Query 029311
Match_columns 195
No_of_seqs 185 out of 1553
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 10:52:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029311.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029311hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01910 Wali7 This domain is p 100.0 2.6E-48 5.7E-53 322.7 19.4 165 4-168 60-224 (224)
2 PF12481 DUF3700: Aluminium in 100.0 3.1E-40 6.7E-45 271.1 15.3 164 5-168 65-228 (228)
3 PLN02549 asparagine synthase ( 100.0 2.6E-39 5.7E-44 301.8 18.0 163 5-175 58-237 (578)
4 PRK09431 asnB asparagine synth 100.0 6.7E-39 1.5E-43 298.1 17.5 163 5-175 58-239 (554)
5 KOG0571 Asparagine synthase (g 100.0 6.8E-40 1.5E-44 290.1 10.3 165 4-175 56-237 (543)
6 PTZ00077 asparagine synthetase 100.0 1.2E-38 2.7E-43 297.8 18.8 165 4-175 62-249 (586)
7 COG0367 AsnB Asparagine syntha 100.0 5.5E-36 1.2E-40 277.9 14.6 163 4-175 56-242 (542)
8 TIGR03104 trio_amidotrans aspa 100.0 1E-33 2.2E-38 265.1 16.3 163 5-175 58-272 (589)
9 TIGR01536 asn_synth_AEB aspara 100.0 6.7E-33 1.4E-37 252.8 15.7 164 5-176 56-266 (467)
10 cd01909 betaLS_CarA_N Glutamin 100.0 1.7E-32 3.7E-37 225.6 15.0 127 7-145 44-199 (199)
11 TIGR03108 eps_aminotran_1 exos 100.0 2E-32 4.4E-37 257.8 14.4 164 5-175 58-270 (628)
12 cd00712 AsnB Glutamine amidotr 100.0 2E-30 4.3E-35 215.3 16.4 132 5-144 56-220 (220)
13 PF13537 GATase_7: Glutamine a 100.0 1.4E-29 3.1E-34 193.5 10.3 109 6-118 12-125 (125)
14 PRK07631 amidophosphoribosyltr 100.0 1.6E-27 3.4E-32 218.0 17.3 149 6-157 94-258 (475)
15 PRK08525 amidophosphoribosyltr 100.0 3.9E-27 8.4E-32 214.4 17.6 149 6-157 84-250 (445)
16 PRK06388 amidophosphoribosyltr 99.9 4.7E-27 1E-31 214.9 16.7 149 6-157 101-266 (474)
17 PRK07272 amidophosphoribosyltr 99.9 6.3E-27 1.4E-31 214.5 17.2 149 6-157 95-260 (484)
18 PRK07349 amidophosphoribosyltr 99.9 1.2E-26 2.6E-31 213.3 18.1 150 6-157 117-287 (500)
19 cd03766 Gn_AT_II_novel Gn_AT_I 99.9 4E-27 8.6E-32 191.2 11.3 115 5-131 62-179 (181)
20 PRK07847 amidophosphoribosyltr 99.9 2.7E-26 5.9E-31 211.3 17.3 149 6-157 107-277 (510)
21 PRK06781 amidophosphoribosyltr 99.9 3.9E-26 8.4E-31 208.9 18.1 150 5-157 93-258 (471)
22 PRK08341 amidophosphoribosyltr 99.9 9.6E-26 2.1E-30 204.9 19.1 132 5-141 82-223 (442)
23 PRK09123 amidophosphoribosyltr 99.9 5.8E-26 1.2E-30 208.2 17.7 150 5-157 104-270 (479)
24 cd00714 GFAT Glutamine amidotr 99.9 1.1E-25 2.5E-30 186.8 15.1 124 6-134 83-214 (215)
25 PRK05793 amidophosphoribosyltr 99.9 1.6E-25 3.5E-30 204.9 16.7 149 6-157 99-263 (469)
26 cd00715 GPATase_N Glutamine am 99.9 4.2E-25 9.2E-30 187.2 17.5 136 5-142 82-226 (252)
27 PLN02440 amidophosphoribosyltr 99.9 5.2E-25 1.1E-29 202.0 16.3 131 6-138 84-222 (479)
28 cd01907 GlxB Glutamine amidotr 99.9 7.9E-25 1.7E-29 185.7 14.2 124 6-134 96-248 (249)
29 TIGR01134 purF amidophosphorib 99.9 4.3E-24 9.3E-29 194.3 18.7 149 6-157 84-248 (442)
30 PRK00331 glucosamine--fructose 99.9 2.9E-24 6.3E-29 201.6 16.9 133 6-143 84-225 (604)
31 PRK09246 amidophosphoribosyltr 99.9 1.9E-24 4.2E-29 199.3 15.2 133 5-138 83-235 (501)
32 cd00352 Gn_AT_II Glutamine ami 99.9 1.8E-24 3.9E-29 177.0 12.6 129 5-133 86-220 (220)
33 TIGR01135 glmS glucosamine--fr 99.9 7.3E-24 1.6E-28 199.0 15.5 133 6-143 83-224 (607)
34 PTZ00295 glucosamine-fructose- 99.9 1.5E-23 3.3E-28 198.2 16.1 133 6-143 114-255 (640)
35 PF13522 GATase_6: Glutamine a 99.9 3.1E-23 6.7E-28 160.4 11.1 100 5-112 30-133 (133)
36 COG0034 PurF Glutamine phospho 99.9 5.1E-22 1.1E-26 178.2 13.8 150 6-157 90-258 (470)
37 PTZ00394 glucosamine-fructose- 99.9 1E-21 2.2E-26 186.6 15.5 133 6-142 116-279 (670)
38 PLN02981 glucosamine:fructose- 99.9 7.7E-21 1.7E-25 181.0 14.7 134 6-143 105-277 (680)
39 KOG0572 Glutamine phosphoribos 99.8 5.3E-20 1.1E-24 161.9 13.0 177 6-184 87-305 (474)
40 COG0449 GlmS Glucosamine 6-pho 99.8 2.3E-19 4.9E-24 166.7 11.7 129 5-140 84-219 (597)
41 cd00713 GltS Glutamine amidotr 99.7 2.4E-16 5.2E-21 142.0 14.2 122 5-135 219-392 (413)
42 cd01908 YafJ Glutamine amidotr 99.6 3.1E-15 6.8E-20 127.1 12.3 123 6-137 99-256 (257)
43 TIGR03442 conserved hypothetic 99.6 1.8E-14 3.9E-19 122.5 12.5 123 6-140 102-247 (251)
44 PF00310 GATase_2: Glutamine a 99.5 1.7E-13 3.6E-18 122.1 11.2 101 5-113 213-361 (361)
45 KOG0573 Asparagine synthase [A 99.4 2.3E-12 5E-17 115.9 10.3 111 6-130 61-171 (520)
46 PRK11750 gltB glutamate syntha 99.2 1.3E-10 2.9E-15 116.9 12.4 122 6-135 231-402 (1485)
47 KOG1268 Glucosamine 6-phosphat 99.1 2E-10 4.3E-15 105.2 9.3 93 7-102 99-203 (670)
48 PF13230 GATase_4: Glutamine a 98.4 2.7E-06 5.9E-11 73.3 10.6 126 6-138 90-251 (271)
49 PF09147 DUF1933: Domain of un 98.4 4.6E-06 1E-10 67.4 10.9 109 16-134 48-185 (201)
50 COG0067 GltB Glutamate synthas 98.3 1.9E-06 4.1E-11 77.0 7.4 123 5-139 220-362 (371)
51 COG0121 Predicted glutamine am 93.8 0.32 7E-06 41.6 7.8 41 7-48 90-133 (252)
52 KOG0399 Glutamate synthase [Am 92.1 0.79 1.7E-05 47.2 8.6 69 64-134 405-475 (2142)
53 PF04566 RNA_pol_Rpb2_4: RNA p 80.3 8.4 0.00018 25.9 5.9 47 42-99 12-60 (63)
54 COG0067 GltB Glutamate synthas 74.7 6.2 0.00014 35.7 5.1 49 64-114 322-370 (371)
55 KOG0876 Manganese superoxide d 55.5 46 0.001 28.3 6.4 82 17-102 91-183 (234)
56 PF07981 Plasmod_MYXSPDY: Plas 45.9 9.2 0.0002 19.0 0.5 6 1-6 1-6 (17)
57 TIGR03823 FliZ flagellar regul 45.0 15 0.00033 29.4 1.8 19 15-33 33-51 (168)
58 PRK11582 flagella biosynthesis 44.7 16 0.00034 29.3 1.9 19 15-33 33-51 (169)
59 COG4256 HemP Hemin uptake prot 39.7 15 0.00032 24.7 0.9 22 8-29 31-52 (63)
60 KOG1227 Putative methyltransfe 36.8 38 0.00082 30.2 3.2 49 4-52 146-203 (351)
61 PF08973 TM1506: Domain of unk 29.8 15 0.00033 28.5 -0.4 27 70-99 10-36 (134)
62 PRK07225 DNA-directed RNA poly 28.0 1.9E+02 0.0042 27.9 6.7 62 18-102 6-69 (605)
63 PF04641 Rtf2: Rtf2 RING-finge 23.7 48 0.001 28.2 1.6 30 4-36 38-67 (260)
64 PF12532 DUF3732: Protein of u 20.9 27 0.00058 28.6 -0.5 14 174-187 65-78 (193)
No 1
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=100.00 E-value=2.6e-48 Score=322.66 Aligned_cols=165 Identities=67% Similarity=1.150 Sum_probs=154.2
Q ss_pred CCCCCCeeecCCcEEEEEEEEEcchHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCCchHHHHhhccccceEEEEEECCCC
Q 029311 4 SQNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAG 83 (195)
Q Consensus 4 ~~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~~~s~sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FAfvl~D~~~~ 83 (195)
+|..|.+++.+++++|++||+|||+.+||++|..+++.+|+|+|+++|++++++|++++.+++++|+|+|||||||++++
T Consensus 60 ~~~~~rl~~~~~~~~~vfnGeIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~ 139 (224)
T cd01910 60 SPLHPRLFAVKDDIFCLFQGHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTS 139 (224)
T ss_pred CcccCcEECCCCCEEEEEEeEEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCC
Confidence 57778889999999999999999999999999777888999999999998777797777799999999999999999999
Q ss_pred EEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEEeCCceEEEecCCCccccccCCCCccceec
Q 029311 84 TIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSEQGLMSFEHPTREMKAMPRIDSEGVMCG 163 (195)
Q Consensus 84 ~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~~~~g~~~y~~p~~~~~~~~~~d~~~~~~~ 163 (195)
++++||||+|++||||+.+.+|.++||||+++|...|++.+++|||||||.+.+|+++|++|.|+++++||+|++++|||
T Consensus 140 ~l~lARD~~Gi~PLYyg~~~dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s~ggl~~~~~p~~~~~~vp~~~s~g~~cg 219 (224)
T cd01910 140 TVFVASDADGSVPLYWGIAADGSVVFSDDVELVKASCGKSFAPFPKGCFFHSEGGLRSFEHPMNKLKAVPRVDSEGEMCG 219 (224)
T ss_pred EEEEEEcCCCCcceEEEEeCCCEEEEEeCHHHhhhhhccEEEEECCCCEEeCCCCEEEeeCCCchhhcCCcccCcccEec
Confidence 99999999999999999886789999999999999998789999999999886569999999999999999999999999
Q ss_pred ccEEE
Q 029311 164 ANFKV 168 (195)
Q Consensus 164 ~~~~v 168 (195)
++|+|
T Consensus 220 ~~f~v 224 (224)
T cd01910 220 ATFKV 224 (224)
T ss_pred ceeeC
Confidence 99997
No 2
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=100.00 E-value=3.1e-40 Score=271.09 Aligned_cols=164 Identities=70% Similarity=1.223 Sum_probs=157.7
Q ss_pred CCCCCeeecCCcEEEEEEEEEcchHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCCchHHHHhhccccceEEEEEECCCCE
Q 029311 5 QNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGT 84 (195)
Q Consensus 5 ~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~~~s~sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FAfvl~D~~~~~ 84 (195)
|..|.+|..-+++.|+|-|.|+|...|+++|+..++.+++.+|+++|++++++|++++.+++++|+|.|||||||..+++
T Consensus 65 ~l~pR~F~~~DdIfCiF~G~L~Nl~~L~qqYGLsK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~t 144 (228)
T PF12481_consen 65 SLHPRLFAGVDDIFCIFLGSLENLCSLRQQYGLSKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGT 144 (228)
T ss_pred ccccccccccCCEEEEEecchhhHHHHHHHhCcCcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCc
Confidence 45566777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEEeCCceEEEecCCCccccccCCCCccceecc
Q 029311 85 IFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSEQGLMSFEHPTREMKAMPRIDSEGVMCGA 164 (195)
Q Consensus 85 l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~~~~g~~~y~~p~~~~~~~~~~d~~~~~~~~ 164 (195)
+++|||+.|..|||||++.||.++||++...|...|++...+||+|++|.+++|+++|.+|.++++++||+|++|+|||+
T Consensus 145 vf~A~d~~G~vpLyWGi~~DGslv~Sdd~~~ik~~C~kS~ApFP~Gc~f~S~~Gl~sfehP~nk~k~~prvDseG~~cGa 224 (228)
T PF12481_consen 145 VFVARDSDGSVPLYWGIAADGSLVFSDDLELIKEGCGKSFAPFPAGCFFSSEGGLRSFEHPKNKVKAMPRVDSEGQMCGA 224 (228)
T ss_pred EEEeecCCCCcceEEEEeCCCCEEEcCCHHHHHhhhhhccCCCCcceEEEecCceEeecCCcccccccccccCcccCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEE
Q 029311 165 NFKV 168 (195)
Q Consensus 165 ~~~v 168 (195)
+|+|
T Consensus 225 ~FkV 228 (228)
T PF12481_consen 225 TFKV 228 (228)
T ss_pred eeeC
Confidence 9997
No 3
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=2.6e-39 Score=301.83 Aligned_cols=163 Identities=21% Similarity=0.368 Sum_probs=143.8
Q ss_pred CCCCCeeecCCcEEEEEEEEEcchHHHHHHhc--CCCCCCHHHHHHHHHHHHHhcCCchHHHHhhccccceEEEEEECCC
Q 029311 5 QNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYG--LSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKA 82 (195)
Q Consensus 5 ~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~--~~~s~sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FAfvl~D~~~ 82 (195)
.+.||+++.++++++++||||||+.+||++|. .|++.+|+|+|+++|+ ++|. +++++|+|+|||||||.++
T Consensus 58 ~g~QP~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~f~t~sD~Evil~ly~---~~G~----~~~~~L~G~FAf~i~D~~~ 130 (578)
T PLN02549 58 SGDQPLYNEDKTIVVTANGEIYNHKELREKLKLHKFRTGSDCEVIAHLYE---EHGE----EFVDMLDGMFSFVLLDTRD 130 (578)
T ss_pred CCCCCcCcCCCCEEEEEEEEEEcHHHHHHHHHhCCCCCCCHHHHHHHHHH---HHHH----HHHHhCCCceEEEEEECCC
Confidence 47999999999999999999999999999986 4889999999999998 5775 8999999999999999988
Q ss_pred CEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEEeCCc-eEEEecCCCccccccC-------
Q 029311 83 GTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSEQG-LMSFEHPTREMKAMPR------- 154 (195)
Q Consensus 83 ~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~~~~g-~~~y~~p~~~~~~~~~------- 154 (195)
+++++||||+|++||||+.+.+|.++||||+++|...| +.|.+|||||++..++| +++||+|.|..+..+.
T Consensus 131 ~~l~~aRD~~GikPLyyg~~~~g~~~fASE~KaL~~~~-~~I~~lpPGh~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 209 (578)
T PLN02549 131 NSFIAARDHIGITPLYIGWGLDGSVWFASEMKALCDDC-ERFEEFPPGHYYSSKAGGFRRWYNPPWFSESIPSTPYDPLV 209 (578)
T ss_pred CEEEEEECCCCCCCeEEEEecCCeEEEEecHHHHHHHh-CCEEEeCCCeEEEEcCCCEEEEEecccCccccCCchhHHHH
Confidence 99999999999999999987567899999999999887 57999999999887655 8999999885332211
Q ss_pred -------CCCccceecccEEEEeccCCC
Q 029311 155 -------IDSEGVMCGANFKVDVQSRMR 175 (195)
Q Consensus 155 -------~d~~~~~~~~~~~v~~~~~l~ 175 (195)
...+++++++|++|.||||||
T Consensus 210 lr~~L~~aV~~rl~sdvpvgv~LSGGLD 237 (578)
T PLN02549 210 LREAFEKAVIKRLMTDVPFGVLLSGGLD 237 (578)
T ss_pred HHHHHHHHHHHHhccCCceeEeecCCcc
Confidence 112578999999999999999
No 4
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=100.00 E-value=6.7e-39 Score=298.07 Aligned_cols=163 Identities=20% Similarity=0.383 Sum_probs=143.6
Q ss_pred CCCCCeeecCCcEEEEEEEEEcchHHHHHHhcC---CCCCCHHHHHHHHHHHHHhcCCchHHHHhhccccceEEEEEECC
Q 029311 5 QNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGL---SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCK 81 (195)
Q Consensus 5 ~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~---~~s~sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FAfvl~D~~ 81 (195)
-+.||+++.++++++++||||||+.+||++|.. |++.+|+|+|+++|+ ++|. +++++|+|+|||||||.+
T Consensus 58 ~g~QP~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~~f~t~sD~Evil~ly~---~~G~----~~~~~L~G~FAf~i~D~~ 130 (554)
T PRK09431 58 GGAQPLYNEDGTHVLAVNGEIYNHQELRAELGDKYAFQTGSDCEVILALYQ---EKGP----DFLDDLDGMFAFALYDSE 130 (554)
T ss_pred CCCCCCCcCCCCEEEEEEEEEecHHHHHHHHhccCCcCCCCHHHHHHHHHH---HHHH----HHHHhCCCceEEEEEECC
Confidence 489999999999999999999999999999863 789999999999998 5775 899999999999999998
Q ss_pred CCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEEeCCc-eEEEecCCCccc-cccC-----
Q 029311 82 AGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSEQG-LMSFEHPTREMK-AMPR----- 154 (195)
Q Consensus 82 ~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~~~~g-~~~y~~p~~~~~-~~~~----- 154 (195)
++++++||||+|++||||+.++++.++||||+++|...| +.|.+|||||++..++| +++||++.|... ..+.
T Consensus 131 ~~~l~laRD~~GikPLyy~~~~~~~~~faSE~kaL~~~~-~~I~~lpPGh~l~~~~g~~~~y~~~~~~~~~~~~~~~~~~ 209 (554)
T PRK09431 131 KDAYLIARDPIGIIPLYYGYDEHGNLYFASEMKALVPVC-KTIKEFPPGHYYWSKDGEFVRYYQRDWFDYDAVKDNVTDK 209 (554)
T ss_pred CCEEEEEeCCCCCcceEEEEeCCCeEEEecchHHHHHhc-CCEEEECCCeEEEECCCcEEEecCCCcccccccCCHHHHH
Confidence 999999999999999999998557999999999999888 67999999999887777 899999887421 1111
Q ss_pred ---------CCCccceecccEEEEeccCCC
Q 029311 155 ---------IDSEGVMCGANFKVDVQSRMR 175 (195)
Q Consensus 155 ---------~d~~~~~~~~~~~v~~~~~l~ 175 (195)
...+++++++|+||.||||||
T Consensus 210 ~~lr~~L~~aV~~rl~sdvpvGv~LSGGLD 239 (554)
T PRK09431 210 NELRDALEAAVKKRLMSDVPYGVLLSGGLD 239 (554)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEcCCCcc
Confidence 112578999999999999999
No 5
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-40 Score=290.14 Aligned_cols=165 Identities=23% Similarity=0.391 Sum_probs=149.6
Q ss_pred CCCCCCeeecCCcEEEEEEEEEcchHHHHHHhcC--CCCCCHHHHHHHHHHHHHhcCCchHHHHhhccccceEEEEEECC
Q 029311 4 SQNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGL--SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCK 81 (195)
Q Consensus 4 ~~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~--~~s~sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FAfvl~D~~ 81 (195)
.|+.||+++.++.+++.+||||||+++||+.+.. ++|.+|+|+|+++|+ +.|. .+++..|+|+|||+++|.+
T Consensus 56 ~sg~QPi~~~~~~~~~~vNGEIYNH~~Lr~~~~~~~~~T~sDcEvIi~lY~---khg~---~~~~~~LDG~Fafvl~d~~ 129 (543)
T KOG0571|consen 56 TSGAQPIVGEDGTYVVTVNGEIYNHKKLREHCKDFEFQTGSDCEVIIHLYE---KHGG---EQAICMLDGVFAFVLLDTK 129 (543)
T ss_pred CcCCcccccCCCcEEEEECceeccHHHHHHHhhhcccccCCCceeeeehHh---hcCc---hhHHHHhhhheEEEEecCC
Confidence 6899999999999999999999999999999884 889999999999998 4533 4999999999999999999
Q ss_pred CCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEEeCCc-eEEEecCCCccccccC--CC--
Q 029311 82 AGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSEQG-LMSFEHPTREMKAMPR--ID-- 156 (195)
Q Consensus 82 ~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~~~~g-~~~y~~p~~~~~~~~~--~d-- 156 (195)
.+++++|||++|++|||||.+.+|.++||||+|+|...|. .|+.|||||+|.++.| +.+|++|.|..+.+|. .|
T Consensus 130 ~~kv~~aRDpiGv~~lY~g~~~~gs~~~aSe~k~l~d~C~-~i~~fpPgh~y~~~~~~~~r~f~p~w~~~~~~s~p~d~~ 208 (543)
T KOG0571|consen 130 DDKVVAARDPIGVTPLYYGWDSDGSVYFASEMKCLEDDCE-KIESFPPGHYYTSKTGKLTRYFNPEWFDENIPSTPLDYL 208 (543)
T ss_pred CCeEEeccCCcCceeeEEEecCCCcEEEeeehhhhhhhhh-ceeecCCcceeecccccccCCCCchhhhccCCCCcccHH
Confidence 9999999999999999999998899999999999999995 5899999999998866 9999999998774322 22
Q ss_pred ----------CccceecccEEEEeccCCC
Q 029311 157 ----------SEGVMCGANFKVDVQSRMR 175 (195)
Q Consensus 157 ----------~~~~~~~~~~~v~~~~~l~ 175 (195)
.||+|.++||||+||||||
T Consensus 209 ~~r~~~~~aV~KRLM~d~p~GvLLSGGLD 237 (543)
T KOG0571|consen 209 ALRHTLEKAVRKRLMTDVPFGVLLSGGLD 237 (543)
T ss_pred HHHHHHHHHHHHHhhccCceeEEeeCCch
Confidence 2799999999999999999
No 6
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=297.78 Aligned_cols=165 Identities=23% Similarity=0.384 Sum_probs=142.6
Q ss_pred CCCCCCeeecCCcEEEEEEEEEcchHHHHHHhc----CCCCCCHHHHHHHHHHHHHhcCCchHHHHhhccccceEEEEEE
Q 029311 4 SQNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYD 79 (195)
Q Consensus 4 ~~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~----~~~s~sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FAfvl~D 79 (195)
+.+.||+++.+++++++|||||||+.+||++|. .|++.+|+|+|+++|+ ++|. .+++++|+|+|||+|||
T Consensus 62 ~~g~QP~~~~d~~~~lv~NGEIYN~~eLr~~L~~~g~~f~t~sD~Evil~ly~---~~G~---~~~l~~L~G~FAf~i~D 135 (586)
T PTZ00077 62 SDGKQPLLDDDETVALMQNGEIYNHWEIRPELEKEGYKFSSNSDCEIIGHLYK---EYGP---KDFWNHLDGMFATVIYD 135 (586)
T ss_pred CCCCCCcCCCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHH---HhCH---HHHHHhcCCCEEEEEEE
Confidence 348999999999999999999999999999985 2889999999999999 5773 27999999999999999
Q ss_pred CCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEEeCC--c-eEEEecCCCcccc--ccC
Q 029311 80 CKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSEQ--G-LMSFEHPTREMKA--MPR 154 (195)
Q Consensus 80 ~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~~~~--g-~~~y~~p~~~~~~--~~~ 154 (195)
.+++++++||||+|++||||+...+|.++||||+++|...| +.|.+|||||++..++ + +++||+|.|.... .+.
T Consensus 136 ~~~~~l~~aRD~~GikPLyy~~~~~g~~~faSE~kaL~~~~-~~I~~lpPGh~l~~~~~~~~~~~y~~~~~~~~~~~~~~ 214 (586)
T PTZ00077 136 MKTNTFFAARDHIGIIPLYIGYAKDGSIWFSSELKALHDQC-VEVKQFPPGHYYDQTKEKGEFVRYYNPNWHDFDHPIPT 214 (586)
T ss_pred CCCCEEEEEECCCCCcCeEEEEecCCeEEEEecHHHHHHhc-CCEEEeCCCcEEEecCCcceeEEecCCcccccccCCCC
Confidence 98999999999999999999986567899999999999887 5799999999987653 3 8899999875321 111
Q ss_pred --------------CCCccceecccEEEEeccCCC
Q 029311 155 --------------IDSEGVMCGANFKVDVQSRMR 175 (195)
Q Consensus 155 --------------~d~~~~~~~~~~~v~~~~~l~ 175 (195)
...+++++++|+||.||||||
T Consensus 215 ~~~~~~~lr~~L~~AV~~rl~sdvpvGv~LSGGLD 249 (586)
T PTZ00077 215 GEIDLEEIREALEAAVRKRLMGDVPFGLFLSGGLD 249 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceEEEecCCch
Confidence 112578999999999999999
No 7
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-36 Score=277.90 Aligned_cols=163 Identities=13% Similarity=0.250 Sum_probs=143.1
Q ss_pred CCCCCCeeecCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCchHHHHhhccccceEEEEEE
Q 029311 4 SQNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYD 79 (195)
Q Consensus 4 ~~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FAfvl~D 79 (195)
+.+.||+...+++++++|||||||+.|||++|.. |.|.+|+|+|+++|+ +||. +++++|+|+|||++||
T Consensus 56 ~~g~QP~~~~~~~~~l~~NGEIYN~~elr~~l~~~g~~f~t~sDtEvil~~y~---~~g~----~~~~~l~G~fAfai~d 128 (542)
T COG0367 56 SGGRQPMIKEGGKYAIVYNGEIYNVEELRKELREAGYEFRTYSDTEVILTLYE---EWGE----DCVEHLNGMFAFAIYD 128 (542)
T ss_pred ccCCCCcccCCCcEEEEECCEeeeHHHHHHHHHhcCceeccccchHHHHHHHH---HHHH----HHHHHhccceEEEEEE
Confidence 4588999987788999999999999999999983 899999999999999 5775 8999999999999999
Q ss_pred CCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhh-----ccCceEEecCCeEEEeC-Cc-eEEEecCCCcccc-
Q 029311 80 CKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKAS-----CAKSFAPFPAGCMFHSE-QG-LMSFEHPTREMKA- 151 (195)
Q Consensus 80 ~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~-----~~~~i~~lppG~~~~~~-~g-~~~y~~p~~~~~~- 151 (195)
.++++|+++|||+|+|||||+.++ +.++||||.|+|... + +.|.+|||||+++.+ ++ +.+||++.+....
T Consensus 129 ~~~~~l~laRD~~GikPLyy~~~~-~~l~faSE~Kal~~~~~~~~~-~~i~~l~pg~~l~~~~~~~~~~y~~~~~~~~~~ 206 (542)
T COG0367 129 ETRQKLFLARDPFGVKPLYYTSKN-ENLAFASEIKALLAHPVVRFL-RDIKELPPGHLLEFTDGGLIRRYWRLSEKTSKE 206 (542)
T ss_pred CCCCEEEEEecCCCccccEEEecC-CceEEEechhhhhhCCccccc-CCeEEcCCCcEEEEcCCCceeeeeccccccccc
Confidence 999999999999999999999985 679999999999987 6 579999999997765 56 9999998887553
Q ss_pred cc------------CCCCccceecccEEEEeccCCC
Q 029311 152 MP------------RIDSEGVMCGANFKVDVQSRMR 175 (195)
Q Consensus 152 ~~------------~~d~~~~~~~~~~~v~~~~~l~ 175 (195)
.. +...++++.++|.++.+|||||
T Consensus 207 ~~~~~~~~l~~~l~~sV~~r~~advpvg~~lSGGlD 242 (542)
T COG0367 207 SADELAEHLRSLLEDAVKRRLVADVPVGVFLSGGLD 242 (542)
T ss_pred chHHHHHHHHHHHHHHHHHHhccCCcEEEEeCCCcc
Confidence 10 0111567899999999999999
No 8
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=100.00 E-value=1e-33 Score=265.11 Aligned_cols=163 Identities=14% Similarity=0.209 Sum_probs=135.1
Q ss_pred CCCCCeeecCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCchHHHHhhccccceEEEEEEC
Q 029311 5 QNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDC 80 (195)
Q Consensus 5 ~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FAfvl~D~ 80 (195)
.+.||+.+.+++++++|||+|||+.|||++|.. |.+.+|+|+|+++|+ +||. +++++|+|+|||++||.
T Consensus 58 ~~~QP~~~~~~~~~~v~nGeiyN~~eL~~~l~~~g~~f~~~sD~Evil~~y~---~~G~----~~~~~l~G~fa~~i~d~ 130 (589)
T TIGR03104 58 ASQQPMVDAELGLALVFNGCIYNYRELRAELEALGYRFFSDGDTEVILKAYH---AWGR----DCVSRFNGMFAFAIWER 130 (589)
T ss_pred CCCCCeECCCCCEEEEECCEecCHHHHHHHHHhcCCcccCCCHHHHHHHHHH---HHHH----HHHHHhhcceEEEEEeC
Confidence 478999999999999999999999999999862 789999999999998 5775 99999999999999999
Q ss_pred CCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhc---------------------------cCceEEecCCeEE
Q 029311 81 KAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASC---------------------------AKSFAPFPAGCMF 133 (195)
Q Consensus 81 ~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~---------------------------~~~i~~lppG~~~ 133 (195)
.++++++||||+|++||||... ++.++||||+++|.... -++|..+||||++
T Consensus 131 ~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaLl~~~~~~~~~d~~~l~~~l~~~~~~~~~~T~~~gI~~l~pG~~l 209 (589)
T TIGR03104 131 DSGRLLLARDRLGIKPLYYAED-AGRLRFASSLPALLAAGGVDTDIDPVALHHYLTFHAVVPAPHTILKGVRKLPPATWM 209 (589)
T ss_pred CCCEEEEEecCCCCCCeEEEEe-CCEEEEEeCHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCCCchhhCceeeCCCcEE
Confidence 9999999999999999999987 47899999999986421 1578899999997
Q ss_pred Ee-CCc---eEEEecCCCcccc----c-------------cCCCCccceecccEEEEeccCCC
Q 029311 134 HS-EQG---LMSFEHPTREMKA----M-------------PRIDSEGVMCGANFKVDVQSRMR 175 (195)
Q Consensus 134 ~~-~~g---~~~y~~p~~~~~~----~-------------~~~d~~~~~~~~~~~v~~~~~l~ 175 (195)
+. .+| .++||+|...... . .+....++.+++|.++.||||||
T Consensus 210 ~i~~~~~~~~~~yw~~~~~~~~~~~~~~~~~~~~~l~~~L~~AV~~rl~sd~pvg~~LSGGlD 272 (589)
T TIGR03104 210 TVEPDGSRTQRSYWSLDAGRPADDAARTEADWQDAILEALRLAVKRRLVADVPVGVLLSGGLD 272 (589)
T ss_pred EEECCCCeEEEeeccCCCCcccccCCCCHHHHHHHHHHHHHHHHHHHhhcCCceeEEecCCcc
Confidence 65 344 5689987532100 0 00111456789999999999999
No 9
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=100.00 E-value=6.7e-33 Score=252.79 Aligned_cols=164 Identities=16% Similarity=0.241 Sum_probs=132.8
Q ss_pred CCCCCeeecCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCchHHHHhhccccceEEEEEEC
Q 029311 5 QNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDC 80 (195)
Q Consensus 5 ~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FAfvl~D~ 80 (195)
.+.||+.+.+++++++|||+|||+.+|+++|.. |++.+|+|+|+++|+ +||. +++++|+|+|||++||.
T Consensus 56 ~~~qP~~~~~~~~~lv~nGeiyN~~eL~~~l~~~g~~~~~~~D~e~il~~y~---~~g~----~~~~~l~G~fa~~i~D~ 128 (467)
T TIGR01536 56 GGAQPMSNEGKTYVIVFNGEIYNHEELREELEAKGYTFQTDSDTEVILHLYE---EWGE----ECVDRLDGMFAFALWDS 128 (467)
T ss_pred CCCCeeECCCCCEEEEEeeEEcCHHHHHHHHHhcCCccCCCCHHHHHHHHHH---HHHH----HHHHHcCCcEEEEEEEC
Confidence 458999999999999999999999999999862 789999999999998 5674 89999999999999999
Q ss_pred CCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhc---------------------------cCceEEecCCeEE
Q 029311 81 KAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASC---------------------------AKSFAPFPAGCMF 133 (195)
Q Consensus 81 ~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~---------------------------~~~i~~lppG~~~ 133 (195)
++++++++||++|++||||+.+ ++.++||||+++|...+ -++|..+||||++
T Consensus 129 ~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaL~~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~I~~l~pG~~l 207 (467)
T TIGR01536 129 KKGELFLARDRFGIKPLYYAYD-GGQLYFASEIKALLAHPRNIKPFPDGAALAPGFGFVRVPPPSTFFRGVFELEPGHDL 207 (467)
T ss_pred CCCEEEEEECCCCCcCeEEEEE-CCEEEEEecHHHHHhccccCcCCCCHHHHHHHhccCccCCCCcccCCcEEcCCCeEE
Confidence 9999999999999999999998 47999999999986432 1578899999997
Q ss_pred EeC-Cc---eEEEecCCCccc-----cc-------cCCCCccceecccEEEEeccCCCC
Q 029311 134 HSE-QG---LMSFEHPTREMK-----AM-------PRIDSEGVMCGANFKVDVQSRMRS 176 (195)
Q Consensus 134 ~~~-~g---~~~y~~p~~~~~-----~~-------~~~d~~~~~~~~~~~v~~~~~l~~ 176 (195)
..+ ++ .+.||.+..... ++ .+....++.++++.++.|||||||
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~l~~aV~~r~~~~~~vg~~LSGGlDS 266 (467)
T TIGR01536 208 PLEDDGLNIERYYWERRDEHTDSEEDLVDELRSLLEDAVKRRLVADVPVGVLLSGGLDS 266 (467)
T ss_pred EEeCCCceEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHhccCCceEEEecCChhH
Confidence 654 34 345655221100 00 111124556899999999999993
No 10
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=100.00 E-value=1.7e-32 Score=225.59 Aligned_cols=127 Identities=21% Similarity=0.228 Sum_probs=107.9
Q ss_pred CCCeeecCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCchHHHHhhccccceEEEEEECCC
Q 029311 7 WRRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKA 82 (195)
Q Consensus 7 ~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FAfvl~D~~~ 82 (195)
.|.. ..+++++++||||||+.+||++|.. |++.+|+|+|+++|+ +||. +++++|+|+|||+|||++
T Consensus 44 ~~~~--~~~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~---~~G~----~~l~~L~G~FAfai~D~~- 113 (199)
T cd01909 44 VQVA--RSETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLT---RLGL----HAFRLAEGDFCFFIEDGN- 113 (199)
T ss_pred eeEe--eCCCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHH---HHhH----HHHHHcCEEEEEEEEcCC-
Confidence 4443 3457999999999999999999853 789999999999999 6886 999999999999999998
Q ss_pred CEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhc-----------------cCceEEecCCeEEEe-CC----c--
Q 029311 83 GTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASC-----------------AKSFAPFPAGCMFHS-EQ----G-- 138 (195)
Q Consensus 83 ~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~-----------------~~~i~~lppG~~~~~-~~----g-- 138 (195)
+++++||||+|+|||||..+ +.++||||+|+|.... -++|.+|||||++.. .+ +
T Consensus 114 ~~L~laRDr~GikPLYy~~~--~~l~FASEikaLla~~~~~~~~d~~~~~~~~T~~~gI~rL~PG~~l~~~~~g~~~~~~ 191 (199)
T cd01909 114 GRLTLATDHAGSVPVYLVQA--GEVWATTELKLLAAHEGPKAFPFKSAGADTVSGLTGVQRVPPGTVNVLTFDGGSYGTA 191 (199)
T ss_pred CEEEEEECCCCCcCeEEEEC--CeEEEEeCHHHHhhCcCCCcccCcccCCCCCChhcCceEECCCcEEEEeeCCcccceE
Confidence 99999999999999999876 5899999999997431 156999999999643 22 2
Q ss_pred -eEEEecC
Q 029311 139 -LMSFEHP 145 (195)
Q Consensus 139 -~~~y~~p 145 (195)
.++||+|
T Consensus 192 ~~~~yW~p 199 (199)
T cd01909 192 ESRRTWTP 199 (199)
T ss_pred EEEEeecC
Confidence 5678876
No 11
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=99.98 E-value=2e-32 Score=257.75 Aligned_cols=164 Identities=16% Similarity=0.239 Sum_probs=133.9
Q ss_pred CCCCCeeecCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCchHHHHhhccccceEEEEEEC
Q 029311 5 QNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDC 80 (195)
Q Consensus 5 ~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FAfvl~D~ 80 (195)
-+.||+++.+++++++|||+|||+.||+++|.. |.+.+|+|+|+++|+ ++|. +++++|+|+|||++||.
T Consensus 58 ~~~qP~~~~~~~~~lv~nGei~N~~eL~~~l~~~g~~~~~~sD~Evi~~~~~---~~g~----~~~~~l~G~fa~~~~d~ 130 (628)
T TIGR03108 58 GGQQPLFNEDGSVVVVFNGEIYNFQELVAELQALGHVFRTRSDTEVIVHAWE---EWGE----ACVERFRGMFAFALWDR 130 (628)
T ss_pred CCCCCcCcCCCCEEEEECCeECCHHHHHHHHHhcCCccCCCChHHHHHHHHH---HHHH----HHHHHcCCCEEEEEEEC
Confidence 378999999999999999999999999999852 789999999999998 5674 89999999999999999
Q ss_pred CCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhc--------------------------cCceEEecCCeEEE
Q 029311 81 KAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASC--------------------------AKSFAPFPAGCMFH 134 (195)
Q Consensus 81 ~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~--------------------------~~~i~~lppG~~~~ 134 (195)
.+++++++||++|++||||+...++.++||||+++|.... -++|+.+||||++.
T Consensus 131 ~~~~l~~~rD~~G~~PLyy~~~~~~~~~faSe~~al~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~gI~~l~pG~~l~ 210 (628)
T TIGR03108 131 NQETLFLARDRLGIKPLYYALLADGWFIFGSELKALTAHPSLPRELDPLAVEDYFAYGYVPDPRTIFKGVKKLEPGHTLT 210 (628)
T ss_pred CCCEEEEEECCCCCcceEEEEeCCCEEEEEecHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCCchhcCcEEECCCeEEE
Confidence 9999999999999999999986457899999999986421 15799999999965
Q ss_pred eC-Cc----eEEEecCCCcccc-c-------------cCCCCccceecccEEEEeccCCC
Q 029311 135 SE-QG----LMSFEHPTREMKA-M-------------PRIDSEGVMCGANFKVDVQSRMR 175 (195)
Q Consensus 135 ~~-~g----~~~y~~p~~~~~~-~-------------~~~d~~~~~~~~~~~v~~~~~l~ 175 (195)
.+ ++ .++||++...... . .+....++..+++.++.||||||
T Consensus 211 ~~~~~~~~~~~~yw~~~~~~~~~~~~~e~~e~l~~~l~~aV~~rl~~d~~vg~~LSGGlD 270 (628)
T TIGR03108 211 LRRGAPPARPRCYWDVSFAPAAPLSEADALAELIERLREAVRSRMVADVPLGAFLSGGVD 270 (628)
T ss_pred EECCCcceeccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcceEeecCCcc
Confidence 44 32 3578886432100 0 00111356789999999999999
No 12
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=99.97 E-value=2e-30 Score=215.25 Aligned_cols=132 Identities=19% Similarity=0.349 Sum_probs=116.1
Q ss_pred CCCCCeeecCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCchHHHHhhccccceEEEEEEC
Q 029311 5 QNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDC 80 (195)
Q Consensus 5 ~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FAfvl~D~ 80 (195)
.+.||++..+++++++|||+|||+.+|+++|.. +.+.+|+|+|+++|+ ++|. +++++|+|+||||+||.
T Consensus 56 ~~~qP~~~~~~~~~~~~nG~i~N~~~L~~~l~~~~~~~~~~sD~e~l~~~~~---~~g~----~~~~~l~G~fa~vi~d~ 128 (220)
T cd00712 56 GGAQPMVSEDGRLVLVFNGEIYNYRELRAELEALGHRFRTHSDTEVILHLYE---EWGE----DCLERLNGMFAFALWDK 128 (220)
T ss_pred cCCCCeEeCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCChHHHHHHHHH---HHhH----HHHHHhhheEEEEEEEC
Confidence 478999998889999999999999999999863 688999999999998 5674 99999999999999999
Q ss_pred CCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhcc--------------------------CceEEecCCeEEE
Q 029311 81 KAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCA--------------------------KSFAPFPAGCMFH 134 (195)
Q Consensus 81 ~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~--------------------------~~i~~lppG~~~~ 134 (195)
++++++++|||+|.+||||+..+ +.++||||.++|...+. ++|++|||||++.
T Consensus 129 ~~~~l~~~rD~~G~~pLy~~~~~-~~~~~aSe~~~l~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~V~~l~pG~~l~ 207 (220)
T cd00712 129 RKRRLFLARDRFGIKPLYYGRDG-GGLAFASELKALLALPGVPRELDEAALAEYLAFQYVPAPRTIFKGIRKLPPGHYLT 207 (220)
T ss_pred CCCEEEEEECCCCCEeeEEEEEC-CEEEEEcchHHHHhcCCCCCCcCHHHHHHHHhcCCCCCCCchhcCceEECCceEEE
Confidence 88999999999999999999985 78999999999975321 5799999999976
Q ss_pred eCCc---eEEEec
Q 029311 135 SEQG---LMSFEH 144 (195)
Q Consensus 135 ~~~g---~~~y~~ 144 (195)
.+.| .++||+
T Consensus 208 ~~~~~~~~~~yw~ 220 (220)
T cd00712 208 VDPGGVEIRRYWD 220 (220)
T ss_pred EECCCeEEeeeCC
Confidence 5544 567774
No 13
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.96 E-value=1.4e-29 Score=193.50 Aligned_cols=109 Identities=19% Similarity=0.379 Sum_probs=74.5
Q ss_pred CCCCee-ecCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCchHHHHhhccccceEEEEEEC
Q 029311 6 NWRRWF-CGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDC 80 (195)
Q Consensus 6 ~~QP~~-~~~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FAfvl~D~ 80 (195)
..||+. +.++++++++||+|||+++|+++|.. +.+.+|+|+++++|+++.++|. +++++|+|.||||+||+
T Consensus 12 ~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~~~~----~~~~~l~G~fa~v~~d~ 87 (125)
T PF13537_consen 12 GAQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEEYREWGE----DFLKRLDGPFAFVIWDK 87 (125)
T ss_dssp -------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH---HGG----GGGGT--EEEEEEEEET
T ss_pred cccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHH----HHHHhCCceEEEEEEeC
Confidence 579999 68889999999999999999999974 6789999999999985444675 99999999999999999
Q ss_pred CCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhh
Q 029311 81 KAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKA 118 (195)
Q Consensus 81 ~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~ 118 (195)
++++++++|||+|+|||||+..+++.++||||+++|.+
T Consensus 88 ~~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L~a 125 (125)
T PF13537_consen 88 DKKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKALLA 125 (125)
T ss_dssp TE--EEEEE-TT--S--EEEEETT-EEEEESSHHHHHT
T ss_pred CCcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHhcC
Confidence 88899999999999999999995359999999999863
No 14
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.95 E-value=1.6e-27 Score=218.00 Aligned_cols=149 Identities=17% Similarity=0.181 Sum_probs=119.5
Q ss_pred CCCCee--ecCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhcCC-chHHHHhhccccceEEEEE
Q 029311 6 NWRRWF--CGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGP-YPAHQVLRDLDGSFGFVLY 78 (195)
Q Consensus 6 ~~QP~~--~~~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~~G~-~~~~~~l~~L~G~FAfvl~ 78 (195)
+.||++ +.+++++++|||+|+|+++||++|.. |++.+|+|+|+++|.+...... +.+.+++++|+|+|||+++
T Consensus 94 n~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~Li~~~~~~~~~eai~~~~~~l~G~yalvi~ 173 (475)
T PRK07631 94 NVQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHLIKRSGAPTLKEQIKNALSMLKGAYAFLLM 173 (475)
T ss_pred CcCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCceeeEE
Confidence 689996 45678999999999999999999862 8899999999999984321110 1245899999999999999
Q ss_pred ECCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEE-eCCceEEEec-C----CCc-cc-
Q 029311 79 DCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLMSFEH-P----TRE-MK- 150 (195)
Q Consensus 79 D~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~-~~~g~~~y~~-p----~~~-~~- 150 (195)
|. ++++++|||.|+||||||..+ +.++||||.+||...+.+.+++++||+++. +++|++.+.. + ..| +|
T Consensus 174 ~~--~~l~aaRDp~GirPL~~G~~~-~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g~~~~~~~~~~~~~~C~fE~ 250 (475)
T PRK07631 174 TE--TELYVALDPNGLRPLSIGRLG-DAYVVASETCAFDVIGATYEREVEPGELLIINDEGMRSERFAPNQNRSICSMEY 250 (475)
T ss_pred eC--CEEEEEECCCCCCCEEEEEeC-CEEEEEeChHHHhhcCcceEEEcCCCeEEEEECCcEEEEecCCCCCcccceEEE
Confidence 94 679999999999999999984 689999999999877666788999999855 5677665432 2 123 33
Q ss_pred -cccCCCC
Q 029311 151 -AMPRIDS 157 (195)
Q Consensus 151 -~~~~~d~ 157 (195)
++.|+||
T Consensus 251 iYfarpdS 258 (475)
T PRK07631 251 IYFARPDS 258 (475)
T ss_pred EEeecCCc
Confidence 4688887
No 15
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.95 E-value=3.9e-27 Score=214.37 Aligned_cols=149 Identities=17% Similarity=0.178 Sum_probs=118.0
Q ss_pred CCCCeee--cCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhcCC--chHHHHhhccccceEEEE
Q 029311 6 NWRRWFC--GLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGP--YPAHQVLRDLDGSFGFVL 77 (195)
Q Consensus 6 ~~QP~~~--~~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~~G~--~~~~~~l~~L~G~FAfvl 77 (195)
+.||+++ .+++++++|||+|||+.+||++|.. |++.+|+|+|+++|....+ +. +.+.+++++|+|+|||++
T Consensus 84 naqP~~~~~~~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l~~~~~~-~~~~ea~~~~~~~L~G~fa~vi 162 (445)
T PRK08525 84 DAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHLIARSKK-ESLKDRIIEALKKIIGAYCLVL 162 (445)
T ss_pred CCCCeEeecCCCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHhcCCceEEEE
Confidence 5899987 5688999999999999999999862 8899999999999974321 11 124589999999999999
Q ss_pred EECCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEEeC---CceEE--EecC--CCc-c
Q 029311 78 YDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSE---QGLMS--FEHP--TRE-M 149 (195)
Q Consensus 78 ~D~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~~~---~g~~~--y~~p--~~~-~ 149 (195)
+|. ++++++||++|+||||||...++.++||||.++|.....+.+++++||++++.+ +|+.. ++.+ ..| +
T Consensus 163 ~~~--~~l~~~RD~~GirPL~~g~~~~~~~~~ASE~~al~~~g~~~~~~~~pGe~v~i~~~~~~~~~~~~~~~~~~~c~f 240 (445)
T PRK08525 163 LSR--SKMFAIRDPHGVRPLSLGRLKDGGYIVASETCAFDLIGAEFIRDVKPGEMLIFEQGNDEFESIQLFEPTPRICAF 240 (445)
T ss_pred EeC--CEEEEEECCCCCCCeEEEEecCCEEEEEECHHHhhccCCcEEEEeCCCeEEEEEcCCCceEEEEecCCCCcccee
Confidence 994 789999999999999999864568999999999976555668889999986543 45544 3322 223 3
Q ss_pred c--cccCCCC
Q 029311 150 K--AMPRIDS 157 (195)
Q Consensus 150 ~--~~~~~d~ 157 (195)
+ ++.|+||
T Consensus 241 e~iY~~rpds 250 (445)
T PRK08525 241 EYIYFARPDS 250 (445)
T ss_pred EeeeecCCCc
Confidence 3 4688887
No 16
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.95 E-value=4.7e-27 Score=214.91 Aligned_cols=149 Identities=14% Similarity=0.157 Sum_probs=119.7
Q ss_pred CCCCeee--cCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHH-hcCCc-hHHHHhhccccceEEEE
Q 029311 6 NWRRWFC--GLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLR-DRGPY-PAHQVLRDLDGSFGFVL 77 (195)
Q Consensus 6 ~~QP~~~--~~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~-~~G~~-~~~~~l~~L~G~FAfvl 77 (195)
..||+.. .+++++++|||+|+|+.+||++|.. |.+.+|+|+++++|.+.. +++.. .+.+++++|+|+|||++
T Consensus 101 naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~~li~~~~~~~~~~eai~~~~~~l~G~ya~vi 180 (474)
T PRK06388 101 NAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAELSRNISKYGLKEGFERSMERLRGAYACAL 180 (474)
T ss_pred CCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCceeEEE
Confidence 5899973 3578999999999999999999963 899999999999996432 33421 24689999999999999
Q ss_pred EECCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEE-eCCceEEEec-C----CCc-cc
Q 029311 78 YDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLMSFEH-P----TRE-MK 150 (195)
Q Consensus 78 ~D~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~-~~~g~~~y~~-p----~~~-~~ 150 (195)
++ +++++++|||+|+||||||..+ +.++||||.+||.....+.+++++||+++. +++|+..+.. + ..| +|
T Consensus 181 ~~--~~~l~a~RDp~GiRPL~~G~~~-~~~~~ASE~~Al~~~~~~~i~~l~PGeiv~i~~~g~~~~~~~~~~~~~~C~fE 257 (474)
T PRK06388 181 MI--NDRLYAIRDPNGIRPLVLGKNF-DGYIIASESCAIDALSGTTIKNVEPGEVVEVFDNGYKTIFKLDGDKVAHCMFE 257 (474)
T ss_pred EE--CCEEEEEECCCCCCceEEEecC-CEEEEEEChHHHHhccCcEEEEeCCCEEEEEECCceEEEEecCCCccccceEE
Confidence 97 4789999999999999999984 679999999999987666789999999854 5678644432 2 223 23
Q ss_pred --cccCCCC
Q 029311 151 --AMPRIDS 157 (195)
Q Consensus 151 --~~~~~d~ 157 (195)
++.|.||
T Consensus 258 ~iYfarpds 266 (474)
T PRK06388 258 YVYFSRPDS 266 (474)
T ss_pred EEeecCCcc
Confidence 4688887
No 17
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.95 E-value=6.3e-27 Score=214.46 Aligned_cols=149 Identities=19% Similarity=0.217 Sum_probs=119.9
Q ss_pred CCCCeee--cCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhcCC--chHHHHhhccccceEEEE
Q 029311 6 NWRRWFC--GLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGP--YPAHQVLRDLDGSFGFVL 77 (195)
Q Consensus 6 ~~QP~~~--~~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~~G~--~~~~~~l~~L~G~FAfvl 77 (195)
+.||++. .+++++++|||+|+|+.+||++|.. |++.+|+|+|++++.+... +. +.+.+++++|+|+|||++
T Consensus 95 naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~~Li~~~~~-~~~~eai~~~~~~l~G~ya~~i 173 (484)
T PRK07272 95 NIQPFLFHFHDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILMHLIRRSHN-PTFMGKLKEALNTVKGGFAYLL 173 (484)
T ss_pred CCCCEEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHccCceeEEE
Confidence 6899986 4688999999999999999999963 8999999999999975321 11 125689999999999999
Q ss_pred EECCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEE-eCCceEEE--ecCC---Cc-cc
Q 029311 78 YDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLMSF--EHPT---RE-MK 150 (195)
Q Consensus 78 ~D~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~-~~~g~~~y--~~p~---~~-~~ 150 (195)
++. ++++++|||+|+||||||..+++.++||||.+||.....+.+++++||++++ +++|++.+ ..+. .| ++
T Consensus 174 ~~~--~~l~a~RDp~GirPL~~G~~~~~~~~~ASE~~Al~~ig~~~ir~l~PGEiv~i~~~g~~~~~~~~~~~~~~C~FE 251 (484)
T PRK07272 174 LTE--DKLIAALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVRDVQPGEIVIIDDEGIQYDSYTTDTQLAICSME 251 (484)
T ss_pred EEC--CEEEEEECCCCCCcEEEEEecCCEEEEEECHHHHhccCCceEEEcCCCeEEEEECCceEEEEecCCccccccchh
Confidence 984 7899999999999999998755679999999999876656788999999865 45775543 3321 23 23
Q ss_pred --cccCCCC
Q 029311 151 --AMPRIDS 157 (195)
Q Consensus 151 --~~~~~d~ 157 (195)
++.|+|+
T Consensus 252 ~vYfarpds 260 (484)
T PRK07272 252 YIYFARPDS 260 (484)
T ss_pred hhhhcCCcc
Confidence 4688887
No 18
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.95 E-value=1.2e-26 Score=213.29 Aligned_cols=150 Identities=19% Similarity=0.205 Sum_probs=119.5
Q ss_pred CCCCeeec--CCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCc---hHHHHhhccccceEEE
Q 029311 6 NWRRWFCG--LHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPY---PAHQVLRDLDGSFGFV 76 (195)
Q Consensus 6 ~~QP~~~~--~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~~G~~---~~~~~l~~L~G~FAfv 76 (195)
+.||+... .++++++|||+|+|+.+||++|.. |++.+|+|+|+++|....+.|.+ .+.+++++|+|+|||+
T Consensus 117 naQP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~li~~~~~~~~~~~eai~~~~~~l~G~ya~v 196 (500)
T PRK07349 117 NAQPAVLETRLGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKDWLEAAISAFQRCQGAFSLV 196 (500)
T ss_pred CCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhEEEE
Confidence 68999864 478999999999999999999862 89999999999999754333321 2468999999999999
Q ss_pred EEECCCCEEEEEEeCCCCeeEEEEEeC---CCeEEEEeCchhhhhhccCceEEecCCeEEE-eCCceEEEec---C--CC
Q 029311 77 LYDCKAGTIFAALDADEGVRLFWGIAA---DGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLMSFEH---P--TR 147 (195)
Q Consensus 77 l~D~~~~~l~~aRD~~G~~PLyyg~~~---dg~~~faSe~~aL~~~~~~~i~~lppG~~~~-~~~g~~~y~~---p--~~ 147 (195)
+.+ .++++++|||+|+||||||... ++.++||||.+||.....+.+++++||+++. +++|+..+.. + ..
T Consensus 197 i~~--~~~l~aaRDp~GiRPL~~G~~~~~~~~~~~~ASE~~Al~~lg~~~ir~v~PGeiv~i~~~g~~~~~~~~~~~~~~ 274 (500)
T PRK07349 197 IGT--PEGLMGVRDPNGIRPLVIGTLGEGGPGRYVLASETCALDIIGAEYLRDVEPGELVWITEGGLSSFHWAQEPQRKL 274 (500)
T ss_pred EEe--CCEEEEEECCCCCCCeEEEecccCCCCeEEEEeccchhhhcCCceEEEeCCCeEEEEECCceEEEecccCCCcce
Confidence 987 4789999999999999999862 2579999999999876556789999999865 4677655432 1 22
Q ss_pred c-cc--cccCCCC
Q 029311 148 E-MK--AMPRIDS 157 (195)
Q Consensus 148 ~-~~--~~~~~d~ 157 (195)
| ++ ++.|+||
T Consensus 275 C~fE~vYfarpdS 287 (500)
T PRK07349 275 CIFEMIYFARPDS 287 (500)
T ss_pred eEEEeeeccCCCC
Confidence 3 33 5688887
No 19
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=99.94 E-value=4e-27 Score=191.15 Aligned_cols=115 Identities=17% Similarity=0.233 Sum_probs=97.1
Q ss_pred CCCCCeeecCCcEEEEEEEEEcchHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCC--chHHHHhhccccceEEEEEECCC
Q 029311 5 QNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGP--YPAHQVLRDLDGSFGFVLYDCKA 82 (195)
Q Consensus 5 ~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~~~s~sD~evi~~ly~~~~~~G~--~~~~~~l~~L~G~FAfvl~D~~~ 82 (195)
++.||+...+++++++|||+|||+.+|++ +.+|+|+|+++|++ +|. ..+.+++++|+|+||||+||..+
T Consensus 62 ~~~QP~~~~~~~~~lv~NGeIyN~~~l~~------s~sDtEvi~~l~~~---~g~~~~~i~~~~~~L~G~fA~vi~d~~~ 132 (181)
T cd03766 62 VTRQPLVDQSTGNVLQWNGELYNIDGVED------EENDTEVIFELLAN---CSSESQDILDVLSSIEGPFAFIYYDASE 132 (181)
T ss_pred CCCCCCEeCCCCEEEEECCEEECcccccC------CCCHHHHHHHHHHH---HhhhHHHHHHHHHhcccceEEEEEeCCC
Confidence 57999998888899999999999999975 68999999999984 442 12348999999999999999988
Q ss_pred CEEEEEEeCCCCeeEEEEEeC-CCeEEEEeCchhhhhhccCceEEecCCe
Q 029311 83 GTIFAALDADEGVRLFWGIAA-DGSVVISDNLELIKASCAKSFAPFPAGC 131 (195)
Q Consensus 83 ~~l~~aRD~~G~~PLyyg~~~-dg~~~faSe~~aL~~~~~~~i~~lppG~ 131 (195)
++++++|||+|+|||||+... ++.++|||+..... . ..+.++||+-
T Consensus 133 ~~l~~aRD~~G~rPL~y~~~~~~~~l~~aS~~~~~~--~-~~~~e~~~~g 179 (181)
T cd03766 133 NKLYFGRDCLGRRSLLYKLDPNGFELSISSVSGSSS--G-SGFQEVLAGG 179 (181)
T ss_pred CEEEEEECCCCCcCcEEEeeCCCCcEEEEEccCCCC--C-CceEECCCCc
Confidence 999999999999999999974 57899999975432 1 2577888843
No 20
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.94 E-value=2.7e-26 Score=211.34 Aligned_cols=149 Identities=20% Similarity=0.209 Sum_probs=119.4
Q ss_pred CCCCeeec---CCcEEEEEEEEEcchHHHHHHhcC---------CCCCCHHHHHHHHHHHHHhcCC--chHHHHhhcccc
Q 029311 6 NWRRWFCG---LHNVYCMFMGSLNNLSSLNKQYGL---------SKGSNEAMFVIEAYRTLRDRGP--YPAHQVLRDLDG 71 (195)
Q Consensus 6 ~~QP~~~~---~~~~~lv~NG~I~N~~eL~~~l~~---------~~s~sD~evi~~ly~~~~~~G~--~~~~~~l~~L~G 71 (195)
+.||++.. .++++++|||+|+|+++||++|.. |.+.+|+|+|++++..+...+. ..+.+++++|+|
T Consensus 107 naQP~~~~~~~~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~Li~~~~~~~~~~eai~~~~~~l~G 186 (510)
T PRK07847 107 NAQPTFRATAAGGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTALLAHGAADSTLEQAALELLPTVRG 186 (510)
T ss_pred CCCCcCcccCCCCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhhh
Confidence 58999763 688999999999999999999852 6899999999999975332221 124589999999
Q ss_pred ceEEEEEECCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEE-eCCceE--EEecCC--
Q 029311 72 SFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLM--SFEHPT-- 146 (195)
Q Consensus 72 ~FAfvl~D~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~-~~~g~~--~y~~p~-- 146 (195)
+|||+++|. ++++++||++|++|||||..+ +.++||||.++|.....+.++++|||+++. +++|++ +|+.+.
T Consensus 187 ~yA~vi~d~--~~L~aaRDp~GirPL~~g~~~-~~~~vASE~~AL~~~g~~~ir~v~PGeiv~I~~~gv~~~~~~~~~~~ 263 (510)
T PRK07847 187 AFCLVFMDE--HTLYAARDPQGVRPLVLGRLE-RGWVVASETAALDIVGASFVREIEPGELIAIDADGLRSTRFAEPTPK 263 (510)
T ss_pred heEEEEEEC--CEEEEEECCCCCCCcEEEEEC-CeEEEEechHHHhccCCcEEEEECcCEEEEEECCceEEEeccCCCCC
Confidence 999999994 689999999999999999984 679999999999876446789999999965 456744 355543
Q ss_pred Cc-cc--cccCCCC
Q 029311 147 RE-MK--AMPRIDS 157 (195)
Q Consensus 147 ~~-~~--~~~~~d~ 157 (195)
.| +| ++.|+||
T Consensus 264 ~C~fE~vYfarpdS 277 (510)
T PRK07847 264 GCVFEYVYLARPDT 277 (510)
T ss_pred CCeEEEEEecCCcc
Confidence 23 33 5688887
No 21
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.94 E-value=3.9e-26 Score=208.87 Aligned_cols=150 Identities=16% Similarity=0.203 Sum_probs=119.1
Q ss_pred CCCCCeee--cCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhcCC-chHHHHhhccccceEEEE
Q 029311 5 QNWRRWFC--GLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGP-YPAHQVLRDLDGSFGFVL 77 (195)
Q Consensus 5 ~~~QP~~~--~~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~~G~-~~~~~~l~~L~G~FAfvl 77 (195)
.+.||++. .+++++++|||+|+|+++||++|.. |++.+|+|+|+++|.+...... +.+.+++++|+|+|||++
T Consensus 93 ~naqP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~Li~~~~~~~~~eai~~~~~~l~G~ya~vi 172 (471)
T PRK06781 93 ANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIKRSTKDSLIESVKEALNKVKGAFAYLL 172 (471)
T ss_pred CCCCCeEEecCCCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCcEEEEE
Confidence 35799964 4678999999999999999999862 8899999999999974321111 125689999999999999
Q ss_pred EECCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEE-eCCceEEE--ecC-C--Cc-cc
Q 029311 78 YDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLMSF--EHP-T--RE-MK 150 (195)
Q Consensus 78 ~D~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~-~~~g~~~y--~~p-~--~~-~~ 150 (195)
++. ++++++||++|++|||||..+ +.++||||.++|.....+.+++++||+++. .++|++.+ ..+ . .| ++
T Consensus 173 ~~~--~~l~aaRD~~GirPL~~g~~~-~~~~~ASE~~Al~~~g~~~ir~v~pGeiv~i~~~g~~~~~~~~~~~~~~C~fE 249 (471)
T PRK06781 173 LTG--NEMIVALDPNGFRPLSIGKMG-DAYVVASETCAFDVVGATYIRDVEPGELLIINDEGIHVDRFTNEVDHAICSME 249 (471)
T ss_pred EEC--CEEEEEECCCCCCCeEEEEEC-CEEEEEECchHhhhcCCcEEEEeCCCEEEEEECCceEEEecCcCcccccceEE
Confidence 994 789999999999999999984 689999999999876556788999999865 45776543 222 1 23 33
Q ss_pred --cccCCCC
Q 029311 151 --AMPRIDS 157 (195)
Q Consensus 151 --~~~~~d~ 157 (195)
++.|+||
T Consensus 250 ~vYfarpds 258 (471)
T PRK06781 250 YIYFARPDS 258 (471)
T ss_pred EEEecCCCc
Confidence 4688887
No 22
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.94 E-value=9.6e-26 Score=204.87 Aligned_cols=132 Identities=16% Similarity=0.176 Sum_probs=109.6
Q ss_pred CCCCCeeec--CCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHH-hcCC--chHHHHhhccccceEE
Q 029311 5 QNWRRWFCG--LHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLR-DRGP--YPAHQVLRDLDGSFGF 75 (195)
Q Consensus 5 ~~~QP~~~~--~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~-~~G~--~~~~~~l~~L~G~FAf 75 (195)
-..||+... +++++++|||+|+|+++||++|.. |++.+|+|+|++++.... ++|. ..+.+++++|+|+|||
T Consensus 82 ~~~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~li~~~~~~~~~~~~ai~~~~~~l~G~yal 161 (442)
T PRK08341 82 SEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGISFLWHYSETGDEFEAMREVFNEVKGAYSV 161 (442)
T ss_pred cCcCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCceEE
Confidence 368999764 478999999999999999999962 899999999999874322 3343 1256789999999999
Q ss_pred EEEECCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEE-eCCceEE
Q 029311 76 VLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLMS 141 (195)
Q Consensus 76 vl~D~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~-~~~g~~~ 141 (195)
++++. ++++++||++|+||||||.. + .++||||.+||...+ +.+++++||+++. .++|++.
T Consensus 162 ~i~~~--~~l~a~RD~~GirPL~~G~~-~-~~~~ASE~~Al~~~~-~~v~~l~PGeiv~i~~~g~~~ 223 (442)
T PRK08341 162 AILFD--GKIIVARDPVGFRPLSYGEG-D-GHYFASEDSALRMFV-NEIRDVFPGEVFVVSEGEVES 223 (442)
T ss_pred EEEEC--CEEEEEEcCCCceEEEEEEC-C-EEEEEeCcHHHHhhC-CeEEEeCCCEEEEEECCceEE
Confidence 99984 78999999999999999984 4 589999999999877 4799999999965 4567654
No 23
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.94 E-value=5.8e-26 Score=208.16 Aligned_cols=150 Identities=17% Similarity=0.213 Sum_probs=118.5
Q ss_pred CCCCCeeec--CCcEEEEEEEEEcchHHHHHHhc----CCCCCCHHHHHHHHHHHHHhcCC-chHHHHhhccccceEEEE
Q 029311 5 QNWRRWFCG--LHNVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGP-YPAHQVLRDLDGSFGFVL 77 (195)
Q Consensus 5 ~~~QP~~~~--~~~~~lv~NG~I~N~~eL~~~l~----~~~s~sD~evi~~ly~~~~~~G~-~~~~~~l~~L~G~FAfvl 77 (195)
-+.||++.. +++++++|||+|+|+++||++|. .|++.||+|+|+++|.+..+... ..+.+++++|+|+|||++
T Consensus 104 ~n~QP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~~Li~~~~~~~~~eai~~~~~~L~G~ya~vi 183 (479)
T PRK09123 104 RNVQPLFAELEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHLIARSRKASFLDRFIDALRQVEGAYSLVA 183 (479)
T ss_pred CCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcceeEEE
Confidence 468999863 67899999999999999999986 28899999999999974321111 124589999999999999
Q ss_pred EECCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEE-eCCc-eEEEe--c-C--CCc-c
Q 029311 78 YDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQG-LMSFE--H-P--TRE-M 149 (195)
Q Consensus 78 ~D~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~-~~~g-~~~y~--~-p--~~~-~ 149 (195)
++. ++++++|||+|+||||||.. ++.++||||.++|.......+++++||++++ +.+| ++.+. . + ..| +
T Consensus 184 l~~--~~l~a~RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~~r~v~pGeiv~i~~~g~~~~~~~~~~~~~~~C~F 260 (479)
T PRK09123 184 LTN--TKLIGARDPLGIRPLVLGEL-DGSPILASETCALDIIGAEFVRDVEPGELVVIDEDGSIESIKPFPPQPARFCIF 260 (479)
T ss_pred EEC--CEEEEEECCCCCCceEEEEE-CCEEEEEECchHHhccCCceEEEECCCeEEEEeCCCcEEEEEecCCCCCCCChh
Confidence 985 68999999999999999998 4689999999999765445788999999855 4577 65543 2 1 223 3
Q ss_pred c--cccCCCC
Q 029311 150 K--AMPRIDS 157 (195)
Q Consensus 150 ~--~~~~~d~ 157 (195)
+ ++.|.||
T Consensus 261 E~VYfarPdS 270 (479)
T PRK09123 261 EYVYFARPDS 270 (479)
T ss_pred heEEecCCCc
Confidence 3 4677777
No 24
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=99.94 E-value=1.1e-25 Score=186.75 Aligned_cols=124 Identities=15% Similarity=0.221 Sum_probs=106.4
Q ss_pred CCCCeeecCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCc---hHHHHhhccccceEEEEE
Q 029311 6 NWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPY---PAHQVLRDLDGSFGFVLY 78 (195)
Q Consensus 6 ~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~~G~~---~~~~~l~~L~G~FAfvl~ 78 (195)
+.||+...+++++++|||+|||+++||++|.. +.+.+|+|+++++|.++.+.+.. .+.+++++|+|+|||+++
T Consensus 83 n~qPf~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~fa~~~~ 162 (215)
T cd00714 83 NAHPHRSCDGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGAYALAVI 162 (215)
T ss_pred CCCCCCcCCCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccceEEEEE
Confidence 68999887789999999999999999999852 78999999999999865433322 245899999999999999
Q ss_pred ECCC-CEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEE
Q 029311 79 DCKA-GTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH 134 (195)
Q Consensus 79 D~~~-~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~ 134 (195)
|+.+ ++++++|| .+||||+.. ++.++||||.++|...|. .+..+.+|.++.
T Consensus 163 d~~~~~~l~~~RD---~~PL~~~~~-~~~~~~aSE~~al~~~~~-~~~~~~~~~~~~ 214 (215)
T cd00714 163 SKDEPDEIVAARN---GSPLVIGIG-DGENFVASDAPALLEHTR-RVIYLEDGDIAV 214 (215)
T ss_pred EeCCCCEEEEEEC---CCCcEEEEc-CCeEEEEECHHHHHHhcC-EEEEECCCCEEe
Confidence 9876 49999999 499999997 468999999999999884 588999998854
No 25
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.93 E-value=1.6e-25 Score=204.87 Aligned_cols=149 Identities=15% Similarity=0.180 Sum_probs=119.7
Q ss_pred CCCCeeec--CCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhcCC-chHHHHhhccccceEEEEE
Q 029311 6 NWRRWFCG--LHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGP-YPAHQVLRDLDGSFGFVLY 78 (195)
Q Consensus 6 ~~QP~~~~--~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~~G~-~~~~~~l~~L~G~FAfvl~ 78 (195)
+.||+... +++++++|||+|+|+++||++|.. |++.+|+|+|++++.+..+.+. ..+.+++++|+|+|||+++
T Consensus 99 n~qPf~~~~~~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi~~li~~~~~~~~~~ai~~~~~~l~G~ya~vi~ 178 (469)
T PRK05793 99 NAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNLIARSAKKGLEKALVDAIQAIKGSYALVIL 178 (469)
T ss_pred CCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhhceEEEE
Confidence 58999864 678999999999999999999862 8899999999999975332221 1256899999999999999
Q ss_pred ECCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEE-eCCceEEEec-C----CCc-cc-
Q 029311 79 DCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLMSFEH-P----TRE-MK- 150 (195)
Q Consensus 79 D~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~-~~~g~~~y~~-p----~~~-~~- 150 (195)
+. ++++++||+.|+||||||..+ +.++||||.++|.....+.+++++||++++ .++|+..+.. + ..| +|
T Consensus 179 ~~--~~l~a~RD~~GirPL~~g~~~-~~~~vASE~~al~~~g~~~~r~v~pGeiv~i~~~g~~~~~~~~~~~~~~C~fe~ 255 (469)
T PRK05793 179 TE--DKLIGVRDPHGIRPLCLGKLG-DDYILSSESCALDTIGAEFIRDVEPGEIVIIDEDGIKSIKFAEKTKCQTCAFEY 255 (469)
T ss_pred EC--CEEEEEECCCCCCCcEEEEEC-CEEEEEEChHHHhhcCcceEEEeCCCeEEEEECCceEEEecCcCccccccEEEE
Confidence 84 789999999999999999984 689999999999876656788999999865 4577555432 1 123 33
Q ss_pred -cccCCCC
Q 029311 151 -AMPRIDS 157 (195)
Q Consensus 151 -~~~~~d~ 157 (195)
++.|.||
T Consensus 256 vYfarpds 263 (469)
T PRK05793 256 IYFARPDS 263 (469)
T ss_pred EEeccCCc
Confidence 4688887
No 26
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=99.93 E-value=4.2e-25 Score=187.17 Aligned_cols=136 Identities=14% Similarity=0.182 Sum_probs=110.9
Q ss_pred CCCCCeee--cCCcEEEEEEEEEcchHHHHHHhc----CCCCCCHHHHHHHHHHHHHhcCC--chHHHHhhccccceEEE
Q 029311 5 QNWRRWFC--GLHNVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGP--YPAHQVLRDLDGSFGFV 76 (195)
Q Consensus 5 ~~~QP~~~--~~~~~~lv~NG~I~N~~eL~~~l~----~~~s~sD~evi~~ly~~~~~~G~--~~~~~~l~~L~G~FAfv 76 (195)
.+.||+.. .+++++++|||+|+|+++|+++|. .+.+.+|+|+++++|.++.+.+. ..+.+++++|+|.|||+
T Consensus 82 ~n~qPf~~~~~~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l~~~~~~~~~~~~al~~~~~~l~G~~a~~ 161 (252)
T cd00715 82 ENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAKDDLFEAIIDALERVKGAYSLV 161 (252)
T ss_pred cCCCCcEEecCCCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHhhccCCHHHHHHHHHHhccCceEEE
Confidence 36899986 357899999999999999999985 26789999999999985332111 12458999999999999
Q ss_pred EEECCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEEe-CCceEEE
Q 029311 77 LYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHS-EQGLMSF 142 (195)
Q Consensus 77 l~D~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~~-~~g~~~y 142 (195)
++|. ++++++||+.|.+||||+..+++.++||||.++|.....+.++++|||++++. .+++..+
T Consensus 162 ~~d~--~~l~~~RD~~G~~PL~~~~~~~~~~~vASE~~al~~~~~~~~~~l~pg~~~~i~~~~~~~~ 226 (252)
T cd00715 162 IMTA--DGLIAVRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVIDDDGLESS 226 (252)
T ss_pred EEEC--CEEEEEECCCCCCCeEEEEeCCCeEEEEECHHHhcccCCcEEEEcCCCeEEEEECCceEEE
Confidence 9996 88999999999999999998537899999999998753356889999999664 5665544
No 27
>PLN02440 amidophosphoribosyltransferase
Probab=99.93 E-value=5.2e-25 Score=202.03 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=109.0
Q ss_pred CCCCeeec--CCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhcCC-chHHHHhhccccceEEEEE
Q 029311 6 NWRRWFCG--LHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGP-YPAHQVLRDLDGSFGFVLY 78 (195)
Q Consensus 6 ~~QP~~~~--~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~~G~-~~~~~~l~~L~G~FAfvl~ 78 (195)
+.||++.. +++++++|||+|+|+++||++|.. |++.+|+|+|+++|.+..+... ..+.+++++|+|+|||+++
T Consensus 84 n~QPf~~~~~~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~li~~~~~~~~~~a~~~~~~~l~G~fa~vi~ 163 (479)
T PLN02440 84 NVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHLIAISKARPFFSRIVDACEKLKGAYSMVFL 163 (479)
T ss_pred CCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHhccceeeeEE
Confidence 68999863 477999999999999999999862 7899999999999974321111 1135899999999999999
Q ss_pred ECCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEE-eCCc
Q 029311 79 DCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQG 138 (195)
Q Consensus 79 D~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~-~~~g 138 (195)
|. ++++++|||.|+|||||+...++.++||||.++|.....+.+++++||++++ +++|
T Consensus 164 ~~--~~l~a~RD~~G~RPL~~g~~~~~~~~vASE~~al~~~g~~~ir~v~PGeiv~i~~~g 222 (479)
T PLN02440 164 TE--DKLVAVRDPHGFRPLVMGRRSNGAVVFASETCALDLIGATYEREVNPGEVIVVDKDK 222 (479)
T ss_pred EC--CEEEEEECCCCCCceEEEEeCCCEEEEEECchHHhccCCcEEEEeCCCeEEEEECCC
Confidence 94 5799999999999999998655689999999999877556789999999855 5677
No 28
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.92 E-value=7.9e-25 Score=185.67 Aligned_cols=124 Identities=14% Similarity=0.041 Sum_probs=103.9
Q ss_pred CCCCeeecCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHh-cCCc--------------------
Q 029311 6 NWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRD-RGPY-------------------- 60 (195)
Q Consensus 6 ~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~-~G~~-------------------- 60 (195)
+.||+.. ++++++|||+|+|+++||++|.. +.+.||+|+++++++...+ .|..
T Consensus 96 n~qP~~~--~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi~~ll~~~~~~~g~~~~a~~~~i~~~~~~~~~~~~ 173 (249)
T cd01907 96 GAHPFSI--GDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLEYYKHIIRMPEEERELLLA 173 (249)
T ss_pred CCCCeec--CCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCCChHHHHHHHhcCCHhHHHHHHH
Confidence 7899976 48999999999999999999863 7899999999999975332 2320
Q ss_pred -hHHHHhhccccceEEEEEECCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhc---cCceEEecCCeEEE
Q 029311 61 -PAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASC---AKSFAPFPAGCMFH 134 (195)
Q Consensus 61 -~~~~~l~~L~G~FAfvl~D~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~---~~~i~~lppG~~~~ 134 (195)
.+..++++|+|+|||++++. ++++++|||+|.|||||+.+ ++.++||||.++|...+ .+.+.+++||++++
T Consensus 174 ~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~~~~~~~~~~~l~pGe~v~ 248 (249)
T cd01907 174 LRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAET-DDYVAIASEECAIREIPDRDNAKVWEPRPGEYVI 248 (249)
T ss_pred HHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEE-CCEEEEEEcHHHHhccCccchheEecCCCCceEe
Confidence 12368899999999999984 57999999999999999998 46899999999998764 35688899999875
No 29
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.92 E-value=4.3e-24 Score=194.34 Aligned_cols=149 Identities=15% Similarity=0.144 Sum_probs=116.7
Q ss_pred CCCCeee-cCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCc---hHHHHhhccccceEEEE
Q 029311 6 NWRRWFC-GLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPY---PAHQVLRDLDGSFGFVL 77 (195)
Q Consensus 6 ~~QP~~~-~~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~~G~~---~~~~~l~~L~G~FAfvl 77 (195)
..||+.. ..++++++|||+|+|+++||++|.. |++.+|+|+|+++|.+....+.. .+.+++++|+|+|||++
T Consensus 84 n~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~falvi 163 (442)
T TIGR01134 84 NAQPFVVNSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHLLARERLEEDDLFEAIARVLKRVRGAYALVI 163 (442)
T ss_pred CCCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhcccCCHHHHHHHHHHHhCccceEEE
Confidence 5899974 4456999999999999999999862 78999999999999753211111 24589999999999999
Q ss_pred EECCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEEe-CCceEEEec-C---CCc-cc-
Q 029311 78 YDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHS-EQGLMSFEH-P---TRE-MK- 150 (195)
Q Consensus 78 ~D~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~~-~~g~~~y~~-p---~~~-~~- 150 (195)
+| .++++++|||.|.+||||+..+ +.++||||.++|.....+.+++++||++++. ++|+..+.. + ..| +|
T Consensus 164 ~~--~~~L~a~RD~~G~rPL~~g~~~-~~~~~ASE~~al~~~g~~~~r~v~pGeiv~i~~~~~~~~~~~~~~~~~c~fe~ 240 (442)
T TIGR01134 164 MI--GDGLIAVRDPHGIRPLVLGKRG-DGYVVASESCALDILGAEFIRDVEPGEAVVIDDGGLESRLFANTPRAPCIFEY 240 (442)
T ss_pred EE--CCEEEEEECCCCCCCcEEEEeC-CEEEEEeCchHhcccCCcEEEEECCCeEEEEECCcEEEEeccCCCCcceEEEE
Confidence 97 4789999999999999999984 6899999999998654467899999998654 567554221 2 123 23
Q ss_pred -cccCCCC
Q 029311 151 -AMPRIDS 157 (195)
Q Consensus 151 -~~~~~d~ 157 (195)
++.|.||
T Consensus 241 vYfarpds 248 (442)
T TIGR01134 241 VYFARPDS 248 (442)
T ss_pred EEecCCcc
Confidence 4678887
No 30
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.92 E-value=2.9e-24 Score=201.62 Aligned_cols=133 Identities=15% Similarity=0.220 Sum_probs=113.4
Q ss_pred CCCCeeecCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCc---hHHHHhhccccceEEEEE
Q 029311 6 NWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPY---PAHQVLRDLDGSFGFVLY 78 (195)
Q Consensus 6 ~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~~G~~---~~~~~l~~L~G~FAfvl~ 78 (195)
+.||+.+.+++++++|||+|||+++||++|.. +.+.+|+|+++++|.++.+.|.. .+.+++++|+|+|||+++
T Consensus 84 n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l~~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~ 163 (604)
T PRK00331 84 NAHPHTDCSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDLLEAVRKALKRLEGAYALAVI 163 (604)
T ss_pred cCCccccCCCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHhccCeeEEEEE
Confidence 68999987889999999999999999999862 78999999999999865444532 246899999999999999
Q ss_pred ECCC-CEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEE-eCCceEEEe
Q 029311 79 DCKA-GTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLMSFE 143 (195)
Q Consensus 79 D~~~-~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~-~~~g~~~y~ 143 (195)
|..+ ++++++||+ +||||+..+ +.++||||.++|...+ ..+.+|+||+++. +++|++.+.
T Consensus 164 d~~~~~~l~~~Rd~---~PL~~g~~~-~~~~~aSE~~al~~~~-~~~~~l~pg~~~~i~~~~~~~~~ 225 (604)
T PRK00331 164 DKDEPDTIVAARNG---SPLVIGLGE-GENFLASDALALLPYT-RRVIYLEDGEIAVLTRDGVEIFD 225 (604)
T ss_pred ecCCCCEEEEEECC---CceEEEEcC-CeEEEEECHHHHHHhc-CEEEEECCCeEEEEECCeEEEEe
Confidence 9886 899999995 999999974 6899999999999887 4689999999855 567766553
No 31
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.92 E-value=1.9e-24 Score=199.26 Aligned_cols=133 Identities=14% Similarity=0.154 Sum_probs=108.2
Q ss_pred CCCCCee-ecCCcEEEEEEEEEcchHHHHHHhcC-----CCCCCHHHHHHHHHHHHHhc--C-----C---chHHHHhhc
Q 029311 5 QNWRRWF-CGLHNVYCMFMGSLNNLSSLNKQYGL-----SKGSNEAMFVIEAYRTLRDR--G-----P---YPAHQVLRD 68 (195)
Q Consensus 5 ~~~QP~~-~~~~~~~lv~NG~I~N~~eL~~~l~~-----~~s~sD~evi~~ly~~~~~~--G-----~---~~~~~~l~~ 68 (195)
-+.||++ ....+++++|||+|+|+++||++|.. |.+.+|+|+|+++|.+.... | . ..+.+++++
T Consensus 83 ~n~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~li~~~l~~~~g~~~~~~~l~eai~~~~~~ 162 (501)
T PRK09246 83 AEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNVFAHELQKFRGLPLTPEDIFAAVAAVHRR 162 (501)
T ss_pred ccCCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHh
Confidence 3689997 44556999999999999999999852 68999999999999753221 2 1 124589999
Q ss_pred cccceEEEEEECCCCEEEEEEeCCCCeeEEEEEeC---CCeEEEEeCchhhhhhccCceEEecCCeEEE-eCCc
Q 029311 69 LDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAA---DGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQG 138 (195)
Q Consensus 69 L~G~FAfvl~D~~~~~l~~aRD~~G~~PLyyg~~~---dg~~~faSe~~aL~~~~~~~i~~lppG~~~~-~~~g 138 (195)
|+|+|||+++.. .++++++|||+|+||||||..+ ++.++||||.+||.....+.+++++||++++ +++|
T Consensus 163 l~Gays~v~~~~-~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g 235 (501)
T PRK09246 163 VRGAYAVVAMII-GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVAPGEAIYITEDG 235 (501)
T ss_pred cccceeeEEEec-CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCceEEEEeCCCeEEEEECCC
Confidence 999999998853 4579999999999999999873 3479999999999986656788999999854 5667
No 32
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.92 E-value=1.8e-24 Score=176.97 Aligned_cols=129 Identities=23% Similarity=0.375 Sum_probs=109.4
Q ss_pred CCCCCeeecCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhcCC--chHHHHhhccccceEEEEE
Q 029311 5 QNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGP--YPAHQVLRDLDGSFGFVLY 78 (195)
Q Consensus 5 ~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~~G~--~~~~~~l~~L~G~FAfvl~ 78 (195)
...||+....++++++|||+|+|+++|+++|.. +.+.+|+|+++++|..+.+.+. ..+.+++++++|.|+|+++
T Consensus 86 ~n~hPf~~~~~~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 165 (220)
T cd00352 86 ANAQPFRSEDGRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLFEAVEDALKRLDGPFAFALW 165 (220)
T ss_pred CCCCCcCcCCCCEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHHHHHHHhccCCHHHHHHHHHHhCCccEEEEEE
Confidence 368999877678999999999999999998872 7789999999999985432221 1245899999999999999
Q ss_pred ECCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEE
Q 029311 79 DCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMF 133 (195)
Q Consensus 79 D~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~ 133 (195)
|..+++++++||+.|.+||||+.+.++.++||||..++...+.+.+.++|||+++
T Consensus 166 d~~~~~l~~~rd~~G~~pL~~~~~~~~~~~~aSe~~~~~~~~~~~~~~l~~g~~~ 220 (220)
T cd00352 166 DGKPDRLFAARDRFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL 220 (220)
T ss_pred ECCCCEEEEEECCCCCCCeEEEEeCCCeEEEEecHHHHhhcCcccEEECCCCCCC
Confidence 9887999999999999999999983368999999999987664568999999863
No 33
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.91 E-value=7.3e-24 Score=199.03 Aligned_cols=133 Identities=13% Similarity=0.223 Sum_probs=111.8
Q ss_pred CCCCeeecCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCc---hHHHHhhccccceEEEEE
Q 029311 6 NWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPY---PAHQVLRDLDGSFGFVLY 78 (195)
Q Consensus 6 ~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~~G~~---~~~~~l~~L~G~FAfvl~ 78 (195)
+.||+...+++++++|||+|||+++||++|.. +.+.+|+|+|+++|.++.+.|.. .+.+++++|+|+|||+++
T Consensus 83 n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~~a~~i~ 162 (607)
T TIGR01135 83 NAHPHTDEGGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHLIEEYLREGGDLLEAVQKALKQLRGAYALAVL 162 (607)
T ss_pred CCCCcCcCCCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCceEEEEE
Confidence 68999988888999999999999999999862 78999999999999865433322 255899999999999999
Q ss_pred ECCC-CEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEE-eCCceEEEe
Q 029311 79 DCKA-GTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLMSFE 143 (195)
Q Consensus 79 D~~~-~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~-~~~g~~~y~ 143 (195)
|+.+ ++++++||+ +||||+.. ++.++||||.++|...+ ..+.++|||+++. +++|+..+-
T Consensus 163 ~~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~-~~~~~l~pg~~~~~~~~~~~~~~ 224 (607)
T TIGR01135 163 HADHPETLVAARSG---SPLIVGLG-DGENFVASDVTALLPVT-RRVIYLEDGDIAILTRDGVRIYN 224 (607)
T ss_pred ecCCCCEEEEEECC---CceEEEEC-CCeEEEEEChHHHHhhC-CEEEEeCCCeEEEEECCeeEEEe
Confidence 9875 469999995 99999997 56899999999999887 4688999999865 456766553
No 34
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.91 E-value=1.5e-23 Score=198.19 Aligned_cols=133 Identities=12% Similarity=0.192 Sum_probs=112.8
Q ss_pred CCCCeeecCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCc---hHHHHhhccccceEEEEE
Q 029311 6 NWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPY---PAHQVLRDLDGSFGFVLY 78 (195)
Q Consensus 6 ~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~~G~~---~~~~~l~~L~G~FAfvl~ 78 (195)
+.||+.+.+++++++|||+|+|+++||++|.. |.+.+|+|+|++++....++|.. .+.+++++|+|+|||+++
T Consensus 114 n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~~li~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~ 193 (640)
T PTZ00295 114 NAHPHCDYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGLELDQGEDFQEAVKSAISRLQGTWGLCII 193 (640)
T ss_pred CCCCCCCCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhceEEEE
Confidence 58999887789999999999999999999862 88999999999999754445532 256899999999999999
Q ss_pred ECC-CCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEE-eCCceEEEe
Q 029311 79 DCK-AGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLMSFE 143 (195)
Q Consensus 79 D~~-~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~-~~~g~~~y~ 143 (195)
|+. .++++++||+ +|||||..+ +.++||||.++|...+. .+.+++||+++. .++|++.|.
T Consensus 194 ~~~~~~~l~~~Rd~---~PL~~g~~~-~~~~~aSE~~al~~~~~-~~~~l~pGei~~i~~~~~~~~~ 255 (640)
T PTZ00295 194 HKDNPDSLIVARNG---SPLLVGIGD-DSIYVASEPSAFAKYTN-EYISLKDGEIAELSLENVNDLY 255 (640)
T ss_pred EeCCCCEEEEEECC---CceEEEEcC-ceEEEEechHHHHhhCc-EEEEeCCCeEEEEECCeEEEEe
Confidence 976 4799999996 999999974 68999999999998875 466799999965 457777765
No 35
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.90 E-value=3.1e-23 Score=160.38 Aligned_cols=100 Identities=20% Similarity=0.337 Sum_probs=90.7
Q ss_pred CCCCCeeecCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCchHHHHhhccccceEEEEEEC
Q 029311 5 QNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDC 80 (195)
Q Consensus 5 ~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FAfvl~D~ 80 (195)
...||+...+++++++|||+|+|+.+||++|.. +.+.+|+|+|+++++ ++|. +++++|+|+|+|++++.
T Consensus 30 ~~~hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~li~---~~g~----~~l~~l~G~~a~~~~~~ 102 (133)
T PF13522_consen 30 ENNHPFSNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAALIH---RWGE----EALERLDGAFAFAVYDK 102 (133)
T ss_pred cCCCCCcCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHHHH---HHHH----HHHHHhcCceEEEEEEc
Confidence 456999777889999999999999999999874 788999999999996 4563 88999999999999998
Q ss_pred CCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeC
Q 029311 81 KAGTIFAALDADEGVRLFWGIAADGSVVISDN 112 (195)
Q Consensus 81 ~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe 112 (195)
..++++++||+.|.+||||+.. ++.++||||
T Consensus 103 ~~~~l~~~rd~~g~~PL~~~~~-~~~~~~ASE 133 (133)
T PF13522_consen 103 TPNKLFLARDPLGIRPLYYGRD-GDGYVFASE 133 (133)
T ss_pred CCCEEEEEEcCCCCCCEEEEEc-CCEEEEEeC
Confidence 7799999999999999999998 579999998
No 36
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.88 E-value=5.1e-22 Score=178.20 Aligned_cols=150 Identities=18% Similarity=0.204 Sum_probs=119.5
Q ss_pred CCCCeeecC--CcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHh-cCC-chHHHHhhccccceEEEE
Q 029311 6 NWRRWFCGL--HNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRD-RGP-YPAHQVLRDLDGSFGFVL 77 (195)
Q Consensus 6 ~~QP~~~~~--~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~-~G~-~~~~~~l~~L~G~FAfvl 77 (195)
..||++... +.++++|||+|-|..+||++|.. |++.+|+|++++++.+-.. .+. +.+.+++++++|.||+++
T Consensus 90 naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l~a~~~~~~~~~~a~~~~~~~v~G~ys~v~ 169 (470)
T COG0034 90 NAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHLLARELDEDDIFEAVKEVLRRVKGAYALVA 169 (470)
T ss_pred cccceEEecCCCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHHHHHHHhhcccccHHHHHHHHHhhcCCcEEEEE
Confidence 469998654 45999999999999999999984 8899999999999974322 121 124688899999999999
Q ss_pred EECCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEE--e-CCceEE--EecC---CCc-
Q 029311 78 YDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFH--S-EQGLMS--FEHP---TRE- 148 (195)
Q Consensus 78 ~D~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~--~-~~g~~~--y~~p---~~~- 148 (195)
... +.|+++|||.|+|||.+|..+||.++||||.+||.....+.+++++||+.+. . ++|+.+ +..+ ..|
T Consensus 170 ~~~--~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa~~vRdv~pGE~v~i~~~~~g~~s~~~~~~~~~~~C~ 247 (470)
T COG0034 170 LIK--DGLIAVRDPNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVIITIDGDGLESKQVAEPPRRAPCS 247 (470)
T ss_pred EEC--CeEEEEECCCCCccceeeecCCCCEEEEechhhhhcccceEEEecCCceEEEEEecCceeEEEeccCCCCCccce
Confidence 985 5999999999999999999866779999999999988877889999999855 2 344443 3333 233
Q ss_pred cc--cccCCCC
Q 029311 149 MK--AMPRIDS 157 (195)
Q Consensus 149 ~~--~~~~~d~ 157 (195)
+| +++|+||
T Consensus 248 fEyVYFARPDS 258 (470)
T COG0034 248 FEYVYFARPDS 258 (470)
T ss_pred EEEEEeecCcc
Confidence 33 5789998
No 37
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.87 E-value=1e-21 Score=186.63 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=110.5
Q ss_pred CCCCeeecCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHH-hcCC-c---hHHHHhhccccceEEE
Q 029311 6 NWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLR-DRGP-Y---PAHQVLRDLDGSFGFV 76 (195)
Q Consensus 6 ~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~-~~G~-~---~~~~~l~~L~G~FAfv 76 (195)
+.||+.+.++++++||||+|||+.+||++|.. |++.+|+|+|+++++.+. ++|. . .+.+++++|+|+|||+
T Consensus 116 n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEvi~~li~~~~~~~g~~~~~~a~~~~~~~l~G~ya~~ 195 (670)
T PTZ00394 116 NCHPQQSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVISVLSEYLYTRKGIHNFADLALEVSRMVEGSYALL 195 (670)
T ss_pred CCCCcCCCCCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHccCceEEE
Confidence 56999988899999999999999999999962 899999999998875433 3453 1 2568999999999999
Q ss_pred EEECC-CCEEEEEEeCCCCeeEEEEEeCC--------------------CeEEEEeCchhhhhhccCceEEecCCeEEEe
Q 029311 77 LYDCK-AGTIFAALDADEGVRLFWGIAAD--------------------GSVVISDNLELIKASCAKSFAPFPAGCMFHS 135 (195)
Q Consensus 77 l~D~~-~~~l~~aRD~~G~~PLyyg~~~d--------------------g~~~faSe~~aL~~~~~~~i~~lppG~~~~~ 135 (195)
+.+.. .++++++||+ +||++|..++ +.++||||..+|...+ +.+..|++|++...
T Consensus 196 i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSd~~a~~~~t-~~~~~l~dg~~~~~ 271 (670)
T PTZ00394 196 VKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVMKLQTYDLTDLSGPLEVFFSSDVNSFAEYT-REVVFLEDGDIAHY 271 (670)
T ss_pred EEecCCCCEEEEEEcC---CceEEEeccccccccccccccccccccCCCCcEEEEeChHHHHHhh-ceEEEecCCeEEEE
Confidence 99654 4899999997 9999999742 4799999999999988 56889999999665
Q ss_pred CCc-eEEE
Q 029311 136 EQG-LMSF 142 (195)
Q Consensus 136 ~~g-~~~y 142 (195)
.+| ++.|
T Consensus 272 ~~~~~~~~ 279 (670)
T PTZ00394 272 CDGALRFY 279 (670)
T ss_pred ECCEEEEE
Confidence 544 4444
No 38
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.85 E-value=7.7e-21 Score=180.95 Aligned_cols=134 Identities=11% Similarity=0.185 Sum_probs=109.0
Q ss_pred CCCCeeec-CCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHH-hcCC-----c---hHHHHhhcccc
Q 029311 6 NWRRWFCG-LHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLR-DRGP-----Y---PAHQVLRDLDG 71 (195)
Q Consensus 6 ~~QP~~~~-~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~-~~G~-----~---~~~~~l~~L~G 71 (195)
+.||+... ++.+++||||+|+|+.+||++|.. |++.+|+|+|++++.+.. .+|. . .+.+++++|+|
T Consensus 105 n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~li~~~~~~~~~~~~~~~~~~a~~~~~~~l~G 184 (680)
T PLN02981 105 NSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFDKLNEEEGDVTFSQVVMEVMRQLEG 184 (680)
T ss_pred CCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHhccC
Confidence 57999864 377999999999999999999863 899999999999965422 3332 1 24579999999
Q ss_pred ceEEEEEECCC-CEEEEEEeCCCCeeEEEEEeC--C---------------------CeEEEEeCchhhhhhccCceEEe
Q 029311 72 SFGFVLYDCKA-GTIFAALDADEGVRLFWGIAA--D---------------------GSVVISDNLELIKASCAKSFAPF 127 (195)
Q Consensus 72 ~FAfvl~D~~~-~~l~~aRD~~G~~PLyyg~~~--d---------------------g~~~faSe~~aL~~~~~~~i~~l 127 (195)
+|||++++... ++++++||+ +||++|..+ + +.++||||.+||...+ +.+..+
T Consensus 185 ~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSe~~al~~~~-~~~~~l 260 (680)
T PLN02981 185 AYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFTSEGFLTKNRDKPKEFFLASDASAVVEHT-KRVLVI 260 (680)
T ss_pred ccceEEEecCCCCeEEEEecC---CceEEEecCcccccccccccccccccccccccCCcEEEEeCHHHHHHhc-CEEEEE
Confidence 99999999764 899999995 999999973 1 3699999999999885 679999
Q ss_pred cCCeEEEe-CCceEEEe
Q 029311 128 PAGCMFHS-EQGLMSFE 143 (195)
Q Consensus 128 ppG~~~~~-~~g~~~y~ 143 (195)
+||+++.. ++|+..|.
T Consensus 261 ~~gei~~i~~~~~~~~~ 277 (680)
T PLN02981 261 EDNEVVHLKDGGVGIYK 277 (680)
T ss_pred CCCeEEEEECCeEEEEe
Confidence 99999654 56666653
No 39
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.83 E-value=5.3e-20 Score=161.88 Aligned_cols=177 Identities=18% Similarity=0.263 Sum_probs=131.7
Q ss_pred CCCCeeec--CCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHH-----HhcCCc---hHHHHhhcccc
Q 029311 6 NWRRWFCG--LHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTL-----RDRGPY---PAHQVLRDLDG 71 (195)
Q Consensus 6 ~~QP~~~~--~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~-----~~~G~~---~~~~~l~~L~G 71 (195)
..||++.. -+.++++|||++-|+++||+++.. +.|.||+|+|++++..- +..+++ .+..+++.++|
T Consensus 87 n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~~~d~~~ri~~~~~~~~g 166 (474)
T KOG0572|consen 87 NVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVDAPDWFARIRDVMELLPG 166 (474)
T ss_pred cccceEeeccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHhhhcccCccHHHHHHHHHHhcCC
Confidence 47999764 466999999999999999999874 78999999999999531 112222 15689999999
Q ss_pred ceEEEEEECCCCEEEEEEeCCCCeeEEEEEeCCC----eEEEEeCchhhhhhccCceEEecCCeEEE-eCCceEEEe---
Q 029311 72 SFGFVLYDCKAGTIFAALDADEGVRLFWGIAADG----SVVISDNLELIKASCAKSFAPFPAGCMFH-SEQGLMSFE--- 143 (195)
Q Consensus 72 ~FAfvl~D~~~~~l~~aRD~~G~~PLyyg~~~dg----~~~faSe~~aL~~~~~~~i~~lppG~~~~-~~~g~~~y~--- 143 (195)
.||+|++.. +++|+.|||+|.|||++|..... .+++|||.++|.....+..+++.||+++. +++|.++-|
T Consensus 167 ~Yslv~m~~--d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~Rev~PGEiV~i~r~g~~s~~~~~ 244 (474)
T KOG0572|consen 167 AYSLVFMTA--DKLYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPGEIVEISRNGVKSVDIMK 244 (474)
T ss_pred ceeEEEEEc--cEEEEEecCCCCccceEeeecCCCCcceEEEEecceeeeecccEEEEeecCceEEEEecCCceeeeeec
Confidence 999999984 67999999999999999986533 79999999999987667788999999854 566643332
Q ss_pred cCC-----Cc-cc--cccCCCC---------ccceecccEEEEeccCCC---CCCCCCccc
Q 029311 144 HPT-----RE-MK--AMPRIDS---------EGVMCGANFKVDVQSRMR---SMPRVGSEA 184 (195)
Q Consensus 144 ~p~-----~~-~~--~~~~~d~---------~~~~~~~~~~v~~~~~l~---~~~~~~~~~ 184 (195)
.|. .+ ++ +++|.|| .+++||...-.+.--+.| .||--|-.|
T Consensus 245 ~~~~~~~~~cIFEyvYFArpdSi~eG~sVY~~R~~~G~~LA~e~P~d~DvVi~VPdS~~~a 305 (474)
T KOG0572|consen 245 RPDENRMAFCIFEYVYFARPDSIFEGQSVYTVRLQCGEQLATEAPVDADVVIPVPDSGTTA 305 (474)
T ss_pred CCccccccceeeeEEEeccCCceecccchHHHHHHHHhHhhhcCCcccceEEecCCchhHH
Confidence 332 12 22 4688887 466777665555444444 666444433
No 40
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.80 E-value=2.3e-19 Score=166.73 Aligned_cols=129 Identities=15% Similarity=0.254 Sum_probs=109.9
Q ss_pred CCCCCeeecCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCc-hHHHHhhccccceEEEEEE
Q 029311 5 QNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPY-PAHQVLRDLDGSFGFVLYD 79 (195)
Q Consensus 5 ~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~~G~~-~~~~~l~~L~G~FAfvl~D 79 (195)
-.++|+++ ++++|||||.|+||.+||++|.. |+|++|+|+|.|++++..+.+.. .+..++++|+|+||+++.|
T Consensus 84 ~NAHPh~~--~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi~hLi~~~~~~~~~~a~~~~l~~l~Gsyal~~~~ 161 (597)
T COG0449 84 ANAHPHSD--GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVIAHLLEEIYDTSLLEAVKKVLKRLEGSYALLCTH 161 (597)
T ss_pred CCCCCCCC--CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHhcceeEEEEEe
Confidence 46789966 88999999999999999999982 99999999999999765544421 2568999999999999999
Q ss_pred CCC-CEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeE-EEeCCceE
Q 029311 80 CKA-GTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCM-FHSEQGLM 140 (195)
Q Consensus 80 ~~~-~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~-~~~~~g~~ 140 (195)
.+. +++++||. | .||+.|.. +|..++||+..++.+.+ +.+..|.+|.+ ++.++++.
T Consensus 162 ~~~p~~i~~ar~--~-sPL~iG~g-~~e~f~aSD~~a~l~~t-~~~~~l~dgd~~~~~~~~v~ 219 (597)
T COG0449 162 SDFPDELVAARK--G-SPLVIGVG-EGENFLASDVSALLNFT-RRFVYLEEGDIAKLTTDGVS 219 (597)
T ss_pred cCCCCeEEEEcC--C-CCeEEEec-CCcceEecChhhhhhhh-ceEEEeCCCCEEEEECCcEE
Confidence 886 79999988 4 99999998 57899999999999988 46888999998 45566665
No 41
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.70 E-value=2.4e-16 Score=141.95 Aligned_cols=122 Identities=15% Similarity=0.194 Sum_probs=96.3
Q ss_pred CCCCCeeecCCcEEEEEEEEEcchHHHHHHhcC---------------------CCCCCHHHHHHHHHHHHHhcCCch--
Q 029311 5 QNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGL---------------------SKGSNEAMFVIEAYRTLRDRGPYP-- 61 (195)
Q Consensus 5 ~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~---------------------~~s~sD~evi~~ly~~~~~~G~~~-- 61 (195)
+.+||+. +++|||||+|+..+++.+.. ..+.||+|++.++++.+...|...
T Consensus 219 ~~AqPfr------~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~~ld~~le~l~~~g~~l~~ 292 (413)
T cd00713 219 PLAQPFR------YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSASLDNVLELLVRSGRSLPE 292 (413)
T ss_pred ccCCcce------eEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHHHHHHHHHHHHHcCCCHHH
Confidence 3678873 59999999999999886631 235899999999997655444421
Q ss_pred -HH-------------------------HHhhccccceEEEEEECCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchh
Q 029311 62 -AH-------------------------QVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLEL 115 (195)
Q Consensus 62 -~~-------------------------~~l~~L~G~FAfvl~D~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~a 115 (195)
+. .+++.++|.||+++.| .+.++++|||.|.|||+|+.++|+.+++|||..+
T Consensus 293 A~~mliPeaw~~~~~m~~~~r~fYey~~~~me~~dGp~aiv~~d--g~~i~a~rDrnGlRPl~~~~t~d~~~v~ASE~ga 370 (413)
T cd00713 293 AMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAIAFTD--GRQVGASLDRNGLRPARYVITKDGLLIMSSEVGV 370 (413)
T ss_pred HHHHhCChhhccCccCCHHHHHHHHHHHHHhccCCCcEEEEEEe--CCEEEEEeCCCCCcceEEEEECCCEEEEEeCCcc
Confidence 11 5668899999999998 4789999999999999999987678999999999
Q ss_pred hhhhccCceE---EecCCeEEEe
Q 029311 116 IKASCAKSFA---PFPAGCMFHS 135 (195)
Q Consensus 116 L~~~~~~~i~---~lppG~~~~~ 135 (195)
|.. ....|. ++.||+++..
T Consensus 371 l~~-~~~~V~~kg~l~PGe~v~i 392 (413)
T cd00713 371 VDV-PPEKVVEKGRLGPGEMLLV 392 (413)
T ss_pred cCC-CcceeeecCCCCCCeEEEE
Confidence 965 334565 7999998654
No 42
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.63 E-value=3.1e-15 Score=127.14 Aligned_cols=123 Identities=18% Similarity=0.254 Sum_probs=98.8
Q ss_pred CCCCeeecCCcEEEEEEEEEcchHHHHHHhcC-----CCCCCHHHHHHHHHHHHH-hcCC-------chHHHHhhccc--
Q 029311 6 NWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGL-----SKGSNEAMFVIEAYRTLR-DRGP-------YPAHQVLRDLD-- 70 (195)
Q Consensus 6 ~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~-----~~s~sD~evi~~ly~~~~-~~G~-------~~~~~~l~~L~-- 70 (195)
..||+.. ++++++|||.|.|+++|+..+.. +.+.+|+|++++++.... +.+. ..+.++++.|+
T Consensus 99 n~hPf~~--~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~li~~~l~~~~~~~~~~~~~al~~~~~~l~~~ 176 (257)
T cd01908 99 NCHPFTR--GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERDPLDPAELLDAILQTLRELAAL 176 (257)
T ss_pred cCCCccc--CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHh
Confidence 5799866 48999999999999999988762 688999999999986532 2221 13568888898
Q ss_pred ---cceEEEEEECCCCEEEEEEeCCCCeeEEEEEeC-----------------CCeEEEEeCchhhhhhccCceEEecCC
Q 029311 71 ---GSFGFVLYDCKAGTIFAALDADEGVRLFWGIAA-----------------DGSVVISDNLELIKASCAKSFAPFPAG 130 (195)
Q Consensus 71 ---G~FAfvl~D~~~~~l~~aRD~~G~~PLyyg~~~-----------------dg~~~faSe~~aL~~~~~~~i~~lppG 130 (195)
|.|+|++.|. ++++++||+. .+||||+... ++.++||||..+... .++++|||
T Consensus 177 ~~~~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~vvaSE~l~~~~----~w~~v~~g 249 (257)
T cd01908 177 APPGRLNLLLSDG--EYLIATRYAS-APSLYYLTRRAPFGCARLLFRSVTTPNDDGVVVASEPLTDDE----GWTEVPPG 249 (257)
T ss_pred CcCeEEEEEEECC--CEEEEEEeCC-CCceEEEeccccccccccccccccCCCCCEEEEEeCCCCCCC----CceEeCCC
Confidence 7899988884 7899999987 7899999864 368999999877643 58899999
Q ss_pred eEEEeCC
Q 029311 131 CMFHSEQ 137 (195)
Q Consensus 131 ~~~~~~~ 137 (195)
++++.++
T Consensus 250 e~~~i~~ 256 (257)
T cd01908 250 ELVVVSE 256 (257)
T ss_pred EEEEEeC
Confidence 9977554
No 43
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.59 E-value=1.8e-14 Score=122.54 Aligned_cols=123 Identities=15% Similarity=0.206 Sum_probs=94.0
Q ss_pred CCCCeeecCCcEEEEEEEEEcchH-----HHHHHhc-----CCCCCCHHHHHHHHHHHHHhc-CCc----hHHHHhhccc
Q 029311 6 NWRRWFCGLHNVYCMFMGSLNNLS-----SLNKQYG-----LSKGSNEAMFVIEAYRTLRDR-GPY----PAHQVLRDLD 70 (195)
Q Consensus 6 ~~QP~~~~~~~~~lv~NG~I~N~~-----eL~~~l~-----~~~s~sD~evi~~ly~~~~~~-G~~----~~~~~l~~L~ 70 (195)
..||+.. ++++++|||.|.|++ +|+++|. .+.+.+|+|++.+++....+. .+. .+.++++.|.
T Consensus 102 N~hPf~~--g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~li~~~~~~~~~~~~~~ai~~~~~~l~ 179 (251)
T TIGR03442 102 ACAPFSD--GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALLLNRLLENDPRALEEALAEVLLILF 179 (251)
T ss_pred cCCCCCc--CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 6799874 789999999999997 5666653 367899999999888653222 111 1457888888
Q ss_pred cc-------eEEEEEECCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEEeCCc-eE
Q 029311 71 GS-------FGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSEQG-LM 140 (195)
Q Consensus 71 G~-------FAfvl~D~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~~~~g-~~ 140 (195)
|. |+|++.| .+++++.||+. ||||+..+ +.++||||. |... ..++++|||++++.++| +.
T Consensus 180 ~~~~~~~~~~n~~~sd--g~~l~a~R~~~---~L~~~~~~-~~~vvASEp--l~~~--~~W~~v~pge~v~i~~~~v~ 247 (251)
T TIGR03442 180 SAAAAPRVRLNLLLTD--GSRLVATRWAD---TLYWLKDP-EGVIVASEP--YDDD--PGWQDVPDRHLLSVSEDDVT 247 (251)
T ss_pred HHhhCcccceEEEEEc--CCEEEEEEeCC---eEEEEEcC-CEEEEEeCC--cCCC--CCceEeCCCeEEEEECCcEE
Confidence 88 9999999 47999999985 99999974 589999998 3221 26899999999766544 44
No 44
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=99.49 E-value=1.7e-13 Score=122.15 Aligned_cols=101 Identities=19% Similarity=0.224 Sum_probs=75.7
Q ss_pred CCCCCeeecCCcEEEEEEEEEcchHHHHHHhcC----CCC----------------CCHHHHHHHHHHHHHhcCCc----
Q 029311 5 QNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKG----------------SNEAMFVIEAYRTLRDRGPY---- 60 (195)
Q Consensus 5 ~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~----~~s----------------~sD~evi~~ly~~~~~~G~~---- 60 (195)
+.+||+. +++|||||.|++.+++.+.. +.+ .||+|++.++++.+...|.+
T Consensus 213 ~~AqPf~------~laHNGeInt~~~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS~~l~~~le~l~~~g~~l~~a 286 (361)
T PF00310_consen 213 ENAQPFR------ALAHNGEINTIRGNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDSEVLDNLLELLLRRGRSLEEA 286 (361)
T ss_dssp GGSSSEE------EEEEEEEETTHHHHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HHHHHHHHHHHHHHTTSSHHHH
T ss_pred hhcChHH------HhhhccccccHHHHHHHHHhhcccccCccccchhhcccccCCCCChHHHHHHHHHHHHhcCCCHHHH
Confidence 4689986 89999999999999988752 444 89999999998766555610
Q ss_pred ------------------------hHHHHhhccccceEEEEEECCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCc
Q 029311 61 ------------------------PAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNL 113 (195)
Q Consensus 61 ------------------------~~~~~l~~L~G~FAfvl~D~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~ 113 (195)
....+++.++|.|++++.|. +.++++|||.|.||+.|+.++|+.+++|||.
T Consensus 287 ~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaai~~~~g--~~~~a~~Dr~GLRP~~~~~~~d~~~v~aSE~ 361 (361)
T PF00310_consen 287 MMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAAIIFTDG--NGVGAFLDRNGLRPLRYGITEDGLVVLASEA 361 (361)
T ss_dssp HHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEEEEEECS--SEEEEEE-TT--S--EEEEETTCEEEEESST
T ss_pred HHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceEEEEEeC--CEEEEEECCCCCcceEEEEECCCEEEEEeCC
Confidence 02367888999999999974 5699999999999999999977899999984
No 45
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=99.38 E-value=2.3e-12 Score=115.88 Aligned_cols=111 Identities=14% Similarity=0.263 Sum_probs=85.0
Q ss_pred CCCCeeecCCcEEEEEEEEEcchHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCCchHHHHhhccccceEEEEEECCCCEE
Q 029311 6 NWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTI 85 (195)
Q Consensus 6 ~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~~~s~sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FAfvl~D~~~~~l 85 (195)
-.||++.. ++.++.+||+|||-+. ..+..|+.+|++++..+.+.|. +.+.++.++|.|||++||.+.++|
T Consensus 61 t~Qpvv~d-~~~vfl~NGeIyn~~~-------s~~~~d~~~l~~~l~~~~e~~~--Il~~i~~~qGp~~~iyY~~~~~~L 130 (520)
T KOG0573|consen 61 TKQPVVED-DRYVFLFNGEIYNGEK-------SDTLFDTDILAEELSNLKESGD--ILDIIKSLQGPWAFIYYDVRSDKL 130 (520)
T ss_pred ccCceecc-cceEEEecceeccCCC-------ccccchHHHHHHHHhcCCcccc--HHHHHHhccCCceEEEEEccCcEE
Confidence 47998654 5599999999999652 4566799999998875443332 568889999999999999999999
Q ss_pred EEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCC
Q 029311 86 FAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAG 130 (195)
Q Consensus 86 ~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG 130 (195)
|+.||++|++.|.|..++.+..++.|.... .++.|.++||+
T Consensus 131 yfgRD~~GRrSLly~~~~~~f~~~~st~g~----~~~~i~e~~~~ 171 (520)
T KOG0573|consen 131 YFGRDDIGRRSLLYSLDPFNFSLVLSTVGT----SGKLIYEVPPV 171 (520)
T ss_pred EEecccccceeeeEEeccCceeEEeecccc----CCccccccCch
Confidence 999999999999999997665554343211 12346677877
No 46
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.20 E-value=1.3e-10 Score=116.94 Aligned_cols=122 Identities=12% Similarity=0.108 Sum_probs=89.1
Q ss_pred CCCCeeecCCcEEEEEEEEEcch----HHHHHH--h-cC-------------CCCCCHHHHHHHHHHHHHhcCCch----
Q 029311 6 NWRRWFCGLHNVYCMFMGSLNNL----SSLNKQ--Y-GL-------------SKGSNEAMFVIEAYRTLRDRGPYP---- 61 (195)
Q Consensus 6 ~~QP~~~~~~~~~lv~NG~I~N~----~eL~~~--l-~~-------------~~s~sD~evi~~ly~~~~~~G~~~---- 61 (195)
.+||+ -.++|||||.-+ ..++.+ . .. ....||++.+-.+++-+...|...
T Consensus 231 ~AqPF------R~laHNGEINTi~gN~nwm~are~~l~s~~~~~~~~~~Pii~~~~SDSa~lDn~lElL~~~G~sl~~A~ 304 (1485)
T PRK11750 231 LAQPF------RYLAHNGEINTITGNRQWARARAYKFQTPLIPDLQEAAPFVNETGSDSSSLDNMLELLLAGGMDLFRAM 304 (1485)
T ss_pred cCCCc------eeeeeccccccHHHHHHHHHHHHHhccCCCcchHHhhCCcCCCCCChHHHHHHHHHHHHHcCCCHHHHH
Confidence 45665 358999999833 333221 1 00 245789999888887655455410
Q ss_pred -----------------HH-------HHhhccccceEEEEEECCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhh
Q 029311 62 -----------------AH-------QVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIK 117 (195)
Q Consensus 62 -----------------~~-------~~l~~L~G~FAfvl~D~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~ 117 (195)
.. .+++-++|.||+++.| .+.+++.|||.|.|||.|+.++|+.+++|||..++.
T Consensus 305 ~mliPeaW~~~~~m~~~~r~fYeY~s~lmEpwdGpaaiv~~~--g~~i~A~~DrnGlRPlr~~~~~d~~~i~aSE~g~ld 382 (1485)
T PRK11750 305 RLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVMTD--GRYAACNLDRNGLRPARYVITKDKLITLASEVGIWD 382 (1485)
T ss_pred HHhCCcccccCCCCCHHHHHHHHHHHhhcccCCCCEEEEEEe--CCEEEEecCCCCCccceEEEEcCCEEEEEecceeee
Confidence 11 3556679999999999 479999999999999999998777899999999987
Q ss_pred hhccCceE--EecCCeEEEe
Q 029311 118 ASCAKSFA--PFPAGCMFHS 135 (195)
Q Consensus 118 ~~~~~~i~--~lppG~~~~~ 135 (195)
-...+.++ ++.||+++..
T Consensus 383 i~~~~vvrkg~l~PGemi~i 402 (1485)
T PRK11750 383 YQPDEVVEKGRVGPGELLVI 402 (1485)
T ss_pred cccceeEEecccCCCeEEEE
Confidence 55555566 7999998654
No 47
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=99.14 E-value=2e-10 Score=105.23 Aligned_cols=93 Identities=18% Similarity=0.353 Sum_probs=73.5
Q ss_pred CCCeee-cCCcEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhcCC--c----hHHHHhhccccceEE
Q 029311 7 WRRWFC-GLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGP--Y----PAHQVLRDLDGSFGF 75 (195)
Q Consensus 7 ~QP~~~-~~~~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~~G~--~----~~~~~l~~L~G~FAf 75 (195)
-+|+-+ +.++++++|||.|.||++||..|.. |.+++|+|+++.+++...+.-+ . ..+.++++|+|+||+
T Consensus 99 sHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL~~~~~D~~~~~~~F~~lv~~v~k~lEGaFal 178 (670)
T KOG1268|consen 99 CHPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKLYKHIYDTSPEDLDFHVLVELVLKELEGAFGL 178 (670)
T ss_pred CCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHHHHHHHHHHhhCCCcccHHHHHHHHHHHhhhHHHH
Confidence 456643 4567999999999999999999873 8899999999999976544322 1 146789999999999
Q ss_pred EEEECC-CCEEEEEEeCCCCeeEEEEEe
Q 029311 76 VLYDCK-AGTIFAALDADEGVRLFWGIA 102 (195)
Q Consensus 76 vl~D~~-~~~l~~aRD~~G~~PLyyg~~ 102 (195)
++-... .+++.+.|+ | .||..|..
T Consensus 179 vfkS~hfP~e~Va~Rr--g-SPlliGvK 203 (670)
T KOG1268|consen 179 LFKSSHFPGEVVAARK--G-SPLLIGVK 203 (670)
T ss_pred HHHhhcCCcceeeecc--C-Ccceeeec
Confidence 987654 378999988 5 88888753
No 48
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=98.40 E-value=2.7e-06 Score=73.26 Aligned_cols=126 Identities=20% Similarity=0.346 Sum_probs=65.3
Q ss_pred CCCCeeec--CCcEEEEEEEEEcchHHHHHH-hcCCCCCCHHHHHHHHHHH-HHhcCC---ch-------HHHHhhccc-
Q 029311 6 NWRRWFCG--LHNVYCMFMGSLNNLSSLNKQ-YGLSKGSNEAMFVIEAYRT-LRDRGP---YP-------AHQVLRDLD- 70 (195)
Q Consensus 6 ~~QP~~~~--~~~~~lv~NG~I~N~~eL~~~-l~~~~s~sD~evi~~ly~~-~~~~G~---~~-------~~~~l~~L~- 70 (195)
..||+... .++.+.+|||.|.+++.++.. +. ....+|+|.+..++.. +.+.+. .. +.++++.+.
T Consensus 90 N~HPF~~~~~g~~w~FaHNG~i~~f~~~~~~~~~-~~G~TDSE~~F~lll~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 168 (271)
T PF13230_consen 90 NCHPFSRELWGRRWLFAHNGTIPGFEDILDDRYQ-PVGTTDSEHAFCLLLDQLRDRGPDAPPALEELFEALRELAKEINE 168 (271)
T ss_dssp -SS-EE----ETTEEEEEEEEETTGGGGHHHHHT---S--HHHHHHHHHHHTTTTT-HH--HHHHHHHHHHHHHHHS-SS
T ss_pred cCCCceeccCCCcEEEEeCCccccccccCccccc-cCCCcHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhcc
Confidence 57898743 357999999999998876633 33 6788999998888743 322231 11 235555554
Q ss_pred -cceEEEEEECCCCEEEEEEeC----CCCeeEE-------------EE---EeCCCeEEEEeCchhhhhhccCceEEecC
Q 029311 71 -GSFGFVLYDCKAGTIFAALDA----DEGVRLF-------------WG---IAADGSVVISDNLELIKASCAKSFAPFPA 129 (195)
Q Consensus 71 -G~FAfvl~D~~~~~l~~aRD~----~G~~PLy-------------yg---~~~dg~~~faSe~~aL~~~~~~~i~~lpp 129 (195)
|.++|++-|. +.+++.|+. .-+++.+ .. ...+..++||||.-. . ...+.++|+
T Consensus 169 ~~~~N~~lsDG--~~l~a~~~~~l~~~~r~~p~~~~~l~~~~~~~~~~~~~~~~~~~~vVaSePLt--~--~e~W~~vp~ 242 (271)
T PF13230_consen 169 YGSLNFLLSDG--ERLFAHRYTSLYYLTRRPPFGKARLFDEDYEVDFSEVTDPDDRAVVVASEPLT--D--DEDWEPVPP 242 (271)
T ss_dssp SEEEEEEEE-S--S-EEEEEEESSS----------------------EEEEETTTTEEEEESS--------SS--EE--S
T ss_pred CeeEEEEEECC--ceEEEEEcCCeeEEeccccccccccccchhhhhhhhccCCCCCEEEEEeccCC--C--CCCeEEcCC
Confidence 7899999984 689999982 1112211 00 112347788888533 1 135899999
Q ss_pred CeEEEeCCc
Q 029311 130 GCMFHSEQG 138 (195)
Q Consensus 130 G~~~~~~~g 138 (195)
|++++.++|
T Consensus 243 g~~l~~~~G 251 (271)
T PF13230_consen 243 GSLLVFRDG 251 (271)
T ss_dssp SEEEE----
T ss_pred CcEEEEecc
Confidence 999988888
No 49
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=98.39 E-value=4.6e-06 Score=67.37 Aligned_cols=109 Identities=19% Similarity=0.237 Sum_probs=72.9
Q ss_pred cEEEEEEEEEcchHHHHHHhcC----CCCCCHHHHHHHHHHHHHhcCCchHHHHhhccccceEEEEEECCCCEEEEEEeC
Q 029311 16 NVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDA 91 (195)
Q Consensus 16 ~~~lv~NG~I~N~~eL~~~l~~----~~s~sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FAfvl~D~~~~~l~~aRD~ 91 (195)
+-..-.-|.|||+.-|+.-... ....+|+|+++.++.+ -|. .++..-+|.|+|.+=|+ ++++.+.+|+
T Consensus 48 ~~tayLIGsiyNr~~L~~lag~~eg~a~v~nd~ElL~~~~~~---lG~----~aLsLAEGdfcffiE~k-ng~L~l~Tds 119 (201)
T PF09147_consen 48 RGTAYLIGSIYNRRFLRGLAGMWEGHAYVLNDAELLYTIFTR---LGN----SALSLAEGDFCFFIEDK-NGELTLITDS 119 (201)
T ss_dssp TEEEEEES--S-HHHHHHHHTTT-GGGGG--HHHHHHHHHHH---H-G----GGGGG--SSEEEEEEET-TSEEEEEE-S
T ss_pred CccEEEEEEeccHHHHHHhhheeeccceeeccHHHHHHHHHH---hhh----hhhhhhcCceEEEEecC-CCcEEEEecC
Confidence 3444556999999988876664 2356999999998884 453 78999999999999885 6899999999
Q ss_pred CCCeeEEEEEeCCCeEEEEeCchhhhhh--------------c-----------cCceEEecCCeEEE
Q 029311 92 DEGVRLFWGIAADGSVVISDNLELIKAS--------------C-----------AKSFAPFPAGCMFH 134 (195)
Q Consensus 92 ~G~~PLyyg~~~dg~~~faSe~~aL~~~--------------~-----------~~~i~~lppG~~~~ 134 (195)
-|..|.|.-.+ +..++...+|-+-.. | -+++.++.||.+.+
T Consensus 120 ~G~~pv~lV~~--~~~WiTn~LK~V~~~eg~~a~df~~E~~v~q~~l~~d~~sPi~na~RlkPGsin~ 185 (201)
T PF09147_consen 120 RGFNPVYLVQS--KFIWITNSLKLVSAVEGEGAFDFMPESLVIQSSLRPDNFSPIKNAQRLKPGSINV 185 (201)
T ss_dssp SSSS-EEEEES--SSEEEES-HHHHHHHH-TTSS-B--HHHHSS-S---TT--SBTTEEEE-SSEEEE
T ss_pred CCCceEEEEec--CceEEecceEEEEEeeccccccccchhHHHhhhccCCCcCccccceecCCCceEE
Confidence 99999988775 367788776654321 1 15788999999843
No 50
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=98.30 E-value=1.9e-06 Score=77.04 Aligned_cols=123 Identities=11% Similarity=-0.016 Sum_probs=91.8
Q ss_pred CCCCCeeecCCcEEEEEEEEEcchHHHHHHhc----CCCCCCHHHHHHHHHHHHHhcCCch-----H----------HHH
Q 029311 5 QNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGPYP-----A----------HQV 65 (195)
Q Consensus 5 ~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~----~~~s~sD~evi~~ly~~~~~~G~~~-----~----------~~~ 65 (195)
|.+||+ -.++|||||.++.-.++.+. .+.+.+|+|++..++-.+.+.|.+. . ..-
T Consensus 220 ~~AHPf------r~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~e~~a~l~p~~~~~~sDs~~~dn~lE~l~~~G~~l~~ 293 (371)
T COG0067 220 PLAHPF------RLLVHNGEINTYGGNRNWLEARGYKFESPTDGEVLAKLLPILMRGGSDSASLDNALELLLLGGRDLYH 293 (371)
T ss_pred CccCcc------eeeeecceecccccHHHHHHHhhcccccCccHHHHHHHHHHhcccCCcchhhhHHHHHHHhcCcCchh
Confidence 577886 35699999998888777665 2788999999888885433333211 0 123
Q ss_pred hhccccceEEEEEECC-CCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEEeCCce
Q 029311 66 LRDLDGSFGFVLYDCK-AGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSEQGL 139 (195)
Q Consensus 66 l~~L~G~FAfvl~D~~-~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~~~~g~ 139 (195)
...|.|.||++.-..- .+...+.+|+.+.+|.+-|-+ +..+.++|+..|++..++ +.|+.|++.++|.
T Consensus 294 a~~m~~P~aw~~~~~~~~~~~afye~~~~l~epwdGpa-~~~f~dgse~gA~ldrng-----Lrp~Ry~~t~d~~ 362 (371)
T COG0067 294 AAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPA-DIVFTDGSEEGAILDRNG-----LRPARYWITKDGE 362 (371)
T ss_pred HHHhcCchhhccCCCCCcceEEEEehhhhCCCCccCCc-ceeEEeeeeeeeeeccCC-----CCcceEEEecCCE
Confidence 4467899999886533 356788999999999999998 468899999999876553 7899998888873
No 51
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=93.83 E-value=0.32 Score=41.64 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=26.0
Q ss_pred CCCeeecC--CcEEEEEEEEEcchHHH-HHHhcCCCCCCHHHHHH
Q 029311 7 WRRWFCGL--HNVYCMFMGSLNNLSSL-NKQYGLSKGSNEAMFVI 48 (195)
Q Consensus 7 ~QP~~~~~--~~~~lv~NG~I~N~~eL-~~~l~~~~s~sD~evi~ 48 (195)
.||++... ...+++|||.|.|++.+ ...+. +...+|.|...
T Consensus 90 tHPF~~~~~~~~~~FaHNG~l~~~~~~~~~~~~-~~~~tds~~~~ 133 (252)
T COG0121 90 THPFTRELWGYIWLFAHNGQLDKFKLLEGRKLE-PVGYTDSEAAF 133 (252)
T ss_pred CCCccccCCccceEEEecCcccCcccccccccC-CCCcchHHHHH
Confidence 57776532 35799999999999873 33332 33455655433
No 52
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=92.06 E-value=0.79 Score=47.18 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=47.8
Q ss_pred HHhhccccceEEEEEECCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCc--eEEecCCeEEE
Q 029311 64 QVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKS--FAPFPAGCMFH 134 (195)
Q Consensus 64 ~~l~~L~G~FAfvl~D~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~--i~~lppG~~~~ 134 (195)
-.++-.+|.=-+.+-| -+.+-+.-||.|.||-=|.++.|+.+++|||.-.+.-...+. --++.||.++.
T Consensus 405 ~~MEpWDGPALl~FsD--Gry~GA~LDRNGLRP~Ryy~Tsdd~v~~ASEVGvv~i~~~kVv~KgRL~PG~Mll 475 (2142)
T KOG0399|consen 405 CQMEPWDGPALLTFSD--GRYCGAILDRNGLRPARYYITSDDRVICASEVGVVPIPPEKVVQKGRLKPGMMLL 475 (2142)
T ss_pred hcCCCCCCceEEEecC--CceeeeeeccCCCcceeeEEecCCEEEEeecccccCCCHHHhhhccCcCCCeEEE
Confidence 4466778886555555 356778889999999977787788999999976543211111 13588998743
No 53
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=80.35 E-value=8.4 Score=25.91 Aligned_cols=47 Identities=23% Similarity=0.384 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHhcCCchHHHHhhccccceEEEEEECCCCEEEEEEeCCCC--eeEEE
Q 029311 42 NEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEG--VRLFW 99 (195)
Q Consensus 42 sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FAfvl~D~~~~~l~~aRD~~G~--~PLyy 99 (195)
.|.+-++..++.+++.|. +.-.-+ +.+|...+++++..|. |+ |||+.
T Consensus 12 ~~p~~l~~~lr~~RR~g~---------i~~~vs-i~~~~~~~ei~I~tD~-GR~~RPL~v 60 (63)
T PF04566_consen 12 SDPEELVKTLRNLRRSGK---------ISKEVS-IVYDIREKEIRINTDA-GRLCRPLFV 60 (63)
T ss_dssp SSHHHHHHHHHHHHHTTS---------S-TTSE-EEEETTTTEEEEE-SS-CEEEEEEEE
T ss_pred cCHHHHHHHHHHHhhccC---------CcceeE-EEEeccCCEEEEEccC-CcccceeEE
Confidence 355556666776666662 233334 4588888999999997 76 88875
No 54
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=74.71 E-value=6.2 Score=35.73 Aligned_cols=49 Identities=24% Similarity=0.261 Sum_probs=41.8
Q ss_pred HHhhccccceEEEEEECCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCch
Q 029311 64 QVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLE 114 (195)
Q Consensus 64 ~~l~~L~G~FAfvl~D~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~ 114 (195)
.+.+-.+|.=+.++.|. .++-+.+|+.|.+|-=|..++|+.++++||..
T Consensus 322 ~l~epwdGpa~~~f~dg--se~gA~ldrngLrp~Ry~~t~d~~vv~~se~g 370 (371)
T COG0067 322 ALMEPWDGPADIVFTDG--SEEGAILDRNGLRPARYWITKDGEVVVASEAG 370 (371)
T ss_pred hCCCCccCCcceeEEee--eeeeeeeccCCCCcceEEEecCCEEEEEEecc
Confidence 56667789999999994 57889999999999988888789999999864
No 55
>KOG0876 consensus Manganese superoxide dismutase [Inorganic ion transport and metabolism]
Probab=55.51 E-value=46 Score=28.31 Aligned_cols=82 Identities=17% Similarity=0.304 Sum_probs=55.2
Q ss_pred EEEEEE--EEEcchHHHHHHhcCCC-CCCHHHHHHHHHHHHHhcCCchHHHHhhc-------ccc-ceEEEEEECCCCEE
Q 029311 17 VYCMFM--GSLNNLSSLNKQYGLSK-GSNEAMFVIEAYRTLRDRGPYPAHQVLRD-------LDG-SFGFVLYDCKAGTI 85 (195)
Q Consensus 17 ~~lv~N--G~I~N~~eL~~~l~~~~-s~sD~evi~~ly~~~~~~G~~~~~~~l~~-------L~G-~FAfvl~D~~~~~l 85 (195)
-+..|| |.|+|+.-..+-+.... +....+.++.++++ +.|.. +++.++ ..| -|.+.+++++.++|
T Consensus 91 ~a~~Fn~~~~~~Nh~fFw~~l~p~gg~~p~~~~L~~aI~~--~FGS~--ee~~k~~~~~~~~v~GsGW~WLv~~~~~~kL 166 (234)
T KOG0876|consen 91 PAPKFNGAGHIYNHSFFWENLAPPGGGKPEGEALLKAIDS--SFGSL--EEFVKELNAAAAAVFGSGWLWLVYNKELKKL 166 (234)
T ss_pred hhhhcCCccccccchhhhhhccCCCCCCCchHHHHHHHHH--hhcCH--HHHHHHHHHHHHhhcCCceEEEEEcCCCCeE
Confidence 345555 58899988877776422 34555567777764 45652 222222 233 69999999877899
Q ss_pred EEEEeCCCCeeEEEEEe
Q 029311 86 FAALDADEGVRLFWGIA 102 (195)
Q Consensus 86 ~~aRD~~G~~PLyyg~~ 102 (195)
++.+-..-..||+++..
T Consensus 167 ~i~~T~Na~~P~~~~t~ 183 (234)
T KOG0876|consen 167 FILTTYNAGDPLVWTTG 183 (234)
T ss_pred EEEecCCCCCCeeccCC
Confidence 99988887789888754
No 56
>PF07981 Plasmod_MYXSPDY: Plasmodium repeat_MYXSPDY; InterPro: IPR012598 This repeat is found in two hypothetical Plasmodium proteins.
Probab=45.92 E-value=9.2 Score=19.03 Aligned_cols=6 Identities=67% Similarity=1.292 Sum_probs=4.1
Q ss_pred CCCCCC
Q 029311 1 MYFSQN 6 (195)
Q Consensus 1 ~~~~~~ 6 (195)
|||||.
T Consensus 1 mY~SPd 6 (17)
T PF07981_consen 1 MYFSPD 6 (17)
T ss_pred CccCCC
Confidence 677764
No 57
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=44.96 E-value=15 Score=29.37 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=16.7
Q ss_pred CcEEEEEEEEEcchHHHHH
Q 029311 15 HNVYCMFMGSLNNLSSLNK 33 (195)
Q Consensus 15 ~~~~lv~NG~I~N~~eL~~ 33 (195)
+++.+|+||+|-|.+.+.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (168)
T TIGR03823 33 DRISLVFRGQIINKESISR 51 (168)
T ss_pred hheeeeecceeecHHHHHH
Confidence 5799999999999988764
No 58
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=44.70 E-value=16 Score=29.33 Aligned_cols=19 Identities=16% Similarity=0.378 Sum_probs=16.7
Q ss_pred CcEEEEEEEEEcchHHHHH
Q 029311 15 HNVYCMFMGSLNNLSSLNK 33 (195)
Q Consensus 15 ~~~~lv~NG~I~N~~eL~~ 33 (195)
+++.+|+||+|-|.+.+.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (169)
T PRK11582 33 DRITLVFRGQIINKIAISR 51 (169)
T ss_pred hheeeeecceeecHHHHHH
Confidence 5799999999999988764
No 59
>COG4256 HemP Hemin uptake protein [Inorganic ion transport and metabolism]
Probab=39.68 E-value=15 Score=24.69 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=17.0
Q ss_pred CCeeecCCcEEEEEEEEEcchH
Q 029311 8 RRWFCGLHNVYCMFMGSLNNLS 29 (195)
Q Consensus 8 QP~~~~~~~~~lv~NG~I~N~~ 29 (195)
|-+|..++.+.+-|||.+|-.+
T Consensus 31 ~~Lfgg~~~i~I~H~Ga~Y~lr 52 (63)
T COG4256 31 QTLFGGDGKIIIDHDGAEYLLR 52 (63)
T ss_pred hhcccCCCeEEEecCCceEEEe
Confidence 3446678899999999999643
No 60
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=36.84 E-value=38 Score=30.22 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=35.9
Q ss_pred CCCCCCeeecCCcEEEEEEEEEcchHHHHHHhcC---------CCCCCHHHHHHHHHH
Q 029311 4 SQNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGL---------SKGSNEAMFVIEAYR 52 (195)
Q Consensus 4 ~~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~---------~~s~sD~evi~~ly~ 52 (195)
.|..||++...+=+-++-||..|-++..+..+.. .+..+|.|+|+.||.
T Consensus 146 ~~~v~~L~Gd~gWV~~v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYA 203 (351)
T KOG1227|consen 146 PPNVQPLYGDLGWVKHVQNGITQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYA 203 (351)
T ss_pred CCccccccccccceeehhcCeEEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhc
Confidence 4678899887776778889999977776655541 345567788888886
No 61
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=29.76 E-value=15 Score=28.53 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=18.5
Q ss_pred ccceEEEEEECCCCEEEEEEeCCCCeeEEE
Q 029311 70 DGSFGFVLYDCKAGTIFAALDADEGVRLFW 99 (195)
Q Consensus 70 ~G~FAfvl~D~~~~~l~~aRD~~G~~PLyy 99 (195)
+|.+++|+++. ++++-. |..|++|||=
T Consensus 10 e~~~S~Vv~~~--~~i~t~-~~rGv~pL~~ 36 (134)
T PF08973_consen 10 EENYSCVVLKD--GEIRTS-DGRGVKPLYD 36 (134)
T ss_dssp HTT-SEEEESS--SEEEEE---STTHHHHH
T ss_pred hCCceEEEEeC--CEEEEe-CCCChHHHHH
Confidence 58899999974 566665 4559999983
No 62
>PRK07225 DNA-directed RNA polymerase subunit B'; Validated
Probab=27.97 E-value=1.9e+02 Score=27.95 Aligned_cols=62 Identities=18% Similarity=0.138 Sum_probs=39.6
Q ss_pred EEEEEEEEcchHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCCchHHHHhhccccceEEEEEECCCCEEEEEEeCCCC--e
Q 029311 18 YCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDADEG--V 95 (195)
Q Consensus 18 ~lv~NG~I~N~~eL~~~l~~~~s~sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FAfvl~D~~~~~l~~aRD~~G~--~ 95 (195)
.|..||.+.-+- .|.+-++..++.+++.|. |. .+.=+++|.+.+++++..|+ |+ |
T Consensus 6 ~VflNG~~vG~~------------~~~~~lv~~lR~lRr~g~---------i~-~~vsI~~~~~~~ei~I~tD~-GR~~R 62 (605)
T PRK07225 6 KVYVNGKLIGTH------------DDPEELVEEIREARRSGE---------IS-EEVNVSYKEETNEVIINTDA-GRARR 62 (605)
T ss_pred EEEECCEEEEEE------------CCHHHHHHHHHHHHccCC---------CC-CcEEEEEECCCCEEEEEccC-Cccce
Confidence 455688775432 234556666666655552 33 34445567777899999997 77 9
Q ss_pred eEEEEEe
Q 029311 96 RLFWGIA 102 (195)
Q Consensus 96 PLyyg~~ 102 (195)
||+.-..
T Consensus 63 Pl~iv~~ 69 (605)
T PRK07225 63 PLIVVEN 69 (605)
T ss_pred eEEEEeC
Confidence 9987643
No 63
>PF04641 Rtf2: Rtf2 RING-finger
Probab=23.74 E-value=48 Score=28.23 Aligned_cols=30 Identities=10% Similarity=-0.061 Sum_probs=22.2
Q ss_pred CCCCCCeeecCCcEEEEEEEEEcchHHHHHHhc
Q 029311 4 SQNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYG 36 (195)
Q Consensus 4 ~~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~ 36 (195)
+++.||+.. -+++...|.|||.+.|-..|.
T Consensus 38 aLS~~pL~~---PiV~d~~G~LynKeaile~Ll 67 (260)
T PF04641_consen 38 ALSQQPLED---PIVSDRLGRLYNKEAILEFLL 67 (260)
T ss_pred cCcCCccCC---CeeeCCCCeeEcHHHHHHHHH
Confidence 566777743 366677899999998776665
No 64
>PF12532 DUF3732: Protein of unknown function (DUF3732); InterPro: IPR022205 This domain family is found in bacteria and eukaryotes, and is typically between 180 and 198 amino acids in length. There is a conserved DQP sequence motif.
Probab=20.88 E-value=27 Score=28.61 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=9.9
Q ss_pred CCCCCCCCcccccc
Q 029311 174 MRSMPRVGSEANWA 187 (195)
Q Consensus 174 l~~~~~~~~~~~~~ 187 (195)
-.-+.++||++||-
T Consensus 65 ~~~L~~~GSgaNwl 78 (193)
T PF12532_consen 65 PIPLREMGSGANWL 78 (193)
T ss_pred eEeHHhcCChHHHH
Confidence 33667788888883
Done!