BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029311
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|B Chain B, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|C Chain C, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|D Chain D, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
Length = 553
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 16/128 (12%)
Query: 23 GSLNNLSSLNKQYG----LSKGSN-EAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVL 77
G + N +L +YG GS+ E + + +++GP + L DL G F F L
Sbjct: 75 GEIYNHQALRAEYGDRYQFQTGSDCEVILAL-----YQEKGP----EFLDDLQGMFAFAL 125
Query: 78 YDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSEQ 137
YD + D + L+ G G + ++ ++ + C ++ FPAG S+
Sbjct: 126 YDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVC-RTIKEFPAGSYLWSQD 184
Query: 138 G-LMSFEH 144
G + S+ H
Sbjct: 185 GEIRSYYH 192
>pdb|3R3C|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant H64a Complexed
With 4-Hydroxyphenacyl Coa
pdb|3R3C|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant H64a Complexed
With 4-Hydroxyphenacyl Coa
Length = 151
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 67 RDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAP 126
+ LDG+ GFV+ + A+++ + +R WG+ A G+ + +A+ A
Sbjct: 28 QTLDGTVGFVIDEMTPERATASVEVTDTLRQRWGLVAGGAYCALAEMLATEATVA---VV 84
Query: 127 FPAGCMFHSEQGLMSFEHPTRE 148
G M + SF P +E
Sbjct: 85 HEKGMMAVGQSNHTSFFRPVKE 106
>pdb|3R34|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73d Complexed
With Coa
pdb|3R34|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73d Complexed
With Coa
pdb|3R35|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73d Complexed
With 4-Hydroxyphenacyl Coa
pdb|3R35|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73d Complexed
With 4-Hydroxyphenacyl Coa
Length = 151
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 67 RDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAP 126
+ LDG+ GFV+ + A+++ + +R WG+ G+ ++ +A+ A
Sbjct: 28 QTLDGTVGFVIDEMTPERATASVEVTDTLRQRWGLVHGGAYCALADMLATEATVA---VV 84
Query: 127 FPAGCMFHSEQGLMSFEHPTRE 148
G M + SF P +E
Sbjct: 85 HEKGMMAVGQSNHTSFFRPVKE 106
>pdb|3R3D|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant T77s Complexed
With 4-Hydroxyphenacyl Coa
pdb|3R3D|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant T77s Complexed
With 4-Hydroxyphenacyl Coa
Length = 151
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 67 RDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAP 126
+ LDG+ GFV+ + A+++ + +R WG+ G+ L + AS A
Sbjct: 28 QTLDGTVGFVIDEMTPERATASVEVTDTLRQRWGLVHGGAYCA---LAEMLASEATVAVV 84
Query: 127 FPAGCMFHSEQGLMSFEHPTRE 148
G M + SF P +E
Sbjct: 85 HEKGMMAVGQSNHTSFFRPVKE 106
>pdb|3R36|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73q Complexed
With 4-Hydroxybenzoic Acid
pdb|3R36|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73q Complexed
With 4-Hydroxybenzoic Acid
pdb|3R37|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73q Complexed
With 4-Hydroxyphenacyl Coa
pdb|3R37|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73q Complexed
With 4-Hydroxyphenacyl Coa
Length = 151
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 67 RDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAP 126
+ LDG+ GFV+ + A+++ + +R WG+ G+ + +A+ A
Sbjct: 28 QTLDGTVGFVIDEMTPERATASVEVTDTLRQRWGLVHGGAYCALAQMLATEATVA---VV 84
Query: 127 FPAGCMFHSEQGLMSFEHPTRE 148
G M + SF P +E
Sbjct: 85 HEKGMMAVGQSNHTSFFRPVKE 106
>pdb|1ION|A Chain A, The Septum Site-Determining Protein Mind Complexed With
Mg-Adp From Pyrococcus Horikoshii Ot3
Length = 243
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 59 PYPAHQVLRDLDGSFGFVLYDCKAG 83
P +V++ L G + F+L DC AG
Sbjct: 98 PRKLPEVIKSLKGKYDFILIDCPAG 122
>pdb|3R3A|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant Q58a Complexed
With 4-Hydroxybenzoic Acid And Coa
pdb|3R3A|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant Q58a Complexed
With 4-Hydroxybenzoic Acid And Coa
pdb|3R3B|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant Q58a Complexed
With 4-Hydroxyphenacyl Coa
pdb|3R3B|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant Q58a Complexed
With 4-Hydroxyphenacyl Coa
Length = 151
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 67 RDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAP 126
+ LDG+ GFV+ + A+++ + +R WG+ G+ + +A+ A
Sbjct: 28 QTLDGTVGFVIDEMTPERATASVEVTDTLRARWGLVHGGAYCALAEMLATEATVA---VV 84
Query: 127 FPAGCMFHSEQGLMSFEHPTRE 148
G M + SF P +E
Sbjct: 85 HEKGMMAVGQSNHTSFFRPVKE 106
>pdb|1Q4S|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Complexed With Coa And
4-Hydroxybenzoic Acid
pdb|1Q4S|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Complexed With Coa And
4-Hydroxybenzoic Acid
pdb|1Q4T|A Chain A, Crystal Structure Of 4-Hydroxybenzoyl Coa Thioesterase
From Arthrobacter Sp. Strain Su Complexed With
4-Hydroxyphenyl Coa
pdb|1Q4T|B Chain B, Crystal Structure Of 4-Hydroxybenzoyl Coa Thioesterase
From Arthrobacter Sp. Strain Su Complexed With
4-Hydroxyphenyl Coa
pdb|1Q4U|A Chain A, Crystal Structure Of 4-hydroxybenzoyl Coa Thioesterase
From Arthrobacter Sp. Strain Su Complexed With
4-hydroxybenzyl Coa
pdb|1Q4U|B Chain B, Crystal Structure Of 4-hydroxybenzoyl Coa Thioesterase
From Arthrobacter Sp. Strain Su Complexed With
4-hydroxybenzyl Coa
Length = 151
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 67 RDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAP 126
+ LDG+ GFV+ + A+++ + +R WG+ G+ + +A+ A
Sbjct: 28 QTLDGTVGFVIDEMTPERATASVEVTDTLRQRWGLVHGGAYCALAEMLATEATVA---VV 84
Query: 127 FPAGCMFHSEQGLMSFEHPTRE 148
G M + SF P +E
Sbjct: 85 HEKGMMAVGQSNHTSFFRPVKE 106
>pdb|3R32|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73a Complexed
With 4-Hydroxyphenacyl Coa
pdb|3R32|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant E73a Complexed
With 4-Hydroxyphenacyl Coa
Length = 151
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 67 RDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAP 126
+ LDG+ GFV+ + A+++ + +R WG+ G+ L + A+ A
Sbjct: 28 QTLDGTVGFVIDEMTPERATASVEVTDTLRQRWGLVHGGAYCA---LAAMLATEATVAVV 84
Query: 127 FPAGCMFHSEQGLMSFEHPTRE 148
G M + SF P +E
Sbjct: 85 HEKGMMAVGQSNHTSFFRPVKE 106
>pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
pdb|1G3R|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
Length = 237
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 59 PYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDA 91
P +V++ L F F+L DC AG A+ A
Sbjct: 98 PRKLPEVIKSLKDKFDFILIDCPAGLQLDAMSA 130
>pdb|3TEA|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Double Mutant Q58eE73A
COMPLEXED WITH 4-Hydroxyphenacyl Coa
pdb|3TEA|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Double Mutant Q58eE73A
COMPLEXED WITH 4-Hydroxyphenacyl Coa
Length = 151
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 67 RDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAP 126
+ LDG+ GFV+ + A+++ + +R WG+ G+ L + A+ A
Sbjct: 28 QTLDGTVGFVIDEMTPERATASVEVTDTLRERWGLVHGGAYCA---LAAMLATEATVAVV 84
Query: 127 FPAGCMFHSEQGLMSFEHPTRE 148
G M + SF P +E
Sbjct: 85 HEKGMMAVGQSNHTSFFRPVKE 106
>pdb|3R3F|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant T77a Complexed
With 4-Hydroxyphenacyl Coa
pdb|3R3F|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
4-Hydroxybenzoyl Coa Thioesterase Mutant T77a Complexed
With 4-Hydroxyphenacyl Coa
Length = 151
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 69 LDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGS 106
LDG+ GFV+ + A+++ + +R WG+ G+
Sbjct: 30 LDGTVGFVIDEMTPERATASVEVTDTLRQRWGLVHGGA 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,890,737
Number of Sequences: 62578
Number of extensions: 221870
Number of successful extensions: 469
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 465
Number of HSP's gapped (non-prelim): 12
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)