Query 029310
Match_columns 195
No_of_seqs 39 out of 41
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 10:51:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029310.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029310hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04755 PAP_fibrillin: PAP_fi 99.6 6.6E-15 1.4E-19 115.9 9.4 95 71-176 2-98 (198)
2 smart00096 UTG Uteroglobin. 72.2 10 0.00022 28.1 4.8 60 47-110 2-64 (69)
3 smart00550 Zalpha Z-DNA-bindin 67.4 6 0.00013 27.6 2.7 45 71-115 6-52 (68)
4 PF05015 Plasmid_killer: Plasm 57.9 11 0.00024 27.8 2.7 38 98-135 32-80 (93)
5 PF05973 Gp49: Phage derived p 49.3 54 0.0012 23.3 5.1 42 95-136 7-50 (91)
6 PF01099 Uteroglobin: Uteroglo 41.5 98 0.0021 21.6 5.3 56 50-109 6-61 (67)
7 PF08522 DUF1735: Domain of un 41.4 31 0.00067 24.5 2.8 43 148-190 28-71 (86)
8 PF09328 Phytochelatin_C: Doma 36.2 17 0.00037 33.1 1.0 35 52-86 65-99 (264)
9 PF02295 z-alpha: Adenosine de 35.5 32 0.00069 24.5 2.1 41 72-112 5-47 (66)
10 TIGR02683 upstrm_HI1419 probab 34.8 92 0.002 22.7 4.5 52 95-154 18-69 (95)
11 PF13619 KTSC: KTSC domain 34.3 33 0.00071 23.4 1.9 39 112-151 11-60 (60)
12 TIGR02094 more_P_ylases alpha- 25.5 1.5E+02 0.0034 28.9 5.5 50 90-151 394-448 (601)
13 KOG0214 RNA polymerase II, sec 23.8 41 0.00088 35.9 1.3 29 106-134 520-549 (1141)
14 TIGR00053 addiction module tox 23.5 91 0.002 22.0 2.7 28 100-127 26-53 (89)
15 PF13412 HTH_24: Winged helix- 22.8 94 0.002 19.5 2.4 40 73-112 5-44 (48)
16 PF03724 META: META domain; I 20.5 79 0.0017 22.0 1.9 15 122-136 1-15 (101)
No 1
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=99.59 E-value=6.6e-15 Score=115.89 Aligned_cols=95 Identities=25% Similarity=0.442 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHhccCcchhhcccCChhhHhHHHHHHHhhhhcCCCCCCCCC-CcccceeEEEEecCCCchHHHHHHHHH-
Q 029310 71 SAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTPRPTTS-PFLEGRWNFEWFGSGSPGFFVARFIFE- 148 (195)
Q Consensus 71 sAKesLL~Ai~Dagg~e~~v~g~~td~qridI~e~i~~LE~LNPTPrPttS-pLLeG~W~Lly~G~~SPG~~Aar~L~~- 148 (195)
.+|++||.+++ |.++|+. .++.||.+|+++|.+||++||||+|+++ ++|+|+|+|.|........ .|..
T Consensus 2 ~~K~~Ll~~~~---~~~rG~~--~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~----~l~~~ 72 (198)
T PF04755_consen 2 DLKQELLQAVA---GTNRGLR--ASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRS----LLQRG 72 (198)
T ss_pred hHHHHHHHHHh---ccCCCcc--CCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCccc----ccccc
Confidence 58999999999 8888887 5677899999999999999999999999 8999999999988665551 1222
Q ss_pred hccccccccCCceEEEeCCccceeeeeE
Q 029310 149 RFPPTLANLSNMDVVIKDGKANITANFK 176 (195)
Q Consensus 149 rfPs~la~l~~l~v~I~dg~~k~ta~~k 176 (195)
++|. +.++.+-=.|...+.+++-.++
T Consensus 73 ~~~~--~~~~~v~Q~id~~~~~~~N~v~ 98 (198)
T PF04755_consen 73 RLPG--VRVGRVFQTIDADNGRVENVVE 98 (198)
T ss_pred cccc--ccccceEEEEECCCceEEEEEE
Confidence 2333 4566666666444444444333
No 2
>smart00096 UTG Uteroglobin.
Probab=72.24 E-value=10 Score=28.07 Aligned_cols=60 Identities=13% Similarity=0.253 Sum_probs=50.8
Q ss_pred HHHHHHHHHh---hCChhHHHHHHhhhhHHHHHHHHHHhccCcchhhcccCChhhHhHHHHHHHhhh
Q 029310 47 RCKAMVQQAV---QGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLE 110 (195)
Q Consensus 47 ~c~a~vq~~~---~g~~a~ya~emerlsAKesLL~Ai~Dagg~e~~v~g~~td~qridI~e~i~~LE 110 (195)
.|.|+++... -|.|..|--.++.-.+-.++++|-+ .+...|-+ .++.+|.-|...|.+..
T Consensus 2 iCPa~~~~v~~fl~gt~~~Y~~~l~~y~~~~~~~ea~~---~lK~cvD~-L~~~~k~~i~~ll~kI~ 64 (69)
T smart00096 2 ICPGFKRVIELLLLGTPSSYEASLKQFKPDPDMLEAGR---QLKKLVDT-LPQETRENILKLTEKIY 64 (69)
T ss_pred CChHHHHHHHHHHcCCHHHHHHHHHhcCCCHHHHHHHH---HHHHHHhc-CCHHHHHHHHHHHHHHH
Confidence 5888766544 4999999999999999999999988 88888888 99999999877776654
No 3
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=67.44 E-value=6 Score=27.64 Aligned_cols=45 Identities=24% Similarity=0.331 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHhccC--cchhhcccCChhhHhHHHHHHHhhhhcCCC
Q 029310 71 SAKESLLLAFKDAGG--FEALVAGKTTNMQQIDVNERITGLERLNPT 115 (195)
Q Consensus 71 sAKesLL~Ai~Dagg--~e~~v~g~~td~qridI~e~i~~LE~LNPT 115 (195)
.-++.+|..+++.|+ +-+.--++.-...+..|+..+..||+..=-
T Consensus 6 ~~~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V 52 (68)
T smart00550 6 SLEEKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGKV 52 (68)
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 346889999999998 888888888889999999999999987654
No 4
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=57.85 E-value=11 Score=27.82 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=24.6
Q ss_pred hHhHHHHHHHhhhhcCCCCCCCCCC-----------cccceeEEEEecC
Q 029310 98 QQIDVNERITGLERLNPTPRPTTSP-----------FLEGRWNFEWFGS 135 (195)
Q Consensus 98 qridI~e~i~~LE~LNPTPrPttSp-----------LLeG~W~Lly~G~ 135 (195)
.|.+++.++..+|+|+.-|..---+ =++|+|++.|--.
T Consensus 32 ~~L~~L~aa~~~~dl~~~p~~r~h~L~G~~~g~~Si~i~~~~RliF~~~ 80 (93)
T PF05015_consen 32 RRLDQLDAATSLEDLRSPPSNRLHKLKGDRKGQWSIRINGNWRLIFRFE 80 (93)
T ss_pred HHHHHHHhCCCHHHHhcCcCCCcccccCCCCCcEEEEeCCCEEEEEEEe
Confidence 5667777777888887765322222 3678888877543
No 5
>PF05973 Gp49: Phage derived protein Gp49-like (DUF891); InterPro: IPR009241 This entry consists of several hypothetical viral and bacterial proteins some are annotated as addiction module killer proteins.
Probab=49.29 E-value=54 Score=23.26 Aligned_cols=42 Identities=12% Similarity=0.241 Sum_probs=29.9
Q ss_pred ChhhHhHHHHHHHhhhhcCCCCCC-CCCCcc-cceeEEEEecCC
Q 029310 95 TNMQQIDVNERITGLERLNPTPRP-TTSPFL-EGRWNFEWFGSG 136 (195)
Q Consensus 95 td~qridI~e~i~~LE~LNPTPrP-ttSpLL-eG~W~Lly~G~~ 136 (195)
++.++.+|...+..||...|...+ ..-.+= +|-|||...+++
T Consensus 7 ~~~~~~~i~~~l~~l~~~G~~l~~~~~k~l~~~~i~ElR~~~~~ 50 (91)
T PF05973_consen 7 PDKERAKILAQLERLEEHGPSLGEPLFKHLKGDGIYELRVRGGS 50 (91)
T ss_pred CHHHHHHHHHHHHHHHhcCCccCCCcccccCcCCeEEEEEeecC
Confidence 456678888899999888854433 333344 699999987765
No 6
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=41.52 E-value=98 Score=21.64 Aligned_cols=56 Identities=14% Similarity=0.258 Sum_probs=43.2
Q ss_pred HHHHHHhhCChhHHHHHHhhhhHHHHHHHHHHhccCcchhhcccCChhhHhHHHHHHHhh
Q 029310 50 AMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGL 109 (195)
Q Consensus 50 a~vq~~~~g~~a~ya~emerlsAKesLL~Ai~Dagg~e~~v~g~~td~qridI~e~i~~L 109 (195)
.+++.+-.|++..|-..+++..+=++.++|.+ .+..-+- +.++.+|..|...+.+.
T Consensus 6 ~~v~~~l~~s~~~Y~~~l~~y~~~~~~~~A~~---~lK~C~d-~ls~e~~~~i~~~l~~I 61 (67)
T PF01099_consen 6 DVVTKFLFGSPEEYKESLQKYNPPPEAVEAKL---ELKQCVD-KLSNETRENILKLLEKI 61 (67)
T ss_dssp HHHHHHHHS-HHHHHHHHHCC---HHHHHHHH---HHHHHHT-TS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHhcCCCHHHHHHHH---HHHHHHH-hCCHHHHHHHHHHHHHH
Confidence 45667778999999999999999999999999 8888888 89999999987766554
No 7
>PF08522 DUF1735: Domain of unknown function (DUF1735); InterPro: IPR013728 This domain of unknown function is found in a number of bacterial proteins including acylhydrolases.; PDB: 3POH_A 4DQA_A 3SOT_D 3NQK_A 3N91_A 3P02_A.
Probab=41.43 E-value=31 Score=24.51 Aligned_cols=43 Identities=28% Similarity=0.378 Sum_probs=31.7
Q ss_pred HhccccccccCCceEEEeCCccceeeeeEeecc-cccchhhhhh
Q 029310 148 ERFPPTLANLSNMDVVIKDGKANITANFKLLNS-VLSLDEFYML 190 (195)
Q Consensus 148 ~rfPs~la~l~~l~v~I~dg~~k~ta~~kll~s-~es~~~~~~~ 190 (195)
+-+|+....|.+.++.|+-|..+.+..++|-.. -...+.=|+|
T Consensus 28 ~~LP~~~y~l~~~~~~i~aG~~~s~~~i~~~~~~~l~~~~~Y~L 71 (86)
T PF08522_consen 28 ELLPADYYTLPNKTVTIPAGETYSTVKITFKPDEKLDPDKKYVL 71 (86)
T ss_dssp EE--GGGEEESSSEEEEETTCSEEEEEEEEEHTSTCGTTSEEEE
T ss_pred EECCHHHEEEcCCEEEEcCCCEEEEEEEEEEeCcCCCCCCEEEE
Confidence 568999999999999999999988888888777 3333344443
No 8
>PF09328 Phytochelatin_C: Domain of unknown function (DUF1984); InterPro: IPR015407 This entry represents the C-terminal region of plant phytochelatin synthases (also known as glutathione gamma-glutamylcysteinyltransferase; 2.3.2.15 from EC), which is involved in the synthesis of phytochelatins (PC) and homophytochelatins (hPC), the heavy-metal-binding peptides of plants. This enzyme is required for detoxification of heavy metals such as cadmium and arsenate. The N-terminal region of phytochelatin synthase contains the active site, as well as four highly conserved cysteine residues that appear to play an important role in heavy-metal-induced phytochelatin catalysis. The C-terminal region is rich in cysteines, and may act as a metal sensor, whereby the Cys residues bind cadmium ions to bring them into closer proximity and transferring them to the activation site in the N-terminal catalytic domain []. The C-terminal region displays homology to the functional domains of metallothionein and metallochaperone.; GO: 0016756 glutathione gamma-glutamylcysteinyltransferase activity, 0046872 metal ion binding, 0010038 response to metal ion, 0046938 phytochelatin biosynthetic process
Probab=36.18 E-value=17 Score=33.05 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=27.4
Q ss_pred HHHHhhCChhHHHHHHhhhhHHHHHHHHHHhccCc
Q 029310 52 VQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGF 86 (195)
Q Consensus 52 vq~~~~g~~a~ya~emerlsAKesLL~Ai~Dagg~ 86 (195)
|.+.-.|....=..|+|||+.||++|.-++|-+=|
T Consensus 65 VRR~Edg~~~LS~EEk~RL~lKe~VL~Qvr~T~LF 99 (264)
T PF09328_consen 65 VRRQEDGGSSLSKEEKERLALKEEVLQQVRETELF 99 (264)
T ss_pred EEecccCCCCCCHHHHHHHHHHHHHHHHHHhchHH
Confidence 33455677778889999999999999999955444
No 9
>PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3.5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A ....
Probab=35.46 E-value=32 Score=24.49 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhccCcchhhcccCChhh--HhHHHHHHHhhhhc
Q 029310 72 AKESLLLAFKDAGGFEALVAGKTTNMQ--QIDVNERITGLERL 112 (195)
Q Consensus 72 AKesLL~Ai~Dagg~e~~v~g~~td~q--ridI~e~i~~LE~L 112 (195)
-+|.+|..+++.||..++.-++.---. +-+||..+..||+-
T Consensus 5 ~ee~Il~~L~~~g~~~a~~ia~~~~L~~~kk~VN~~LY~L~k~ 47 (66)
T PF02295_consen 5 LEEKILDFLKELGGSTATAIAKALGLSVPKKEVNRVLYRLEKQ 47 (66)
T ss_dssp HHHHHHHHHHHHTSSEEEHHHHHHHHTS-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCccHHHHHHHhCcchhHHHHHHHHHHHHHC
Confidence 468899999999977776666655544 89999999999985
No 10
>TIGR02683 upstrm_HI1419 probable addiction module killer protein. Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the upstream member of a gene pair, where the downstream member is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family pfam01381. These gene pairs, when found on the bacterial chromosome, often are located with prophage regions, but also in both integrated plasmid regions and near housekeeping genes. Analysis suggests that the gene pair may serve as an addiction module.
Probab=34.75 E-value=92 Score=22.74 Aligned_cols=52 Identities=17% Similarity=0.099 Sum_probs=35.9
Q ss_pred ChhhHhHHHHHHHhhhhcCCCCCCCCCCcccceeEEEEecCCCchHHHHHHHHHhccccc
Q 029310 95 TNMQQIDVNERITGLERLNPTPRPTTSPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTL 154 (195)
Q Consensus 95 td~qridI~e~i~~LE~LNPTPrPttSpLLeG~W~Lly~G~~SPG~~Aar~L~~rfPs~l 154 (195)
++..+..|.++|..||. . +.|.--+|-+|.|++.+..++ + -|++|...+..+
T Consensus 18 d~~~~~kI~~~i~~l~~-g--~~~~~K~l~~~~~ElR~r~g~--~---yRiif~~~~~~~ 69 (95)
T TIGR02683 18 DPRAKARILARIDRLAL-G--NFGDVKPVGEGVSELRIDFGP--G---YRVYFTQRGKVI 69 (95)
T ss_pred CHHHHHHHHHHHHHHhc-c--CCCCccCCCCCcEEEEecCCC--C---EEEEEEEECCEE
Confidence 34567788889999986 2 235666788889999986652 2 377776666643
No 11
>PF13619 KTSC: KTSC domain
Probab=34.26 E-value=33 Score=23.45 Aligned_cols=39 Identities=33% Similarity=0.636 Sum_probs=30.2
Q ss_pred cCCCCCCCCCCcccceeEEEEec-----------CCCchHHHHHHHHHhcc
Q 029310 112 LNPTPRPTTSPFLEGRWNFEWFG-----------SGSPGFFVARFIFERFP 151 (195)
Q Consensus 112 LNPTPrPttSpLLeG~W~Lly~G-----------~~SPG~~Aar~L~~rfP 151 (195)
.||+.+=++--+.+|. ...|+| +.|+|.|.-+.|..+||
T Consensus 11 Yd~~~~~L~V~F~~G~-~Y~Y~~Vp~~~~~~l~~A~S~g~f~~~~Ik~~y~ 60 (60)
T PF13619_consen 11 YDPETRTLEVEFKSGS-VYRYFGVPPEVYEALLNAPSKGRFFNRNIKGRYP 60 (60)
T ss_pred ECCCCCEEEEEEcCCC-EEEECCCCHHHHHHHHcCCCHHHHHHHhhhccCC
Confidence 4555555555666776 688888 89999999999998887
No 12
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=25.46 E-value=1.5e+02 Score=28.94 Aligned_cols=50 Identities=28% Similarity=0.414 Sum_probs=34.2
Q ss_pred hcccCChhhHhHHHHHHHhhhhc-----CCCCCCCCCCcccceeEEEEecCCCchHHHHHHHHHhcc
Q 029310 90 VAGKTTNMQQIDVNERITGLERL-----NPTPRPTTSPFLEGRWNFEWFGSGSPGFFVARFIFERFP 151 (195)
Q Consensus 90 v~g~~td~qridI~e~i~~LE~L-----NPTPrPttSpLLeG~W~Lly~G~~SPG~~Aar~L~~rfP 151 (195)
.....++.-|++. .+..+|++ ||. +| -.|.+.|.+.|+-..++-+.+.|=
T Consensus 394 ~v~Rl~~yKr~dL--il~~i~~l~~i~~~~~-~p---------vq~V~~Gka~p~d~~gk~~i~~i~ 448 (601)
T TIGR02094 394 FARRFATYKRADL--IFRDLERLARILNNPE-RP---------VQIVFAGKAHPADGEGKEIIQRIV 448 (601)
T ss_pred EEEcchhhhhHHH--HHHHHHHHHHHhhCCC-CC---------eEEEEEEecCcccchHHHHHHHHH
Confidence 4456677778887 66666666 333 23 359999999999777776665553
No 13
>KOG0214 consensus RNA polymerase II, second largest subunit [Transcription]
Probab=23.81 E-value=41 Score=35.90 Aligned_cols=29 Identities=28% Similarity=0.627 Sum_probs=24.2
Q ss_pred HHhhhhcCCCCCCCCCC-cccceeEEEEec
Q 029310 106 ITGLERLNPTPRPTTSP-FLEGRWNFEWFG 134 (195)
Q Consensus 106 i~~LE~LNPTPrPttSp-LLeG~W~Lly~G 134 (195)
...||.++|+|-|-.-- ++||+|-=+--+
T Consensus 520 mE~le~~~ps~~~datkvfvNG~wvGlhrd 549 (1141)
T KOG0214|consen 520 MENLEEISPSPSPDATKVFVNGVWVGLHRD 549 (1141)
T ss_pred hhhHhhcCCCcCCCceEEEEcccEEEecCC
Confidence 56799999999999888 999999755433
No 14
>TIGR00053 addiction module toxin component, YafQ family. This model represents a cluster of eubacterial proteins and a cluster of archaeal proteins, all of which are uncharacterized, from 85 to 102 residues in length, and similar in sequence. These include YafQ, a ribosome-associated endoribonuclease that serves as part of a toxin-antitoxin system, for which DinJ is the antidote component.
Probab=23.54 E-value=91 Score=22.02 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=15.3
Q ss_pred hHHHHHHHhhhhcCCCCCCCCCCcccce
Q 029310 100 IDVNERITGLERLNPTPRPTTSPFLEGR 127 (195)
Q Consensus 100 idI~e~i~~LE~LNPTPrPttSpLLeG~ 127 (195)
..|.+.|..|..-+|.|+....--|-|+
T Consensus 26 ~~i~~~i~~l~~~~~~p~~~~~~~L~G~ 53 (89)
T TIGR00053 26 KKLLKKMEELINTLPLPEHYKDHPLRGP 53 (89)
T ss_pred HHHHHHHHHHHcCCCCCcccCCccCcCC
Confidence 4455566666665666765443233343
No 15
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=22.76 E-value=94 Score=19.50 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=29.8
Q ss_pred HHHHHHHHHhccCcchhhcccCChhhHhHHHHHHHhhhhc
Q 029310 73 KESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERL 112 (195)
Q Consensus 73 KesLL~Ai~Dagg~e~~v~g~~td~qridI~e~i~~LE~L 112 (195)
+..+|..+.+.|+....-.+.....-+..++..+..|++-
T Consensus 5 ~~~Il~~l~~~~~~t~~ela~~~~is~~tv~~~l~~L~~~ 44 (48)
T PF13412_consen 5 QRKILNYLRENPRITQKELAEKLGISRSTVNRYLKKLEEK 44 (48)
T ss_dssp HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 4568888888888877777777777788888888888864
No 16
>PF03724 META: META domain; InterPro: IPR005184 A domain found in proteins of unknown function [], some of which are described as heat shock protein (HslJ). In Helicobacter pylori (Campylobacter pylori) the protein is secreted e.g. (O25998 from SWISSPROT) and implicated in motility. In Leishmania spp. it is described as an essential protein, over-expression of which, in Leishmania amazonensis increases virulence (O43987 from SWISSPROT; []). A pair of cysteine residues show correlated conservation, suggesting that they form a disulphide bond. ; PDB: 2KTS_A 2LA7_A.
Probab=20.49 E-value=79 Score=21.99 Aligned_cols=15 Identities=20% Similarity=0.638 Sum_probs=10.8
Q ss_pred CcccceeEEEEecCC
Q 029310 122 PFLEGRWNFEWFGSG 136 (195)
Q Consensus 122 pLLeG~W~Lly~G~~ 136 (195)
||.+|.|.|.+....
T Consensus 1 ~L~~~~W~l~~~~~~ 15 (101)
T PF03724_consen 1 PLQGGTWQLTSIDGD 15 (101)
T ss_dssp -TTTEEEEEEEE-SS
T ss_pred CccCCEEEEEEEecC
Confidence 789999999876433
Done!