BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029310
MASLQASLPSISAIWSSFPDSSSINSASIVTLTSSPANDRRIRRRLRCKAMVQQAVQGAP
AAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTPRPTT
SPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVVIKDGKANITANFKLLNS
VLSLDEFYMLTMWMI

High Scoring Gene Products

Symbol, full name Information P value
AT2G42130 protein from Arabidopsis thaliana 8.6e-56
PGL34
AT3G58010
protein from Arabidopsis thaliana 5.6e-52

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029310
        (195 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2060020 - symbol:AT2G42130 species:3702 "Arabi...   575  8.6e-56   1
TAIR|locus:2095803 - symbol:PGL34 "plastoglobulin 34kD" s...   539  5.6e-52   1


>TAIR|locus:2060020 [details] [associations]
            symbol:AT2G42130 species:3702 "Arabidopsis thaliana"
            [GO:0005198 "structural molecule activity" evidence=IEA]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IEA;IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0009534 "chloroplast
            thylakoid" evidence=IDA] [GO:0010027 "thylakoid membrane
            organization" evidence=RCA] [GO:0019288 "isopentenyl diphosphate
            biosynthetic process, mevalonate-independent pathway" evidence=RCA]
            InterPro:IPR006843 Pfam:PF04755 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0005198 EMBL:AC002561 GO:GO:0009534
            GO:GO:0010287 EMBL:AK117864 EMBL:AY074656 EMBL:AY219066
            EMBL:AY219067 EMBL:AY219068 EMBL:AY954828 IPI:IPI00517832
            IPI:IPI00527513 IPI:IPI00536233 IPI:IPI00547708 IPI:IPI00846213
            IPI:IPI00846900 PIR:T00923 RefSeq:NP_850362.1 RefSeq:NP_973666.1
            RefSeq:NP_973667.2 UniGene:At.37008 STRING:Q8S9M1 PaxDb:Q8S9M1
            PRIDE:Q8S9M1 EnsemblPlants:AT2G42130.4 GeneID:818813
            KEGG:ath:AT2G42130 GeneFarm:2866 TAIR:At2g42130 eggNOG:NOG269617
            HOGENOM:HOG000015186 InParanoid:Q8S9M1 OMA:FEWFGSG
            ProtClustDB:CLSN2684702 Genevestigator:Q8S9M1 Uniprot:Q8S9M1
        Length = 299

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 118/183 (64%), Positives = 134/183 (73%)

Query:     1 MASLQASLPSISAIWSSFPDSSSINSASIVTLTSSPANDRRIRRRLRCKAMVQQAVQGAP 60
             MA +  S+P  SA+   F  S+S +   +             RRR+  +AMVQ+ VQG+P
Sbjct:     1 MALIHGSVPGTSAVRLVFSTSASPSRFCLNVPVVKQGWKNSCRRRV-LRAMVQETVQGSP 59

Query:    61 AAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTPRPTT 120
               YA+EMERLSAKESLLLA KDAGGFEALV GKTTNMQ+IDVNERIT LERLNPTPRPTT
Sbjct:    60 LVYAREMERLSAKESLLLALKDAGGFEALVTGKTTNMQRIDVNERITSLERLNPTPRPTT 119

Query:   121 SPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVVIKDGKANITANFKLLNS 180
             SP  EGRWNFEWFGSGSPG   AR IFERFP TLANLS M+++IKD  A  TAN KLLNS
Sbjct:   120 SPCFEGRWNFEWFGSGSPGLLAARVIFERFPSTLANLSRMEILIKDANAKATANIKLLNS 179

Query:   181 VLS 183
             + S
Sbjct:   180 IES 182


>TAIR|locus:2095803 [details] [associations]
            symbol:PGL34 "plastoglobulin 34kD" species:3702
            "Arabidopsis thaliana" [GO:0005198 "structural molecule activity"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0009507 "chloroplast" evidence=ISM;IEA;IDA] [GO:0031977
            "thylakoid lumen" evidence=IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA]
            InterPro:IPR006843 Pfam:PF04755 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0005198 GO:GO:0009535 GO:GO:0010287
            GO:GO:0031977 EMBL:AL132977 eggNOG:NOG269617 HOGENOM:HOG000015186
            ProtClustDB:CLSN2684702 EMBL:BT001242 EMBL:AY128358 EMBL:AY085933
            IPI:IPI00523282 PIR:T46023 RefSeq:NP_191360.1 UniGene:At.43198
            UniGene:At.67843 STRING:Q9M2P7 PaxDb:Q9M2P7 PRIDE:Q9M2P7
            EnsemblPlants:AT3G58010.1 GeneID:824970 KEGG:ath:AT3G58010
            GeneFarm:2863 TAIR:At3g58010 InParanoid:Q9M2P7 OMA:MKEEYLE
            Genevestigator:Q9M2P7 Uniprot:Q9M2P7
        Length = 308

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 110/185 (59%), Positives = 138/185 (74%)

Query:     1 MASLQ-ASLPSISAIWSSFPDSSSINSAS--IVTLTSSPANDRR-IRRRLRCKAMVQQAV 56
             MA +Q  S+   SA+  SF  S S  S+S  +  ++ +  ++++   RR+ C+AMVQ +V
Sbjct:     1 MALIQHGSVSGTSAVRLSFSSSVSPPSSSPPLSRVSLNFQSEKKSCYRRMICRAMVQDSV 60

Query:    57 QGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTP 116
             QG P+ YA+EMERLSAKESL+LAF DAGGFEALV GK T+MQ+IDVNERIT LERLNPTP
Sbjct:    61 QGIPSVYAREMERLSAKESLILAFNDAGGFEALVTGKITDMQKIDVNERITNLERLNPTP 120

Query:   117 RPTTSPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVVIKDGKANITANFK 176
             RPTTSP+LEGRW+FEWFG  +PG    R +FERFP TL +LSNM++ IKD     TAN K
Sbjct:   121 RPTTSPYLEGRWSFEWFGVNTPGSLAVRVMFERFPSTLVSLSNMEIFIKDNNTKATANIK 180

Query:   177 LLNSV 181
             LLNS+
Sbjct:   181 LLNSI 185


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.131   0.385    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      195       195   0.00078  111 3  11 22  0.44    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  582 (62 KB)
  Total size of DFA:  155 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.77u 0.09s 19.86t   Elapsed:  00:00:01
  Total cpu time:  19.77u 0.09s 19.86t   Elapsed:  00:00:01
  Start:  Fri May 10 14:43:49 2013   End:  Fri May 10 14:43:50 2013

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