHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCC
Q 029307 107 P-SCQKGFILDGFP------------RTEV-------QAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHP 163 (195)
Q Consensus 107 ~-~~~~~~iid~~~------------~~~~-------~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~ 163 (195)
+ ..+..+|.|.+. .+.. +...|+..+...+ .+++.+||+++.++..+|+.+|..++
T Consensus 140 LP~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G-~~~lKf~L~Is~eeq~kR~~~R~~dp 215 (304)
T 3czq_A 140 FPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEG-IHLFKFWINIGREMQLKRFHDRRHDP 215 (304)
T ss_dssp CCCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHT-CEEEEEEEECCHHHHHHHHHHHHHCT
T ss_pred cccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCC-CeeEEEEEECCHHHHHHHHHHhhcCc
Confidence 4 335567777432 1221 1122223344444 68899999999999999999886543
No 114
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.35 E-value=1.3e-07 Score=75.74 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhC-----CceeehHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGDMLR 68 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~-----~~~i~~d~l~r 68 (195)
++++|+|+|++||||||+++.|++.++ +.+++.|++.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 457899999999999999999999887 78899888764
No 115
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.26 E-value=6.5e-07 Score=66.61 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=62.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCC--ceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCC-----HHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCL--CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS-----DDLVVGIIDE 102 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~--~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~ 102 (195)
.++.+|+|+|++||||||+++.|+..++. .+++.+++.... ..... ..+++ ...+.+.+..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~-~~~~~-----------~~~~~~~~~~~~~v~~~l~~ 74 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI-KHGRI-----------DPWLPQSHQQNRMIMQIAAD 74 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC-CSSCC-----------CTTSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhh-hcccc-----------cCCccchhhhhHHHHHHHHH
Confidence 35679999999999999999999997644 467766653221 10000 00111 1112222211
Q ss_pred HHcC-CCCCCcEEEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCC
Q 029307 103 AMKK-PSCQKGFILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWI 161 (195)
Q Consensus 103 ~l~~-~~~~~~~iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~ 161 (195)
.... ...+..+++++..... ....+. ..+..+ .++++.++.+++..|+..|..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~-~l~~~~----~~~~~~-~~ls~~~~~~v~~~R~~~r~~ 128 (191)
T 1zp6_A 75 VAGRYAKEGYFVILDGVVRPD-WLPAFT----ALARPL-HYIVLRTTAAEAIERCLDRGG 128 (191)
T ss_dssp HHHHHHHTSCEEEECSCCCTT-TTHHHH----TTCSCE-EEEEEECCHHHHHHHHHTTCT
T ss_pred HHHHHhccCCeEEEeccCcHH-HHHHHH----hcCCCe-EEEEecCCHHHHHHHHHhcCC
Confidence 1100 0113346778754321 111111 112233 689999999999999999853
No 116
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.24 E-value=5.2e-07 Score=73.62 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=33.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l 66 (195)
.++++|+|+||+||||||++..|+++++..+||.|.+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 3456899999999999999999999999999998764
No 117
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.24 E-value=4.9e-07 Score=73.44 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=31.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l 66 (195)
+++|+|+||+||||||++..|+++++..+++.|.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 35899999999999999999999999999998654
No 118
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.16 E-value=1.7e-06 Score=67.48 Aligned_cols=40 Identities=28% Similarity=0.391 Sum_probs=36.0
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA 72 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l~r~~~~ 72 (195)
++|+|+|++||||||+++.|.+++|+.+++.++.+++.+.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~ 41 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA 41 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence 4899999999999999999999999999999887777654
No 119
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.15 E-value=1.2e-06 Score=71.61 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=31.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l 66 (195)
++|+|+||+||||||++..|++.++..+|+.|.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 5899999999999999999999999999998765
No 120
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.13 E-value=1.6e-06 Score=69.90 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=31.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGD 65 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~ 65 (195)
+.+++|+|+||+||||||++..|+++++..+||.|.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 345789999999999999999999999988888754
No 121
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.13 E-value=3.6e-06 Score=67.36 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=36.1
Q ss_pred HHHHHHHHhcccC--CCCCcEEEEEcCCCCChhHHHHHHHHHhCCcee--ehHHH
Q 029307 16 DLMTELLRRMKCA--SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHL--ATGDM 66 (195)
Q Consensus 16 ~~~~~~~~~~~~~--~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i--~~d~l 66 (195)
.+..+..+.+... .+.|..++|.||||+|||++++.+++.++..++ +..++
T Consensus 18 ~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l 72 (293)
T 3t15_A 18 KLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL 72 (293)
T ss_dssp HHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHh
Confidence 3444555554433 345568889999999999999999999986554 44444
No 122
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.11 E-value=1.5e-06 Score=70.18 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=31.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeehHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDM 66 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~l 66 (195)
+++|+|+||+||||||++..|+++++..+||.|..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 46899999999999999999999999888887543
No 123
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.04 E-value=2.6e-06 Score=63.94 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
++.+|+|+|++||||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999999999999999999876
No 124
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.04 E-value=6.1e-06 Score=66.08 Aligned_cols=54 Identities=20% Similarity=0.154 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHhcc----cCCCCCcEEEEEcCCCCChhHHHHHHHHHhC-------Ccee-ehHHH
Q 029307 13 PSVDLMTELLRRMK----CASKPDKRLILVGPPGSGKGTQSPIIKDEYC-------LCHL-ATGDM 66 (195)
Q Consensus 13 ~~~~~~~~~~~~~~----~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~-------~~~i-~~d~l 66 (195)
+..++++.+.++.. ...+++.+|+|+|++||||||+++.|+..++ ...+ +.|++
T Consensus 8 ~~~~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 8 VLDYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 34445555554332 2356678999999999999999999998874 3345 77654
No 125
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.00 E-value=4.2e-06 Score=65.06 Aligned_cols=31 Identities=23% Similarity=0.071 Sum_probs=27.0
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
-.++.+|.|+|++||||||+++.|+..+|..
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 4566799999999999999999999988865
No 126
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.99 E-value=4.7e-06 Score=71.65 Aligned_cols=51 Identities=8% Similarity=0.016 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCC-------ceeehHH
Q 029307 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL-------CHLATGD 65 (195)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~-------~~i~~d~ 65 (195)
.++...+.+.|.-..+.+++|+|+|.+||||||+++.|+++++. .+++.|+
T Consensus 378 peV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 378 PEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred hhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 44555555555423456689999999999999999999999986 4666544
No 127
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.97 E-value=2.7e-05 Score=62.67 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=36.7
Q ss_pred cCCCC-CHHHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 8 NLEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 8 ~~~~~-~~~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
+++++ -..+++..+.+... ....+..+++.|+||+|||++++.+++.++..++.+
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~-~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITS-KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHH-TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred CHHHHhCcHHHHHHHHHHHH-cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34444 33344444443333 344456788888899999999999999998766654
No 128
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.96 E-value=4.1e-06 Score=69.88 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=30.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeehHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGD 65 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~ 65 (195)
+++|+|.||+||||||++..|++.++..+||.|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 4689999999999999999999999988888754
No 129
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.94 E-value=6.5e-06 Score=60.98 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
++.+|+|+||+||||||+++.|+..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999999865
No 130
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.90 E-value=2.4e-05 Score=57.61 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh----C--CceeehHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY----C--LCHLATGDMLRA 69 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~----~--~~~i~~d~l~r~ 69 (195)
++..++|.|++|+||||+++.++..+ | +.+++..+++..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~ 81 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR 81 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 35689999999999999999998766 3 456777666543
No 131
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.89 E-value=0.00023 Score=53.03 Aligned_cols=40 Identities=23% Similarity=0.453 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+.+..+.+... ...+..++|+|++|+|||++++.+++.+
T Consensus 23 ~~~~~~l~~~l~--~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 23 DEVIQRLKGYVE--RKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp HHHHHHHHHHHH--TTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344444444333 2223349999999999999999999875
No 132
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=1.2e-05 Score=67.89 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=29.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
+.|+-|+|.||||+|||++|++++.+++..++.+
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 4456799999999999999999999999776654
No 133
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=1.2e-05 Score=67.78 Aligned_cols=34 Identities=29% Similarity=0.527 Sum_probs=29.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
+.|+=|+|.||||+|||++|++++.++|+.++.+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 4456799999999999999999999999776654
No 134
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=1.4e-05 Score=67.38 Aligned_cols=34 Identities=24% Similarity=0.514 Sum_probs=29.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
+.|+=|+|.||||+|||++|++++.+++..++.+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 3455699999999999999999999999776655
No 135
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.82 E-value=4.3e-05 Score=65.45 Aligned_cols=110 Identities=16% Similarity=0.138 Sum_probs=68.1
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhC---CceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 105 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~---~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 105 (195)
.+.+++|+|.|..||||+|+.+.|.+.++ +.++.... +..... ... .+.....
T Consensus 297 ~~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~----------Pt~~E~-----~~~---------yl~R~~~ 352 (500)
T 3czp_A 297 RQHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAA----------PTEEER-----AQP---------YLWRFWR 352 (500)
T ss_dssp GGCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCS----------CCHHHH-----TSC---------TTHHHHT
T ss_pred CCCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCC----------CChhhh-----cch---------HHHHHHH
Confidence 45788999999999999999999999885 44444411 111110 010 1122333
Q ss_pred CCC-CCCcEEEeCCC------------CCHH-------HHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCC
Q 029307 106 KPS-CQKGFILDGFP------------RTEV-------QAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHP 163 (195)
Q Consensus 106 ~~~-~~~~~iid~~~------------~~~~-------~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~ 163 (195)
.+. .+..+|.|.+. .+.. +...|+..+...+. +.+.+||++|.++..+|+.+|..++
T Consensus 353 ~lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~-~i~Kf~L~is~eeQ~~R~~~R~~~p 429 (500)
T 3czp_A 353 HIPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGI-IVVKFWLAIDKQTQMERFKEREKTP 429 (500)
T ss_dssp TCCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTE-EEEEEEEECCHHHHHHHHHHHHHSS
T ss_pred hCCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCC-eEEEEEEECCHHHHHHHHHHHhcCC
Confidence 333 34567777532 1222 22233333554444 6699999999999999999997654
No 136
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=1.3e-05 Score=66.84 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=29.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
+.|+=|+|.||||+|||.+|++++.+.+..++++
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 3455699999999999999999999999876654
No 137
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.81 E-value=3.5e-05 Score=56.27 Aligned_cols=41 Identities=15% Similarity=0.331 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
..+.+..+.+... ...+..++|+|++|+|||++++.+++.+
T Consensus 27 ~~~~~~~l~~~l~--~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 27 RDEEIRRTIQVLQ--RRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CHHHHHHHHHHHT--SSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHh--cCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4455566555543 2345678999999999999999999986
No 138
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.80 E-value=7.6e-06 Score=67.17 Aligned_cols=47 Identities=26% Similarity=0.280 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcccC--CCCCcEEEEEcCCCCChhHHHHHHHHHhCCce
Q 029307 14 SVDLMTELLRRMKCA--SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCH 60 (195)
Q Consensus 14 ~~~~~~~~~~~~~~~--~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~ 60 (195)
...+.+.+.+.+... ....+.|+|.|++||||||+++.|++.+++.+
T Consensus 4 ~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 4 THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp HHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 345555555543322 33345699999999999999999999998776
No 139
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.79 E-value=1.2e-05 Score=59.78 Aligned_cols=24 Identities=33% Similarity=0.682 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+|+|+||+||||||+++.|+..+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999999765
No 140
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.79 E-value=1.9e-05 Score=61.34 Aligned_cols=34 Identities=35% Similarity=0.495 Sum_probs=28.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
+.+.-|+|.|+||+|||++++.+++.++..++.+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~ 70 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAM 70 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 3455799999999999999999999998765543
No 141
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.78 E-value=3.5e-05 Score=56.24 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
...+..+.+... ...+..++|+|++|+||||+++.+++.+
T Consensus 28 ~~~~~~l~~~l~--~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 28 DTEIRRAIQILS--RRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp HHHHHHHHHHHT--SSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh--CCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 444555554433 2345578999999999999999999986
No 142
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.75 E-value=2.2e-05 Score=62.91 Aligned_cols=41 Identities=27% Similarity=0.489 Sum_probs=32.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh--HHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLRAA 70 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~--d~l~r~~ 70 (195)
..+..|+|.|+||+|||++++.+++.++..++.+ .++....
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 89 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence 4456899999999999999999999998665544 4555443
No 143
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.75 E-value=2.4e-05 Score=60.89 Aligned_cols=32 Identities=31% Similarity=0.528 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
+.-++|.|+||+||||+++.++..++.+++.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 45699999999999999999999988655543
No 144
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.75 E-value=2.3e-05 Score=61.80 Aligned_cols=34 Identities=29% Similarity=0.561 Sum_probs=28.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
..+..++|.|+||+|||++++.+++.++..++.+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v 82 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIRV 82 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 3456799999999999999999999998765543
No 145
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.74 E-value=2.4e-05 Score=62.13 Aligned_cols=32 Identities=38% Similarity=0.653 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceee
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~ 62 (195)
.+..++|.|+||+||||+++.+++.++..++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 45689999999999999999999999865544
No 146
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.74 E-value=4.2e-05 Score=63.37 Aligned_cols=41 Identities=22% Similarity=0.205 Sum_probs=31.9
Q ss_pred HHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCCceee
Q 029307 22 LRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (195)
Q Consensus 22 ~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~ 62 (195)
.+.....-+++.+|+|.|||||||||+++.|+..++..++.
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 33333344566799999999999999999999988766555
No 147
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.73 E-value=5e-05 Score=65.06 Aligned_cols=110 Identities=16% Similarity=0.147 Sum_probs=60.7
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhC---CceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 105 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~---~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 105 (195)
.+.+++|+|.|..||||+|+.+.|.+.++ +.++.... +...... .-+ +.....
T Consensus 40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~----------Pt~~E~~-----~~y---------l~R~~~ 95 (500)
T 3czp_A 40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLR----------PSDEELE-----RPP---------QWRFWR 95 (500)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSS----------CCHHHHT-----SCT---------THHHHH
T ss_pred CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCC----------CChhhcc-----CCh---------hhhHHH
Confidence 46789999999999999999999999995 33444311 1011000 000 111111
Q ss_pred CC-CCCCcEEEeCCC------------CCHH-------HHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCC
Q 029307 106 KP-SCQKGFILDGFP------------RTEV-------QAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHP 163 (195)
Q Consensus 106 ~~-~~~~~~iid~~~------------~~~~-------~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~ 163 (195)
.+ ..+..+|.|.+. .+.. +...|+..+...+. +++.+||++|.++..+|+.+|..++
T Consensus 96 ~lP~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~-~i~KffL~is~eeq~kRl~~R~~~p 172 (500)
T 3czp_A 96 RLPPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGA-LLFKFWFHLSKKQLKERLKALEKDP 172 (500)
T ss_dssp HCCCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTC-EEEEEEEECCHHHHHHCC-------
T ss_pred hCCCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCC-eEEEEEEECCHHHHHHHHHHHhcCC
Confidence 12 234456666431 1222 22223333554444 6699999999999999999997654
No 148
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.72 E-value=3.2e-05 Score=61.23 Aligned_cols=29 Identities=31% Similarity=0.602 Sum_probs=24.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceee
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~ 62 (195)
-++|.|||||||||+++.|+..++...+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~~~i~ 74 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGLNFIS 74 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCCCEEE
Confidence 39999999999999999999988754443
No 149
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.72 E-value=2.2e-05 Score=59.28 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
++.+|+|+||+||||||+++.|.+.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999998764
No 150
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=2.2e-05 Score=66.51 Aligned_cols=34 Identities=26% Similarity=0.520 Sum_probs=29.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
+.|+=|+|.||||+|||++|++++.+++..++.+
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 4566799999999999999999999999876654
No 151
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.71 E-value=1.8e-05 Score=59.51 Aligned_cols=26 Identities=31% Similarity=0.486 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
++.+++|+||+||||||+.+.|...+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998755
No 152
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.71 E-value=4.8e-05 Score=62.39 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
.+..|+|.||||+|||++|+.|++.++.+++..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 82 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence 445799999999999999999999998776654
No 153
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.70 E-value=3.8e-05 Score=60.30 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=29.4
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
...+..++|+|+||+|||++|+.+++..+.+++.+
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 34456799999999999999999999998776554
No 154
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.70 E-value=3e-05 Score=65.15 Aligned_cols=34 Identities=32% Similarity=0.539 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
+.|+=|+|.||||+|||.+|++++.+++..++.+
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 4456799999999999999999999999876655
No 155
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.70 E-value=2.2e-05 Score=59.32 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=29.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeehH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATG 64 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d 64 (195)
..++.|+|+|++||||||+|..|+++.+ ..|+.|
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 3456799999999999999999999876 778774
No 156
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.69 E-value=4.8e-05 Score=62.38 Aligned_cols=33 Identities=30% Similarity=0.556 Sum_probs=28.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceee
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~ 62 (195)
..+..|+|+|+||+|||++++.+++.++..++.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 456689999999999999999999999866553
No 157
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.69 E-value=2.5e-05 Score=57.99 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
++++|+|++||||||+.+.|+..+++.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 478999999999999999999987643
No 158
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.68 E-value=3.3e-05 Score=62.36 Aligned_cols=34 Identities=29% Similarity=0.563 Sum_probs=28.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
..+.-|+|.||||+|||++++.+++..+..++.+
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 3456799999999999999999999998665543
No 159
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=97.68 E-value=7.2e-05 Score=59.40 Aligned_cols=109 Identities=17% Similarity=0.132 Sum_probs=68.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhC---CceeehHHHHHHHHHcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP 107 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~---~~~i~~d~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 107 (195)
.+++|+|.|..||||.++.+.|.+.++ +.+++... +... +..-..+......+
T Consensus 74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~----------Pt~e--------------E~~~~ylwR~~~~l 129 (289)
T 3rhf_A 74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKA----------PTDE--------------EKSHDFLWRIEKQV 129 (289)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCS----------CCHH--------------HHTSCTTHHHHTTC
T ss_pred CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCC----------CChh--------------hhcCCHHHHHHHhC
Confidence 578999999999999999999999995 44444311 0000 00001122333333
Q ss_pred C-CCCcEEEeCCC------------CCH-------HHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcCCCCCC
Q 029307 108 S-CQKGFILDGFP------------RTE-------VQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGRWIHPS 164 (195)
Q Consensus 108 ~-~~~~~iid~~~------------~~~-------~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~ 164 (195)
. .+...|+|... .+. .+...|+..|...|..+ +-+||.++.++..+|+.+|..++.
T Consensus 130 P~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~i-lKf~LhIskeEQ~kR~~~R~~dP~ 205 (289)
T 3rhf_A 130 PAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTI-VKVMLNISKDEQKKRLIARLDDPS 205 (289)
T ss_dssp CCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEE-EEEEEECCHHHHHHHHHHHHHCGG
T ss_pred CCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEE-EEEEEECCHHHHHHHHHHHhcCCc
Confidence 3 34466777421 111 22345556666666665 899999999999999999976544
No 160
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.64 E-value=4.3e-05 Score=54.47 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+.-|+|.|+||+|||++|+.+.+..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3458999999999999999999865
No 161
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.63 E-value=2.3e-05 Score=60.15 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=18.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHH-HHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIK-DEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~-~~~ 56 (195)
.++.+|+|+||+||||||+++.|+ ..+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 456799999999999999999999 654
No 162
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.61 E-value=4.8e-05 Score=61.55 Aligned_cols=31 Identities=29% Similarity=0.557 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh-CCcee
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY-CLCHL 61 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~-~~~~i 61 (195)
.+.-|+|.||||+|||++++.+++.+ +..++
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence 44679999999999999999999988 55444
No 163
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.59 E-value=3.7e-05 Score=65.00 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
.+..|+|.||||+||||+++.|++.++..++.+
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v 81 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceee
Confidence 345799999999999999999999998776655
No 164
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.59 E-value=7e-05 Score=60.50 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=28.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
..+..++|+|+||+|||++++.+++.++..++..
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 3445699999999999999999999998765544
No 165
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.59 E-value=4.5e-05 Score=58.49 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
+++.+++|+||+||||||+.+.|+..+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4567999999999999999999998654
No 166
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.58 E-value=9.3e-05 Score=62.70 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=27.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhC--Cceee
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC--LCHLA 62 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~--~~~i~ 62 (195)
..+.-++|.||||+|||++|+.+++.++ +.++.
T Consensus 61 ~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~ 95 (456)
T 2c9o_A 61 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCP 95 (456)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEE
T ss_pred CCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEE
Confidence 3446799999999999999999999998 55544
No 167
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.57 E-value=4.3e-05 Score=58.37 Aligned_cols=27 Identities=33% Similarity=0.588 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+||+||||||+++.|+..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 456789999999999999999999865
No 168
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.57 E-value=5.7e-05 Score=61.35 Aligned_cols=29 Identities=38% Similarity=0.531 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
.+..++|.||||+||||+++.++..++..
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~ 78 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQTN 78 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 34579999999999999999999998654
No 169
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.56 E-value=5.4e-05 Score=62.11 Aligned_cols=33 Identities=27% Similarity=0.548 Sum_probs=27.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
.+.-|+|.||||+|||++|+.+++.++..++.+
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 345699999999999999999999998765544
No 170
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.56 E-value=5.5e-05 Score=60.03 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i 61 (195)
.+..++|+|+||+|||++++.+++.++..++
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~ 79 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3557999999999999999999999976544
No 171
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.56 E-value=5.4e-05 Score=61.16 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
..++.+|+|.|++||||||+++.|+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 3567799999999999999999998865
No 172
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.55 E-value=0.00013 Score=54.58 Aligned_cols=37 Identities=27% Similarity=0.280 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh---C--CceeehHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDMLRA 69 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~---~--~~~i~~d~l~r~ 69 (195)
..++|.|++|+||||+++.+++.+ + +.+++..+++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRE 96 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHH
Confidence 679999999999999999999877 3 344676555443
No 173
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.55 E-value=7.3e-05 Score=59.54 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+.+..++|+|+||+|||++++.+++.+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 344579999999999999999999887
No 174
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.53 E-value=5.6e-05 Score=57.41 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceee
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~ 62 (195)
...++|.||||+||||+|..|++.++-.+++
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 4579999999999999999999987544443
No 175
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.52 E-value=0.00012 Score=55.60 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=27.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhC-----CceeehHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYC-----LCHLATGD 65 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~-----~~~i~~d~ 65 (195)
.+..++|.|+||+||||+++.+++.++ +.+++..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 456899999999999999999998763 34555543
No 176
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.51 E-value=0.00018 Score=57.86 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh---C--CceeehHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGDML 67 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~---~--~~~i~~d~l~ 67 (195)
.+..++|+|+||+||||+++.+++.+ + +.+++..++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 34579999999999999999999977 4 4566765554
No 177
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.51 E-value=7.3e-05 Score=61.52 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
.+..|+|+|+||+|||++|+.|++.++.+++..
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 103 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS 103 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 345699999999999999999999998665544
No 178
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.51 E-value=6.9e-05 Score=56.56 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+..+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345699999999999999999998765
No 179
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.50 E-value=0.00011 Score=62.22 Aligned_cols=31 Identities=32% Similarity=0.410 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
..++|+|+||+||||+++.|++.++..++.+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 5799999999999999999999998665544
No 180
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.49 E-value=2.9e-05 Score=60.70 Aligned_cols=32 Identities=31% Similarity=0.552 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
+.-++|.|+||+|||++++.+++.++.+++.+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 34588999999999999999999987665544
No 181
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.47 E-value=7.7e-05 Score=57.90 Aligned_cols=29 Identities=31% Similarity=0.559 Sum_probs=24.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceee
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~ 62 (195)
-++|.|+||+||||+++.++...+...+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i~ 79 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARVPFIT 79 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 49999999999999999999988644443
No 182
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.47 E-value=0.00014 Score=54.87 Aligned_cols=42 Identities=14% Similarity=0.296 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
.+.+..+..... .+..+..++|.|++|+||||+++.+++.++
T Consensus 29 ~~~~~~l~~~l~-~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 29 EHVLTALANGLS-LGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHHHH-HTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344444444333 133345899999999999999999998774
No 183
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.46 E-value=9.5e-05 Score=53.14 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
++..++|.|++||||||+++.++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999876
No 184
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.45 E-value=0.00011 Score=66.25 Aligned_cols=122 Identities=21% Similarity=0.331 Sum_probs=62.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh--HHHHHHHHHcCChHHHHHHHHHHc----C---------------
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT--GDMLRAAVAAKTPLGIKAKEAMDK----G--------------- 88 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~--d~l~r~~~~~~~~~~~~~~~~~~~----~--------------- 88 (195)
+.++-|+|.||||+|||.+|+.++.+.+.+++++ .+++.+..... .+.+++.+.. .
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGes---e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~ 585 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGES---EANVREIFDKARQAAPCVLFFDELDSIAKA 585 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSC---HHHHHHHHHHHHTTCSEEEECSCGGGCC--
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchH---HHHHHHHHHHHHHcCCceeechhhhHHhhc
Confidence 4455699999999999999999999999877755 34433322111 0111111110 0
Q ss_pred --------CCCCHHHHHHHHHHHHcCCCCCCcE-EEeCCCCCHHHHHHHHHHHhhcCCCcCEEEEEEcCHHHHHHHHhcC
Q 029307 89 --------ELVSDDLVVGIIDEAMKKPSCQKGF-ILDGFPRTEVQAQKLDEMLEKQGKKVDKVLNFAIDDAVLEERITGR 159 (195)
Q Consensus 89 --------~~~~~~~~~~~l~~~l~~~~~~~~~-iid~~~~~~~~~~~l~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~~R 159 (195)
.... ..+...+...+.......++ |+-..++... +...+. ....+|..||+..|....+..+.+.
T Consensus 586 R~~~~~~~~~~~-~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~----lD~All-RpgRfd~~i~v~lPd~~~R~~il~~ 659 (806)
T 3cf2_A 586 RGGNIGDGGGAA-DRVINQILTEMDGMSTKKNVFIIGATNRPDI----IDPAIL-RPGRLDQLIYIPLPDEKSRVAILKA 659 (806)
T ss_dssp -------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSS----SCHHHH-STTTSCCEEEC-----CHHHHTTTT
T ss_pred cCCCCCCCchHH-HHHHHHHHHHHhCCCCCCCEEEEEeCCCchh----CCHhHc-CCCcceEEEEECCcCHHHHHHHHHH
Confidence 0011 12344445566665544444 4443333321 222221 2246889999999987777666654
Q ss_pred C
Q 029307 160 W 160 (195)
Q Consensus 160 ~ 160 (195)
.
T Consensus 660 ~ 660 (806)
T 3cf2_A 660 N 660 (806)
T ss_dssp T
T ss_pred H
Confidence 3
No 185
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00011 Score=59.55 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=25.5
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
..++..++|.|+||+|||++++.+++.+
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999999987
No 186
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.44 E-value=9.9e-05 Score=63.50 Aligned_cols=32 Identities=31% Similarity=0.480 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
+..++|+||||+||||+++.+++.+|+.++.+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 46899999999999999999999998877654
No 187
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.42 E-value=0.00012 Score=60.63 Aligned_cols=33 Identities=30% Similarity=0.576 Sum_probs=28.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
.+..|+|.|+||+|||++++.+++.++..++.+
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 456899999999999999999999998766654
No 188
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.40 E-value=0.00011 Score=54.06 Aligned_cols=25 Identities=24% Similarity=0.025 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++|+|+|++||||||++..|...+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998875
No 189
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.39 E-value=0.0001 Score=66.64 Aligned_cols=34 Identities=29% Similarity=0.567 Sum_probs=29.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
+.|+-|+|.||||+|||++++.+++++|...+.+
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v 269 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence 4566799999999999999999999999776655
No 190
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.37 E-value=0.0002 Score=58.42 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcccC--CCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 14 SVDLMTELLRRMKCA--SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 14 ~~~~~~~~~~~~~~~--~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
..+.+..+....... ...+..++|+|+||+||||+++.+++.+
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 344455554433211 3456689999999999999999999877
No 191
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.37 E-value=0.0002 Score=58.11 Aligned_cols=40 Identities=23% Similarity=0.429 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+++..+..... ..+...++|.||||+||||+++.+++.+
T Consensus 31 ~~~~~~L~~~i~--~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 31 NEVITTVRKFVD--EGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHHHH--TTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 445554444333 2222238999999999999999999976
No 192
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.37 E-value=0.00028 Score=59.98 Aligned_cols=41 Identities=15% Similarity=0.363 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+..+..... ...+..++|+|+||+|||++++.|++.+
T Consensus 185 r~~~i~~l~~~l~--r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 185 RSKEIQRVIEVLS--RRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CHHHHHHHHHHHH--CSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh--ccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3444444444322 2334568999999999999999999986
No 193
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.37 E-value=0.00021 Score=58.26 Aligned_cols=27 Identities=19% Similarity=0.397 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCL 58 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~ 58 (195)
+..++|+||||+|||++++.+++.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999999863
No 194
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.35 E-value=3.3e-05 Score=54.96 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
.-|+|.|+||+|||++|+.+.+..+
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC
Confidence 4589999999999999999988765
No 195
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.35 E-value=0.00016 Score=61.76 Aligned_cols=33 Identities=30% Similarity=0.494 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
.|+-|+|.||||+||||+++.++...+.+++.+
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 345699999999999999999999998766544
No 196
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.35 E-value=0.00015 Score=61.23 Aligned_cols=39 Identities=26% Similarity=0.549 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh-CCce--eehHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY-CLCH--LATGDMLRA 69 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~-~~~~--i~~d~l~r~ 69 (195)
.+.-|+|.||||+|||++++.+++.+ +..+ ++..+++..
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 45679999999999999999999998 5544 444455443
No 197
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.34 E-value=0.00014 Score=57.41 Aligned_cols=29 Identities=31% Similarity=0.559 Sum_probs=24.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCceee
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i~ 62 (195)
-++|.|+|||||||+++.|+...+...+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~ 103 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFIT 103 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEEE
Confidence 49999999999999999999987644443
No 198
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.33 E-value=0.00028 Score=57.38 Aligned_cols=42 Identities=12% Similarity=0.247 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcccC--CCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 15 VDLMTELLRRMKCA--SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 15 ~~~~~~~~~~~~~~--~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+.+..+.+..... ...+..++|.|++|+||||+++.+++.+
T Consensus 26 ~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 26 EDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp HHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34444444433321 3456689999999999999999999876
No 199
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.33 E-value=0.00024 Score=60.76 Aligned_cols=34 Identities=29% Similarity=0.567 Sum_probs=28.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
..+.-++|.|+||+|||++++.+++.++.+++.+
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~v 269 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEE
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3455799999999999999999999998665544
No 200
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.33 E-value=9.9e-05 Score=54.89 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=23.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCc--eeeh
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLC--HLAT 63 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~--~i~~ 63 (195)
+|+|+|++||||||+|..|+.. +.+ |+..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT 31 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-APQVLYIAT 31 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CSSEEEEEC
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CCCeEEEec
Confidence 4899999999999999999987 643 4444
No 201
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.32 E-value=0.00018 Score=52.33 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|+.||||||+.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 566799999999999999999999876
No 202
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.31 E-value=0.00012 Score=56.23 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIK 53 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~ 53 (195)
.++.+++|.|++||||||+++.|+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 356699999999999999999887
No 203
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.31 E-value=0.00013 Score=54.56 Aligned_cols=51 Identities=14% Similarity=0.012 Sum_probs=21.2
Q ss_pred CccccccCCCCCHHHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 2 ASSSAANLEDVPSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
.|++.--.+.-+..++.+++.+.+. ..+...|+|+|.+|+||||+...+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~m~~~~~--~~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 2 GSSHHHHHHSSGLVPRGSHMENLYF--QGQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp ------------------------------CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcccccccccCCcccchhHHHhHhh--cCCeEEEEEECcCCCCHHHHHHHHHh
Confidence 3443333333466677777766544 34567899999999999999999885
No 204
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.30 E-value=0.0016 Score=52.20 Aligned_cols=24 Identities=13% Similarity=-0.006 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.+.++|.||||+||||++..|++.
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 678999999999999999999985
No 205
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.28 E-value=0.0002 Score=57.26 Aligned_cols=31 Identities=39% Similarity=0.611 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i 61 (195)
.+..++|+|++|+|||++++.+++.++..++
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3457999999999999999999998876554
No 206
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.27 E-value=0.00025 Score=57.31 Aligned_cols=24 Identities=29% Similarity=0.678 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
.++|.|+||+||||+++.+++.++
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999998753
No 207
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.27 E-value=0.00025 Score=57.51 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
..++..+.+.....+..+. ++|.|++|+||||+++.|+..+
T Consensus 20 ~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 20 EELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp HHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 3444444443312233344 9999999999999999999965
No 208
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.27 E-value=0.00021 Score=52.76 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++++|+|++||||||++..|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998764
No 209
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.25 E-value=0.0002 Score=57.60 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 28 ASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 28 ~~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.-+++.+++|+|++||||||+++.|+.-+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34567799999999999999999999866
No 210
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.25 E-value=0.00014 Score=55.12 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.++.+++|.|++||||||+++.|+..
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999874
No 211
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.24 E-value=0.00045 Score=56.42 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
...+..++|+|+||+||||+++.+++.+
T Consensus 42 ~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 42 NEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp TCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3445689999999999999999999876
No 212
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.23 E-value=0.00023 Score=55.99 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+||+||||||+.+.|+..+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 345699999999999999999988754
No 213
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.23 E-value=0.00048 Score=56.04 Aligned_cols=44 Identities=14% Similarity=0.273 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCC
Q 029307 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCL 58 (195)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~ 58 (195)
..+++..+.+... .++.+..++|+|++|+||||+++.+++.++.
T Consensus 21 ~~~~~~~L~~~l~-~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 21 QEHVLTALANGLS-LGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CHHHHHHHHHHHH-HTCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHH-hCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4445555544433 2333457899999999999999999998864
No 214
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.22 E-value=0.00024 Score=57.15 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
++.+|+|+|++||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999999765
No 215
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.22 E-value=0.00048 Score=54.71 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
..++|.|+||+||||+++.|++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 379999999999999999999987
No 216
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.22 E-value=0.00052 Score=57.91 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh-----C--CceeehHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY-----C--LCHLATGDML 67 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~-----~--~~~i~~d~l~ 67 (195)
+..++|.|+||+||||+++.+++.+ + +.+++..++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~ 172 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL 172 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 5579999999999999999999876 3 3566765543
No 217
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.21 E-value=0.00045 Score=55.02 Aligned_cols=41 Identities=27% Similarity=0.472 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
..+++..+..... ..+...++|.|+||+||||+++.+++.+
T Consensus 30 ~~~~~~~l~~~l~--~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 30 QEHIVKRLKHYVK--TGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp CHHHHHHHHHHHH--HTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--cCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 3445554443322 2233359999999999999999999976
No 218
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.21 E-value=0.00024 Score=57.74 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+|+|+|++||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457799999999999999999998866
No 219
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.21 E-value=0.00065 Score=54.59 Aligned_cols=38 Identities=24% Similarity=0.193 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhC------CceeehHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYC------LCHLATGDMLRA 69 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~------~~~i~~d~l~r~ 69 (195)
+..++|.|+||+|||+++..++..+. +.+++..+++.+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~ 195 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID 195 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH
Confidence 45799999999999999999987553 334677665544
No 220
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.20 E-value=0.00019 Score=55.55 Aligned_cols=27 Identities=37% Similarity=0.438 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+--+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456799999999999999999997644
No 221
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.20 E-value=0.00051 Score=61.71 Aligned_cols=53 Identities=15% Similarity=0.284 Sum_probs=36.3
Q ss_pred CCCC-CHHHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHh----------CCceeeh
Q 029307 9 LEDV-PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY----------CLCHLAT 63 (195)
Q Consensus 9 ~~~~-~~~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~----------~~~~i~~ 63 (195)
++++ -.++.+..+..... .+.+..++|.|+||+|||++++.|++.+ +..++..
T Consensus 179 ld~iiG~~~~i~~l~~~l~--~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLS--RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHH--CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCccCchHHHHHHHHHHh--CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 4444 34455555444332 2344578999999999999999999987 6666665
No 222
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.19 E-value=0.00024 Score=53.41 Aligned_cols=34 Identities=24% Similarity=0.129 Sum_probs=26.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhC--Cceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC--LCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~--~~~i~~ 63 (195)
.++.+++|.|++||||||++..|+...+ ..+++.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 4567999999999999999999986333 445554
No 223
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.18 E-value=0.00026 Score=56.99 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+|+|+|++||||||++..|+..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 456799999999999999999999866
No 224
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.18 E-value=0.00027 Score=61.24 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=26.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i 61 (195)
++..++|.||||+||||+++.|+..++...+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 4668999999999999999999998875443
No 225
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.18 E-value=0.00028 Score=53.42 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
++.+++|.|++||||||++..|+...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998543
No 226
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.16 E-value=0.00028 Score=55.00 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
+.-|+|+|+||+|||++++.+++..+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 34689999999999999999998763
No 227
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.16 E-value=0.00029 Score=56.58 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+|+|+|+.||||||+++.|+..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998865
No 228
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.16 E-value=0.00026 Score=52.98 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999999876
No 229
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.14 E-value=0.00024 Score=55.02 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|+|++||||||+.+.|+--+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456799999999999999999997644
No 230
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.13 E-value=0.00031 Score=52.98 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
+|+++++|+||||||++|..+..
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHHH
Confidence 57999999999999999888643
No 231
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.13 E-value=0.00052 Score=54.44 Aligned_cols=41 Identities=20% Similarity=0.438 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++++..+.+... .+..+ .++|.|++|+||||+++.+++.+
T Consensus 22 ~~~~~~~l~~~l~-~~~~~-~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 22 QDEVIQRLKGYVE-RKNIP-HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CHHHHHHHHTTTT-TTCCC-CEEEESSSSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh-CCCCC-eEEEECcCCcCHHHHHHHHHHHh
Confidence 3445555544433 22223 49999999999999999999976
No 232
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.12 E-value=0.00077 Score=54.99 Aligned_cols=23 Identities=35% Similarity=0.591 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++|+|++|+||||+++.+++.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999887
No 233
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.11 E-value=0.00023 Score=54.61 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+--+
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999987643
No 234
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.10 E-value=0.00035 Score=51.91 Aligned_cols=25 Identities=32% Similarity=0.394 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+.+++++|++||||||++-.++..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987666654
No 235
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.07 E-value=0.00029 Score=55.39 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+--+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456799999999999999999997644
No 236
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.07 E-value=0.00043 Score=52.21 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+.+.|+|+|.+||||||++..|...+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998875
No 237
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.07 E-value=0.00023 Score=57.39 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=24.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCcee
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i 61 (195)
.++|.|+||+|||++++.+++.++..++
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 5999999999999999999998876543
No 238
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.07 E-value=0.00081 Score=55.03 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
++.++|+|+|+||+||||++..|+..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998775
No 239
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.06 E-value=0.00031 Score=54.57 Aligned_cols=27 Identities=30% Similarity=0.661 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+--+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456799999999999999999998644
No 240
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.05 E-value=0.00064 Score=54.03 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+++..+.+... .+..+ .++|.|++|+||||+++.+++.+
T Consensus 27 ~~~~~~l~~~l~-~~~~~-~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 27 KETIDRLQQIAK-DGNMP-HMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp THHHHHHHHHHH-SCCCC-CEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCC-eEEEECcCCCCHHHHHHHHHHHh
Confidence 344444444333 22223 49999999999999999999975
No 241
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.05 E-value=0.00032 Score=53.60 Aligned_cols=26 Identities=12% Similarity=0.072 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
+++.+++|.|++||||||++..|+..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45679999999999999999999884
No 242
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.04 E-value=0.00035 Score=63.32 Aligned_cols=34 Identities=29% Similarity=0.567 Sum_probs=28.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
..+..|+|+|+|||||||+++.|+..++..++.+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v 269 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEE
Confidence 4566899999999999999999999988665544
No 243
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.04 E-value=0.00033 Score=55.18 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|+.||||||+.+.|+--+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 456689999999999999999988644
No 244
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.04 E-value=0.00033 Score=55.34 Aligned_cols=27 Identities=44% Similarity=0.754 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+--+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456689999999999999999997754
No 245
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.04 E-value=0.00097 Score=54.01 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
+.+.+..+.+.+. .++-+..++|.|++|+||||+++.+++.++..
T Consensus 7 ~~~~~~~l~~~i~-~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 7 LRPDFEKLVASYQ-AGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp GHHHHHHHHHHHH-TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHH-cCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 3445555555444 23445679999999999999999999988653
No 246
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.03 E-value=0.00017 Score=53.14 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.|+|++||||||+++.|...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998876
No 247
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.03 E-value=0.00031 Score=55.65 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++-+++|.|++||||||+.+.|+--+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 456689999999999999999997644
No 248
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.03 E-value=0.00034 Score=54.90 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+--+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 456689999999999999999997644
No 249
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.03 E-value=0.00037 Score=59.56 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+|+|+|++||||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 567799999999999999999998765
No 250
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.03 E-value=0.00043 Score=55.39 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+|+|+|++||||||++..|+..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998655
No 251
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.03 E-value=0.00044 Score=56.86 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+|+|+|+.||||||+++.|+..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 356799999999999999999999865
No 252
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.03 E-value=0.0004 Score=53.89 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+++|.|++||||||+.+.|+--+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998643
No 253
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.02 E-value=0.00033 Score=54.56 Aligned_cols=27 Identities=37% Similarity=0.564 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+.+.|+--+
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356689999999999999999997754
No 254
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.02 E-value=0.00034 Score=55.18 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++-+++|.|++||||||+.+.|+--+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456689999999999999999997643
No 255
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.02 E-value=0.00043 Score=54.55 Aligned_cols=26 Identities=35% Similarity=0.606 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.++.+++|.|+.||||||+.+.|+--
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45668999999999999999999874
No 256
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.02 E-value=0.00053 Score=58.79 Aligned_cols=31 Identities=32% Similarity=0.550 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceee
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~ 62 (195)
+.-++|.||||+||||+++.++...+...+.
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i~ 94 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEARVPFIT 94 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 3459999999999999999999988655443
No 257
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.02 E-value=0.00042 Score=54.06 Aligned_cols=26 Identities=31% Similarity=0.541 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.++.+++|.|++||||||+.+.|+--
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999874
No 258
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.01 E-value=0.00037 Score=54.65 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|+.||||||+.+.|+--+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456799999999999999999997643
No 259
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.01 E-value=0.00037 Score=52.90 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
+.+++|.|+.||||||+.+.|+-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999875
No 260
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.00 E-value=0.00032 Score=53.53 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|+.||||||+.+.|+--+
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999997644
No 261
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.00 E-value=0.00061 Score=53.71 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
...|+|.||||+|||+++..|+..+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhh
Confidence 4589999999999999999999865
No 262
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.99 E-value=0.00037 Score=53.65 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|+.||||||+.+.|+--+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356689999999999999999998754
No 263
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.99 E-value=0.00037 Score=54.61 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|+.||||||+.+.|+--+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456689999999999999999997644
No 264
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.99 E-value=0.00074 Score=51.04 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+..+|+|+|.+||||||+...|+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998864
No 265
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.99 E-value=0.00037 Score=54.00 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|+.||||||+.+.|+--+
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356689999999999999999998644
No 266
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.99 E-value=0.00049 Score=54.62 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|+|||||||++..|+..+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999988754
No 267
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.97 E-value=0.00086 Score=54.60 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
-.++.++.|+|+|||||||+.+.|...+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4567799999999999999999998643
No 268
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.95 E-value=0.00048 Score=56.69 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 13 PSVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
..++.+++..++-....++...|+|.|.+||||||+++++.-.+
T Consensus 14 ~~s~~Id~~l~~~~~~~~~~~killlG~~~SGKST~~kq~~i~~ 57 (362)
T 1zcb_A 14 ERSKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMRIIH 57 (362)
T ss_dssp -----------------CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHhcCccEEEEECCCCCcHHHHHHHHHHHh
Confidence 34555555555433334567789999999999999999996544
No 269
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.95 E-value=0.00044 Score=54.45 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|+.||||||+.+.|+--+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 456799999999999999999987643
No 270
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.93 E-value=0.00051 Score=57.84 Aligned_cols=26 Identities=35% Similarity=0.379 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+|.+|+|+|++||||||++..|+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998766
No 271
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.93 E-value=0.0013 Score=53.86 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
...+|+|+|+|||||||+...|...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998754
No 272
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.92 E-value=0.00045 Score=53.90 Aligned_cols=27 Identities=33% Similarity=0.462 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|+.||||||+.+.|+--+
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 356689999999999999999987643
No 273
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.91 E-value=0.00061 Score=56.27 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+|+|+|++||||||+.+.|+..+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345689999999999999999998765
No 274
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.91 E-value=0.00053 Score=52.44 Aligned_cols=34 Identities=24% Similarity=0.139 Sum_probs=26.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh-----CCceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~-----~~~~i~~ 63 (195)
.++.+++|.|+|||||||++..++... +..+++.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 345699999999999999988876543 4556655
No 275
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.91 E-value=0.00082 Score=61.20 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+..++|+|+||+||||+++.|++.+
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 34468999999999999999999987
No 276
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.90 E-value=0.00047 Score=54.69 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|+.||||||+.+.|+--+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 355689999999999999999998644
No 277
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.89 E-value=0.00057 Score=56.16 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++-+++|.||+||||||+.+.|+--.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 456689999999999999999998643
No 278
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.88 E-value=0.00068 Score=50.05 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
..-|+|+|++|+||||+|..|.+ .|+..++-
T Consensus 16 G~gvli~G~SGaGKStlal~L~~-rG~~lvaD 46 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID-RGHQLVCD 46 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH-TTCEEEES
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCeEecC
Confidence 45699999999999999999988 47776665
No 279
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.88 E-value=0.00051 Score=53.71 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|+.||||||+.+.|+--+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356689999999999999999987643
No 280
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.88 E-value=0.00065 Score=57.33 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+|.+|+|+|++||||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 47799999999999999999999766
No 281
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.86 E-value=0.00069 Score=55.72 Aligned_cols=27 Identities=33% Similarity=0.564 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++-+++|.||+||||||+.+.|+--.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 456799999999999999999998643
No 282
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.85 E-value=0.00057 Score=56.07 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCL 58 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~ 58 (195)
..+++|+|++||||||+++.|+..+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999998754
No 283
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.85 E-value=0.0007 Score=56.08 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++-+++|.||+||||||+.+.|+--+
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 456799999999999999999998644
No 284
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.84 E-value=0.00042 Score=55.92 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=22.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
-++|.|+||+|||++++.+++.++
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCc
Confidence 499999999999999999999875
No 285
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.82 E-value=0.00075 Score=55.54 Aligned_cols=27 Identities=41% Similarity=0.567 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++-+++|.||+||||||+.+.|+--+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 456789999999999999999998643
No 286
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.82 E-value=0.001 Score=53.37 Aligned_cols=33 Identities=15% Similarity=0.083 Sum_probs=28.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhCCceeehHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYCLCHLATGD 65 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~d~ 65 (195)
..++|.|++|+||||+++.+.+..++.+++...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 589999999999999999999988877777643
No 287
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.82 E-value=0.0017 Score=58.19 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+..++|+|+||+|||++++.|++.+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999976
No 288
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.81 E-value=0.00089 Score=54.97 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
-+|+|+||+||||||+.+.|...+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 489999999999999999987755
No 289
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.81 E-value=0.00091 Score=54.11 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+|+|+|++|+||||++..|+..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998866
No 290
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.81 E-value=0.00079 Score=55.62 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++-+++|.||+||||||+.+.|+--+
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456789999999999999999998643
No 291
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.80 E-value=0.00099 Score=51.14 Aligned_cols=28 Identities=18% Similarity=0.048 Sum_probs=23.2
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
..+..+++++|++|+||||.+-.++..+
T Consensus 9 ~~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 9 KKIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp --CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3456799999999999999998888776
No 292
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.78 E-value=0.00081 Score=55.21 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.++-+++|.||+||||||+.+.|+--
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34568999999999999999999864
No 293
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.78 E-value=0.0011 Score=53.17 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+.-|+|+|+||+|||++|+.+.+..
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhC
Confidence 4568999999999999999999854
No 294
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.78 E-value=0.00076 Score=53.09 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
++.+++|.|++||||||++..++..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998853
No 295
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.78 E-value=0.00085 Score=55.27 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++-+++|.|++||||||+.+.|+--+
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 456689999999999999999987643
No 296
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.78 E-value=0.00062 Score=55.93 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
++.+++|+|++||||||+.+.|...+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 356899999999999999999998663
No 297
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.77 E-value=0.00068 Score=54.12 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|+.||||||+.+.|+--+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456689999999999999999997644
No 298
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.74 E-value=0.00042 Score=62.79 Aligned_cols=32 Identities=31% Similarity=0.595 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhCCceee
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEYCLCHLA 62 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~ 62 (195)
++..++|.||||+||||+++.|+..++..++.
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 541 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 45579999999999999999999998765544
No 299
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.74 E-value=0.0014 Score=53.29 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
..++.+|+|+|++|+||||+...|+..+
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4566799999999999999999998654
No 300
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.73 E-value=0.00048 Score=55.40 Aligned_cols=27 Identities=41% Similarity=0.669 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+++.+++|+|++||||||+.+.|+.-+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 456689999999999999999998755
No 301
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.72 E-value=0.00095 Score=55.15 Aligned_cols=26 Identities=38% Similarity=0.592 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.++-+++|.||+||||||+.+.|+--
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcC
Confidence 34568999999999999999999864
No 302
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.71 E-value=0.00094 Score=49.37 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
..|+|.|++||||||+.+.|+..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999874
No 303
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.70 E-value=0.00084 Score=52.80 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
+.+++|.|+.||||||+.+.|+--
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 678999999999999999999753
No 304
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.70 E-value=0.00099 Score=48.37 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
++..|+|.|.+|+||||+..+|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 305
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.70 E-value=0.00064 Score=55.68 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++-+++|.||+||||||+.+.|+--.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 456799999999999999999998643
No 306
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.70 E-value=0.0012 Score=55.33 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
.+.-+|+|+||.||||||+.+.|...++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3456899999999999999999988763
No 307
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.69 E-value=0.0013 Score=47.44 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
.++..|+|.|.+|+||||+...|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456899999999999999999976
No 308
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.69 E-value=0.00098 Score=47.90 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChhHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~ 54 (195)
..|+|.|++|+||||+..+|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999976
No 309
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.0013 Score=48.15 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.+...|+|+|++||||||+...|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34458999999999999999999874
No 310
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.68 E-value=0.001 Score=55.28 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
.++-+++|.||+||||||+.+.|+-
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCChHHHHHHHHhC
Confidence 4566899999999999999999986
No 311
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.68 E-value=0.00083 Score=54.95 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+++.++.|+|++||||||++..|+...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999865
No 312
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.00089 Score=56.84 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|+.||||||+++.|+.-+
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 466799999999999999999998754
No 313
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.66 E-value=0.0012 Score=46.62 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
+.|+|.|.+|+||||+...|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999874
No 314
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.65 E-value=0.0012 Score=48.95 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
..|+|.|++||||||+.+.|+..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 315
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.64 E-value=0.0012 Score=46.82 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChhHHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
..|+|.|.+|+||||+...|...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999998753
No 316
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.64 E-value=0.0015 Score=46.67 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=21.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
++...|+|.|.+|+||||+...|..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999999975
No 317
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.64 E-value=0.0011 Score=48.35 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
+..|+|.|.+|+||||+...|...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 318
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.63 E-value=0.0012 Score=46.96 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|.|.+|+||||+...|...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999999863
No 319
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.63 E-value=0.0011 Score=55.87 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+|+|+|++|+||||++..|+..+
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999876
No 320
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.61 E-value=0.0026 Score=50.84 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+.+|+++|++|+||||++..|+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998766
No 321
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.61 E-value=0.0012 Score=53.51 Aligned_cols=32 Identities=16% Similarity=0.092 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh--CCceeeh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY--CLCHLAT 63 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~--~~~~i~~ 63 (195)
+.+++|.|+||+||||++..++... .+.+++.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 4578999999999999999998753 3456666
No 322
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.61 E-value=0.0017 Score=50.16 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
..++.++++.|.+|+||||++..|+..+
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3566789999999999999999998654
No 323
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.59 E-value=0.0017 Score=48.74 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+...|+|+|++|+||||+...|....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998753
No 324
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.59 E-value=0.0011 Score=52.26 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
..++|+|++||||||+.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998755
No 325
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.59 E-value=0.00064 Score=55.77 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.++-+++|.||+||||||+.+.|+--
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45679999999999999999999863
No 326
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.59 E-value=0.0019 Score=48.30 Aligned_cols=27 Identities=22% Similarity=0.108 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+.++++++|++||||||.+-.++.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 446799999999999999998888877
No 327
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.59 E-value=0.0012 Score=46.60 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChhHHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
..|+|.|.+|+||||+...|...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999764
No 328
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.59 E-value=0.0018 Score=46.88 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
+++..|+|.|.+|+||||+...|..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 5667899999999999999998873
No 329
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.57 E-value=0.0013 Score=54.07 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=27.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh---C--Cceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~---~--~~~i~~ 63 (195)
.++.++.|.|+|||||||++..++... + +.+|+.
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~ 97 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA 97 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 356699999999999999999998764 2 446665
No 330
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.56 E-value=0.013 Score=47.68 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=27.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh---C--Cceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY---C--LCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~---~--~~~i~~ 63 (195)
.++-+++|.|.||+||||++..++... | +.+++.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 455699999999999999999988764 2 446665
No 331
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.55 E-value=0.0012 Score=47.95 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
+...|+|.|.+|+||||+...|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999863
No 332
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.54 E-value=0.00075 Score=50.31 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=22.0
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
..++.+|+|.|++||||||+.+.|+.
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34566899999999999999998864
No 333
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.54 E-value=0.0015 Score=46.26 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|.|.+|+||||+...|...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999763
No 334
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.53 E-value=0.0015 Score=47.68 Aligned_cols=24 Identities=29% Similarity=0.236 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
+.+|+|+.||||||+.++|.--++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 899999999999999999977553
No 335
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.53 E-value=0.0015 Score=47.05 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|+|.+|+||||+...|...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999998763
No 336
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.52 E-value=0.0018 Score=58.12 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=24.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCcee
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLCHL 61 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~~i 61 (195)
.++|+|+||+|||++|+.|++.++..++
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~ 517 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEE
Confidence 6999999999999999999999875544
No 337
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.51 E-value=0.0016 Score=49.69 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
+++.+++|.|+||+|||++|-.++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4566999999999999999988764
No 338
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.51 E-value=0.0016 Score=46.19 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~ 54 (195)
..|+|.|.+|+||||+...|..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999976
No 339
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.50 E-value=0.0021 Score=47.07 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
....|+|+|.+|+||||+...|...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999875
No 340
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.50 E-value=0.0018 Score=46.67 Aligned_cols=25 Identities=20% Similarity=0.419 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
+...|+|.|.+|+||||+...|...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3457999999999999999998763
No 341
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.50 E-value=0.0015 Score=46.56 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
...|+|.|.+|+||||+...|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999976
No 342
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.50 E-value=0.0016 Score=46.83 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
+...|+|+|.+|+||||+...|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999864
No 343
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.49 E-value=0.0017 Score=46.60 Aligned_cols=24 Identities=29% Similarity=0.601 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|.|.+|+||||+..+|...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 357999999999999999998753
No 344
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.48 E-value=0.0018 Score=55.53 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+|+|+|.+||||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456689999999999999999999765
No 345
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.48 E-value=0.0007 Score=58.08 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
.-++|.|+||+|||++|+.|++.++
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 3699999999999999999999774
No 346
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.48 E-value=0.0013 Score=53.04 Aligned_cols=24 Identities=33% Similarity=0.274 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
-++++|+|+.||||||+.+.|...
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 358999999999999999999853
No 347
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.46 E-value=0.0011 Score=53.77 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+.+++|+|++||||||+.+.|+..+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998866
No 348
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.46 E-value=0.0015 Score=47.83 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~ 54 (195)
..|+|.|.+|+||||+...|+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999976
No 349
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.45 E-value=0.0027 Score=46.31 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.....|+|.|.+|+||||+..+|...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45568999999999999999998764
No 350
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.44 E-value=0.0015 Score=46.43 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChhHHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
..|+|.|.+|+||||+...|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998753
No 351
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.44 E-value=0.0022 Score=51.21 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
++.+|+|+|++|+||||++..|+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999998766
No 352
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.43 E-value=0.0017 Score=53.07 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=26.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh-----CCceeeh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLAT 63 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~-----~~~~i~~ 63 (195)
++.++.|.|+|||||||++..++... .+.+++.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 56689999999999999999988654 3556665
No 353
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.42 E-value=0.0044 Score=49.62 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHHhC--Cceeeh
Q 029307 15 VDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDEYC--LCHLAT 63 (195)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~~~--~~~i~~ 63 (195)
.+.++.+.+ +. . .+++|.|++|+||||+++.+++..+ ..+++.
T Consensus 19 ~~el~~L~~-l~--~---~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~ 63 (357)
T 2fna_A 19 EKEIEKLKG-LR--A---PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL 63 (357)
T ss_dssp HHHHHHHHH-TC--S---SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred HHHHHHHHH-hc--C---CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence 445555555 33 2 4899999999999999999998764 345554
No 354
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.42 E-value=0.0018 Score=47.45 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|+|.+|+||||+...|...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457999999999999999998863
No 355
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.41 E-value=0.0023 Score=46.87 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
....|+|+|.+|+||||+...|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999763
No 356
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.39 E-value=0.0019 Score=53.88 Aligned_cols=25 Identities=16% Similarity=0.116 Sum_probs=21.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
.+..++.|+|+|||||||++..|+-
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3456899999999999999998763
No 357
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.38 E-value=0.00055 Score=50.93 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=22.0
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
.++...|+|.|.+|+||||+...|..
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 34566899999999999999988864
No 358
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.36 E-value=0.0022 Score=45.55 Aligned_cols=22 Identities=32% Similarity=0.675 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~ 54 (195)
..|+|.|.+|+||||+...|..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 4799999999999999998864
No 359
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.36 E-value=0.002 Score=53.96 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
+.+++|.|++||||||+.+.|+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhC
Confidence 44899999999999999999987
No 360
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.36 E-value=0.0024 Score=46.62 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|.|.+|+||||+...|...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999765
No 361
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.36 E-value=0.002 Score=45.98 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|.|.+|+||||+...|...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999998864
No 362
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.36 E-value=0.0027 Score=51.73 Aligned_cols=26 Identities=15% Similarity=-0.022 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
+++.++.|+|+|||||||++..++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45669999999999999999999886
No 363
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.35 E-value=0.0022 Score=47.23 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=20.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
+...|+|.|.+|+||||+..+|..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999986
No 364
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.35 E-value=0.0023 Score=52.60 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+.+++|.|++||||||+.+.|+...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 4589999999999999999998643
No 365
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.34 E-value=0.0027 Score=46.73 Aligned_cols=26 Identities=19% Similarity=0.334 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.+...|+|.|.+|+||||+...|...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44568999999999999999999864
No 366
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.34 E-value=0.0027 Score=53.45 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+|+|+|++|+||||++..|+..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999998665
No 367
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.34 E-value=0.0021 Score=45.72 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~ 54 (195)
..|+|+|.+|+||||+...|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4699999999999999999875
No 368
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.34 E-value=0.0016 Score=56.07 Aligned_cols=26 Identities=31% Similarity=0.197 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+.+|+|+|++||||||+.+.|+..+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34579999999999999999998765
No 369
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.34 E-value=0.0024 Score=48.49 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=24.3
Q ss_pred HhcccCCCCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 23 RRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 23 ~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
++++....+...|+|+|.+|+||||+...|...
T Consensus 20 ~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 20 QGLPSINPHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp --CCSCCTTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred ccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344433345678999999999999999998763
No 370
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.34 E-value=0.0018 Score=47.26 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
+..|+|+|.+|+||||+...|...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999999864
No 371
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.33 E-value=0.0021 Score=47.13 Aligned_cols=25 Identities=40% Similarity=0.420 Sum_probs=21.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
++...|+|+|.+|+||||+...|..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHc
Confidence 4456799999999999999999985
No 372
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.33 E-value=0.0021 Score=46.86 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|.|.+|+||||+...|...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999864
No 373
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.33 E-value=0.0026 Score=46.60 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=21.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.+...|+|.|.+|+||||+...+...
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34458999999999999999887763
No 374
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.32 E-value=0.0025 Score=45.42 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~ 54 (195)
..|+|.|.+|+||||+...|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999999864
No 375
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.32 E-value=0.003 Score=45.58 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=21.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.+...|+|.|.+|+||||+...+...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999998763
No 376
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.32 E-value=0.0027 Score=46.31 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.7
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
.++...|+|.|.+|+||||+..+|..
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 34567899999999999999999985
No 377
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.31 E-value=0.0027 Score=45.99 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
+...|+|+|.+|+||||+...|...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999864
No 378
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.31 E-value=0.0027 Score=45.64 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChhHHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
..|+|.|.+|+||||+...|...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999998753
No 379
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.31 E-value=0.0025 Score=50.96 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
..+++|.|++||||||+.+.|. ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 4589999999999999999998 54
No 380
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.31 E-value=0.002 Score=45.89 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
..|+|.|.+|+||||+...|...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999998764
No 381
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.31 E-value=0.0015 Score=57.15 Aligned_cols=25 Identities=24% Similarity=0.575 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
..++|.|+||+||||+++.|+..++
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4799999999999999999999774
No 382
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.30 E-value=0.0042 Score=53.80 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 14 SVDLMTELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
..+.++.+.+........+.+|+|+|++|+||||++..++.
T Consensus 129 R~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 129 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred cHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 34455555554432233456899999999999999998853
No 383
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.30 E-value=0.0053 Score=51.85 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++|.|++||||||++..+.+.+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998876
No 384
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.29 E-value=0.0025 Score=52.26 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh-----CCceeeh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLAT 63 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~-----~~~~i~~ 63 (195)
++.+++|.|+||+||||+|..++... .+.+|+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 45689999999999999999988754 3566776
No 385
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.29 E-value=0.0016 Score=46.31 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
...|+|.|.+|+||||+...|..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999886
No 386
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.29 E-value=0.0022 Score=46.60 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
...|+|+|.+|+||||+...|..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999986
No 387
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.29 E-value=0.0023 Score=53.73 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=21.9
Q ss_pred CCCcE--EEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKR--LILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~i--I~i~G~pGsGKSTla~~L~~~ 55 (195)
+++.+ ++|+|++||||||+.+.|+..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 45567 999999999999999999764
No 388
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.28 E-value=0.0028 Score=46.09 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
++...|+|.|.+|+||||+...|...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999998753
No 389
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.27 E-value=0.0025 Score=49.91 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
..|+|.|++||||||+...|...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999764
No 390
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.27 E-value=0.0023 Score=46.15 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|.|.+|+||||+...|...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 347999999999999999998763
No 391
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.27 E-value=0.0027 Score=45.95 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|+|.+|+||||+...|...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 357999999999999999999863
No 392
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.26 E-value=0.0025 Score=51.43 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+++.++.|.|+|||||||++..++...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 345689999999999999999998764
No 393
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.25 E-value=0.0024 Score=47.26 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.+...|+|+|.+|+||||+...|...
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 34567999999999999999999864
No 394
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.25 E-value=0.0031 Score=46.58 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=21.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.+...|+|+|.+|+||||+...|...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34568999999999999999998763
No 395
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.25 E-value=0.003 Score=46.60 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|+|.+|+||||+...|...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999998753
No 396
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.24 E-value=0.003 Score=47.16 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
+...|+|.|.+|+||||+..+|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 397
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.24 E-value=0.0022 Score=46.03 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~ 54 (195)
..|+|+|.+|+||||+...|..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999975
No 398
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.24 E-value=0.0028 Score=46.37 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
+...|+|+|.+|+||||+...|..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 345799999999999999999875
No 399
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.23 E-value=0.0025 Score=45.89 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|.|.+|+||||+...|...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457999999999999999998763
No 400
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.23 E-value=0.0029 Score=46.20 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
..|+|.|.+|+||||+.+.|...+.
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4799999999999999988877653
No 401
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.23 E-value=0.0025 Score=55.17 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+.++.+++|.|+.||||||+.+.|+-.+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3456799999999999999999998744
No 402
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.22 E-value=0.0034 Score=56.37 Aligned_cols=32 Identities=19% Similarity=0.468 Sum_probs=25.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh---C--CceeehHH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEY---C--LCHLATGD 65 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~---~--~~~i~~d~ 65 (195)
.++|+||||+|||++|+.|++.+ + +..++..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSE 559 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechh
Confidence 59999999999999999999986 2 44555543
No 403
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.22 E-value=0.0036 Score=50.32 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=26.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh-----CCceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~-----~~~~i~~ 63 (195)
.++.+++|+|.||+||||++..++... .+.+++.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 455689999999999999999988654 2445654
No 404
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.22 E-value=0.0028 Score=55.28 Aligned_cols=27 Identities=37% Similarity=0.545 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+++.+++|+|++||||||+.+.|+.-+
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456689999999999999999998755
No 405
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.20 E-value=0.0029 Score=46.78 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|+|.+|+||||+...|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457999999999999999998764
No 406
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.20 E-value=0.0032 Score=46.42 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=22.3
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
.++...|+|.|.+|+||||+...|..
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHh
Confidence 34567899999999999999999864
No 407
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.20 E-value=0.0026 Score=47.72 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
+...|+|+|.+|+||||+...|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 446799999999999999999875
No 408
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.20 E-value=0.002 Score=46.63 Aligned_cols=23 Identities=13% Similarity=0.343 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
...|+|.|.+|+||||+...|..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45799999999999999999984
No 409
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.19 E-value=0.003 Score=45.38 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
...|+|.|.+|+||||+...|..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999865
No 410
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.18 E-value=0.0038 Score=44.22 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.|+|.|.+|+||||+...|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999763
No 411
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.18 E-value=0.0038 Score=45.74 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
....|+|.|.+|+||||+...|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 346899999999999999999976
No 412
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.18 E-value=0.0023 Score=46.85 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=21.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+...|+|+|.+|+||||+...|....
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999987643
No 413
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.17 E-value=0.0032 Score=54.49 Aligned_cols=27 Identities=33% Similarity=0.537 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++-+++|+|+.||||||+.+.|+-.+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355689999999999999999998644
No 414
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.17 E-value=0.0031 Score=46.21 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|+|.+|+||||+...|...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 457999999999999999988763
No 415
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.17 E-value=0.0035 Score=52.68 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
++.+|+|+|++||||||++..|+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999876
No 416
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.17 E-value=0.0028 Score=48.48 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=21.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.....|+|+|.+|+||||+...|...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 34568999999999999999998763
No 417
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.17 E-value=0.0028 Score=52.12 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.6
Q ss_pred CCcEEEE--EcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLIL--VGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i--~G~pGsGKSTla~~L~~~~ 56 (195)
.+..++| +|++|+||||+++.+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 4567888 9999999999999998865
No 418
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.16 E-value=0.0026 Score=46.20 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=21.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.+...|+|+|.+|+||||+...|...
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999999863
No 419
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.16 E-value=0.0036 Score=44.89 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|+|.+|+||||+...|...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999864
No 420
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.16 E-value=0.0025 Score=47.08 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=21.8
Q ss_pred CCCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 29 SKPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 29 ~~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+.+...|+|.|.+|+||||+.+.+...+
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence 3445689999999999999999887754
No 421
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.15 E-value=0.0025 Score=55.57 Aligned_cols=27 Identities=41% Similarity=0.604 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+++.+++|+|++||||||+.+.|+.-+
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 456689999999999999999998755
No 422
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.14 E-value=0.003 Score=45.65 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
...|+|.|.+|+||||+...|..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999875
No 423
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.14 E-value=0.0031 Score=50.65 Aligned_cols=26 Identities=19% Similarity=0.058 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
+++.++.|+|+|||||||++..++..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999864
No 424
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.13 E-value=0.003 Score=45.83 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|.|.+|+||||+...|...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999998753
No 425
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.10 E-value=0.0033 Score=45.71 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.|+|.|.+|+||||+...|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999998763
No 426
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.10 E-value=0.0033 Score=46.62 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
++..|+|.|.+|+||||+..+|..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 445799999999999999999864
No 427
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.09 E-value=0.0058 Score=47.56 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=26.4
Q ss_pred HHHHhcccCCCCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 20 ELLRRMKCASKPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 20 ~~~~~~~~~~~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
+..+++.....+...|+|.|.+|+||||+...|...
T Consensus 24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 333443333345568999999999999999999864
No 428
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.09 E-value=0.0035 Score=50.06 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
..+++|.|++||||||+.+.|+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred CCeEEEECCCCCcHHHHHHHhccc
Confidence 358999999999999999998753
No 429
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.09 E-value=0.0028 Score=54.51 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPII 52 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L 52 (195)
.++-+++|.|++||||||+++.+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHH
Confidence 35679999999999999999984
No 430
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.09 E-value=0.0037 Score=48.40 Aligned_cols=26 Identities=35% Similarity=0.615 Sum_probs=21.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.+...|+|+|.+|+||||+...|...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999753
No 431
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.08 E-value=0.0032 Score=46.22 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
+...|+|+|.+|+||||+...|...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3457999999999999999999874
No 432
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.08 E-value=0.0045 Score=44.23 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+.+.+|+|+.||||||+.++|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999999987543
No 433
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.07 E-value=0.003 Score=45.57 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
+...|+|.|.+|+||||+..+|...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999863
No 434
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.06 E-value=0.0027 Score=55.53 Aligned_cols=27 Identities=37% Similarity=0.549 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+++.+++|.|++||||||+.+.|+.-+
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 456689999999999999999998755
No 435
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.04 E-value=0.0035 Score=45.96 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
.....|+|+|.+|+||||+...|..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3445899999999999999999875
No 436
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.04 E-value=0.0039 Score=50.93 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
.++.++.|.|++||||||+.+.|+....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567999999999999999999999764
No 437
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.03 E-value=0.0044 Score=45.28 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|+|.+|+||||+...|...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999999863
No 438
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.01 E-value=0.0045 Score=45.60 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=20.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
.+...|+|+|.+|+||||+...|..
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 3456899999999999999999875
No 439
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.01 E-value=0.005 Score=51.98 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++-+++|.|+||+||||++..++...
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999987754
No 440
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.01 E-value=0.0045 Score=45.36 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
..|+|+|.+|+||||+...|...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 479999999999999999988643
No 441
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.00 E-value=0.0031 Score=55.18 Aligned_cols=27 Identities=44% Similarity=0.763 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+++.+++|+|++||||||+.+.|+.-+
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 456789999999999999999998755
No 442
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.0042 Score=54.49 Aligned_cols=27 Identities=37% Similarity=0.534 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|+.||||||+.+.|+-.+
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 456799999999999999999998644
No 443
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.00 E-value=0.0049 Score=45.75 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
....|+|+|.+|+||||+...|..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999875
No 444
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.00 E-value=0.0035 Score=45.77 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|+|.+|+||||+...|...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999764
No 445
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.99 E-value=0.0033 Score=46.15 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|+|.+|+||||+...|...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357999999999999999998763
No 446
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.99 E-value=0.0039 Score=45.66 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChhHHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
..|+|+|.+|+||||+...|...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999998763
No 447
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.99 E-value=0.0048 Score=53.78 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
..+++|+|+||+||||++..+...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999988755
No 448
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.97 E-value=0.0049 Score=45.00 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
..|+|+|.+|+||||+...|...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999998763
No 449
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.97 E-value=0.004 Score=46.55 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
....|+|.|.+|+||||+...|...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999874
No 450
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.97 E-value=0.004 Score=53.11 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.+++|+|++||||||+.+.|+--+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 689999999999999999998754
No 451
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.97 E-value=0.0041 Score=56.61 Aligned_cols=23 Identities=22% Similarity=0.540 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++|+|+||+|||++|+.|++.+
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999987
No 452
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.96 E-value=0.007 Score=47.30 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.+...|+|+|.+|+||||+...|...
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999998763
No 453
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.95 E-value=0.0042 Score=52.35 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
.++-++.|.|++||||||+.+.|+....
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4567999999999999999999998763
No 454
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.95 E-value=0.0041 Score=46.10 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
...|+|+|.+|+||||+...|..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 45799999999999999999875
No 455
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.93 E-value=0.0051 Score=49.58 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=25.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
+.-++|+|++|+||||++..|.++ |...++-
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~d 174 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLVAD 174 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEEES
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCceecC
Confidence 456999999999999999999885 7766654
No 456
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.91 E-value=0.0039 Score=53.91 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
++-+++|.|+.||||||+.+.|+--+
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998643
No 457
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.89 E-value=0.005 Score=45.43 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChhHHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
..|+|+|.+|+||||+...|...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998763
No 458
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.89 E-value=0.0076 Score=45.87 Aligned_cols=27 Identities=15% Similarity=-0.018 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+.+++|++||||||.+-.++..+
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 456799999999999999988888776
No 459
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.87 E-value=0.005 Score=53.24 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46689999999999999999998643
No 460
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.87 E-value=0.004 Score=48.58 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChhHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
...|+|.|.||+||||+...|..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 45799999999999999999976
No 461
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.86 E-value=0.0037 Score=45.61 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=21.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
++...|+|.|.+|+||||+...|..
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 4567899999999999999998854
No 462
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.86 E-value=0.0025 Score=55.49 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+++.+++|+|++||||||+.+.|..-+
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 456689999999999999999987755
No 463
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.85 E-value=0.0038 Score=46.19 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~ 54 (195)
..|+|.|.+|+||||+..+|..
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999853
No 464
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.81 E-value=0.0057 Score=45.59 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|+|.+|+||||+..+|...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 357999999999999999998763
No 465
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.79 E-value=0.0055 Score=50.46 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=27.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh-----CCceeehH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY-----CLCHLATG 64 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~-----~~~~i~~d 64 (195)
+++.++.|.|+||+||||+|..++... .+.+|+.+
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 345689999999999999999988754 35677763
No 466
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.79 E-value=0.0059 Score=45.22 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~ 54 (195)
..|+|.|.+|+||||+...|..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999875
No 467
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.78 E-value=0.0061 Score=48.00 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|.|.||+||||+..+|...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 357999999999999999999863
No 468
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.78 E-value=0.005 Score=54.04 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++-+++|.|+.||||||+.+.|+-.+
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 455699999999999999999998644
No 469
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.77 E-value=0.0063 Score=48.96 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhCCceeeh
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYCLCHLAT 63 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~~~~i~~ 63 (195)
+.-|+|+|++|+||||+|-.|.+ .|+..++-
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv~D 177 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFVGD 177 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeC
Confidence 34589999999999999999877 57766664
No 470
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.77 E-value=0.0053 Score=52.80 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++.+++|.|++||||||+++.++...
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345699999999999999999988654
No 471
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.77 E-value=0.0058 Score=53.62 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
++-+++|.|+.||||||+.+.|+-.
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4668999999999999999999864
No 472
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.76 E-value=0.0056 Score=47.34 Aligned_cols=25 Identities=40% Similarity=0.652 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
++..|+|+|.+|+||||+...|...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999998753
No 473
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.76 E-value=0.012 Score=46.61 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
..+.|+|+|.+|+||||+...|...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 3458999999999999999999763
No 474
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.75 E-value=0.0061 Score=45.33 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|.|.+|+||||+...|...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 357999999999999999999863
No 475
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.75 E-value=0.0019 Score=51.92 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
++.+++|.|++||||||+.+.|...
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHhccc
Confidence 3568999999999999999998653
No 476
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.74 E-value=0.0063 Score=50.55 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
..+..|+|.|+||+||||+.+.|..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4566899999999999999999988
No 477
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.72 E-value=0.0037 Score=54.59 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
+++.+++|+|++||||||+.+.|+.-+
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456689999999999999999998755
No 478
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.72 E-value=0.011 Score=46.58 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
..+.|+|+|.+|+||||+...|...
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 3458999999999999999999764
No 479
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.72 E-value=0.0075 Score=45.27 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
....|+|+|.+|+||||+..+|...
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3457999999999999999998763
No 480
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.72 E-value=0.0062 Score=49.27 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=21.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
.++ ++.|.|+|||||||++-.++...
T Consensus 27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred cCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 345 79999999999999988876544
No 481
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.71 E-value=0.0059 Score=47.57 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.|+|+|.|||||||+...|...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999764
No 482
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.69 E-value=0.0074 Score=44.86 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 31 PDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 31 ~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
....|+|.|.+|+||||+...|...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999998853
No 483
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.68 E-value=0.0064 Score=48.50 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|.|.||+||||+...|...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 347999999999999999999863
No 484
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.68 E-value=0.0085 Score=52.56 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 029307 34 RLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~ 55 (195)
.|+|+|++||||||+.+.|+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC
T ss_pred eEEEECCCCChHHHHHHHHhCC
Confidence 5999999999999999999763
No 485
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.68 E-value=0.01 Score=45.57 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHh
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDEY 56 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~~ 56 (195)
..|++.|++|+||||++-.++..+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 579999999999999988777655
No 486
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.007 Score=53.09 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
-+++|.|+.||||||+.+.|+--
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhcC
Confidence 46899999999999999999864
No 487
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.66 E-value=0.007 Score=44.76 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|+|.+|+||||+...|...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999863
No 488
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.66 E-value=0.0071 Score=47.54 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...|+|+|.+||||||+...|...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999764
No 489
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.65 E-value=0.0079 Score=50.60 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=26.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHh----C--Cceeeh
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDEY----C--LCHLAT 63 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~~----~--~~~i~~ 63 (195)
.++-+++|+|+||+||||++..++... | +.+++.
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 345699999999999999999887754 2 445655
No 490
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.65 E-value=0.007 Score=44.45 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~ 54 (195)
..|+|.|.+|+||||+...|..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999999865
No 491
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.64 E-value=0.0075 Score=44.46 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
..|+|.|.+|+||||+..++...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999853
No 492
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.61 E-value=0.0074 Score=44.73 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
...|+|.|.+|+||||+...|..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhh
Confidence 35799999999999999999875
No 493
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.61 E-value=0.0076 Score=44.97 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHH
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~ 54 (195)
...|+|+|.+|+||||+...|..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 35799999999999999999875
No 494
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.61 E-value=0.0044 Score=44.86 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=10.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~ 54 (195)
..|+|+|.+|+||||+...|..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999998875
No 495
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.55 E-value=0.0051 Score=53.82 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=23.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCc
Q 029307 34 RLILVGPPGSGKGTQSPIIKDEYCLC 59 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~~~~~~~ 59 (195)
.|+|.|+||+|||++|+.+++.++..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~ 354 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRA 354 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCE
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCc
Confidence 59999999999999999999977533
No 496
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.55 E-value=0.0056 Score=48.89 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKD 54 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~ 54 (195)
..|+|.|++|+||||+.+.|..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999764
No 497
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.55 E-value=0.0081 Score=43.92 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHH
Q 029307 33 KRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 33 ~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
..|+|+|.+|+||||+...|...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999864
No 498
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.51 E-value=0.0097 Score=44.64 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHhC
Q 029307 32 DKRLILVGPPGSGKGTQSPIIKDEYC 57 (195)
Q Consensus 32 ~~iI~i~G~pGsGKSTla~~L~~~~~ 57 (195)
+.+.+|+|+.||||||+..+|.-.++
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45899999999999999999876553
No 499
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.50 E-value=0.008 Score=49.32 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHHHHHH
Q 029307 34 RLILVGPPGSGKGTQSPIIK 53 (195)
Q Consensus 34 iI~i~G~pGsGKSTla~~L~ 53 (195)
+.+|+|+.||||||+...|+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 78899999999999999987
No 500
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.50 E-value=0.0041 Score=46.64 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 029307 30 KPDKRLILVGPPGSGKGTQSPIIKDE 55 (195)
Q Consensus 30 ~~~~iI~i~G~pGsGKSTla~~L~~~ 55 (195)
...+.|+|+|.+|+||||+...|...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34568999999999999999998764
Done!