Query 029308
Match_columns 195
No_of_seqs 135 out of 398
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 17:40:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029308.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029308hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ztg_A E3 ubiquitin-protein li 99.4 7.6E-14 2.6E-18 99.0 2.4 58 2-59 23-84 (92)
2 1t1h_A Gspef-atpub14, armadill 99.4 1E-13 3.4E-18 95.7 2.0 57 1-58 17-75 (78)
3 3fl2_A E3 ubiquitin-protein li 99.3 3.7E-13 1.3E-17 100.8 2.6 55 2-57 62-119 (124)
4 2egp_A Tripartite motif-contai 99.3 7.1E-13 2.4E-17 90.9 3.2 51 2-52 22-79 (79)
5 2ecw_A Tripartite motif-contai 99.3 1.6E-12 5.5E-17 89.3 3.7 51 2-52 29-85 (85)
6 2kr4_A Ubiquitin conjugation f 99.3 7E-13 2.4E-17 95.4 1.9 55 2-58 24-80 (85)
7 2c2l_A CHIP, carboxy terminus 99.3 5.9E-13 2E-17 108.2 1.2 57 1-58 217-275 (281)
8 4ayc_A E3 ubiquitin-protein li 99.3 7.6E-13 2.6E-17 101.4 1.5 49 2-52 63-111 (138)
9 2ecv_A Tripartite motif-contai 99.3 3.4E-12 1.2E-16 87.6 4.2 51 2-52 29-85 (85)
10 2kre_A Ubiquitin conjugation f 99.2 1.5E-12 5E-17 96.9 1.6 55 2-58 39-95 (100)
11 2y43_A E3 ubiquitin-protein li 99.2 4E-12 1.4E-16 91.6 2.1 54 2-57 32-88 (99)
12 1wgm_A Ubiquitin conjugation f 99.2 4.4E-12 1.5E-16 94.0 2.2 56 1-58 31-89 (98)
13 3lrq_A E3 ubiquitin-protein li 99.2 4.5E-12 1.5E-16 92.6 2.1 49 2-51 32-83 (100)
14 1jm7_A BRCA1, breast cancer ty 99.2 1.2E-11 3.9E-16 89.8 4.1 54 2-55 31-87 (112)
15 1jm7_B BARD1, BRCA1-associated 99.2 7.3E-12 2.5E-16 93.3 1.8 53 2-58 32-87 (117)
16 2ckl_A Polycomb group ring fin 99.1 7E-12 2.4E-16 91.8 1.5 50 2-53 25-81 (108)
17 1z6u_A NP95-like ring finger p 99.1 1.3E-11 4.4E-16 97.1 2.6 54 2-56 88-144 (150)
18 2yur_A Retinoblastoma-binding 99.1 2.1E-11 7.2E-16 84.3 3.4 39 2-40 25-64 (74)
19 2csy_A Zinc finger protein 183 99.1 1.5E-11 5E-16 85.8 1.6 43 2-46 25-68 (81)
20 3l11_A E3 ubiquitin-protein li 99.1 1.8E-11 6E-16 90.4 1.3 38 2-40 25-62 (115)
21 2yu4_A E3 SUMO-protein ligase 99.1 1.4E-11 4.8E-16 89.6 0.7 57 1-57 16-82 (94)
22 2f42_A STIP1 homology and U-bo 99.1 2.3E-11 7.7E-16 100.2 1.9 56 2-58 116-173 (179)
23 2djb_A Polycomb group ring fin 99.1 8.6E-11 2.9E-15 80.4 3.8 37 2-40 25-62 (72)
24 1chc_A Equine herpes virus-1 r 99.1 4.4E-11 1.5E-15 80.3 2.3 37 5-43 19-55 (68)
25 2ecy_A TNF receptor-associated 99.0 1E-10 3.4E-15 78.7 3.7 38 2-40 25-62 (66)
26 2ysl_A Tripartite motif-contai 99.0 1E-10 3.5E-15 79.2 2.9 39 2-40 30-69 (73)
27 2ckl_B Ubiquitin ligase protei 99.0 5.3E-11 1.8E-15 92.9 1.5 52 2-54 64-119 (165)
28 3hct_A TNF receptor-associated 99.0 6.3E-11 2.2E-15 88.4 1.0 55 2-57 28-84 (118)
29 2ct2_A Tripartite motif protei 99.0 1.7E-10 5.8E-15 80.2 3.1 36 5-40 32-68 (88)
30 1rmd_A RAG1; V(D)J recombinati 99.0 1.4E-10 4.7E-15 85.7 1.6 38 2-40 33-70 (116)
31 2ea6_A Ring finger protein 4; 99.0 2.4E-10 8.2E-15 76.0 2.6 32 6-39 36-67 (69)
32 2d8t_A Dactylidin, ring finger 98.9 2.3E-10 7.7E-15 78.1 1.8 37 2-40 25-61 (71)
33 1g25_A CDK-activating kinase a 98.9 4.4E-10 1.5E-14 75.3 3.2 34 6-40 22-55 (65)
34 3ng2_A RNF4, snurf, ring finge 98.9 3.5E-10 1.2E-14 76.0 2.6 33 6-40 31-63 (71)
35 2kiz_A E3 ubiquitin-protein li 98.9 4.5E-10 1.5E-14 75.7 2.9 36 4-41 29-64 (69)
36 2xeu_A Ring finger protein 4; 98.9 3.7E-10 1.3E-14 74.1 2.4 34 5-40 23-56 (64)
37 2ecj_A Tripartite motif-contai 98.9 7.2E-10 2.5E-14 71.8 3.5 33 2-34 25-58 (58)
38 2ysj_A Tripartite motif-contai 98.9 7.2E-10 2.4E-14 73.7 2.9 33 2-34 30-63 (63)
39 1iym_A EL5; ring-H2 finger, ub 98.9 8.7E-10 3E-14 71.1 2.6 33 5-39 21-54 (55)
40 1v87_A Deltex protein 2; ring- 98.9 1.4E-09 4.8E-14 79.6 3.9 36 7-42 58-96 (114)
41 2ecm_A Ring finger and CHY zin 98.9 7.5E-10 2.6E-14 71.3 2.1 33 5-39 22-54 (55)
42 2ect_A Ring finger protein 126 98.8 9.1E-10 3.1E-14 75.8 2.5 33 6-40 32-64 (78)
43 3htk_C E3 SUMO-protein ligase 98.8 3.7E-10 1.3E-14 98.8 -0.1 55 2-56 191-250 (267)
44 2l0b_A E3 ubiquitin-protein li 98.8 9.2E-10 3.2E-14 79.0 1.8 34 5-40 56-89 (91)
45 2ep4_A Ring finger protein 24; 98.8 2.6E-09 9E-14 72.8 3.2 32 8-41 34-65 (74)
46 4ap4_A E3 ubiquitin ligase RNF 98.8 2.4E-09 8.1E-14 78.4 3.1 34 5-40 27-60 (133)
47 1x4j_A Ring finger protein 38; 98.8 1.6E-09 5.6E-14 74.3 1.9 33 6-40 40-72 (75)
48 2ecn_A Ring finger protein 141 98.8 6.6E-10 2.3E-14 75.0 -0.3 33 6-40 28-60 (70)
49 1e4u_A Transcriptional repress 98.8 5E-09 1.7E-13 75.0 4.2 30 10-40 33-62 (78)
50 3hcs_A TNF receptor-associated 98.8 1.3E-09 4.3E-14 85.3 1.1 54 2-56 28-83 (170)
51 3knv_A TNF receptor-associated 98.7 6.2E-10 2.1E-14 86.9 -1.4 37 2-39 41-77 (141)
52 1bor_A Transcription factor PM 98.7 4.9E-09 1.7E-13 69.5 1.9 34 2-40 16-49 (56)
53 4ic3_A E3 ubiquitin-protein li 98.7 4.5E-09 1.5E-13 73.2 1.2 33 2-40 34-67 (74)
54 2ecl_A Ring-box protein 2; RNF 98.7 7.7E-09 2.6E-13 73.1 2.3 32 7-40 45-76 (81)
55 4ap4_A E3 ubiquitin ligase RNF 98.6 9.8E-09 3.4E-13 75.1 2.2 34 5-40 92-125 (133)
56 2ecg_A Baculoviral IAP repeat- 98.5 6.5E-08 2.2E-12 67.1 3.7 33 2-40 35-68 (75)
57 2yho_A E3 ubiquitin-protein li 98.5 2.8E-08 9.6E-13 70.6 1.1 32 3-40 29-61 (79)
58 3dpl_R Ring-box protein 1; ubi 98.5 5.5E-08 1.9E-12 73.3 2.5 33 6-40 69-101 (106)
59 2vje_B MDM4 protein; proto-onc 98.4 5.2E-08 1.8E-12 66.3 0.9 34 5-40 20-56 (63)
60 2vje_A E3 ubiquitin-protein li 98.3 1.3E-07 4.3E-12 64.6 1.4 35 4-40 20-57 (64)
61 4a0k_B E3 ubiquitin-protein li 98.3 9.6E-08 3.3E-12 73.8 0.0 32 7-40 81-112 (117)
62 1wim_A KIAA0161 protein; ring 98.2 1E-07 3.6E-12 68.3 -1.1 30 9-38 25-62 (94)
63 2ea5_A Cell growth regulator w 98.1 1.2E-06 4.2E-11 60.7 2.4 32 3-40 26-58 (68)
64 2d8s_A Cellular modulator of i 98.1 1.6E-06 5.3E-11 62.4 2.6 38 3-40 28-70 (80)
65 3vk6_A E3 ubiquitin-protein li 98.0 1.7E-06 5.8E-11 66.7 2.4 36 6-42 16-51 (101)
66 2bay_A PRE-mRNA splicing facto 97.9 3.9E-06 1.3E-10 57.4 1.7 41 2-44 13-56 (61)
67 2ct0_A Non-SMC element 1 homol 97.6 3.2E-05 1.1E-09 55.5 3.2 32 9-40 33-64 (74)
68 1vyx_A ORF K3, K3RING; zinc-bi 97.2 0.00022 7.5E-09 48.7 3.0 37 3-39 17-58 (60)
69 2jun_A Midline-1; B-BOX, TRIM, 92.8 0.036 1.2E-06 39.5 1.4 20 3-22 15-36 (101)
70 2jmo_A Parkin; IBR, E3 ligase, 85.3 0.16 5.6E-06 36.0 -0.0 14 9-22 55-68 (80)
71 2ko5_A Ring finger protein Z; 85.2 0.32 1.1E-05 37.4 1.5 30 9-40 44-73 (99)
72 3i2d_A E3 SUMO-protein ligase 83.1 0.83 2.8E-05 41.6 3.6 33 8-40 266-300 (371)
73 2ct7_A Ring finger protein 31; 78.7 0.19 6.7E-06 35.8 -1.7 25 9-33 48-72 (86)
74 3m62_A Ubiquitin conjugation f 78.6 0.85 2.9E-05 46.1 2.2 55 2-58 901-958 (968)
75 3fyb_A Protein of unknown func 72.9 1.1 3.9E-05 34.6 1.1 11 13-23 41-51 (104)
76 2o35_A Hypothetical protein DU 72.8 1.1 3.9E-05 34.6 1.1 11 13-23 42-52 (105)
77 1weo_A Cellulose synthase, cat 70.1 3.4 0.00012 31.4 3.1 31 9-40 40-70 (93)
78 2gmg_A Hypothetical protein PF 64.1 2.8 9.5E-05 32.2 1.6 28 6-40 69-96 (105)
79 2kdx_A HYPA, hydrogenase/ureas 47.7 9 0.00031 28.4 2.0 13 28-40 89-102 (119)
80 1wd2_A Ariadne-1 protein homol 44.0 3.7 0.00013 27.9 -0.6 16 10-25 32-47 (60)
81 2m0e_A Zinc finger and BTB dom 43.6 12 0.00042 18.4 1.6 12 29-40 3-14 (29)
82 1z60_A TFIIH basal transcripti 43.1 16 0.00053 25.2 2.5 36 13-49 16-54 (59)
83 3mjh_B Early endosome antigen 41.7 6.8 0.00023 24.4 0.4 13 28-40 5-17 (34)
84 4fo9_A E3 SUMO-protein ligase 41.6 12 0.00042 33.8 2.3 33 8-40 232-266 (360)
85 1ard_A Yeast transcription fac 40.5 14 0.00047 18.4 1.5 12 29-40 3-14 (29)
86 1klr_A Zinc finger Y-chromosom 38.5 17 0.00058 18.0 1.7 12 29-40 3-14 (30)
87 1p7a_A BF3, BKLF, kruppel-like 37.1 14 0.00046 19.9 1.2 12 29-40 12-23 (37)
88 1znf_A 31ST zinc finger from X 37.0 14 0.00049 18.2 1.2 12 29-40 2-13 (27)
89 1joc_A EEA1, early endosomal a 36.6 9.7 0.00033 28.9 0.7 14 9-22 90-103 (125)
90 1paa_A Yeast transcription fac 34.8 18 0.00062 18.2 1.4 12 29-40 3-14 (30)
91 1vfy_A Phosphatidylinositol-3- 33.2 12 0.00042 25.6 0.7 13 9-21 32-44 (73)
92 2elr_A Zinc finger protein 406 32.8 19 0.00067 19.0 1.4 12 29-40 10-21 (36)
93 2wbf_X Serine-repeat antigen p 32.5 11 0.00038 30.8 0.4 12 113-124 229-240 (265)
94 2lbm_A Transcriptional regulat 32.3 32 0.0011 27.2 3.1 28 9-36 80-116 (142)
95 3t7l_A Zinc finger FYVE domain 31.8 13 0.00045 26.6 0.7 14 9-22 41-54 (90)
96 3vhs_A ATPase wrnip1; zinc fin 31.5 5.6 0.00019 24.2 -1.1 20 30-49 8-27 (29)
97 2cio_A Papain; hydrolase/inhib 31.4 12 0.00041 29.9 0.4 13 113-125 179-191 (212)
98 2cs3_A Protein C14ORF4, MY039 31.4 13 0.00045 28.0 0.6 23 11-33 38-63 (93)
99 3kwz_A Cathepsin K; enzyme inh 31.1 12 0.00042 29.6 0.4 13 113-125 186-198 (215)
100 1m6d_A Cathepsin F, catsf; pap 31.0 12 0.00042 29.8 0.4 13 113-125 185-197 (214)
101 3ql9_A Transcriptional regulat 30.9 29 0.001 27.0 2.6 28 9-36 74-110 (129)
102 1rim_A E6APC2 peptide; E6-bind 30.6 24 0.00081 18.9 1.5 12 29-40 3-14 (33)
103 1o0e_A Ervatamin C; plant cyst 30.6 13 0.00043 29.7 0.4 13 113-125 177-189 (208)
104 3ovx_A Cathepsin S; hydrolase, 30.5 13 0.00043 29.6 0.4 13 113-125 189-201 (218)
105 3ioq_A CMS1MS2; caricaceae, cy 30.5 13 0.00043 29.7 0.4 14 113-126 179-192 (213)
106 1ppo_A Protease omega; hydrola 30.5 13 0.00043 29.8 0.4 13 113-125 183-195 (216)
107 2lvu_A Zinc finger and BTB dom 36.1 11 0.00038 18.7 0.0 12 29-40 3-14 (26)
108 1yal_A Chymopapain; hydrolase, 29.8 13 0.00045 29.8 0.4 13 113-125 183-195 (218)
109 3f5v_A DER P 1 allergen; aller 29.3 14 0.00046 29.5 0.4 13 113-125 194-206 (222)
110 2xu3_A Cathepsin L1; hydrolase 29.3 14 0.00046 29.6 0.4 13 113-125 191-203 (220)
111 3p5u_A Actinidin; SAD, cystein 29.2 14 0.00047 29.6 0.4 13 113-125 186-198 (220)
112 1y02_A CARP2, FYVE-ring finger 29.0 15 0.00053 28.1 0.7 25 9-35 40-64 (120)
113 2bdz_A Mexicain; cysteine prot 28.9 14 0.00048 29.6 0.4 14 113-126 179-192 (214)
114 2kj3_A Small S protein, HET-S; 28.7 20 0.0007 26.4 1.3 23 100-123 51-73 (79)
115 3f75_A Toxopain-2, cathepsin L 28.1 15 0.0005 29.2 0.4 13 113-125 193-205 (224)
116 3tnx_A Papain; hydrolase, cyto 28.0 15 0.0005 32.7 0.4 13 113-125 330-342 (363)
117 2b1m_A SPE31; papain-like, sug 28.0 15 0.0005 30.2 0.4 14 113-126 192-205 (246)
118 3cbj_A Cathepsin B; cathepsin 28.0 15 0.0005 30.4 0.4 13 113-125 229-241 (266)
119 8pch_A Cathepsin H; hydrolase, 28.0 15 0.00051 29.2 0.4 13 113-125 190-202 (220)
120 1iwd_A Ervatamin B; cysteine p 27.9 15 0.00051 29.5 0.4 13 113-125 182-194 (215)
121 1wfk_A Zinc finger, FYVE domai 27.9 14 0.00046 26.6 0.2 14 9-22 30-43 (88)
122 3u8e_A Papain-like cysteine pr 27.9 15 0.00051 29.5 0.4 13 113-125 187-199 (222)
123 3i06_A Cruzipain; autocatalyti 27.8 15 0.00051 29.3 0.4 13 113-125 186-198 (215)
124 1cqd_A Protein (protease II); 27.7 15 0.00052 29.5 0.4 13 113-125 185-197 (221)
125 1s4v_A Cysteine endopeptidase; 27.1 16 0.00053 29.6 0.4 13 113-125 187-199 (229)
126 2kvf_A Zinc finger and BTB dom 26.4 17 0.00058 18.1 0.4 12 29-40 4-15 (28)
127 2oul_A Falcipain 2; cysteine p 26.4 16 0.00056 29.7 0.4 13 113-125 208-220 (241)
128 3bwk_A Cysteine protease falci 26.2 17 0.00057 29.7 0.4 13 113-125 210-222 (243)
129 2lvt_A Zinc finger and BTB dom 32.0 14 0.00048 18.6 0.0 12 29-40 3-14 (29)
130 1deu_A Procathepsin X; cystein 26.0 17 0.00057 30.5 0.4 13 113-125 239-251 (277)
131 2yte_A Zinc finger protein 473 25.9 30 0.001 19.0 1.4 13 28-40 10-22 (42)
132 2lvr_A Zinc finger and BTB dom 31.4 15 0.0005 18.5 0.0 12 29-40 4-15 (30)
133 2fo5_A Cysteine proteinase EP- 25.3 18 0.0006 30.4 0.4 13 113-125 192-204 (262)
134 1rik_A E6APC1 peptide; E6-bind 24.9 19 0.00065 17.9 0.4 12 29-40 3-14 (29)
135 2pv0_B DNA (cytosine-5)-methyl 24.7 35 0.0012 31.1 2.3 29 9-37 112-148 (386)
136 3pbh_A Procathepsin B; thiol p 24.3 20 0.0007 30.7 0.7 13 113-125 286-298 (317)
137 3hhi_A Cathepsin B-like cystei 24.2 19 0.00065 31.1 0.4 14 112-125 283-296 (325)
138 2kvh_A Zinc finger and BTB dom 24.0 20 0.00069 17.8 0.4 12 29-40 4-15 (27)
139 1pci_A Procaricain; zymogen, h 23.8 19 0.00067 30.9 0.4 13 113-125 289-301 (322)
140 2yti_A Zinc finger protein 347 23.4 39 0.0013 19.1 1.6 13 28-40 12-24 (46)
141 2en7_A Zinc finger protein 268 23.3 37 0.0013 18.8 1.5 12 29-40 13-24 (44)
142 1l8d_A DNA double-strand break 23.2 20 0.00067 25.8 0.3 12 29-40 48-59 (112)
143 2ytb_A Zinc finger protein 32; 23.2 33 0.0011 18.8 1.3 12 29-40 12-23 (42)
144 1cs8_A Human procathepsin L; p 23.2 20 0.0007 30.7 0.4 13 113-125 287-299 (316)
145 3qsd_A Cathepsin B-like peptid 23.1 21 0.0007 29.2 0.4 13 113-125 225-237 (254)
146 1by8_A Protein (procathepsin K 23.1 20 0.0007 30.6 0.4 13 113-125 285-297 (314)
147 2eon_A ZFP-95, zinc finger pro 23.1 37 0.0012 19.3 1.5 13 28-40 12-24 (46)
148 2m0f_A Zinc finger and BTB dom 22.9 22 0.00074 17.5 0.4 12 29-40 3-14 (29)
149 2eoh_A Zinc finger protein 28 22.8 40 0.0014 19.1 1.6 13 28-40 12-24 (46)
150 2o6x_A Procathepsin L1, secret 22.8 21 0.00072 30.5 0.4 13 113-125 277-289 (310)
151 3ois_A Cysteine protease; alph 22.6 21 0.00073 29.9 0.4 15 113-127 259-273 (291)
152 2elo_A Zinc finger protein 406 22.5 21 0.00071 19.1 0.2 12 29-40 10-21 (37)
153 2enf_A Zinc finger protein 347 22.3 39 0.0013 19.1 1.5 13 28-40 12-24 (46)
154 1xkg_A DER P I, major mite fec 22.3 22 0.00074 30.6 0.4 13 113-125 274-286 (312)
155 2c0y_A Procathepsin S; proenzy 22.2 22 0.00075 30.4 0.4 13 113-125 286-298 (315)
156 2eos_A B-cell lymphoma 6 prote 22.0 38 0.0013 18.7 1.3 12 29-40 12-23 (42)
157 6rxn_A Rubredoxin; electron tr 22.0 42 0.0014 21.9 1.7 32 8-39 8-41 (46)
158 2eou_A Zinc finger protein 473 22.0 44 0.0015 18.7 1.7 13 28-40 12-24 (44)
159 3qj3_A Cathepsin L-like protei 22.0 22 0.00076 30.7 0.4 13 113-125 302-314 (331)
160 2elt_A Zinc finger protein 406 21.6 24 0.00082 18.7 0.4 12 29-40 10-21 (36)
161 2en9_A Zinc finger protein 28 21.6 42 0.0014 19.0 1.5 13 28-40 12-24 (46)
162 3qt4_A Cathepsin-L-like midgut 21.4 23 0.00079 30.7 0.4 13 113-125 300-312 (329)
163 2eq1_A Zinc finger protein 347 21.4 46 0.0016 18.8 1.6 13 28-40 12-24 (46)
164 2eq2_A Zinc finger protein 347 21.3 44 0.0015 18.8 1.6 13 28-40 12-24 (46)
165 2elx_A Zinc finger protein 406 21.3 24 0.00083 18.4 0.4 12 29-40 8-19 (35)
166 2emg_A Zinc finger protein 484 21.3 42 0.0014 18.9 1.4 12 29-40 13-24 (46)
167 2emz_A ZFP-95, zinc finger pro 21.0 46 0.0016 18.8 1.6 13 28-40 12-24 (46)
168 3a1b_A DNA (cytosine-5)-methyl 21.0 36 0.0012 27.6 1.5 28 9-36 98-133 (159)
169 1p9i_A Cortexillin I/GCN4 hybr 21.0 95 0.0033 18.9 3.0 20 167-186 11-30 (31)
170 2ep1_A Zinc finger protein 484 20.9 46 0.0016 18.7 1.6 13 28-40 12-24 (46)
171 1lv3_A Hypothetical protein YA 20.9 22 0.00077 25.2 0.2 10 30-39 11-20 (68)
172 2enh_A Zinc finger protein 28 20.7 42 0.0014 19.0 1.4 13 28-40 12-24 (46)
173 2kfq_A FP1; protein, de novo p 20.7 32 0.0011 18.2 0.8 12 29-40 3-14 (32)
174 2kvg_A Zinc finger and BTB dom 20.6 17 0.0006 18.3 -0.3 12 29-40 4-15 (27)
175 2m0d_A Zinc finger and BTB dom 20.4 26 0.00089 17.3 0.3 12 29-40 4-15 (30)
176 4rxn_A Rubredoxin; electron tr 20.2 47 0.0016 22.3 1.7 16 24-39 32-47 (54)
177 2els_A Zinc finger protein 406 20.1 26 0.0009 18.7 0.3 12 29-40 10-21 (36)
178 2eom_A ZFP-95, zinc finger pro 20.0 49 0.0017 18.8 1.6 12 29-40 13-24 (46)
No 1
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.39 E-value=7.6e-14 Score=99.02 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=48.4
Q ss_pred CCCCCcCC-CCCcccHHhHHhhhccCCCCCCCCCCCCCC---cCccccccccchhhhhhhhh
Q 029308 2 LGQDSSPG-NGSCKSATCILRWASYVRNPTCPQCKHPFE---FLHVHRSLDGSISDYMFEES 59 (195)
Q Consensus 2 ~~QpVtl~-CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs---~l~vNr~LdG~vedy~~EeS 59 (195)
+..||+++ |||+||..||.+|+.......||+|++++. .+.+|..|.+.++.+..+++
T Consensus 23 ~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 23 MTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp CSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred hcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence 56799999 999999999999987555578999999984 37889999988888776543
No 2
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.38 E-value=1e-13 Score=95.74 Aligned_cols=57 Identities=16% Similarity=0.301 Sum_probs=47.9
Q ss_pred CCCCCCcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc--Cccccccccchhhhhhhh
Q 029308 1 MLGQDSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISDYMFEE 58 (195)
Q Consensus 1 ~~~QpVtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~--l~vNr~LdG~vedy~~Ee 58 (195)
++.+||+++|||+||..||.+|+.. ...+||+|++++.. +.+|..|.+.|+.|...+
T Consensus 17 ~~~~Pv~~~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~ 75 (78)
T 1t1h_A 17 LMKDPVIVSTGQTYERSSIQKWLDA-GHKTCPKSQETLLHAGLTPNYVLKSLIALWCESN 75 (78)
T ss_dssp CCSSEEEETTTEEEEHHHHHHHHTT-TCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHS
T ss_pred cccCCEEcCCCCeecHHHHHHHHHH-CcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHc
Confidence 3568999999999999999999764 24689999999974 788999999988876553
No 3
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.33 E-value=3.7e-13 Score=100.82 Aligned_cols=55 Identities=13% Similarity=0.209 Sum_probs=45.9
Q ss_pred CCCCCcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc---Cccccccccchhhhhhh
Q 029308 2 LGQDSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF---LHVHRSLDGSISDYMFE 57 (195)
Q Consensus 2 ~~QpVtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~---l~vNr~LdG~vedy~~E 57 (195)
+..||+++|||+||..||.+|+.. ....||+|++++.. +.+|..|.++++.+.-.
T Consensus 62 ~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 62 VFRPITTVCQHNVCKDCLDRSFRA-QVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp CSSEEECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred HcCcEEeeCCCcccHHHHHHHHhH-CcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 567899999999999999999863 33589999999975 88999999888765543
No 4
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.31 E-value=7.1e-13 Score=90.94 Aligned_cols=51 Identities=22% Similarity=0.421 Sum_probs=42.0
Q ss_pred CCCCCcCCCCCcccHHhHHhhhccC-----CCCCCCCCCCCCCc--Cccccccccchh
Q 029308 2 LGQDSSPGNGSCKSATCILRWASYV-----RNPTCPQCKHPFEF--LHVHRSLDGSIS 52 (195)
Q Consensus 2 ~~QpVtl~CGHsFC~~CI~rW~e~k-----q~~sCP~CK~pFs~--l~vNr~LdG~ve 52 (195)
+..|++++|||+||..||.+|+... ....||+|+.++.. +.+|..|.++++
T Consensus 22 ~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lve 79 (79)
T 2egp_A 22 LTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIVE 79 (79)
T ss_dssp CSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCCC
T ss_pred cCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhhC
Confidence 4678999999999999999997652 24689999999974 778888887653
No 5
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.28 E-value=1.6e-12 Score=89.26 Aligned_cols=51 Identities=20% Similarity=0.366 Sum_probs=42.3
Q ss_pred CCCCCcCCCCCcccHHhHHhhhccC----CCCCCCCCCCCCCc--Cccccccccchh
Q 029308 2 LGQDSSPGNGSCKSATCILRWASYV----RNPTCPQCKHPFEF--LHVHRSLDGSIS 52 (195)
Q Consensus 2 ~~QpVtl~CGHsFC~~CI~rW~e~k----q~~sCP~CK~pFs~--l~vNr~LdG~ve 52 (195)
+.+|++++|||.||..||.+|+... ....||+|+.++.. +.+|..|.++++
T Consensus 29 ~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ve 85 (85)
T 2ecw_A 29 LKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIVE 85 (85)
T ss_dssp CSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSCC
T ss_pred hCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhhC
Confidence 4678899999999999999998653 24689999999984 778888887763
No 6
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.28 E-value=7e-13 Score=95.38 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=48.2
Q ss_pred CCCCCcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc--Cccccccccchhhhhhhh
Q 029308 2 LGQDSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISDYMFEE 58 (195)
Q Consensus 2 ~~QpVtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~--l~vNr~LdG~vedy~~Ee 58 (195)
+-+||+++|||+||+.||.+|+.. ..+||+|+.+++. +.+|..|.+.|+.+..+.
T Consensus 24 m~dPV~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~ 80 (85)
T 2kr4_A 24 MTDPVRLPSGTVMDRSIILRHLLN--SPTDPFNRQMLTESMLEPVPELKEQIQAWMREK 80 (85)
T ss_dssp CSSEEECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred hcCCeECCCCCEECHHHHHHHHhc--CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHh
Confidence 568999999999999999999874 3689999999985 889999999998886553
No 7
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.27 E-value=5.9e-13 Score=108.15 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=48.6
Q ss_pred CCCCCCcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc--Cccccccccchhhhhhhh
Q 029308 1 MLGQDSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISDYMFEE 58 (195)
Q Consensus 1 ~~~QpVtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~--l~vNr~LdG~vedy~~Ee 58 (195)
++.+||+++|||+||+.||.+|+.... .+||+|+.+++. +.+|..|...|+.|..+.
T Consensus 217 ~~~dPv~~~~gh~f~~~~i~~~~~~~~-~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~ 275 (281)
T 2c2l_A 217 LMREPCITPSGITYDRKDIEEHLQRVG-HFNPVTRSPLTQEQLIPNLAMKEVIDAFISEN 275 (281)
T ss_dssp BCSSEEECSSCCEEETTHHHHHHHHTC-SSCTTTCCCCCGGGCEECHHHHHHHHHHHTTC
T ss_pred HhcCCeECCCCCEECHHHHHHHHHHCC-CCCcCCCCCCchhcCcccHHHHHHHHHHHHHC
Confidence 367899999999999999999986532 459999999984 889999999998887654
No 8
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.27 E-value=7.6e-13 Score=101.40 Aligned_cols=49 Identities=18% Similarity=0.344 Sum_probs=38.8
Q ss_pred CCCCCcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCcCccccccccchh
Q 029308 2 LGQDSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGSIS 52 (195)
Q Consensus 2 ~~QpVtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~l~vNr~LdG~ve 52 (195)
+-.||+++|||+||..||.+|+... .+||+||+++.....+..+++.++
T Consensus 63 ~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~~~~~~~i~ 111 (138)
T 4ayc_A 63 FIEAVTLNCAHSFCSYCINEWMKRK--IECPICRKDIKSKTYSLVLDNCIN 111 (138)
T ss_dssp CSSEEEETTSCEEEHHHHHHHTTTC--SBCTTTCCBCCCEEECHHHHHHHH
T ss_pred cCCceECCCCCCccHHHHHHHHHcC--CcCCCCCCcCCCCCCccchhHHHH
Confidence 4578999999999999999997643 689999999987555555554443
No 9
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.4e-12 Score=87.63 Aligned_cols=51 Identities=18% Similarity=0.358 Sum_probs=42.1
Q ss_pred CCCCCcCCCCCcccHHhHHhhhcc----CCCCCCCCCCCCCCc--Cccccccccchh
Q 029308 2 LGQDSSPGNGSCKSATCILRWASY----VRNPTCPQCKHPFEF--LHVHRSLDGSIS 52 (195)
Q Consensus 2 ~~QpVtl~CGHsFC~~CI~rW~e~----kq~~sCP~CK~pFs~--l~vNr~LdG~ve 52 (195)
+.+|++++|||.||..||.+|+.. .....||+|+.++.. +.+|..|.++++
T Consensus 29 ~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ve 85 (85)
T 2ecv_A 29 LTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIVE 85 (85)
T ss_dssp CSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCCC
T ss_pred cCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhhC
Confidence 467899999999999999999765 234689999999984 778888887753
No 10
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.24 E-value=1.5e-12 Score=96.93 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=47.9
Q ss_pred CCCCCcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc--Cccccccccchhhhhhhh
Q 029308 2 LGQDSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISDYMFEE 58 (195)
Q Consensus 2 ~~QpVtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~--l~vNr~LdG~vedy~~Ee 58 (195)
+-+||+++|||+||+.||.+|+.. ..+||+|+.+++. +.+|..|.+.|+.+...+
T Consensus 39 m~dPV~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~ 95 (100)
T 2kre_A 39 MTDPVRLPSGTIMDRSIILRHLLN--SPTDPFNRQTLTESMLEPVPELKEQIQAWMREK 95 (100)
T ss_dssp CSSEEEETTTEEEEHHHHHHHTTS--CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTT
T ss_pred ccCCeECCCCCEEchHHHHHHHHc--CCCCCCCCCCCChhhceECHHHHHHHHHHHHHh
Confidence 568999999999999999999863 4789999999985 889999999998876553
No 11
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.20 E-value=4e-12 Score=91.63 Aligned_cols=54 Identities=22% Similarity=0.356 Sum_probs=44.2
Q ss_pred CCCCCcC-CCCCcccHHhHHhhhccCCCCCCCCCCCCCCc--Cccccccccchhhhhhh
Q 029308 2 LGQDSSP-GNGSCKSATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISDYMFE 57 (195)
Q Consensus 2 ~~QpVtl-~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~--l~vNr~LdG~vedy~~E 57 (195)
+..|+++ +|||+||..||.+|.... ..||+|+.++.. +.+|..|.++++.+...
T Consensus 32 ~~~p~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~ 88 (99)
T 2y43_A 32 FNIAMIIPQCSHNYCSLCIRKFLSYK--TQCPTCCVTVTEPDLKNNRILDELVKSLNFA 88 (99)
T ss_dssp CSSEEECTTTCCEEEHHHHHHHHTTC--CBCTTTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred hCCcCEECCCCCHhhHHHHHHHHHCC--CCCCCCCCcCChhhCCcCHHHHHHHHHHHHH
Confidence 4567777 999999999999997643 689999999985 77888888887765543
No 12
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.19 E-value=4.4e-12 Score=94.04 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=48.4
Q ss_pred CCCCCCcCCCC-CcccHHhHHhhhccCCCCCCCCCCCCCCc--Cccccccccchhhhhhhh
Q 029308 1 MLGQDSSPGNG-SCKSATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISDYMFEE 58 (195)
Q Consensus 1 ~~~QpVtl~CG-HsFC~~CI~rW~e~kq~~sCP~CK~pFs~--l~vNr~LdG~vedy~~Ee 58 (195)
++-+||+++|| |+||+.||.+|+.. ..+||+|+.++.. +.+|..|.+.|+.+....
T Consensus 31 ~m~dPV~~~cG~htf~r~cI~~~l~~--~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 31 LMCDPVVLPSSRVTVDRSTIARHLLS--DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER 89 (98)
T ss_dssp BCSSEEECTTTCCEEEHHHHHHHTTT--SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHS
T ss_pred cccCCeECCCCCeEECHHHHHHHHHh--CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHc
Confidence 35689999999 99999999999864 3689999999985 889999999998876553
No 13
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.19 E-value=4.5e-12 Score=92.59 Aligned_cols=49 Identities=27% Similarity=0.548 Sum_probs=38.5
Q ss_pred CCCCCc-CCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc--Cccccccccch
Q 029308 2 LGQDSS-PGNGSCKSATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSI 51 (195)
Q Consensus 2 ~~QpVt-l~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~--l~vNr~LdG~v 51 (195)
+..||+ ++|||+||..||.+|+.... ..||+|+.++.. +..|+.|+.++
T Consensus 32 ~~~p~~~~~CgH~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~~~l~~~~~~~~i~ 83 (100)
T 3lrq_A 32 LRDARLCPHCSKLCCFSCIRRWLTEQR-AQCPHCRAPLQLRELVNCRWAEEVT 83 (100)
T ss_dssp CSSEEECTTTCCEEEHHHHHHHHHHTC-SBCTTTCCBCCGGGCEECTTHHHHH
T ss_pred ccCccccCCCCChhhHHHHHHHHHHCc-CCCCCCCCcCCHHHhHhhHHHHHHH
Confidence 457888 99999999999999987542 689999999974 55555555544
No 14
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=1.2e-11 Score=89.84 Aligned_cols=54 Identities=15% Similarity=0.311 Sum_probs=42.9
Q ss_pred CCCCCcCCCCCcccHHhHHhhhccC-CCCCCCCCCCCCCc--Cccccccccchhhhh
Q 029308 2 LGQDSSPGNGSCKSATCILRWASYV-RNPTCPQCKHPFEF--LHVHRSLDGSISDYM 55 (195)
Q Consensus 2 ~~QpVtl~CGHsFC~~CI~rW~e~k-q~~sCP~CK~pFs~--l~vNr~LdG~vedy~ 55 (195)
+.+|++++|||.||..||.+|+... ....||+|+.++.. +..|..|...++.+.
T Consensus 31 ~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 31 IKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL 87 (112)
T ss_dssp CSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred hcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHH
Confidence 4678999999999999999997643 23589999999985 667777777766544
No 15
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=7.3e-12 Score=93.33 Aligned_cols=53 Identities=23% Similarity=0.344 Sum_probs=45.0
Q ss_pred CCCCCcC-CCCCcccHHhHHhhhccCCCCCCCCCCCCCCc--Cccccccccchhhhhhhh
Q 029308 2 LGQDSSP-GNGSCKSATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISDYMFEE 58 (195)
Q Consensus 2 ~~QpVtl-~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~--l~vNr~LdG~vedy~~Ee 58 (195)
+.+||++ +|||+||..||.+|+. ..||+|+.++.. +.+|..|.++++.+....
T Consensus 32 ~~~pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 32 LREPVCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp CSSCBCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred hhCccEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 5689999 9999999999999965 579999999974 788999999888665543
No 16
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.15 E-value=7e-12 Score=91.83 Aligned_cols=50 Identities=16% Similarity=0.309 Sum_probs=39.1
Q ss_pred CCCCCcC-CCCCcccHHhHHhhhccCCCCCCCCCCCCCCc------Cccccccccchhh
Q 029308 2 LGQDSSP-GNGSCKSATCILRWASYVRNPTCPQCKHPFEF------LHVHRSLDGSISD 53 (195)
Q Consensus 2 ~~QpVtl-~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~------l~vNr~LdG~ved 53 (195)
+.+||++ +|||+||..||.+|+... ..||+|+.++.. +.+|..|.++++.
T Consensus 25 ~~~p~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~ 81 (108)
T 2ckl_A 25 FIDATTIIECLHSFCKTCIVRYLETS--KYCPICDVQVHKTRPLLNIRSDKTLQDIVYK 81 (108)
T ss_dssp CSSEEEETTTCCEEEHHHHHHHHTSC--SBCTTTCCBSCSSCGGGGEEECHHHHHHHHH
T ss_pred HhCcCEeCCCCChhhHHHHHHHHHhC--CcCcCCCccccccCcccccCcCHHHHHHHHH
Confidence 4568887 999999999999997654 789999999884 3456666665544
No 17
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.14 E-value=1.3e-11 Score=97.12 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=44.8
Q ss_pred CCCCCcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc---Cccccccccchhhhhh
Q 029308 2 LGQDSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF---LHVHRSLDGSISDYMF 56 (195)
Q Consensus 2 ~~QpVtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~---l~vNr~LdG~vedy~~ 56 (195)
+.+||+++|||+||..||.+|+.. ....||+|+.++.. +.+|..|..+++.+.-
T Consensus 88 ~~~pv~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 88 VYQPVTTECFHNVCKDCLQRSFKA-QVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp CSSEEECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred hcCCEEcCCCCchhHHHHHHHHHh-CCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 567999999999999999999764 33589999999984 6788888888876553
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.13 E-value=2.1e-11 Score=84.29 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=33.2
Q ss_pred CCCCCcCC-CCCcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 2 LGQDSSPG-NGSCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 2 ~~QpVtl~-CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
+.+||+++ |||+||..||.+|+.......||+|++++..
T Consensus 25 ~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 25 MTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred HhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 56789999 9999999999999875545689999998663
No 19
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=1.5e-11 Score=85.80 Aligned_cols=43 Identities=14% Similarity=0.253 Sum_probs=34.5
Q ss_pred CCCCCcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc-Cccccc
Q 029308 2 LGQDSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF-LHVHRS 46 (195)
Q Consensus 2 ~~QpVtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~-l~vNr~ 46 (195)
+..||+++|||.||..||.+|.... ..||+|++++.. +.+|..
T Consensus 25 ~~~p~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~~~~ 68 (81)
T 2csy_A 25 FQNPVVTKCRHYFCESCALEHFRAT--PRCYICDQPTGGIFNPAKE 68 (81)
T ss_dssp CCSEEECTTSCEEEHHHHHHHHHHC--SBCSSSCCBCCSCCEECHH
T ss_pred hcCeeEccCCCHhHHHHHHHHHHCC--CcCCCcCccccccCCcHHH
Confidence 4568899999999999999997653 689999999874 444433
No 20
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.09 E-value=1.8e-11 Score=90.37 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=32.4
Q ss_pred CCCCCcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 2 LGQDSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 2 ~~QpVtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
+..||+++|||+||..||.+|+.. ....||+|++++..
T Consensus 25 ~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 25 LVEPVTLPCNHTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp CSSCEECTTSCEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred cCceeEcCCCCHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 467999999999999999999754 24689999999874
No 21
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=1.4e-11 Score=89.65 Aligned_cols=57 Identities=19% Similarity=0.291 Sum_probs=44.8
Q ss_pred CCCCCCcCC-CCCcccHHhHHhhhccC----CCCCCCC--CCCC-CC--cCccccccccchhhhhhh
Q 029308 1 MLGQDSSPG-NGSCKSATCILRWASYV----RNPTCPQ--CKHP-FE--FLHVHRSLDGSISDYMFE 57 (195)
Q Consensus 1 ~~~QpVtl~-CGHsFC~~CI~rW~e~k----q~~sCP~--CK~p-Fs--~l~vNr~LdG~vedy~~E 57 (195)
++..||+++ |||+||+.||.+||... ...+||+ |++. +. .|.+|..|...|+.+...
T Consensus 16 ~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 16 EMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp BCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred hhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 356899995 99999999999998642 2468999 9977 54 488888888888776433
No 22
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.08 E-value=2.3e-11 Score=100.20 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=48.2
Q ss_pred CCCCCcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc--Cccccccccchhhhhhhh
Q 029308 2 LGQDSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISDYMFEE 58 (195)
Q Consensus 2 ~~QpVtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~--l~vNr~LdG~vedy~~Ee 58 (195)
+.+||+++|||+||+.||.+|+.... .+||+|+.+++. +.+|..|.+.|+.+....
T Consensus 116 m~DPV~~~~Ghtfer~~I~~~l~~~~-~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~ 173 (179)
T 2f42_A 116 MREPCITPSGITYDRKDIEEHLQRVG-HFDPVTRSPLTQDQLIPNLAMKEVIDAFIQEN 173 (179)
T ss_dssp CSSEEECTTSCEEEHHHHHHHHHHTC-SBCTTTCCBCCGGGCEECHHHHHHHHHHHHHC
T ss_pred CCCCeECCCCCEECHHHHHHHHHhCC-CCCCCCcCCCChhhCcchHHHHHHHHHHHHHC
Confidence 56899999999999999999986533 379999999985 889999999998886554
No 23
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=8.6e-11 Score=80.43 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=31.7
Q ss_pred CCCCCcC-CCCCcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 2 LGQDSSP-GNGSCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 2 ~~QpVtl-~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
+..|+++ +|||.||..||.+|.... ..||+|++++..
T Consensus 25 ~~~p~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (72)
T 2djb_A 25 LIDATTITECLHTFCKSCIVRHFYYS--NRCPKCNIVVHQ 62 (72)
T ss_dssp CSSCEECSSSCCEECHHHHHHHHHHC--SSCTTTCCCCCS
T ss_pred HHCcCEECCCCCHHHHHHHHHHHHcC--CcCCCcCcccCc
Confidence 4467776 999999999999997653 689999999986
No 24
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.06 E-value=4.4e-11 Score=80.26 Aligned_cols=37 Identities=32% Similarity=0.539 Sum_probs=31.3
Q ss_pred CCcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCcCcc
Q 029308 5 DSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEFLHV 43 (195)
Q Consensus 5 pVtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~l~v 43 (195)
+++++|||.||..||.+|.... .+||+|++++..+..
T Consensus 19 ~~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~~ 55 (68)
T 1chc_A 19 SMALPCLHAFCYVCITRWIRQN--PTCPLCKVPVESVVH 55 (68)
T ss_dssp EEETTTTEEESTTHHHHHHHHS--CSTTTTCCCCCCEEC
T ss_pred cEecCCCCeeHHHHHHHHHhCc--CcCcCCChhhHhhhh
Confidence 3789999999999999997654 689999999986443
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1e-10 Score=78.70 Aligned_cols=38 Identities=18% Similarity=0.368 Sum_probs=31.8
Q ss_pred CCCCCcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 2 LGQDSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 2 ~~QpVtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
+..|++++|||.||..||.+|+.. ....||+|++++..
T Consensus 25 ~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 25 LCSPKQTECGHRFCESCMAALLSS-SSPKCTACQESIVK 62 (66)
T ss_dssp ESSCCCCSSSCCCCHHHHHHHHTT-SSCCCTTTCCCCCT
T ss_pred hcCeeECCCCCHHHHHHHHHHHHh-CcCCCCCCCcCCCh
Confidence 346889999999999999999752 34689999999874
No 26
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1e-10 Score=79.19 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=32.2
Q ss_pred CCCCCcCCCCCcccHHhHHhhhcc-CCCCCCCCCCCCCCc
Q 029308 2 LGQDSSPGNGSCKSATCILRWASY-VRNPTCPQCKHPFEF 40 (195)
Q Consensus 2 ~~QpVtl~CGHsFC~~CI~rW~e~-kq~~sCP~CK~pFs~ 40 (195)
+..|++++|||.||..||.+|... .....||+|++++..
T Consensus 30 ~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 30 LQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 456889999999999999999753 234589999999874
No 27
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.02 E-value=5.3e-11 Score=92.93 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=39.5
Q ss_pred CCCCCcC-CCCCcccHHhHHhhhccCCCCCCCCCCCCCCc---Cccccccccchhhh
Q 029308 2 LGQDSSP-GNGSCKSATCILRWASYVRNPTCPQCKHPFEF---LHVHRSLDGSISDY 54 (195)
Q Consensus 2 ~~QpVtl-~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~---l~vNr~LdG~vedy 54 (195)
+..||++ +|||.||..||.+|+.. ....||+|+.++.. +.+|..|..+++.+
T Consensus 64 ~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~ 119 (165)
T 2ckl_B 64 LKNTMTTKECLHRFCADCIITALRS-GNKECPTCRKKLVSKRSLRPDPNFDALISKI 119 (165)
T ss_dssp CSSEEEETTTCCEEEHHHHHHHHHT-TCCBCTTTCCBCCSGGGEEECHHHHHHHHHH
T ss_pred hhCcCEeCCCCChhHHHHHHHHHHh-CcCCCCCCCCcCCCcccCCcCHHHHHHHHHH
Confidence 4467776 99999999999999764 24689999999863 55666666665443
No 28
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.99 E-value=6.3e-11 Score=88.36 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=41.9
Q ss_pred CCCCCcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc--Cccccccccchhhhhhh
Q 029308 2 LGQDSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISDYMFE 57 (195)
Q Consensus 2 ~~QpVtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~--l~vNr~LdG~vedy~~E 57 (195)
+..||+++|||+||..||.+|.... ...||+|+.++.. +.++..+...+..+.+.
T Consensus 28 ~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~ 84 (118)
T 3hct_A 28 LREAVQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILLENQLFPDNFAKREILSLMVK 84 (118)
T ss_dssp CSSEEECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHTSEEE
T ss_pred hcCeEECCcCChhhHHHHHHHHhhC-CCCCCCCCCCcCHHhcccCHHHHHHHccceeE
Confidence 4578999999999999999997653 2489999999985 55666666665555443
No 29
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=1.7e-10 Score=80.21 Aligned_cols=36 Identities=14% Similarity=0.276 Sum_probs=30.7
Q ss_pred CCcCCCCCcccHHhHHhhhccC-CCCCCCCCCCCCCc
Q 029308 5 DSSPGNGSCKSATCILRWASYV-RNPTCPQCKHPFEF 40 (195)
Q Consensus 5 pVtl~CGHsFC~~CI~rW~e~k-q~~sCP~CK~pFs~ 40 (195)
|++++|||.||..||.+|.... ....||+|++++..
T Consensus 32 ~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 32 PKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp EEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred eEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 8899999999999999997643 23589999999875
No 30
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.96 E-value=1.4e-10 Score=85.68 Aligned_cols=38 Identities=24% Similarity=0.416 Sum_probs=32.8
Q ss_pred CCCCCcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 2 LGQDSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 2 ~~QpVtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
+..||+++|||+||..||.+|+... ..+||+|+.++..
T Consensus 33 ~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 33 LADPVETSCKHLFCRICILRCLKVM-GSYCPSCRYPCFP 70 (116)
T ss_dssp CSSEEECTTSCEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred hcCcEEcCCCCcccHHHHHHHHhHC-cCcCCCCCCCCCH
Confidence 4578999999999999999997652 3689999999985
No 31
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=2.4e-10 Score=76.01 Aligned_cols=32 Identities=22% Similarity=0.479 Sum_probs=28.6
Q ss_pred CcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCC
Q 029308 6 SSPGNGSCKSATCILRWASYVRNPTCPQCKHPFE 39 (195)
Q Consensus 6 Vtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs 39 (195)
++++|||.||..||.+|.... .+||+|++++.
T Consensus 36 ~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 67 (69)
T 2ea6_A 36 VSTECGHVFCSQCLRDSLKNA--NTCPTCRKKIN 67 (69)
T ss_dssp EECSSSCEEEHHHHHHHHHHC--SSCTTTCCCCC
T ss_pred EeCCCCChhcHHHHHHHHHcC--CCCCCCCCccC
Confidence 789999999999999997653 68999999886
No 32
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=2.3e-10 Score=78.15 Aligned_cols=37 Identities=11% Similarity=0.061 Sum_probs=31.6
Q ss_pred CCCCCcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 2 LGQDSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 2 ~~QpVtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
+.++++++|||.||..||.+|.... ..||+||+++..
T Consensus 25 ~~~~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 25 CVHPVSLPCKHVFCYLCVKGASWLG--KRCALCRQEIPE 61 (71)
T ss_dssp CSSEEEETTTEEEEHHHHHHCTTCS--SBCSSSCCBCCH
T ss_pred cCCCEEccCCCHHHHHHHHHHHHCC--CcCcCcCchhCH
Confidence 4567889999999999999996443 689999999985
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.93 E-value=4.4e-10 Score=75.33 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=28.9
Q ss_pred CcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 6 SSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 6 Vtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
++++|||+||..||.+|+.. ....||+|++++..
T Consensus 22 ~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 22 MVNVCGHTLCESCVDLLFVR-GAGNCPECGTPLRK 55 (65)
T ss_dssp EECTTCCCEEHHHHHHHHHT-TSSSCTTTCCCCSS
T ss_pred ecCCCCCHhHHHHHHHHHHc-CCCcCCCCCCcccc
Confidence 46899999999999999654 34689999999985
No 34
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.93 E-value=3.5e-10 Score=76.01 Aligned_cols=33 Identities=21% Similarity=0.463 Sum_probs=29.6
Q ss_pred CcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 6 SSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 6 Vtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
++++|||.||..||.+|.... .+||+|++++..
T Consensus 31 ~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 31 VSTECGHVFCSQCLRDSLKNA--NTCPTCRKKINH 63 (71)
T ss_dssp EECTTSCEEEHHHHHHHHHHC--SBCTTTCCBCCC
T ss_pred EeCCCCChHhHHHHHHHHHcC--CCCCCCCCccCh
Confidence 789999999999999997654 689999999985
No 35
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.92 E-value=4.5e-10 Score=75.68 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=30.7
Q ss_pred CCCcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCcC
Q 029308 4 QDSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEFL 41 (195)
Q Consensus 4 QpVtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~l 41 (195)
.++.++|||.||..||.+|.... .+||+|++++...
T Consensus 29 ~~~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 29 DVRRLPCMHLFHQVCVDQWLITN--KKCPICRVDIEAQ 64 (69)
T ss_dssp CEEECTTSCEEEHHHHHHHHHHC--SBCTTTCSBSCSC
T ss_pred cEEEeCCCCHHHHHHHHHHHHcC--CCCcCcCccccCc
Confidence 45778999999999999997654 5799999999863
No 36
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.92 E-value=3.7e-10 Score=74.08 Aligned_cols=34 Identities=21% Similarity=0.413 Sum_probs=29.9
Q ss_pred CCcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 5 DSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 5 pVtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
+++++|||.||..||.+|.... .+||+|++++..
T Consensus 23 ~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 23 IVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKINH 56 (64)
T ss_dssp EEEETTSCEEEHHHHHHHHHHC--SBCTTTCCBCTT
T ss_pred EEeCCCCCchhHHHHHHHHHcC--CCCCCCCccCCc
Confidence 4789999999999999997653 689999999885
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=7.2e-10 Score=71.82 Aligned_cols=33 Identities=30% Similarity=0.554 Sum_probs=27.6
Q ss_pred CCCCCcCCCCCcccHHhHHhhhcc-CCCCCCCCC
Q 029308 2 LGQDSSPGNGSCKSATCILRWASY-VRNPTCPQC 34 (195)
Q Consensus 2 ~~QpVtl~CGHsFC~~CI~rW~e~-kq~~sCP~C 34 (195)
+.+|++++|||.||..||.+|+.. .....||+|
T Consensus 25 ~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 25 LKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 457899999999999999999653 345689998
No 38
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=7.2e-10 Score=73.69 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=27.5
Q ss_pred CCCCCcCCCCCcccHHhHHhhhcc-CCCCCCCCC
Q 029308 2 LGQDSSPGNGSCKSATCILRWASY-VRNPTCPQC 34 (195)
Q Consensus 2 ~~QpVtl~CGHsFC~~CI~rW~e~-kq~~sCP~C 34 (195)
+.+|++++|||+||..||.+|+.. .....||+|
T Consensus 30 ~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 30 LQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 457899999999999999999863 234689998
No 39
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.86 E-value=8.7e-10 Score=71.13 Aligned_cols=33 Identities=24% Similarity=0.474 Sum_probs=27.6
Q ss_pred CCcCC-CCCcccHHhHHhhhccCCCCCCCCCCCCCC
Q 029308 5 DSSPG-NGSCKSATCILRWASYVRNPTCPQCKHPFE 39 (195)
Q Consensus 5 pVtl~-CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs 39 (195)
+++++ |||.||..||.+|... ..+||+||+++.
T Consensus 21 ~~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 21 ARFLPRCGHGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CEECSSSCCEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred eEECCCCCCcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 56665 9999999999999654 368999999874
No 40
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.86 E-value=1.4e-09 Score=79.61 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=29.7
Q ss_pred cCCCCCcccHHhHHhhhcc---CCCCCCCCCCCCCCcCc
Q 029308 7 SPGNGSCKSATCILRWASY---VRNPTCPQCKHPFEFLH 42 (195)
Q Consensus 7 tl~CGHsFC~~CI~rW~e~---kq~~sCP~CK~pFs~l~ 42 (195)
+++|||.||..||.+|... ....+||+||+.|....
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred cCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 6899999999999999742 23468999999998643
No 41
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.86 E-value=7.5e-10 Score=71.25 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=29.3
Q ss_pred CCcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCC
Q 029308 5 DSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFE 39 (195)
Q Consensus 5 pVtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs 39 (195)
++.++|||.||..||.+|.... .+||+|+++++
T Consensus 22 ~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 22 AHVLPCGHLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp EEECTTSCEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred eEecCCCCcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 6789999999999999997654 78999999875
No 42
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.85 E-value=9.1e-10 Score=75.76 Aligned_cols=33 Identities=18% Similarity=0.475 Sum_probs=28.5
Q ss_pred CcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 6 SSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 6 Vtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
+.++|||.||..||.+|.... .+||+||+++..
T Consensus 32 ~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 64 (78)
T 2ect_A 32 RQLPCNHLFHDSCIVPWLEQH--DSCPVCRKSLTG 64 (78)
T ss_dssp EECTTSCEEETTTTHHHHTTT--CSCTTTCCCCCC
T ss_pred EEeCCCCeecHHHHHHHHHcC--CcCcCcCCccCC
Confidence 446999999999999997543 689999999986
No 43
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.82 E-value=3.7e-10 Score=98.83 Aligned_cols=55 Identities=9% Similarity=0.071 Sum_probs=45.5
Q ss_pred CCCCCcC-CCCCcccHHhHHhhhccCCCCCCCC--CCCCCCc--Cccccccccchhhhhh
Q 029308 2 LGQDSSP-GNGSCKSATCILRWASYVRNPTCPQ--CKHPFEF--LHVHRSLDGSISDYMF 56 (195)
Q Consensus 2 ~~QpVtl-~CGHsFC~~CI~rW~e~kq~~sCP~--CK~pFs~--l~vNr~LdG~vedy~~ 56 (195)
|-.||++ .|||+||+.||.+||.......||+ |++++.. +.+|..|.+.++.+..
T Consensus 191 f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~ 250 (267)
T 3htk_C 191 YEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKM 250 (267)
T ss_dssp CSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHH
T ss_pred ccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHH
Confidence 5679984 9999999999999987544458999 9999885 8899999888876544
No 44
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.82 E-value=9.2e-10 Score=79.04 Aligned_cols=34 Identities=21% Similarity=0.410 Sum_probs=29.2
Q ss_pred CCcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 5 DSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 5 pVtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
+++++|||.||..||.+|.... .+||+|++++..
T Consensus 56 ~~~l~C~H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 56 ATELPCHHYFHKPCVSIWLQKS--GTCPVCRCMFPP 89 (91)
T ss_dssp EEEETTTEEEEHHHHHHHHTTT--CBCTTTCCBSSC
T ss_pred EEecCCCChHHHHHHHHHHHcC--CcCcCcCccCCC
Confidence 5678999999999999997543 689999998874
No 45
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=2.6e-09 Score=72.76 Aligned_cols=32 Identities=22% Similarity=0.551 Sum_probs=27.9
Q ss_pred CCCCCcccHHhHHhhhccCCCCCCCCCCCCCCcC
Q 029308 8 PGNGSCKSATCILRWASYVRNPTCPQCKHPFEFL 41 (195)
Q Consensus 8 l~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~l 41 (195)
++|||.||..||.+|.... .+||+|++++..+
T Consensus 34 ~~C~H~f~~~Ci~~~~~~~--~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 34 CPCKHAFHRKCLIKWLEVR--KVCPLCNMPVLQL 65 (74)
T ss_dssp ETTTEEEEHHHHHHHHHHC--SBCTTTCCBCSSC
T ss_pred cCCCCEecHHHHHHHHHcC--CcCCCcCcccccc
Confidence 4999999999999997654 5899999998864
No 46
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.79 E-value=2.4e-09 Score=78.39 Aligned_cols=34 Identities=21% Similarity=0.413 Sum_probs=30.2
Q ss_pred CCcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 5 DSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 5 pVtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
+++++|||+||..||.+|+... .+||+|++++..
T Consensus 27 ~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 27 IVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKINH 60 (133)
T ss_dssp EEEETTCCEEEHHHHHHHHTTC--SBCTTTCCBCTT
T ss_pred eEecCCCChhhHHHHHHHHHhC--CCCCCCCCcCcc
Confidence 3889999999999999997654 689999999985
No 47
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=1.6e-09 Score=74.35 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=28.7
Q ss_pred CcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 6 SSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 6 Vtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
+.++|||.||..||.+|.... .+||+||+++..
T Consensus 40 ~~l~C~H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 40 RVLPCNHEFHAKCVDKWLKAN--RTCPICRADSGP 72 (75)
T ss_dssp EEETTTEEEETTHHHHHHHHC--SSCTTTCCCCCC
T ss_pred EEECCCCHhHHHHHHHHHHcC--CcCcCcCCcCCC
Confidence 678999999999999997654 689999998874
No 48
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=6.6e-10 Score=75.03 Aligned_cols=33 Identities=21% Similarity=0.492 Sum_probs=29.1
Q ss_pred CcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 6 SSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 6 Vtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
++++|||.||..||.+|.. ...+||+||+++..
T Consensus 28 ~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 28 LILPCAHSFCQKCIDKWSD--RHRNCPICRLQMTG 60 (70)
T ss_dssp EEETTTEEECHHHHHHSSC--CCSSCHHHHHCTTC
T ss_pred cccCCCCcccHHHHHHHHH--CcCcCCCcCCcccC
Confidence 7889999999999999965 34789999999885
No 49
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.77 E-value=5e-09 Score=74.96 Aligned_cols=30 Identities=27% Similarity=0.532 Sum_probs=26.1
Q ss_pred CCCcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 10 NGSCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 10 CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
|||+||..||.++|.. ....||+||++|..
T Consensus 33 CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 33 CGYQICRFCWHRIRTD-ENGLCPACRKPYPE 62 (78)
T ss_dssp TSCCCCHHHHHHHTTS-SCSBCTTTCCBCSS
T ss_pred CCCCcCHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 9999999999997754 34689999999986
No 50
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.77 E-value=1.3e-09 Score=85.30 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=40.2
Q ss_pred CCCCCcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc--Cccccccccchhhhhh
Q 029308 2 LGQDSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISDYMF 56 (195)
Q Consensus 2 ~~QpVtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~--l~vNr~LdG~vedy~~ 56 (195)
+-.||+++|||+||..||.+|+... ...||+|+.++.. +.++..+...+..+.+
T Consensus 28 ~~~pv~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v 83 (170)
T 3hcs_A 28 LREAVQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILLENQLFPDNFAKREILSLMV 83 (170)
T ss_dssp CSSEEECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHTSEE
T ss_pred hcCcEECCCCCHHHHHHHHHHHHhC-CCCCCCCccCcchhhhhhhHHHHHHHhhccc
Confidence 4578999999999999999997643 2489999999885 4455555555544433
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.74 E-value=6.2e-10 Score=86.85 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=31.0
Q ss_pred CCCCCcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCC
Q 029308 2 LGQDSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFE 39 (195)
Q Consensus 2 ~~QpVtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs 39 (195)
+-+||+++|||+||..||.+|+... ...||+|+.+..
T Consensus 41 ~~~pv~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~ 77 (141)
T 3knv_A 41 LRRPFQAQCGHRYCSFCLASILSSG-PQNCAACVHEGI 77 (141)
T ss_dssp CSSEEECTTSCEEEHHHHHHHGGGS-CEECHHHHHTTC
T ss_pred hcCcEECCCCCccCHHHHHHHHhcC-CCCCCCCCCccc
Confidence 5678999999999999999997643 358999999753
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.69 E-value=4.9e-09 Score=69.50 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=29.4
Q ss_pred CCCCCcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 2 LGQDSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 2 ~~QpVtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
+..|++++|||+||..||.+| ...||+|++++..
T Consensus 16 ~~~p~~l~CgH~fC~~Ci~~~-----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 16 AKCPKLLPCLHTLCSGCLEAS-----GMQCPICQAPWPL 49 (56)
T ss_dssp CBCCSCSTTSCCSBTTTCSSS-----SSSCSSCCSSSSC
T ss_pred cCCeEEcCCCCcccHHHHccC-----CCCCCcCCcEeec
Confidence 567899999999999999885 2579999999874
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.66 E-value=4.5e-09 Score=73.20 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=29.4
Q ss_pred CCCCCcCCCCCc-ccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 2 LGQDSSPGNGSC-KSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 2 ~~QpVtl~CGHs-FC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
+-.+|+++|||. ||..||.+| ..||+||+++..
T Consensus 34 ~~~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 34 NIAIVFVPCGHLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp BCCEEEETTCCBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred CCCEEEcCCCChhHHHHhhhcC------ccCCCcCcCccC
Confidence 346789999999 999999998 579999999986
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=7.7e-09 Score=73.11 Aligned_cols=32 Identities=16% Similarity=0.422 Sum_probs=27.0
Q ss_pred cCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 7 SPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 7 tl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
+++|||.||..||.+|.... .+||+||+++..
T Consensus 45 ~~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~ 76 (81)
T 2ecl_A 45 WGECNHSFHNCCMSLWVKQN--NRCPLCQQDWVV 76 (81)
T ss_dssp EETTSCEEEHHHHHHHTTTC--CBCTTTCCBCCE
T ss_pred eCCCCCccChHHHHHHHHhC--CCCCCcCCCcch
Confidence 34599999999999996654 699999999874
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.63 E-value=9.8e-09 Score=75.07 Aligned_cols=34 Identities=21% Similarity=0.413 Sum_probs=30.1
Q ss_pred CCcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 5 DSSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 5 pVtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
+++++|||.||..||.+|.+.. .+||+|+.++..
T Consensus 92 ~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 92 IVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKINH 125 (133)
T ss_dssp EEEETTSBEEEHHHHHHHHHHC--SBCTTTCCBCCG
T ss_pred eEeCCCCChhhHHHHHHHHHcC--CCCCCCCCcCCh
Confidence 4788999999999999998654 699999999985
No 56
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=6.5e-08 Score=67.10 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=28.6
Q ss_pred CCCCCcCCCCCc-ccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 2 LGQDSSPGNGSC-KSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 2 ~~QpVtl~CGHs-FC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
+-.+|+++|||. ||..||.+. ..||+||.++..
T Consensus 35 ~~~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 35 NIAIVFVPCGHLVTCKQCAEAV------DKCPMCYTVITF 68 (75)
T ss_dssp CCCBCCSSSCCCCBCHHHHHHC------SBCTTTCCBCCC
T ss_pred CCCEEEecCCCHHHHHHHhhCC------CCCccCCceecC
Confidence 457899999999 999999753 579999999986
No 57
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.47 E-value=2.8e-08 Score=70.65 Aligned_cols=32 Identities=19% Similarity=0.413 Sum_probs=28.3
Q ss_pred CCCCcCCCCCc-ccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 3 GQDSSPGNGSC-KSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 3 ~QpVtl~CGHs-FC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
-.+|.++|||. ||..|+.+|+ .||+||.++..
T Consensus 29 ~~~v~~pCgH~~~C~~C~~~~~------~CP~Cr~~i~~ 61 (79)
T 2yho_A 29 INSTFCPCGHTVCCESCAAQLQ------SCPVCRSRVEH 61 (79)
T ss_dssp CCEEEETTCBCCBCHHHHTTCS------BCTTTCCBCCE
T ss_pred CcEEEECCCCHHHHHHHHHhcC------cCCCCCchhhC
Confidence 35788999999 9999999972 79999999995
No 58
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.46 E-value=5.5e-08 Score=73.33 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=28.1
Q ss_pred CcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 6 SSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 6 Vtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
+.++|||.|+..||.+|... ..+||+||++|..
T Consensus 69 ~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 69 AWGVCNHAFHFHCISRWLKT--RQVCPLDNREWEF 101 (106)
T ss_dssp EEETTSCEEEHHHHHHHHTT--CSBCSSSCSBCCE
T ss_pred eecccCcEECHHHHHHHHHc--CCcCcCCCCccee
Confidence 45799999999999999654 4799999999863
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.40 E-value=5.2e-08 Score=66.30 Aligned_cols=34 Identities=21% Similarity=0.430 Sum_probs=28.4
Q ss_pred CCcC--CCCCc-ccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 5 DSSP--GNGSC-KSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 5 pVtl--~CGHs-FC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
++.+ +|||. ||..|+.+|+... ..||+||+++..
T Consensus 20 ~~~~~~pCgH~~~C~~C~~~~~~~~--~~CPiCR~~i~~ 56 (63)
T 2vje_B 20 GNIIHGRTGHLVTCFHCARRLKKAG--ASCPICKKEIQL 56 (63)
T ss_dssp EEEEETTEEEEEECHHHHHHHHHTT--CBCTTTCCBCCE
T ss_pred eEEEecCCCCHhHHHHHHHHHHHhC--CcCCCcCchhhc
Confidence 3556 99998 9999999987543 689999999985
No 60
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.32 E-value=1.3e-07 Score=64.58 Aligned_cols=35 Identities=20% Similarity=0.498 Sum_probs=28.7
Q ss_pred CCCcC--CCCCc-ccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 4 QDSSP--GNGSC-KSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 4 QpVtl--~CGHs-FC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
+++.+ +|||. ||..|+.+|+... ..||+||+++..
T Consensus 20 ~~~~~~~pCgH~~~C~~C~~~~~~~~--~~CPiCR~~i~~ 57 (64)
T 2vje_A 20 NGCIVHGKTGHLMACFTCAKKLKKRN--KPCPVCRQPIQM 57 (64)
T ss_dssp CEEEEETTEEEEEECHHHHHHHHHTT--CCCTTTCCCCCE
T ss_pred CEEEECCCCCChhhHHHHHHHHHHcC--CcCCCcCcchhc
Confidence 34555 99999 8999999987543 689999999975
No 61
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.28 E-value=9.6e-08 Score=73.80 Aligned_cols=32 Identities=25% Similarity=0.453 Sum_probs=0.0
Q ss_pred cCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 7 SPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 7 tl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
.++|||.|+..||.+|... ..+||+|+++|..
T Consensus 81 ~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 81 WGVCNHAFHFHCISRWLKT--RQVCPLDNREWEF 112 (117)
T ss_dssp ----------------------------------
T ss_pred cCCcCceEcHHHHHHHHHc--CCcCCCCCCeeee
Confidence 3589999999999999654 3689999999864
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.21 E-value=1e-07 Score=68.31 Aligned_cols=30 Identities=13% Similarity=0.398 Sum_probs=24.1
Q ss_pred CCCCcccHHhHHhhhccC------CCCCCCC--CCCCC
Q 029308 9 GNGSCKSATCILRWASYV------RNPTCPQ--CKHPF 38 (195)
Q Consensus 9 ~CGHsFC~~CI~rW~e~k------q~~sCP~--CK~pF 38 (195)
+|||+||..||.++++.+ ....||. |+..+
T Consensus 25 ~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 25 QCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp TTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 799999999999976531 2348999 99983
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=1.2e-06 Score=60.66 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=27.5
Q ss_pred CCCCcCCCCCc-ccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 3 GQDSSPGNGSC-KSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 3 ~QpVtl~CGHs-FC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
-++|.++|||. ||..|+... ..||+||+++..
T Consensus 26 ~~~v~~pCgH~~~C~~C~~~~------~~CP~CR~~i~~ 58 (68)
T 2ea5_A 26 VNWVLLPCRHTCLCDGCVKYF------QQCPMCRQFVQE 58 (68)
T ss_dssp CCCEETTTTBCCSCTTHHHHC------SSCTTTCCCCCC
T ss_pred CCEEEECCCChhhhHHHHhcC------CCCCCCCcchhc
Confidence 35788999999 999999852 479999999986
No 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=1.6e-06 Score=62.42 Aligned_cols=38 Identities=16% Similarity=0.339 Sum_probs=31.9
Q ss_pred CCCCcCCCC-----CcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 3 GQDSSPGNG-----SCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 3 ~QpVtl~CG-----HsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
+.++.++|. |.|...||.+|.......+||+||.+|..
T Consensus 28 ~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 28 ESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp SSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 456778996 99999999999876555699999999985
No 65
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.03 E-value=1.7e-06 Score=66.66 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=30.1
Q ss_pred CcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCcCc
Q 029308 6 SSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEFLH 42 (195)
Q Consensus 6 Vtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~l~ 42 (195)
.+++|.|.||.+|+..|++. ...+||.|+.++..+.
T Consensus 16 RmIPCkHvFCydCa~~~~~~-~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 16 RMIPCKHVFCYDCAILHEKK-GDKMCPGCSDPVQRIE 51 (101)
T ss_dssp EEETTCCEEEHHHHHHHHHT-TCCBCTTTCCBCSEEE
T ss_pred eeccccccHHHHHHHHHHhc-cCCCCcCcCCeeeeeE
Confidence 46899999999999998654 3468999999999643
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.88 E-value=3.9e-06 Score=57.45 Aligned_cols=41 Identities=5% Similarity=0.028 Sum_probs=33.1
Q ss_pred CCCCCcC-CCCCcccHHhHHhhhccCCCCCCCCCCCCCCc--Cccc
Q 029308 2 LGQDSSP-GNGSCKSATCILRWASYVRNPTCPQCKHPFEF--LHVH 44 (195)
Q Consensus 2 ~~QpVtl-~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~--l~vN 44 (195)
+..||++ .|||.||+.||.+|.... .+||+++.++.. +.++
T Consensus 13 m~dPV~~~~sG~~yer~~I~~~l~~~--~~cP~t~~~L~~~~Lip~ 56 (61)
T 2bay_A 13 PRRPVLSPKSRTIFEKSLLEQYVKDT--GNDPITNEPLSIEEIVEI 56 (61)
T ss_dssp CSSEEEETTTTEEEEHHHHHHHHHHH--SBCTTTCCBCCGGGCEEC
T ss_pred CCCCEEeCCCCcEEcHHHHHHHHHhC--CCCcCCcCCCChhhcEEC
Confidence 4578888 999999999999997543 469999999985 4443
No 67
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.62 E-value=3.2e-05 Score=55.53 Aligned_cols=32 Identities=19% Similarity=0.538 Sum_probs=27.9
Q ss_pred CCCCcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 9 GNGSCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 9 ~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
.|+|.|=..||.+|.......+||+|++++..
T Consensus 33 ~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 33 TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 79999999999999765545789999999885
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.19 E-value=0.00022 Score=48.70 Aligned_cols=37 Identities=22% Similarity=0.586 Sum_probs=29.3
Q ss_pred CCCCcCCCC--C---cccHHhHHhhhccCCCCCCCCCCCCCC
Q 029308 3 GQDSSPGNG--S---CKSATCILRWASYVRNPTCPQCKHPFE 39 (195)
Q Consensus 3 ~QpVtl~CG--H---sFC~~CI~rW~e~kq~~sCP~CK~pFs 39 (195)
+++...+|. | .|=..||.+|...+.+.+||+|+.+|.
T Consensus 17 ~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 17 GNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 345567754 4 899999999976655679999999986
No 69
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.82 E-value=0.036 Score=39.46 Aligned_cols=20 Identities=5% Similarity=-0.031 Sum_probs=17.2
Q ss_pred CCCCc--CCCCCcccHHhHHhh
Q 029308 3 GQDSS--PGNGSCKSATCILRW 22 (195)
Q Consensus 3 ~QpVt--l~CGHsFC~~CI~rW 22 (195)
-.||+ +.|+|+||..||..+
T Consensus 15 ~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 15 QDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CBCCEEETTTTEEECHHHHHHH
T ss_pred CCceEECCcCChHHhHHHCHHH
Confidence 35777 999999999999983
No 70
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=85.32 E-value=0.16 Score=36.01 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=13.3
Q ss_pred CCCCcccHHhHHhh
Q 029308 9 GNGSCKSATCILRW 22 (195)
Q Consensus 9 ~CGHsFC~~CI~rW 22 (195)
.|||.||+.|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 79999999999998
No 71
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=85.18 E-value=0.32 Score=37.36 Aligned_cols=30 Identities=27% Similarity=0.513 Sum_probs=24.2
Q ss_pred CCCCcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 9 GNGSCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 9 ~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
...|.+|..|+.-.... +..||+|+++...
T Consensus 44 C~dHYLCl~CLtlmL~~--SdrCpIC~~pLPt 73 (99)
T 2ko5_A 44 CNNHYLCLNCLTLLLSV--SNRCPICKMPLPT 73 (99)
T ss_dssp CSSCEEEHHHHHHTCSS--SSEETTTTEECCC
T ss_pred ecchhhHHHHHHHHHhh--ccCCcccCCcCCc
Confidence 45799999999996433 3579999999885
No 72
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=83.11 E-value=0.83 Score=41.58 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=22.9
Q ss_pred CCCCCcccHHh--HHhhhccCCCCCCCCCCCCCCc
Q 029308 8 PGNGSCKSATC--ILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 8 l~CGHsFC~~C--I~rW~e~kq~~sCP~CK~pFs~ 40 (195)
..|.|.-|++- ++..........||+|.+.+..
T Consensus 266 ~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 266 INCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp TTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred CcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 56999977654 4444444445689999998874
No 73
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=78.70 E-value=0.19 Score=35.82 Aligned_cols=25 Identities=16% Similarity=0.391 Sum_probs=18.0
Q ss_pred CCCCcccHHhHHhhhccCCCCCCCC
Q 029308 9 GNGSCKSATCILRWASYVRNPTCPQ 33 (195)
Q Consensus 9 ~CGHsFC~~CI~rW~e~kq~~sCP~ 33 (195)
.|||.||+.|-..|-+...+.+|.+
T Consensus 48 ~C~~~FC~~C~~~w~~~H~~~sC~~ 72 (86)
T 2ct7_A 48 QCHQTFCVRCKRQWEEQHRGRSCED 72 (86)
T ss_dssp TTCCEECSSSCSBCCTTTTTSCHHH
T ss_pred CCCCccccccCCchhhcCCCCChHH
Confidence 4999999999999844434446643
No 74
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=78.65 E-value=0.85 Score=46.06 Aligned_cols=55 Identities=11% Similarity=0.074 Sum_probs=46.8
Q ss_pred CCCCCcCCCC-CcccHHhHHhhhccCCCCCCCCCCCCCCc--Cccccccccchhhhhhhh
Q 029308 2 LGQDSSPGNG-SCKSATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSISDYMFEE 58 (195)
Q Consensus 2 ~~QpVtl~CG-HsFC~~CI~rW~e~kq~~sCP~CK~pFs~--l~vNr~LdG~vedy~~Ee 58 (195)
.-.||+++-| +.|=+.+|.+|... ..+||.=+.+.+. +.+|..|...|+++..+.
T Consensus 901 M~DPVilpsG~~TydR~~I~~wl~~--~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~ 958 (968)
T 3m62_A 901 MKDPVILPASKMNIDRSTIKAHLLS--DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQK 958 (968)
T ss_dssp CSSEEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred HhCCeEcCCCCEEECHHHHHHHHhc--CCCCCCCCCCCCcccccccHHHHHHHHHHHHHH
Confidence 4579999998 59999999999654 4699999999985 889999999999887653
No 75
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=72.91 E-value=1.1 Score=34.55 Aligned_cols=11 Identities=18% Similarity=0.676 Sum_probs=9.8
Q ss_pred cccHHhHHhhh
Q 029308 13 CKSATCILRWA 23 (195)
Q Consensus 13 sFC~~CI~rW~ 23 (195)
-||+.|+.+|.
T Consensus 41 GFCRNCLskWy 51 (104)
T 3fyb_A 41 DFCRNCLAKWL 51 (104)
T ss_dssp SCCHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 39999999995
No 76
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=72.78 E-value=1.1 Score=34.58 Aligned_cols=11 Identities=18% Similarity=0.582 Sum_probs=9.8
Q ss_pred cccHHhHHhhh
Q 029308 13 CKSATCILRWA 23 (195)
Q Consensus 13 sFC~~CI~rW~ 23 (195)
-||+.|+.+|.
T Consensus 42 GFCRNCLskWy 52 (105)
T 2o35_A 42 GFCRNCLSNWY 52 (105)
T ss_dssp SCCHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 39999999995
No 77
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=70.09 E-value=3.4 Score=31.36 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=23.3
Q ss_pred CCCCcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 9 GNGSCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 9 ~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
.|+-..|+.|..-=. ...+..||+||.++..
T Consensus 40 eC~FPvCrpCyEYEr-keG~q~CpqCktrYkr 70 (93)
T 1weo_A 40 ECGFPACRPCYEYER-REGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCCCCCHHHHHHHH-HTSCSSCTTTCCCCCC
T ss_pred ccCChhhHHHHHHHH-hccCccccccCCcccc
Confidence 578888999998621 2234689999999984
No 78
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=64.15 E-value=2.8 Score=32.23 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=18.4
Q ss_pred CcCCCCCcccHHhHHhhhccCCCCCCCCCCCCCCc
Q 029308 6 SSPGNGSCKSATCILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 6 Vtl~CGHsFC~~CI~rW~e~kq~~sCP~CK~pFs~ 40 (195)
.=.+||+.|+ .....+..||.|+...-.
T Consensus 69 ~C~~CG~~F~-------~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 69 QCRKCGFVFK-------AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp BBTTTCCBCC-------CCSSCCSSCSSSCCCCBC
T ss_pred ChhhCcCeec-------ccCCCCCCCcCCCCCccC
Confidence 3468999991 122334689999976553
No 79
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=47.70 E-value=9 Score=28.44 Aligned_cols=13 Identities=15% Similarity=0.485 Sum_probs=9.7
Q ss_pred CC-CCCCCCCCCCc
Q 029308 28 NP-TCPQCKHPFEF 40 (195)
Q Consensus 28 ~~-sCP~CK~pFs~ 40 (195)
.. .||.|..+...
T Consensus 89 ~~~~CP~Cgs~~~~ 102 (119)
T 2kdx_A 89 DYGVCEKCHSKNVI 102 (119)
T ss_dssp TTCCCSSSSSCCCE
T ss_pred CCCcCccccCCCcE
Confidence 35 79999988553
No 80
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=43.97 E-value=3.7 Score=27.85 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=12.4
Q ss_pred CCCcccHHhHHhhhcc
Q 029308 10 NGSCKSATCILRWASY 25 (195)
Q Consensus 10 CGHsFC~~CI~rW~e~ 25 (195)
|+|.||..|...|...
T Consensus 32 C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 32 CKAEFCWVCLGPWEPH 47 (60)
T ss_dssp GGSCCSSSSCSCSGGG
T ss_pred cCCEEeeCcCCCcccC
Confidence 8888888888887543
No 81
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=43.62 E-value=12 Score=18.45 Aligned_cols=12 Identities=33% Similarity=1.016 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|+.|.+.|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 2m0e_A 3 HKCPHCDKKFNQ 14 (29)
T ss_dssp CCCSSCCCCCCT
T ss_pred CcCCCCCcccCC
Confidence 479999999985
No 82
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=43.11 E-value=16 Score=25.16 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=23.3
Q ss_pred cccHHhHHhhhccCCCCCCCCCCCCCCc---Ccccccccc
Q 029308 13 CKSATCILRWASYVRNPTCPQCKHPFEF---LHVHRSLDG 49 (195)
Q Consensus 13 sFC~~CI~rW~e~kq~~sCP~CK~pFs~---l~vNr~LdG 49 (195)
.+|+.|...+.+. ....||.|+..|-. +.+|-+|.+
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~ 54 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHS 54 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCS
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccC
Confidence 4688888876321 11469999999884 556655544
No 83
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=41.71 E-value=6.8 Score=24.43 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCc
Q 029308 28 NPTCPQCKHPFEF 40 (195)
Q Consensus 28 ~~sCP~CK~pFs~ 40 (195)
...||+|++.|..
T Consensus 5 GFiCP~C~~~l~s 17 (34)
T 3mjh_B 5 GFICPQCMKSLGS 17 (34)
T ss_dssp EEECTTTCCEESS
T ss_pred ccCCcHHHHHcCC
Confidence 3579999998885
No 84
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=41.64 E-value=12 Score=33.77 Aligned_cols=33 Identities=12% Similarity=0.190 Sum_probs=22.1
Q ss_pred CCCCCcccHHh--HHhhhccCCCCCCCCCCCCCCc
Q 029308 8 PGNGSCKSATC--ILRWASYVRNPTCPQCKHPFEF 40 (195)
Q Consensus 8 l~CGHsFC~~C--I~rW~e~kq~~sCP~CK~pFs~ 40 (195)
..|.|.-|++- ++..........||+|.+.+..
T Consensus 232 ~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 232 VTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp TTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred CCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 56999966653 3344444444689999998874
No 85
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=40.50 E-value=14 Score=18.44 Aligned_cols=12 Identities=25% Similarity=0.611 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|++|.+.|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 479999999985
No 86
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=38.48 E-value=17 Score=18.02 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|++|.+.|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 479999999985
No 87
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=37.14 E-value=14 Score=19.94 Aligned_cols=12 Identities=33% Similarity=0.922 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..||+|.+.|..
T Consensus 12 ~~C~~C~k~f~~ 23 (37)
T 1p7a_A 12 FQCPDCDRSFSR 23 (37)
T ss_dssp BCCTTTCCCBSS
T ss_pred ccCCCCCcccCc
Confidence 479999999985
No 88
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=36.95 E-value=14 Score=18.18 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|++|.+.|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 469999999985
No 89
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=36.63 E-value=9.7 Score=28.93 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=12.1
Q ss_pred CCCCcccHHhHHhh
Q 029308 9 GNGSCKSATCILRW 22 (195)
Q Consensus 9 ~CGHsFC~~CI~rW 22 (195)
.||+.||..|....
T Consensus 90 ~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 90 QCGNIFCAECSAKN 103 (125)
T ss_dssp TTCCEECGGGSCEE
T ss_pred CCCeEEChHHhCCc
Confidence 69999999998764
No 90
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=34.84 E-value=18 Score=18.16 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|++|.+.|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 479999999985
No 91
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=33.16 E-value=12 Score=25.64 Aligned_cols=13 Identities=8% Similarity=-0.069 Sum_probs=11.4
Q ss_pred CCCCcccHHhHHh
Q 029308 9 GNGSCKSATCILR 21 (195)
Q Consensus 9 ~CGHsFC~~CI~r 21 (195)
.||+.||..|...
T Consensus 32 ~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 32 SCGGVFCQEHSSN 44 (73)
T ss_dssp TTCCEECGGGSCE
T ss_pred CCCEEEcccccCC
Confidence 5999999999765
No 92
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.76 E-value=19 Score=19.05 Aligned_cols=12 Identities=25% Similarity=0.645 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|++|.+.|..
T Consensus 10 ~~C~~C~k~f~~ 21 (36)
T 2elr_A 10 HLCDMCGKKFKS 21 (36)
T ss_dssp CBCTTTCCBCSS
T ss_pred eecCcCCCCcCc
Confidence 579999999985
No 93
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X
Probab=32.55 E-value=11 Score=30.81 Aligned_cols=12 Identities=42% Similarity=1.140 Sum_probs=9.9
Q ss_pred ccccCCCccccc
Q 029308 113 RRWGDNGYVRAG 124 (195)
Q Consensus 113 rr~g~ngyvr~g 124 (195)
..||++||++--
T Consensus 229 ~~WGe~GY~ri~ 240 (265)
T 2wbf_X 229 PYWGDEGYFKVD 240 (265)
T ss_dssp TTSTBTTEEEEE
T ss_pred CccCCCCEEEEE
Confidence 479999999864
No 94
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=32.33 E-value=32 Score=27.16 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=20.3
Q ss_pred CCCCcccHHhHHhhh------c---cCCCCCCCCCCC
Q 029308 9 GNGSCKSATCILRWA------S---YVRNPTCPQCKH 36 (195)
Q Consensus 9 ~CGHsFC~~CI~rW~------e---~kq~~sCP~CK~ 36 (195)
.|--+||..||..-- + ...+..||+|..
T Consensus 80 ~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 80 FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 688999999999521 1 234457999974
No 95
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=31.79 E-value=13 Score=26.59 Aligned_cols=14 Identities=21% Similarity=0.271 Sum_probs=12.4
Q ss_pred CCCCcccHHhHHhh
Q 029308 9 GNGSCKSATCILRW 22 (195)
Q Consensus 9 ~CGHsFC~~CI~rW 22 (195)
.||+.||..|....
T Consensus 41 ~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 41 ACGKVFCGVCCNRK 54 (90)
T ss_dssp TTCCEECGGGSCEE
T ss_pred CCCCEECCcccCCe
Confidence 69999999998875
No 96
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=31.51 E-value=5.6 Score=24.21 Aligned_cols=20 Identities=30% Similarity=0.743 Sum_probs=14.4
Q ss_pred CCCCCCCCCCcCcccccccc
Q 029308 30 TCPQCKHPFEFLHVHRSLDG 49 (195)
Q Consensus 30 sCP~CK~pFs~l~vNr~LdG 49 (195)
.||+|.+....-.+|.-|+.
T Consensus 8 qcpvcqq~mpaahin~hldr 27 (29)
T 3vhs_A 8 QCPVCQQMMPAAHINSHLDR 27 (29)
T ss_dssp ECTTTCCEEEGGGHHHHHHH
T ss_pred eChHHHHhCcHHHHHHHHhc
Confidence 69999988776666655543
No 97
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...
Probab=31.44 E-value=12 Score=29.90 Aligned_cols=13 Identities=54% Similarity=1.308 Sum_probs=10.8
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
..||++||++--|
T Consensus 179 ~~WGe~Gy~~i~~ 191 (212)
T 2cio_A 179 TGWGENGYIRIKR 191 (212)
T ss_dssp TTSTBTTEEEEEC
T ss_pred CCcccCcEEEEEc
Confidence 5899999998654
No 98
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=31.43 E-value=13 Score=28.00 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=15.4
Q ss_pred CCcccHHhHHhhhcc---CCCCCCCC
Q 029308 11 GSCKSATCILRWASY---VRNPTCPQ 33 (195)
Q Consensus 11 GHsFC~~CI~rW~e~---kq~~sCP~ 33 (195)
+|.||+-|-...-+. .....||.
T Consensus 38 ~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 38 SHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp SCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CCeeeccccHHHHHhcCCCCcEECCC
Confidence 899999998875432 12235765
No 99
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...
Probab=31.09 E-value=12 Score=29.60 Aligned_cols=13 Identities=38% Similarity=1.135 Sum_probs=10.4
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
..||++||++--|
T Consensus 186 ~~WG~~Gy~~i~r 198 (215)
T 3kwz_A 186 ENWGNKGYILMAR 198 (215)
T ss_dssp TTSTBTTEEEEES
T ss_pred cccccCCEEEEec
Confidence 5799999998643
No 100
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1
Probab=31.05 E-value=12 Score=29.80 Aligned_cols=13 Identities=38% Similarity=0.958 Sum_probs=10.5
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
..||++||++--|
T Consensus 185 ~~WGe~Gy~~i~r 197 (214)
T 1m6d_A 185 TDWGEKGYYYLHR 197 (214)
T ss_dssp TTSTBTTEEEEES
T ss_pred CCcccCcEEEEEc
Confidence 5799999998643
No 101
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=30.90 E-value=29 Score=27.02 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=20.1
Q ss_pred CCCCcccHHhHHh------hhcc---CCCCCCCCCCC
Q 029308 9 GNGSCKSATCILR------WASY---VRNPTCPQCKH 36 (195)
Q Consensus 9 ~CGHsFC~~CI~r------W~e~---kq~~sCP~CK~ 36 (195)
.|-..||..||.. ..+. ..+..|+.|.-
T Consensus 74 ~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 74 FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 6889999999996 2222 23457999954
No 102
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=30.63 E-value=24 Score=18.93 Aligned_cols=12 Identities=33% Similarity=0.833 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|++|.+.|..
T Consensus 3 ~~C~~C~k~F~~ 14 (33)
T 1rim_A 3 FACPECPKRFMR 14 (33)
T ss_dssp CCCSSSCCCCSS
T ss_pred ccCCCCCchhCC
Confidence 479999999985
No 103
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*
Probab=30.57 E-value=13 Score=29.74 Aligned_cols=13 Identities=54% Similarity=1.255 Sum_probs=10.8
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
..||++||++--|
T Consensus 177 ~~WGe~Gy~~i~~ 189 (208)
T 1o0e_A 177 RYWGEKGYIRMLR 189 (208)
T ss_dssp TTSTBTTEEEEEC
T ss_pred CcccCCcEEEEEc
Confidence 6899999998654
No 104
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ...
Probab=30.54 E-value=13 Score=29.58 Aligned_cols=13 Identities=38% Similarity=1.061 Sum_probs=10.6
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
..||++||++--|
T Consensus 189 ~~WG~~Gy~~i~~ 201 (218)
T 3ovx_A 189 HNFGEEGYIRMAR 201 (218)
T ss_dssp TTSTBTTEEEEEC
T ss_pred CccccCCEEEEec
Confidence 5799999998654
No 105
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1
Probab=30.51 E-value=13 Score=29.69 Aligned_cols=14 Identities=43% Similarity=1.111 Sum_probs=11.3
Q ss_pred ccccCCCccccccc
Q 029308 113 RRWGDNGYVRAGRQ 126 (195)
Q Consensus 113 rr~g~ngyvr~gr~ 126 (195)
..||++||++--|-
T Consensus 179 ~~WGe~Gy~~i~r~ 192 (213)
T 3ioq_A 179 TGWGEGGYIRIKRG 192 (213)
T ss_dssp TTSTBTTEEEEESS
T ss_pred CCcccCCeEEEEcC
Confidence 57999999987653
No 106
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*
Probab=30.49 E-value=13 Score=29.83 Aligned_cols=13 Identities=46% Similarity=1.242 Sum_probs=10.7
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
..||++||++--|
T Consensus 183 ~~WG~~Gy~~i~~ 195 (216)
T 1ppo_A 183 TAWGEKGYIRIKR 195 (216)
T ss_dssp SSSTBTTEEEEEC
T ss_pred CCcccCcEEEEEc
Confidence 5799999998654
No 107
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=36.12 E-value=11 Score=18.72 Aligned_cols=12 Identities=25% Similarity=0.611 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|++|.+.|..
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 479999999985
No 108
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*
Probab=29.82 E-value=13 Score=29.76 Aligned_cols=13 Identities=46% Similarity=1.199 Sum_probs=10.6
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
..||++||++--|
T Consensus 183 ~~WGe~Gy~~i~~ 195 (218)
T 1yal_A 183 PNWGEKGYMRLKR 195 (218)
T ss_dssp TTSTBTTEEEEEC
T ss_pred CCcccCcEEEEEC
Confidence 4799999998654
No 109
>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*
Probab=29.33 E-value=14 Score=29.54 Aligned_cols=13 Identities=46% Similarity=0.930 Sum_probs=10.6
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
..||++||++--|
T Consensus 194 ~~WGe~Gy~~i~r 206 (222)
T 3f5v_A 194 TNWGDNGYGYFAA 206 (222)
T ss_dssp TTSTBTTEEEEEC
T ss_pred CCcccCCEEEEEc
Confidence 5799999998654
No 110
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...
Probab=29.32 E-value=14 Score=29.58 Aligned_cols=13 Identities=38% Similarity=1.076 Sum_probs=10.5
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
..||++||++--|
T Consensus 191 ~~WG~~Gy~~i~~ 203 (220)
T 2xu3_A 191 EEWGMGGYVKMAK 203 (220)
T ss_dssp TTSTBTTEEEEEC
T ss_pred CCcccCcEEEEec
Confidence 4799999998644
No 111
>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} SCOP: d.3.1.1 PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A
Probab=29.25 E-value=14 Score=29.56 Aligned_cols=13 Identities=46% Similarity=1.219 Sum_probs=10.6
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
..||++||++--|
T Consensus 186 ~~WGe~Gy~~i~r 198 (220)
T 3p5u_A 186 TTWGEEGYMRIQR 198 (220)
T ss_dssp TTSTBTTEEEEEC
T ss_pred CCcccCCEEEEEC
Confidence 4799999998754
No 112
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=28.99 E-value=15 Score=28.14 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=16.1
Q ss_pred CCCCcccHHhHHhhhccCCCCCCCCCC
Q 029308 9 GNGSCKSATCILRWASYVRNPTCPQCK 35 (195)
Q Consensus 9 ~CGHsFC~~CI~rW~e~kq~~sCP~CK 35 (195)
.||..||..|....... ...|-.|-
T Consensus 40 ~CG~ifC~~Cs~~~~~~--vRVC~~C~ 64 (120)
T 1y02_A 40 DCKKNFCMTCSSQVGNG--PRLCLLCQ 64 (120)
T ss_dssp TTCCEECGGGEEC------CCEEHHHH
T ss_pred CCCCeeCHHHhCCCCCC--ceECHHHH
Confidence 69999999998764322 23566664
No 113
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}
Probab=28.95 E-value=14 Score=29.61 Aligned_cols=14 Identities=43% Similarity=1.154 Sum_probs=11.2
Q ss_pred ccccCCCccccccc
Q 029308 113 RRWGDNGYVRAGRQ 126 (195)
Q Consensus 113 rr~g~ngyvr~gr~ 126 (195)
..||++||++--|-
T Consensus 179 ~~WGe~Gy~~i~~~ 192 (214)
T 2bdz_A 179 PNWGEKGYIRIKRA 192 (214)
T ss_dssp TTSTBTTEEEEECC
T ss_pred CCcccCCEEEEEcC
Confidence 58999999987553
No 114
>2kj3_A Small S protein, HET-S; beta-solenoid, prion, amyloid fibril, parall sheets, hydrophobic core, salt bridges, asparagine ladders, helix; NMR {Podospora anserina} PDB: 2lbu_A* 2rnm_A
Probab=28.71 E-value=20 Score=26.36 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=17.9
Q ss_pred HHhhCCCceeeccccccCCCcccc
Q 029308 100 VYFRSSSSLRIGNRRWGDNGYVRA 123 (195)
Q Consensus 100 ~y~~~~~~~~ignrr~g~ngyvr~ 123 (195)
.--.++|.|-|||| ||+-||.-+
T Consensus 51 V~akG~s~VhIGn~-yGgk~f~~~ 73 (79)
T 2kj3_A 51 VVGKGESRVLIGNE-YGGKGFWDN 73 (79)
T ss_dssp EEEESSCEEEEEEE-ESSCSSCCC
T ss_pred EEecCCcEEEeccc-cCCcccccc
Confidence 34467789999995 899999754
No 115
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0
Probab=28.06 E-value=15 Score=29.22 Aligned_cols=13 Identities=31% Similarity=0.866 Sum_probs=10.6
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
..||++||++--|
T Consensus 193 ~~WG~~Gy~~i~~ 205 (224)
T 3f75_A 193 TGWGRDGYMYMAM 205 (224)
T ss_dssp TTSTBTTEEEEES
T ss_pred cchhhCCEEEEEc
Confidence 5799999998654
No 116
>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}
Probab=28.04 E-value=15 Score=32.72 Aligned_cols=13 Identities=54% Similarity=1.308 Sum_probs=10.5
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
-.||++||+|-=|
T Consensus 330 t~WGe~GY~rI~R 342 (363)
T 3tnx_A 330 TGWGENGYIRIKR 342 (363)
T ss_dssp TTSTBTTEEEEEC
T ss_pred CccccCcEEEEEc
Confidence 5799999998643
No 117
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*
Probab=28.02 E-value=15 Score=30.23 Aligned_cols=14 Identities=43% Similarity=1.073 Sum_probs=11.2
Q ss_pred ccccCCCccccccc
Q 029308 113 RRWGDNGYVRAGRQ 126 (195)
Q Consensus 113 rr~g~ngyvr~gr~ 126 (195)
..||++||++--|-
T Consensus 192 ~~WGe~Gy~~i~~~ 205 (246)
T 2b1m_A 192 EDWGIDGYIRIQRN 205 (246)
T ss_dssp TTSTBTTEEEEECC
T ss_pred CcccCCcEEEEEcC
Confidence 58999999987553
No 118
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...
Probab=28.02 E-value=15 Score=30.38 Aligned_cols=13 Identities=46% Similarity=1.096 Sum_probs=10.4
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
-.||++||++--|
T Consensus 229 ~~WGe~Gy~~i~r 241 (266)
T 3cbj_A 229 TDWGDNGFFKILR 241 (266)
T ss_dssp TTSTBTTEEEEEC
T ss_pred CccCCCCEEEEEc
Confidence 4799999998644
No 119
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*
Probab=28.01 E-value=15 Score=29.21 Aligned_cols=13 Identities=46% Similarity=0.963 Sum_probs=10.5
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
..||++||++--|
T Consensus 190 ~~WGe~Gy~~i~r 202 (220)
T 8pch_A 190 PQWGMNGYFLIER 202 (220)
T ss_dssp TTSTBTTEEEEEC
T ss_pred cCcccCCEEEEEc
Confidence 5799999997644
No 120
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1
Probab=27.93 E-value=15 Score=29.46 Aligned_cols=13 Identities=38% Similarity=1.143 Sum_probs=10.6
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
..||++||++--|
T Consensus 182 ~~WGe~Gy~~i~~ 194 (215)
T 1iwd_A 182 QNWGNQGYIWMER 194 (215)
T ss_dssp TTSTBTTEEEEEC
T ss_pred CCcCCCcEEEEEc
Confidence 4799999998654
No 121
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=27.93 E-value=14 Score=26.59 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=12.1
Q ss_pred CCCCcccHHhHHhh
Q 029308 9 GNGSCKSATCILRW 22 (195)
Q Consensus 9 ~CGHsFC~~CI~rW 22 (195)
.||+.||..|....
T Consensus 30 ~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 30 NCGRAFCNGCLSFS 43 (88)
T ss_dssp SSCCEEETTTSCEE
T ss_pred CCCCEEChhHcCCc
Confidence 69999999998764
No 122
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0
Probab=27.93 E-value=15 Score=29.46 Aligned_cols=13 Identities=38% Similarity=0.963 Sum_probs=10.8
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
..||++||++--|
T Consensus 187 ~~WGe~Gy~~i~r 199 (222)
T 3u8e_A 187 TEWGIDGYILIRR 199 (222)
T ss_dssp TTSTBTTEEEEEC
T ss_pred CCcccCCEEEEEc
Confidence 5799999998754
No 123
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...
Probab=27.84 E-value=15 Score=29.30 Aligned_cols=13 Identities=38% Similarity=1.288 Sum_probs=10.4
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
..||++||++--|
T Consensus 186 ~~WGe~Gy~~i~r 198 (215)
T 3i06_A 186 TQWGEEGYIRIAK 198 (215)
T ss_dssp TTSTBTTEEEEES
T ss_pred CCcccCceEEEec
Confidence 4799999998644
No 124
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1
Probab=27.66 E-value=15 Score=29.47 Aligned_cols=13 Identities=54% Similarity=1.431 Sum_probs=10.6
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
..||++||++--|
T Consensus 185 ~~WGe~Gy~~i~r 197 (221)
T 1cqd_A 185 KNWGESGYIRAER 197 (221)
T ss_dssp TTSTBTTEEEEEC
T ss_pred CCcccCCEEEEEc
Confidence 4799999998655
No 125
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1
Probab=27.13 E-value=16 Score=29.61 Aligned_cols=13 Identities=46% Similarity=1.260 Sum_probs=10.4
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
..||++||++--|
T Consensus 187 ~~WGe~Gy~~i~r 199 (229)
T 1s4v_A 187 PEWGEKGYIRMER 199 (229)
T ss_dssp TTSTBTTEEEEEC
T ss_pred CCccCCcEEEEEc
Confidence 4699999998654
No 126
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.44 E-value=17 Score=18.15 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|++|.+.|..
T Consensus 4 ~~C~~C~k~f~~ 15 (28)
T 2kvf_A 4 YSCSVCGKRFSL 15 (28)
T ss_dssp EECSSSCCEESC
T ss_pred ccCCCCCcccCC
Confidence 469999999985
No 127
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A
Probab=26.41 E-value=16 Score=29.72 Aligned_cols=13 Identities=23% Similarity=1.027 Sum_probs=10.4
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
-.||++||++--|
T Consensus 208 ~~WGe~Gy~~i~~ 220 (241)
T 2oul_A 208 QQWGERGFINIET 220 (241)
T ss_dssp TTSTBTTEEEEEE
T ss_pred CCcccCCEEEEEc
Confidence 4799999998644
No 128
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*
Probab=26.16 E-value=17 Score=29.71 Aligned_cols=13 Identities=31% Similarity=0.999 Sum_probs=10.5
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
..||++||++--|
T Consensus 210 ~~WGe~Gy~~i~~ 222 (243)
T 3bwk_A 210 SDWGEGGYINLET 222 (243)
T ss_dssp TTSTBTTEEEEEE
T ss_pred CCcCCCcEEEEEc
Confidence 4799999998644
No 129
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.03 E-value=14 Score=18.62 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|++|.+.|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2lvt_A 3 CQCVMCGKAFTQ 14 (29)
Confidence 479999999985
No 130
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A
Probab=25.97 E-value=17 Score=30.48 Aligned_cols=13 Identities=31% Similarity=0.928 Sum_probs=10.1
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
-.||++||++--|
T Consensus 239 ~~WGe~GY~~i~r 251 (277)
T 1deu_A 239 EPWGERGWLRIVT 251 (277)
T ss_dssp TTSTBTTEEEEEC
T ss_pred CccCCCcEEEEEc
Confidence 3699999997543
No 131
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.94 E-value=30 Score=18.99 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCCc
Q 029308 28 NPTCPQCKHPFEF 40 (195)
Q Consensus 28 ~~sCP~CK~pFs~ 40 (195)
+..|++|.+.|..
T Consensus 10 ~~~C~~C~k~f~~ 22 (42)
T 2yte_A 10 PYSCAECKETFSD 22 (42)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeECCCCCCccCC
Confidence 3589999999985
No 132
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=31.41 E-value=15 Score=18.45 Aligned_cols=12 Identities=25% Similarity=0.636 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|+.|.+.|..
T Consensus 4 ~~C~~C~k~f~~ 15 (30)
T 2lvr_A 4 YVCIHCQRQFAD 15 (30)
Confidence 479999999985
No 133
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}
Probab=25.25 E-value=18 Score=30.36 Aligned_cols=13 Identities=38% Similarity=1.211 Sum_probs=10.6
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
-.||++||++--|
T Consensus 192 ~~WGe~GY~ri~r 204 (262)
T 2fo5_A 192 PSWGEQGYIRVEK 204 (262)
T ss_dssp TTSTBTTEEEEES
T ss_pred CCCCCCeEEEEEc
Confidence 4799999998654
No 134
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=24.91 E-value=19 Score=17.93 Aligned_cols=12 Identities=33% Similarity=0.833 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|++|.+.|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 369999999985
No 135
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=24.72 E-value=35 Score=31.11 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=21.4
Q ss_pred CCCCcccHHhHHhhhc--------cCCCCCCCCCCCC
Q 029308 9 GNGSCKSATCILRWAS--------YVRNPTCPQCKHP 37 (195)
Q Consensus 9 ~CGHsFC~~CI~rW~e--------~kq~~sCP~CK~p 37 (195)
+|...||..||.+.-. ...+..|=+|.-.
T Consensus 112 ~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 112 DCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp TCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 7999999999998631 1234579999844
No 136
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A
Probab=24.29 E-value=20 Score=30.67 Aligned_cols=13 Identities=46% Similarity=1.096 Sum_probs=10.6
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
..||++||++--|
T Consensus 286 ~~WGe~GY~ri~r 298 (317)
T 3pbh_A 286 TDWGDNGFFKILR 298 (317)
T ss_dssp TTSTBTTEEEEEC
T ss_pred CCcCCCcEEEEEc
Confidence 5799999998644
No 137
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*
Probab=24.24 E-value=19 Score=31.12 Aligned_cols=14 Identities=43% Similarity=0.933 Sum_probs=11.2
Q ss_pred cccccCCCcccccc
Q 029308 112 NRRWGDNGYVRAGR 125 (195)
Q Consensus 112 nrr~g~ngyvr~gr 125 (195)
+..||++||++--|
T Consensus 283 G~~WGe~GY~~i~r 296 (325)
T 3hhi_A 283 NTEWGMDGYFLIRR 296 (325)
T ss_dssp CTTSTBTTEEEEEC
T ss_pred CCCcccCCEEEEEc
Confidence 46899999998654
No 138
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.01 E-value=20 Score=17.82 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|++|.+.|..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvh_A 4 FSCSLCPQRSRD 15 (27)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCcChhhCC
Confidence 479999999985
No 139
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1
Probab=23.78 E-value=19 Score=30.93 Aligned_cols=13 Identities=46% Similarity=1.242 Sum_probs=10.6
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
-.||++||++--|
T Consensus 289 ~~WGe~GY~~i~r 301 (322)
T 1pci_A 289 TAWGEKGYIRIKR 301 (322)
T ss_dssp SSSTBTTEEEEEC
T ss_pred CcccCCeEEEEEc
Confidence 4799999998654
No 140
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.41 E-value=39 Score=19.07 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCc
Q 029308 28 NPTCPQCKHPFEF 40 (195)
Q Consensus 28 ~~sCP~CK~pFs~ 40 (195)
...|++|.+.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2yti_A 12 PYKCNECGKVFTQ 24 (46)
T ss_dssp TTCCSSSCCCCSS
T ss_pred CeECCCCCcccCC
Confidence 3589999999985
No 141
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.30 E-value=37 Score=18.80 Aligned_cols=12 Identities=25% Similarity=0.697 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|++|.+.|..
T Consensus 13 ~~C~~C~k~f~~ 24 (44)
T 2en7_A 13 YVCNECGKAFRS 24 (44)
T ss_dssp SCCTTTCCCCSS
T ss_pred eECCCCCCccCC
Confidence 579999999995
No 142
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.24 E-value=20 Score=25.79 Aligned_cols=12 Identities=25% Similarity=0.667 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..||+|..+...
T Consensus 48 ~~CPvCgs~l~~ 59 (112)
T 1l8d_A 48 GKCPVCGRELTD 59 (112)
T ss_dssp EECTTTCCEECH
T ss_pred CCCCCCCCcCCH
Confidence 479999998874
No 143
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.19 E-value=33 Score=18.82 Aligned_cols=12 Identities=33% Similarity=0.725 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|++|.+.|..
T Consensus 12 ~~C~~C~k~f~~ 23 (42)
T 2ytb_A 12 YRCDQCGKAFSQ 23 (42)
T ss_dssp BCCTTTTCCBSS
T ss_pred eeCCCccchhCC
Confidence 479999999985
No 144
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*
Probab=23.15 E-value=20 Score=30.66 Aligned_cols=13 Identities=38% Similarity=1.076 Sum_probs=10.4
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
-.||++||++--|
T Consensus 287 ~~WGe~GY~~i~r 299 (316)
T 1cs8_A 287 EEWGMGGYVKMAK 299 (316)
T ss_dssp TTSTBTTEEEEEC
T ss_pred CCcccCCEEEEEC
Confidence 4699999998644
No 145
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*
Probab=23.13 E-value=21 Score=29.21 Aligned_cols=13 Identities=54% Similarity=1.209 Sum_probs=10.6
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
..||++||++--|
T Consensus 225 ~~WG~~Gy~~i~r 237 (254)
T 3qsd_A 225 EDWGENGYFRIVR 237 (254)
T ss_dssp TTSTBTTEEEEEC
T ss_pred CCcccCCeEEEEc
Confidence 5899999998654
No 146
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A
Probab=23.11 E-value=20 Score=30.62 Aligned_cols=13 Identities=38% Similarity=1.135 Sum_probs=10.6
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
-.||++||++--|
T Consensus 285 ~~WGe~GY~~i~r 297 (314)
T 1by8_A 285 ENWGNKGYILMAR 297 (314)
T ss_dssp TTSTBTTEEEECC
T ss_pred CCcCcCCEEEEEc
Confidence 4799999998654
No 147
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.11 E-value=37 Score=19.35 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCc
Q 029308 28 NPTCPQCKHPFEF 40 (195)
Q Consensus 28 ~~sCP~CK~pFs~ 40 (195)
+..|++|.+.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eon_A 12 PYKCQVCGKAFRV 24 (46)
T ss_dssp SCBCSSSCCBCSS
T ss_pred ccCCCCCCcccCc
Confidence 3579999999995
No 148
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.92 E-value=22 Score=17.52 Aligned_cols=12 Identities=25% Similarity=0.711 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|++|.+.|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2m0f_A 3 LKCRECGKQFTT 14 (29)
T ss_dssp EECTTTSCEESC
T ss_pred ccCCCCCCccCC
Confidence 469999998874
No 149
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.80 E-value=40 Score=19.07 Aligned_cols=13 Identities=23% Similarity=0.644 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCc
Q 029308 28 NPTCPQCKHPFEF 40 (195)
Q Consensus 28 ~~sCP~CK~pFs~ 40 (195)
+..|++|.+.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eoh_A 12 PYECKECRKTFIQ 24 (46)
T ss_dssp SCCCSSSCCCCSS
T ss_pred CcCCCCcCchhCC
Confidence 3589999999985
No 150
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}
Probab=22.76 E-value=21 Score=30.49 Aligned_cols=13 Identities=46% Similarity=1.135 Sum_probs=10.6
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
-.||++||++--|
T Consensus 277 ~~WGe~GY~~i~r 289 (310)
T 2o6x_A 277 LSWGERGYIRMVR 289 (310)
T ss_dssp TTSTBTTEEEEEC
T ss_pred CccCCCcEEEEEc
Confidence 4799999998654
No 151
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}
Probab=22.63 E-value=21 Score=29.86 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=11.4
Q ss_pred ccccCCCcccccccc
Q 029308 113 RRWGDNGYVRAGRQE 127 (195)
Q Consensus 113 rr~g~ngyvr~gr~~ 127 (195)
..||++||++--|..
T Consensus 259 ~~WG~~Gy~~i~~~~ 273 (291)
T 3ois_A 259 NNVGEDGYFWMPYEY 273 (291)
T ss_dssp TTSTBTTEEEEEHHH
T ss_pred CCCCCCcEEEEEHHH
Confidence 469999999876543
No 152
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.50 E-value=21 Score=19.15 Aligned_cols=12 Identities=33% Similarity=0.916 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|++|.+.|..
T Consensus 10 ~~C~~C~k~f~~ 21 (37)
T 2elo_A 10 YSCPVCEKSFSE 21 (37)
T ss_dssp CEETTTTEECSS
T ss_pred cCCCCCCCccCC
Confidence 579999999985
No 153
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.33 E-value=39 Score=19.07 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCc
Q 029308 28 NPTCPQCKHPFEF 40 (195)
Q Consensus 28 ~~sCP~CK~pFs~ 40 (195)
...|++|.+.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2enf_A 12 PYKCNECGKVFTQ 24 (46)
T ss_dssp SCBCSSSCCBCSS
T ss_pred CeECCCCCcccCC
Confidence 3589999999985
No 154
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1
Probab=22.30 E-value=22 Score=30.62 Aligned_cols=13 Identities=46% Similarity=0.930 Sum_probs=10.5
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
-.||++||++--|
T Consensus 274 ~~WGe~GY~~i~r 286 (312)
T 1xkg_A 274 TNWGDNGYGYFAA 286 (312)
T ss_dssp TTSTBTTEEEEEC
T ss_pred CcccCCcEEEEEc
Confidence 4799999998654
No 155
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}
Probab=22.18 E-value=22 Score=30.45 Aligned_cols=13 Identities=38% Similarity=1.061 Sum_probs=10.4
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
-.||++||++--|
T Consensus 286 ~~WGe~GY~~i~r 298 (315)
T 2c0y_A 286 HNFGEEGYIRMAR 298 (315)
T ss_dssp TTSTBTTEEEEEC
T ss_pred CCcCCCcEEEEEc
Confidence 4799999998644
No 156
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.05 E-value=38 Score=18.74 Aligned_cols=12 Identities=25% Similarity=0.628 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|++|.+.|..
T Consensus 12 ~~C~~C~k~f~~ 23 (42)
T 2eos_A 12 YPCEICGTRFRH 23 (42)
T ss_dssp BCCSSSCCCBSS
T ss_pred EECCCCCCccCC
Confidence 479999999985
No 157
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=21.97 E-value=42 Score=21.90 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=17.4
Q ss_pred CCCCCcccHH--hHHhhhccCCCCCCCCCCCCCC
Q 029308 8 PGNGSCKSAT--CILRWASYVRNPTCPQCKHPFE 39 (195)
Q Consensus 8 l~CGHsFC~~--CI~rW~e~kq~~sCP~CK~pFs 39 (195)
..||+.|=-. --+.|.+......||+|..+-.
T Consensus 8 ~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~k~ 41 (46)
T 6rxn_A 8 NVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVSKD 41 (46)
T ss_dssp TTTCCEECGGGGTTCCGGGSCTTCBCTTTCCBGG
T ss_pred CCCCeEEeCCcCCCcchhhCCCCCcCcCCCCcHH
Confidence 3577766210 0033544444458999998644
No 158
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.96 E-value=44 Score=18.70 Aligned_cols=13 Identities=23% Similarity=0.756 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCc
Q 029308 28 NPTCPQCKHPFEF 40 (195)
Q Consensus 28 ~~sCP~CK~pFs~ 40 (195)
...|++|.+.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (44)
T 2eou_A 12 TSECQECGKIFRH 24 (44)
T ss_dssp CCCCTTTCCCCSS
T ss_pred CeECCCCCcccCC
Confidence 3579999999985
No 159
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0
Probab=21.95 E-value=22 Score=30.74 Aligned_cols=13 Identities=38% Similarity=1.007 Sum_probs=10.5
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
-.||++||++--|
T Consensus 302 ~~WGe~GY~~i~r 314 (331)
T 3qj3_A 302 DGWGLDGYFKIAR 314 (331)
T ss_dssp TTSTBTTEEEEEC
T ss_pred CCcCCCCEEEEEc
Confidence 4799999998654
No 160
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.60 E-value=24 Score=18.67 Aligned_cols=12 Identities=33% Similarity=0.741 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|++|.+.|..
T Consensus 10 ~~C~~C~k~f~~ 21 (36)
T 2elt_A 10 YKCPQCSYASAI 21 (36)
T ss_dssp EECSSSSCEESS
T ss_pred CCCCCCCcccCC
Confidence 479999999985
No 161
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.57 E-value=42 Score=19.01 Aligned_cols=13 Identities=31% Similarity=0.649 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCc
Q 029308 28 NPTCPQCKHPFEF 40 (195)
Q Consensus 28 ~~sCP~CK~pFs~ 40 (195)
...|++|.+.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2en9_A 12 LFKCNECKKTFTQ 24 (46)
T ss_dssp CCBCTTTCCBCSS
T ss_pred CEECCccCcccCC
Confidence 3579999999985
No 162
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}
Probab=21.44 E-value=23 Score=30.73 Aligned_cols=13 Identities=46% Similarity=1.048 Sum_probs=10.6
Q ss_pred ccccCCCcccccc
Q 029308 113 RRWGDNGYVRAGR 125 (195)
Q Consensus 113 rr~g~ngyvr~gr 125 (195)
-.||++||++--|
T Consensus 300 ~~WGe~GY~~i~r 312 (329)
T 3qt4_A 300 SGWGESGYWRQVR 312 (329)
T ss_dssp TTSTBTTEEEEES
T ss_pred CcccCCcEEEEEe
Confidence 5799999998654
No 163
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.39 E-value=46 Score=18.75 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCc
Q 029308 28 NPTCPQCKHPFEF 40 (195)
Q Consensus 28 ~~sCP~CK~pFs~ 40 (195)
...|++|.+.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eq1_A 12 PYKCNECGKAFRA 24 (46)
T ss_dssp CCCCTTTTCCCSS
T ss_pred CeECCcCChhhCC
Confidence 3589999999985
No 164
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.31 E-value=44 Score=18.82 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCc
Q 029308 28 NPTCPQCKHPFEF 40 (195)
Q Consensus 28 ~~sCP~CK~pFs~ 40 (195)
...|++|.+.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eq2_A 12 PYQCNECGKAFSQ 24 (46)
T ss_dssp SSSCCSSCCCCSS
T ss_pred CeECCCCCcccCC
Confidence 3589999999995
No 165
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.29 E-value=24 Score=18.43 Aligned_cols=12 Identities=25% Similarity=0.523 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|++|.+.|..
T Consensus 8 ~~C~~C~k~f~~ 19 (35)
T 2elx_A 8 YVCALCLKKFVS 19 (35)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCcchhCC
Confidence 479999999985
No 166
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.27 E-value=42 Score=18.93 Aligned_cols=12 Identities=25% Similarity=0.700 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|++|.+.|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2emg_A 13 FICSECGKVFTH 24 (46)
T ss_dssp CBCTTTCCBCSS
T ss_pred EECCccCcccCC
Confidence 579999999985
No 167
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.03 E-value=46 Score=18.81 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCc
Q 029308 28 NPTCPQCKHPFEF 40 (195)
Q Consensus 28 ~~sCP~CK~pFs~ 40 (195)
...|++|.+.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2emz_A 12 PFKCNECGKGFGR 24 (46)
T ss_dssp SCCCSSSCCCCSS
T ss_pred CeECCCCCcccCC
Confidence 3589999999985
No 168
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=21.01 E-value=36 Score=27.57 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=20.3
Q ss_pred CCCCcccHHhHHhhhcc--------CCCCCCCCCCC
Q 029308 9 GNGSCKSATCILRWASY--------VRNPTCPQCKH 36 (195)
Q Consensus 9 ~CGHsFC~~CI~rW~e~--------kq~~sCP~CK~ 36 (195)
+|-..||..||...-.. ..+..|=+|.-
T Consensus 98 ~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 98 NCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 68899999999985321 22346999874
No 169
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=20.98 E-value=95 Score=18.94 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 029308 167 REAADKAAASKHQQHLARLG 186 (195)
Q Consensus 167 reaa~k~~~~kh~~~l~~~g 186 (195)
-||.+|...+|-+..|.+.|
T Consensus 11 leaenkqlkakveellakvg 30 (31)
T 1p9i_A 11 LEAENKQLKAKVEELLAKVG 30 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 47888999999999999887
No 170
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.94 E-value=46 Score=18.68 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCc
Q 029308 28 NPTCPQCKHPFEF 40 (195)
Q Consensus 28 ~~sCP~CK~pFs~ 40 (195)
...|++|.+.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ep1_A 12 PYECSDCGKSFIK 24 (46)
T ss_dssp SSCCSSSCCCCSS
T ss_pred CcCCCCCCchhCC
Confidence 3589999999985
No 171
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=20.92 E-value=22 Score=25.24 Aligned_cols=10 Identities=30% Similarity=0.962 Sum_probs=9.2
Q ss_pred CCCCCCCCCC
Q 029308 30 TCPQCKHPFE 39 (195)
Q Consensus 30 sCP~CK~pFs 39 (195)
.||+|+++|.
T Consensus 11 ~CP~Cgkp~~ 20 (68)
T 1lv3_A 11 NCPTCGKTVV 20 (68)
T ss_dssp ECTTTCCEEE
T ss_pred cCCCCCCccc
Confidence 6999999987
No 172
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.71 E-value=42 Score=18.98 Aligned_cols=13 Identities=23% Similarity=0.703 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCc
Q 029308 28 NPTCPQCKHPFEF 40 (195)
Q Consensus 28 ~~sCP~CK~pFs~ 40 (195)
...|++|.+.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2enh_A 12 PYECDVCRKAFSH 24 (46)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CcCCCCcCchhCC
Confidence 3579999999985
No 173
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=20.70 E-value=32 Score=18.16 Aligned_cols=12 Identities=33% Similarity=0.780 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|++|.+.|..
T Consensus 3 ~~C~~C~k~f~~ 14 (32)
T 2kfq_A 3 FACPACPKRFMR 14 (32)
T ss_dssp SSSSSSCTTHHH
T ss_pred CCCCCCCcccCC
Confidence 479999999884
No 174
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.61 E-value=17 Score=18.32 Aligned_cols=12 Identities=25% Similarity=0.609 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|++|.+.|..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvg_A 4 YRCPLCRAGCPS 15 (27)
T ss_dssp EEETTTTEEESC
T ss_pred cCCCCCCcccCC
Confidence 469999999885
No 175
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.38 E-value=26 Score=17.27 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=10.0
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|++|.+.|..
T Consensus 4 ~~C~~C~~~f~~ 15 (30)
T 2m0d_A 4 YQCDYCGRSFSD 15 (30)
T ss_dssp EECTTTCCEESC
T ss_pred ccCCCCCcccCC
Confidence 469999999885
No 176
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=20.21 E-value=47 Score=22.34 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=10.7
Q ss_pred ccCCCCCCCCCCCCCC
Q 029308 24 SYVRNPTCPQCKHPFE 39 (195)
Q Consensus 24 e~kq~~sCP~CK~pFs 39 (195)
.......||+|..+-.
T Consensus 32 ~lP~dw~CP~Cg~~K~ 47 (54)
T 4rxn_A 32 DIPDDWVCPLCGVGKD 47 (54)
T ss_dssp GSCTTCBCTTTCCBGG
T ss_pred HCCCCCcCcCCCCcHH
Confidence 3334457999998744
No 177
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.07 E-value=26 Score=18.65 Aligned_cols=12 Identities=42% Similarity=0.952 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|++|.+.|..
T Consensus 10 ~~C~~C~k~f~~ 21 (36)
T 2els_A 10 FTCEYCNKVFKF 21 (36)
T ss_dssp EECTTTCCEESS
T ss_pred EECCCCCceeCC
Confidence 479999999985
No 178
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.03 E-value=49 Score=18.79 Aligned_cols=12 Identities=25% Similarity=0.565 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCc
Q 029308 29 PTCPQCKHPFEF 40 (195)
Q Consensus 29 ~sCP~CK~pFs~ 40 (195)
..|++|.+.|..
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2eom_A 13 HRCSDCGKFFLQ 24 (46)
T ss_dssp CCCSSSCCCCSS
T ss_pred cCCCCCCCeeCC
Confidence 579999999985
Done!