BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029308
MLGQDSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGSISDYMFEESV
CLLLRATWFKPLIVEDHVVVQDDLEDDYSYEDEEDDLDEVYFRSSSSLRIGNRRWGDNGY
VRAGRQEARPVCRPNSQDVGASSSREPKKKEVAKVTTGRRAKRALKREAADKAAASKHQQ
HLARLGRNLEARCSQ

High Scoring Gene Products

Symbol, full name Information P value
AT5G19430 protein from Arabidopsis thaliana 4.9e-37
AT5G12310 protein from Arabidopsis thaliana 7.2e-36

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029308
        (195 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2150310 - symbol:AT5G19430 species:3702 "Arabi...   398  4.9e-37   1
TAIR|locus:505006599 - symbol:AT5G12310 species:3702 "Ara...   387  7.2e-36   1


>TAIR|locus:2150310 [details] [associations]
            symbol:AT5G19430 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
            evidence=IEA;ISS] [GO:0048573 "photoperiodism, flowering"
            evidence=RCA] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
            SMART:SM00184 Prosite:PS00518 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270
            Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907 HSSP:P38398
            eggNOG:NOG265787 HOGENOM:HOG000151161 ProtClustDB:CLSN2689629
            EMBL:AF361602 EMBL:AY058228 IPI:IPI00525131 RefSeq:NP_568374.1
            UniGene:At.19112 ProteinModelPortal:Q9ASY3 SMR:Q9ASY3 IntAct:Q9ASY3
            EnsemblPlants:AT5G19430.1 GeneID:832063 KEGG:ath:AT5G19430
            TAIR:At5g19430 InParanoid:Q9ASY3 OMA:CPQCKHP PhylomeDB:Q9ASY3
            Genevestigator:Q9ASY3 Uniprot:Q9ASY3
        Length = 255

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 89/184 (48%), Positives = 104/184 (56%)

Query:    17 TCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGSISDYMFEESVCLLLRATWFKPL-IVE 75
             TCILRWAS   +PTCPQCKHPF+FL VHR+LDGSI D++FEESVCLLLRA+WF PL +VE
Sbjct:    71 TCILRWASCKESPTCPQCKHPFDFLSVHRALDGSIEDFLFEESVCLLLRASWFVPLDVVE 130

Query:    76 DHVVVQXXXXXXXXXXXXXXXXXXV--YFRSSSSLRIGNRRWGDNGYVRAGRQEARPVCR 133
                                     +  ++   SSLRIGNRRWG NG+VR+GRQEARPV R
Sbjct:   131 QASYSHGYHDDFDIPYDYEDEDDDLDEFYLHGSSLRIGNRRWGGNGFVRSGRQEARPVQR 190

Query:   134 -----PNSQDVGASSSREPKKKEVAKV-TTGXXXXXX----XXXXXXXXXXXXXHQQHLA 183
                   +S     SSS EPK K+V    TTG                       H+ HL 
Sbjct:   191 YSGSGSSSSSSSGSSSSEPKDKQVKTTNTTGRRAKRAMKREAANKAAEVTAAAKHEAHLV 250

Query:   184 RLGR 187
             RLGR
Sbjct:   251 RLGR 254


>TAIR|locus:505006599 [details] [associations]
            symbol:AT5G12310 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
            evidence=IEA;ISS] [GO:0007062 "sister chromatid cohesion"
            evidence=RCA] [GO:0007131 "reciprocal meiotic recombination"
            evidence=RCA] [GO:0033044 "regulation of chromosome organization"
            evidence=RCA] [GO:0042138 "meiotic DNA double-strand break
            formation" evidence=RCA] [GO:0045132 "meiotic chromosome
            segregation" evidence=RCA] InterPro:IPR001841 Pfam:PF13639
            PROSITE:PS50089 SMART:SM00184 Prosite:PS00518 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270
            Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AL592312
            InterPro:IPR017907 HSSP:P28990 eggNOG:NOG265787 EMBL:AY116954
            EMBL:AK117718 IPI:IPI00535079 RefSeq:NP_568264.1 UniGene:At.28632
            ProteinModelPortal:Q94CL1 SMR:Q94CL1 EnsemblPlants:AT5G12310.1
            GeneID:831106 KEGG:ath:AT5G12310 TAIR:At5g12310
            HOGENOM:HOG000151161 InParanoid:Q94CL1 OMA:EKPTCPQ PhylomeDB:Q94CL1
            ProtClustDB:CLSN2689629 ArrayExpress:Q94CL1 Genevestigator:Q94CL1
            Uniprot:Q94CL1
        Length = 254

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 92/202 (45%), Positives = 113/202 (55%)

Query:     4 QDSSPGNGSCKSA---TCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGSISDYMFEESV 60
             Q+++   G C+ A   TCILRWASY   PTCPQCK PF+FL+VHR+LDGS+ D+MFEESV
Sbjct:    53 QETAMVKG-CEHAYCVTCILRWASYKEKPTCPQCKLPFDFLNVHRALDGSVEDFMFEESV 111

Query:    61 CLLLRATWFKPL-IVE-----DHVVVQXXXXXXXXXXXXXXXXXXVYFRSSSSLRIGNRR 114
             CLLLRA+WF+PL  VE     D+                       ++   SSLR+GNRR
Sbjct:   112 CLLLRASWFQPLEAVERVSDNDNFNYDFDIPPEYEEEDEDDDDLDEFYMQGSSLRLGNRR 171

Query:   115 WGDNGYVRAGRQEARPVCRPN--SQDVGA----SSSREPKKKEVAKVT---TGXXXXXXX 165
             WGDNG+VRAGRQEARPV   N   Q  G+    SSS EPK+K  + +T            
Sbjct:   172 WGDNGFVRAGRQEARPVQHKNRGGQASGSEPASSSSCEPKEKTSSAITGRRAKRAMKREA 231

Query:   166 XXXXXXXXXXXXHQQHLARLGR 187
                         H+  L RLGR
Sbjct:   232 ANKAAEAVAAAKHEALLVRLGR 253


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.133   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      195       158   0.00085  106 3  11 22  0.48    31
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  165 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.37u 0.09s 13.46t   Elapsed:  00:00:01
  Total cpu time:  13.37u 0.09s 13.46t   Elapsed:  00:00:01
  Start:  Fri May 10 14:39:47 2013   End:  Fri May 10 14:39:48 2013

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