BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029308
         (195 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LQL2|PTR14_ARATH Nitrate transporter 1.5 OS=Arabidopsis thaliana GN=NRT1.5 PE=1 SV=2
          Length = 614

 Score = 32.0 bits (71), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 66  ATWFKPLIVEDHVVVQDDLEDDYSYEDEED 95
           A W+KP+ +E    +QD  +DDY  E EE+
Sbjct: 578 AKWYKPIQLEGKDEMQDMSDDDYDTESEEE 607


>sp|Q9Y7X2|YOP2_SCHPO N-terminal acetyltransferase A complex subunit-like protein C418.02
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=SPBC418.02 PE=3 SV=1
          Length = 695

 Score = 31.6 bits (70), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 23/30 (76%)

Query: 162 KRALKREAADKAAASKHQQHLARLGRNLEA 191
           KR+++ + +D+A ASK+ ++L R+ RN EA
Sbjct: 423 KRSVELDKSDRALASKYAKYLIRMDRNEEA 452


>sp|P84445|ICP0_EHV1V E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
          V592) GN=ICP0 PE=3 SV=1
          Length = 532

 Score = 30.8 bits (68), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 3/28 (10%)

Query: 17 TCILRWASYVRNPTCPQCKHPFEFLHVH 44
           CI RW    +NPTCP CK P E + VH
Sbjct: 31 VCITRWIR--QNPTCPLCKVPVESV-VH 55


>sp|P28990|ICP0_EHV1B E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
          Ab4p) GN=63 PE=1 SV=1
          Length = 532

 Score = 30.8 bits (68), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 3/28 (10%)

Query: 17 TCILRWASYVRNPTCPQCKHPFEFLHVH 44
           CI RW    +NPTCP CK P E + VH
Sbjct: 31 VCITRWIR--QNPTCPLCKVPVESV-VH 55


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.131    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,328,004
Number of Sequences: 539616
Number of extensions: 2906814
Number of successful extensions: 12759
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 12674
Number of HSP's gapped (non-prelim): 111
length of query: 195
length of database: 191,569,459
effective HSP length: 111
effective length of query: 84
effective length of database: 131,672,083
effective search space: 11060454972
effective search space used: 11060454972
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)