Query 029310
Match_columns 195
No_of_seqs 39 out of 41
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 17:44:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029310.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029310hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1utr_A Uteroglobin; clara cell 82.8 2.6 8.8E-05 30.8 5.5 68 50-130 29-96 (96)
2 2lnb_A Z-DNA-binding protein 1 69.0 2.2 7.7E-05 31.6 1.9 40 72-111 20-60 (80)
3 1ccd_A Clara cell 17 KD protei 63.5 12 0.0004 26.5 4.7 72 46-130 3-77 (77)
4 1oyi_A Double-stranded RNA-bin 50.6 6.9 0.00024 28.3 1.7 51 60-111 6-56 (82)
5 1xmk_A Double-stranded RNA-spe 47.8 12 0.00041 26.6 2.6 46 66-111 6-52 (79)
6 3gqu_A NOP5P protein; RNA bind 41.6 40 0.0014 27.6 5.1 61 54-120 96-157 (169)
7 2jvf_A De novo protein M7; tet 36.1 32 0.0011 25.8 3.4 43 64-109 28-72 (96)
8 3g5o_B Uncharacterized protein 34.0 43 0.0015 23.5 3.7 32 97-131 36-71 (102)
9 3bpq_B Toxin RELE3; protein to 33.6 44 0.0015 21.2 3.4 30 99-130 21-56 (88)
10 1utg_A Uteroglobin; steroid bi 30.8 1E+02 0.0035 21.1 5.1 55 51-109 9-63 (70)
11 2a6s_A Toxin YOEB; YEFM, antit 30.8 51 0.0017 21.3 3.4 17 99-116 24-40 (84)
12 1qbj_A Protein (double-strande 30.3 27 0.00091 24.5 2.1 41 73-113 12-55 (81)
13 1wmi_A RELE, hypothetical prot 27.6 48 0.0016 20.9 2.8 17 99-116 23-39 (90)
14 1rz4_A Eukaryotic translation 27.2 26 0.00089 28.7 1.8 24 96-119 5-28 (226)
15 1puo_A Major allergen I polype 27.1 56 0.0019 27.1 3.7 66 43-111 90-158 (170)
16 1nd9_A Translation initiation 25.8 72 0.0025 18.9 3.2 40 62-104 7-46 (49)
17 1use_A VAsp, vasodilator-stimu 24.5 70 0.0024 21.4 3.2 15 65-81 7-21 (45)
18 2khe_A Toxin RELE, toxin-like 24.1 98 0.0033 19.3 3.8 33 99-131 23-59 (89)
No 1
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=82.75 E-value=2.6 Score=30.78 Aligned_cols=68 Identities=16% Similarity=0.251 Sum_probs=52.8
Q ss_pred HHHHHHhhCChhHHHHHHhhhhHHHHHHHHHHhccCcchhhcccCChhhHhHHHHHHHhhhhcCCCCCCCCCCcccceeE
Q 029310 50 AMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTPRPTTSPFLEGRWN 129 (195)
Q Consensus 50 a~vq~~~~g~~a~ya~emerlsAKesLL~Ai~Dagg~e~~v~g~~td~qridI~e~i~~LE~LNPTPrPttSpLLeG~W~ 129 (195)
..++.+-.|++..|-.++++..+-+..++|.. ++..-+- +.++.+|..|...+.++ ..||+=+++|+
T Consensus 29 ~~v~~fl~~S~~~Y~~~L~~y~~~~~a~~A~~---~lK~Cvd-~ls~e~r~~i~~ll~~I---------~~S~~C~~~~~ 95 (96)
T 1utr_A 29 QVLEALLLGSESNYEAALKPFNPASDLQNAGT---QLKRLVD-TLPQETRINIVKLTEKI---------LTSPLCEQDLR 95 (96)
T ss_dssp HHHHHHTTCCSSHHHHHHGGGCCCHHHHHHHH---HHHHHHT-TSCSHHHHHHHHHHHHH---------TSCCCC-----
T ss_pred HHHHHHhcCCHHHHHHHHHhcCCCHHHHHHHH---HHHHHHH-hCCHHHHHHHHHHHHHH---------HcCccccccCC
Confidence 34566677999999999999999999999998 8999888 99999999997777766 35777778887
Q ss_pred E
Q 029310 130 F 130 (195)
Q Consensus 130 L 130 (195)
+
T Consensus 96 ~ 96 (96)
T 1utr_A 96 V 96 (96)
T ss_dssp -
T ss_pred C
Confidence 4
No 2
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=69.04 E-value=2.2 Score=31.62 Aligned_cols=40 Identities=13% Similarity=0.235 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcc-CcchhhcccCChhhHhHHHHHHHhhhh
Q 029310 72 AKESLLLAFKDAG-GFEALVAGKTTNMQQIDVNERITGLER 111 (195)
Q Consensus 72 AKesLL~Ai~Dag-g~e~~v~g~~td~qridI~e~i~~LE~ 111 (195)
.||.+|++++|+| |+.++=-++.+.-+|-+|+.+|..|=.
T Consensus 20 ~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKk 60 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKK 60 (80)
T ss_dssp HHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5899999999998 888888888888899999999988853
No 3
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=63.48 E-value=12 Score=26.48 Aligned_cols=72 Identities=17% Similarity=0.261 Sum_probs=57.9
Q ss_pred hHHHHH---HHHHhhCChhHHHHHHhhhhHHHHHHHHHHhccCcchhhcccCChhhHhHHHHHHHhhhhcCCCCCCCCCC
Q 029310 46 LRCKAM---VQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTPRPTTSP 122 (195)
Q Consensus 46 ~~c~a~---vq~~~~g~~a~ya~emerlsAKesLL~Ai~Dagg~e~~v~g~~td~qridI~e~i~~LE~LNPTPrPttSp 122 (195)
..|-++ |+.+-.|++..|-..+++..+-++.++|.. -+...+- +.++.+|..|...+.+. ..||
T Consensus 3 ~iCpal~~~v~~~l~~s~~~Y~~~l~~y~~~~~a~eA~~---~lK~C~D-~ls~e~r~~i~~~l~kI---------~~S~ 69 (77)
T 1ccd_A 3 DICPGFLQVLEALLLGSESNYEAALKPFNPASDLQNAGT---QLKRLVD-TLPQETRINIVKLTEKI---------LTSP 69 (77)
T ss_dssp TSCHHHHHHHHHHTTSCHHHHHHHHTTTCCCHHHHHHHH---HHHHHHH-HSCHHHHHHHHHHHHHH---------TTST
T ss_pred ccchhHHHHHHHHhcCCHHHHHHHHHhcCCCHHHHHHHH---HHHHHHH-hCCHHHHHHHHHHHHHH---------HcCc
Confidence 356554 556667999999999999999999999988 7888887 89999999987777665 3577
Q ss_pred cccceeEE
Q 029310 123 FLEGRWNF 130 (195)
Q Consensus 123 LLeG~W~L 130 (195)
+=+++|++
T Consensus 70 ~C~~~~~~ 77 (77)
T 1ccd_A 70 LCEQDLRV 77 (77)
T ss_dssp TTSCCSCC
T ss_pred cccccCCC
Confidence 77788874
No 4
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=50.59 E-value=6.9 Score=28.33 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=37.3
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHhccCcchhhcccCChhhHhHHHHHHHhhhh
Q 029310 60 PAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLER 111 (195)
Q Consensus 60 ~a~ya~emerlsAKesLL~Ai~Dagg~e~~v~g~~td~qridI~e~i~~LE~ 111 (195)
+.-|-.|||--+-++.+|..++..| ..+.-.++.-.-.|.+|+.++.+||+
T Consensus 6 ~~~~~~d~~~~~~~~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~ 56 (82)
T 1oyi_A 6 SKIYIDERSNAEIVCEAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQR 56 (82)
T ss_dssp -------CCSHHHHHHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred cccCccccchHHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3446688998999999999999654 66666677777888999999999987
No 5
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=47.78 E-value=12 Score=26.56 Aligned_cols=46 Identities=20% Similarity=0.267 Sum_probs=39.6
Q ss_pred HHhhhhHHHHHHHHHHhccCcchhhcccCChhhHh-HHHHHHHhhhh
Q 029310 66 EMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQI-DVNERITGLER 111 (195)
Q Consensus 66 emerlsAKesLL~Ai~Dagg~e~~v~g~~td~qri-dI~e~i~~LE~ 111 (195)
+|+--+-++.+|.-++..||..+..-++.=.-.+. +|+..+..||+
T Consensus 6 ~~~~~~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~ 52 (79)
T 1xmk_A 6 SLDMAEIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMER 52 (79)
T ss_dssp SHHHHHHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 34445679999999999999999888888888888 99999999998
No 6
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B
Probab=41.63 E-value=40 Score=27.61 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=39.1
Q ss_pred HHhhCChhHHHHHHhh-hhHHHHHHHHHHhccCcchhhcccCChhhHhHHHHHHHhhhhcCCCCCCCC
Q 029310 54 QAVQGAPAAYAKEMER-LSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTPRPTT 120 (195)
Q Consensus 54 ~~~~g~~a~ya~emer-lsAKesLL~Ai~Dagg~e~~v~g~~td~qridI~e~i~~LE~LNPTPrPtt 120 (195)
..++.+|..+-+-+-| |++|-+|-.-| |+-+ ....-+.-|.+|.++|.+|+..||.|.|-.
T Consensus 96 ~lV~~~p~~~rgK~aR~LAaK~aLAARi-D~~~-----g~~~G~~lreeie~riekl~e~~~~pp~~~ 157 (169)
T 3gqu_A 96 PAINRSPWWQRGKIARALAGKLAIAARV-DYFS-----GEYIAEELKKELEARIKEIKEKYPRPPKRR 157 (169)
T ss_dssp HHHHTSCTTTHHHHHHHHHHHHHHHHHH-HHHT-----CCCCCTTHHHHHHHHHHHCCCSCCC-----
T ss_pred HhhhcCCHHHHHHHHHHHHHHHHHHHhh-cccC-----CcccCHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 3566778888777777 45565554333 4331 012367889999999999999999997754
No 7
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=36.09 E-value=32 Score=25.83 Aligned_cols=43 Identities=30% Similarity=0.389 Sum_probs=28.4
Q ss_pred HHHHhhhhHHHHHHHHHHhcc--CcchhhcccCChhhHhHHHHHHHhh
Q 029310 64 AKEMERLSAKESLLLAFKDAG--GFEALVAGKTTNMQQIDVNERITGL 109 (195)
Q Consensus 64 a~emerlsAKesLL~Ai~Dag--g~e~~v~g~~td~qridI~e~i~~L 109 (195)
.||+|| |-++|-.|++.+| .+..++++. .|.|.-+.+|.|+.|
T Consensus 28 gkeler--alqelekalaragarnvqitisae-ndeqakelleliarl 72 (96)
T 2jvf_A 28 GKELER--ALQELEKALARAGARNVQITISAE-NDEQAKELLELIARL 72 (96)
T ss_dssp SSHHHH--HHHHHHHHHHHHTCSEEEEEEECS-SHHHHHHHHHHHHHH
T ss_pred cHHHHH--HHHHHHHHHHhccccceEEEEEec-ChHHHHHHHHHHHHH
Confidence 478887 6678888888888 455555554 355555666666543
No 8
>3g5o_B Uncharacterized protein RV2866; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=33.96 E-value=43 Score=23.54 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=18.1
Q ss_pred hhHhHHHHHH-HhhhhcCCCCCCCCCCc---ccceeEEE
Q 029310 97 MQQIDVNERI-TGLERLNPTPRPTTSPF---LEGRWNFE 131 (195)
Q Consensus 97 ~qridI~e~i-~~LE~LNPTPrPttSpL---LeG~W~Ll 131 (195)
..+..|.++| ..|+ -||.+. ..+| +.|-|++.
T Consensus 36 ~~~~~I~~~I~~~L~-~~P~~~--gk~L~g~~~g~~r~R 71 (102)
T 3g5o_B 36 RILAAVVEFAFGDLS-REPLRV--GKPLRRELAGTFSAR 71 (102)
T ss_dssp HHHHHHHHHHTTHHH-HCTTTS--SEECCGGGTTCEEEE
T ss_pred HHHHHHHHHHHHHHH-hCcccC--CeeccCCCceEEEEE
Confidence 4456677777 6674 577642 2343 34556654
No 9
>3bpq_B Toxin RELE3; protein toxin-antitoxin complex; 2.20A {Methanocaldococcus jannaschii}
Probab=33.56 E-value=44 Score=21.19 Aligned_cols=30 Identities=3% Similarity=0.016 Sum_probs=14.8
Q ss_pred HhHHHHHHHhhhhc--CCC-C---CCCCCCcccceeEE
Q 029310 99 QIDVNERITGLERL--NPT-P---RPTTSPFLEGRWNF 130 (195)
Q Consensus 99 ridI~e~i~~LE~L--NPT-P---rPttSpLLeG~W~L 130 (195)
+..+.+.+.+++.+ ||. + +|+.. +.|-|++
T Consensus 21 ~~~i~~~i~~~~~l~~~P~~~~~~~~l~g--~~~~~~~ 56 (88)
T 3bpq_B 21 RKRIKLIIEECQNSNSLNDLKLDIKKIKG--YHNYYRI 56 (88)
T ss_dssp HHHHHHHHHHHHHHCCCC-CCCCEEECTT--SSSEEEE
T ss_pred HHHHHHHHHHHHhcccCcCcccCceeccC--CCCeEEE
Confidence 34455666666655 554 2 23332 4566665
No 10
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=30.83 E-value=1e+02 Score=21.08 Aligned_cols=55 Identities=7% Similarity=0.250 Sum_probs=46.7
Q ss_pred HHHHHhhCChhHHHHHHhhhhHHHHHHHHHHhccCcchhhcccCChhhHhHHHHHHHhh
Q 029310 51 MVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGL 109 (195)
Q Consensus 51 ~vq~~~~g~~a~ya~emerlsAKesLL~Ai~Dagg~e~~v~g~~td~qridI~e~i~~L 109 (195)
.|+.+-.|++..|-..+++..+-+..++|.. -+...+- +.++.+|..|...+.+.
T Consensus 9 ~v~~~l~~s~~~Y~~~l~~y~~~~~~~~A~~---~lK~C~d-~ls~e~~~~i~~~l~kI 63 (70)
T 1utg_A 9 VIENLLLGTPSSYETSLKEFEPDDTMKDAGM---QMKKVLD-SLPQTTRENIMKLTEKI 63 (70)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCCCHHHHHHHH---HHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHhcCCCHHHHHHHH---HHHHHHH-hCCHHHHHHHHHHHHHH
Confidence 4566677999999999999999999999988 7888887 89999999987776554
No 11
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=30.82 E-value=51 Score=21.30 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=11.0
Q ss_pred HhHHHHHHHhhhhcCCCC
Q 029310 99 QIDVNERITGLERLNPTP 116 (195)
Q Consensus 99 ridI~e~i~~LE~LNPTP 116 (195)
...|.+.|..|.. ||-+
T Consensus 24 ~~~i~~~i~~l~~-~P~~ 40 (84)
T 2a6s_A 24 VKKINELIKDTRR-TPFE 40 (84)
T ss_dssp HHHHHHHHHHHHH-STTS
T ss_pred HHHHHHHHHHHHh-CCCC
Confidence 4556677777755 7755
No 12
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=30.35 E-value=27 Score=24.46 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcc---CcchhhcccCChhhHhHHHHHHHhhhhcC
Q 029310 73 KESLLLAFKDAG---GFEALVAGKTTNMQQIDVNERITGLERLN 113 (195)
Q Consensus 73 KesLL~Ai~Dag---g~e~~v~g~~td~qridI~e~i~~LE~LN 113 (195)
.+.+|..+++.| ++.+.-.++.-...|-.|+.++..||+-.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G 55 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKG 55 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 456888888777 55544444445566788999999999854
No 13
>1wmi_A RELE, hypothetical protein PHS013; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: d.298.1.2
Probab=27.55 E-value=48 Score=20.88 Aligned_cols=17 Identities=29% Similarity=0.161 Sum_probs=11.1
Q ss_pred HhHHHHHHHhhhhcCCCC
Q 029310 99 QIDVNERITGLERLNPTP 116 (195)
Q Consensus 99 ridI~e~i~~LE~LNPTP 116 (195)
+..|.++|..|+. ||.+
T Consensus 23 ~~~i~~~i~~L~~-~P~~ 39 (90)
T 1wmi_A 23 YRRFLEFRDILEY-EPVP 39 (90)
T ss_dssp HHHHHHHHHHHTT-CSCC
T ss_pred HHHHHHHHHHHHh-CCCC
Confidence 3456677877865 6754
No 14
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=27.24 E-value=26 Score=28.74 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=19.7
Q ss_pred hhhHhHHHHHHHhhhhcCCCCCCC
Q 029310 96 NMQQIDVNERITGLERLNPTPRPT 119 (195)
Q Consensus 96 d~qridI~e~i~~LE~LNPTPrPt 119 (195)
+..+..|-+.+.++||+||.-=|+
T Consensus 5 ~~~~~~i~~~l~~~~rYnp~~l~~ 28 (226)
T 1rz4_A 5 EQMRANVGKLLKGIDRYNPENLAT 28 (226)
T ss_dssp HHHHHHHHHHHHSGGGGCGGGHHH
T ss_pred hhhhHHHHHHHhccccCCHHHHHH
Confidence 567788889999999999986544
No 15
>1puo_A Major allergen I polypeptide, fused chain 2, chain 1; CAT allergen, uteroglobin, secretoglobin; 1.85A {Felis catus} SCOP: a.101.1.1 a.101.1.1
Probab=27.11 E-value=56 Score=27.07 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=52.5
Q ss_pred hhhhHHHHH---HHHHhhCChhHHHHHHhhhhHHHHHHHHHHhccCcchhhcccCChhhHhHHHHHHHhhhh
Q 029310 43 RRRLRCKAM---VQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLER 111 (195)
Q Consensus 43 ~~~~~c~a~---vq~~~~g~~a~ya~emerlsAKesLL~Ai~Dagg~e~~v~g~~td~qridI~e~i~~LE~ 111 (195)
-.|+.|-|+ |.-+-.|.+-.|-..+++-.-.-.+|+--+ -+.--|-+|.|+.||..+...|.+.++
T Consensus 90 lgrgiCPA~~~~V~LFl~Gt~EeYve~vkqY~~~p~vLenae---~iK~CvD~~LTeeDK~~at~~i~kI~a 158 (170)
T 1puo_A 90 LGREICPAVKRDVDLFLTGTPDEYVEQVAQYKALPVVLENAR---ILKNCVDAKMTEEDKENALSLLDKIYT 158 (170)
T ss_dssp ---CCCHHHHHHHHHHHHSCHHHHHHHHHTTCCCHHHHHHHH---HHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred cccccChhHHhhhhhhccCChHHHHHHHHHhcCChHHHHhHH---HHHHhhcccccHhHHHHHHHHHHHHhc
Confidence 456788776 455678999999999999988888887666 667788899999999999888887764
No 16
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=25.83 E-value=72 Score=18.91 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=25.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHhccCcchhhcccCChhhHhHHHH
Q 029310 62 AYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNE 104 (195)
Q Consensus 62 ~ya~emerlsAKesLL~Ai~Dagg~e~~v~g~~td~qridI~e 104 (195)
.+|+|+- .+.| .|++-++|+|- ....+.+.++.++..+.+
T Consensus 7 ~lAkel~-~~~k-~l~~~l~~~g~-~k~~~s~l~~~~~~~l~~ 46 (49)
T 1nd9_A 7 TLAAERQ-TSVE-RLVQQFADAGI-RKSADDSVSAQEKQTLID 46 (49)
T ss_dssp HHHHHHS-SSHH-HHHHHHHHHTS-CCSSSSCEETTGGGHHHH
T ss_pred HHHHHHC-cCHH-HHHHHHHHcCC-CCCCCCcCCHHHHHHHHH
Confidence 3677773 3444 68899999887 444455666666665543
No 17
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=24.51 E-value=70 Score=21.40 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=9.7
Q ss_pred HHHhhhhHHHHHHHHHH
Q 029310 65 KEMERLSAKESLLLAFK 81 (195)
Q Consensus 65 ~emerlsAKesLL~Ai~ 81 (195)
-|||++ |+++|..++
T Consensus 7 ~dle~~--KqEIL~E~R 21 (45)
T 1use_A 7 SDLQRV--KQELLEEVK 21 (45)
T ss_dssp HHHHHH--HHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHH
Confidence 456654 677777766
No 18
>2khe_A Toxin RELE, toxin-like protein; toxin-antitoxin, RNAse, plasmid, hydrolase, structural genomics, NPPSFA; NMR {Thermus thermophilus}
Probab=24.15 E-value=98 Score=19.31 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=15.2
Q ss_pred HhHHHHHHHhhh--hcCCCC--CCCCCCcccceeEEE
Q 029310 99 QIDVNERITGLE--RLNPTP--RPTTSPFLEGRWNFE 131 (195)
Q Consensus 99 ridI~e~i~~LE--~LNPTP--rPttSpLLeG~W~Ll 131 (195)
+..|.+.|..|. .-||.+ .|+...-+.|-|++.
T Consensus 23 ~~~i~~~i~~l~~~~~~P~~~~~~l~g~~~~~~~~~r 59 (89)
T 2khe_A 23 ARRILRFLRERVATLEDPRSLGEPLRGPELGRFWKYR 59 (89)
T ss_dssp HHHHHHHHHHHHHHSSSSSSSEEECCCSSCCSCEEEE
T ss_pred HHHHHHHHHHhhccccCCCccCccCcCCCCCCeEEEE
Confidence 344555666553 336655 122220124666654
Done!