Query 029310
Match_columns 195
No_of_seqs 39 out of 41
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 17:44:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029310.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029310hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gyc31 a.108.1.1 (3:2-48) Rib 38.5 13 0.00098 23.6 3.1 25 73-111 3-27 (47)
2 d1rz4a2 a.118.1.18 (A:2-131) E 37.0 7.5 0.00054 28.7 2.0 24 96-119 4-27 (130)
3 d2fbia1 a.4.5.28 (A:5-140) Pro 34.8 12 0.0009 24.9 2.7 22 93-114 115-136 (136)
4 d1bhga2 b.18.1.5 (A:22-225) be 30.0 13 0.00095 26.9 2.3 18 116-133 9-29 (204)
5 d1utga_ a.101.1.1 (A:) Uterogl 29.8 41 0.003 22.4 4.7 57 51-111 9-65 (70)
6 d1ccda_ a.101.1.1 (A:) Clara c 21.2 51 0.0037 22.3 3.9 60 47-110 4-66 (77)
7 d1wmia1 d.298.1.2 (A:1-88) Hyp 20.9 27 0.002 22.2 2.3 23 95-118 19-41 (88)
8 d1xmka1 a.4.5.19 (A:294-366) Z 20.2 30 0.0022 23.2 2.4 43 72-114 6-49 (73)
9 d2o8ra1 a.7.15.1 (A:4-112) Pol 18.0 13 0.00093 25.2 0.1 9 183-191 43-51 (109)
10 d1jlia_ a.26.1.2 (A:) Interleu 17.4 22 0.0016 25.9 1.3 33 97-129 56-92 (112)
No 1
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=38.49 E-value=13 Score=23.58 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=21.5
Q ss_pred HHHHHHHHHhccCcchhhcccCChhhHhHHHHHHHhhhh
Q 029310 73 KESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLER 111 (195)
Q Consensus 73 KesLL~Ai~Dagg~e~~v~g~~td~qridI~e~i~~LE~ 111 (195)
||.+|+||. ++--.|+.|+|.++|.
T Consensus 3 ke~Ileaia--------------~MSVmdvveLi~amEE 27 (47)
T d2gyc31 3 KDQIIEAVA--------------AMSVMDVVELISAMEE 27 (47)
T ss_dssp HHHHHHHHH--------------HSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--------------HhhHHHHHHHHHHHHH
Confidence 889999998 7777888889998885
No 2
>d1rz4a2 a.118.1.18 (A:2-131) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.00 E-value=7.5 Score=28.72 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=19.7
Q ss_pred hhhHhHHHHHHHhhhhcCCCCCCC
Q 029310 96 NMQQIDVNERITGLERLNPTPRPT 119 (195)
Q Consensus 96 d~qridI~e~i~~LE~LNPTPrPt 119 (195)
+..|..|-+.+.++||+||---|+
T Consensus 4 e~~~~~i~~lL~gidRYNPe~l~~ 27 (130)
T d1rz4a2 4 EQMRANVGKLLKGIDRYNPENLAT 27 (130)
T ss_dssp HHHHHHHHHHHHSGGGGCGGGHHH
T ss_pred HHHHHHHHHHHhCcccCCHHHHHH
Confidence 567888889999999999976554
No 3
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=34.77 E-value=12 Score=24.93 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=19.2
Q ss_pred cCChhhHhHHHHHHHhhhhcCC
Q 029310 93 KTTNMQQIDVNERITGLERLNP 114 (195)
Q Consensus 93 ~~td~qridI~e~i~~LE~LNP 114 (195)
..++.++..+.+.+.+|+.+||
T Consensus 115 ~l~~ee~~~l~~~L~~l~~~~p 136 (136)
T d2fbia1 115 RFGEEKLAQLLELLNELKKIKP 136 (136)
T ss_dssp HHCHHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHccCC
Confidence 3468889999999999999998
No 4
>d1bhga2 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.99 E-value=13 Score=26.94 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=12.7
Q ss_pred CCCCCC--C-cccceeEEEEe
Q 029310 116 PRPTTS--P-FLEGRWNFEWF 133 (195)
Q Consensus 116 PrPttS--p-LLeG~W~Lly~ 133 (195)
|+|+.+ - -|||.|+|.+-
T Consensus 9 P~~~~~R~~i~LnG~W~f~~~ 29 (204)
T d1bhga2 9 PQESPSRECKELDGLWSFRAD 29 (204)
T ss_dssp CCCSSSCBCCCSSBCCEEEEE
T ss_pred cCCCCceeEEECCCCeeEEEe
Confidence 455554 3 69999999864
No 5
>d1utga_ a.101.1.1 (A:) Uteroglobin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=29.83 E-value=41 Score=22.38 Aligned_cols=57 Identities=7% Similarity=0.246 Sum_probs=47.7
Q ss_pred HHHHHhhCChhHHHHHHhhhhHHHHHHHHHHhccCcchhhcccCChhhHhHHHHHHHhhhh
Q 029310 51 MVQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLER 111 (195)
Q Consensus 51 ~vq~~~~g~~a~ya~emerlsAKesLL~Ai~Dagg~e~~v~g~~td~qridI~e~i~~LE~ 111 (195)
-|+-+-.|.|..|-.-++.-.--..++++-+ -+...|- +-++.+|..|...|.+.+.
T Consensus 9 ~v~~fl~GT~eeY~~~vk~y~~~~~~le~~~---~lK~cvD-tLt~edK~~i~~liekI~~ 65 (70)
T d1utga_ 9 VIENLLLGTPSSYETSLKEFEPDDTMKDAGM---QMKKVLD-SLPQTTRENIMKLTEKIVK 65 (70)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCCCHHHHHHHH---HHHHHHT-TSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHccCCCHHHHHHHH---HHHHHHh-cCCHHHHHHHHHHHHHHhc
Confidence 3566677999999999999888888888877 6777888 7999999999888877753
No 6
>d1ccda_ a.101.1.1 (A:) Clara cell 17kDa protein {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.24 E-value=51 Score=22.28 Aligned_cols=60 Identities=13% Similarity=0.244 Sum_probs=49.1
Q ss_pred HHHHH---HHHHhhCChhHHHHHHhhhhHHHHHHHHHHhccCcchhhcccCChhhHhHHHHHHHhhh
Q 029310 47 RCKAM---VQQAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLE 110 (195)
Q Consensus 47 ~c~a~---vq~~~~g~~a~ya~emerlsAKesLL~Ai~Dagg~e~~v~g~~td~qridI~e~i~~LE 110 (195)
.|-|+ ||-+-.|.|..|-.-++.-.--..++++-+ -+...|- +-++.+|..|...|.++.
T Consensus 4 iCPa~~~~V~~fl~GT~eeY~~~vk~y~~d~~~lea~~---~LK~cVD-tLteedK~~i~~liekI~ 66 (77)
T d1ccda_ 4 ICPGFLQVLEALLLGSESNYEAALKPFNPASDLQNAGT---QLKRLVD-TLPQETRINIVKLTEKIL 66 (77)
T ss_dssp SCHHHHHHHHHHTTSCHHHHHHHHTTTCCCHHHHHHHH---HHHHHHH-HSCHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHccCCCHHHHHHHH---HHHHHHh-cCCHhhHHHHHHHHHHHH
Confidence 45544 566667999999999999888888888887 7778888 689999999988887775
No 7
>d1wmia1 d.298.1.2 (A:1-88) Hypothetical protein PHS013 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=20.92 E-value=27 Score=22.18 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=16.2
Q ss_pred ChhhHhHHHHHHHhhhhcCCCCCC
Q 029310 95 TNMQQIDVNERITGLERLNPTPRP 118 (195)
Q Consensus 95 td~qridI~e~i~~LE~LNPTPrP 118 (195)
....+..|.+.+..|+. ||.+.|
T Consensus 19 ~~~~~~~I~~~l~~L~~-~P~~~~ 41 (88)
T d1wmia1 19 PKAHYRRFLEFRDILEY-EPVPRE 41 (88)
T ss_dssp CHHHHHHHHHHHHHHTT-CSCCHH
T ss_pred CHHHHHHHHHHHHHHHh-CcCcCC
Confidence 45667778778877765 887654
No 8
>d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.17 E-value=30 Score=23.20 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhccCcchhhcccCChhhH-hHHHHHHHhhhhcCC
Q 029310 72 AKESLLLAFKDAGGFEALVAGKTTNMQQ-IDVNERITGLERLNP 114 (195)
Q Consensus 72 AKesLL~Ai~Dagg~e~~v~g~~td~qr-idI~e~i~~LE~LNP 114 (195)
-+|.++..+.+.|+-.++.-++.=-..+ -+||..+..||+-.-
T Consensus 6 ~eekI~~~L~~~g~~~Al~iak~lGl~kakeVN~~LY~L~k~g~ 49 (73)
T d1xmka1 6 IKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGD 49 (73)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCchHHHHHHHhCCCcHHHHhHHHHHHHHCCC
Confidence 3678899999999988888888777778 489999999998653
No 9
>d2o8ra1 a.7.15.1 (A:4-112) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}
Probab=18.04 E-value=13 Score=25.16 Aligned_cols=9 Identities=44% Similarity=0.999 Sum_probs=6.5
Q ss_pred cchhhhhhh
Q 029310 183 SLDEFYMLT 191 (195)
Q Consensus 183 s~~~~~~~~ 191 (195)
+.|||||.-
T Consensus 43 NLDEFFmVR 51 (109)
T d2o8ra1 43 NLEEFYTVR 51 (109)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 578888853
No 10
>d1jlia_ a.26.1.2 (A:) Interleukin-3 (IL-3) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.41 E-value=22 Score=25.92 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=26.8
Q ss_pred hhHhHHHHHHHhhhhcCC--CCCCCCCCcc--cceeE
Q 029310 97 MQQIDVNERITGLERLNP--TPRPTTSPFL--EGRWN 129 (195)
Q Consensus 97 ~qridI~e~i~~LE~LNP--TPrPttSpLL--eG~W~ 129 (195)
....+|.+.+..|--.=| |+-|+.-|.. +|+|.
T Consensus 56 qn~s~I~snLk~l~pcLP~At~~pt~~pI~I~~~d~~ 92 (112)
T d1jlia_ 56 ENASAIESILKNLLPCLPLATAAPTRHPIHIKDGDWN 92 (112)
T ss_dssp TTCHHHHHHHHHHGGGSCCTTSSCCSCCCCCCSSCHH
T ss_pred hhHHHHHHHHHhccCcCccCCCCCCCCCeeeccCCHH
Confidence 556778788888888888 8889999955 99994
Done!