Query 029311
Match_columns 195
No_of_seqs 185 out of 1553
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 17:45:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029311.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029311hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ct9_A Asparagine synthetase B 100.0 6.8E-36 2.3E-40 276.6 15.4 164 5-176 57-239 (553)
2 1jgt_A Beta-lactam synthetase; 100.0 1.6E-33 5.3E-38 258.8 11.5 160 7-176 57-254 (513)
3 1q15_A CARA; CMPR, (2S,5S)-5-c 100.0 1.9E-30 6.6E-35 237.7 7.8 161 5-176 41-251 (503)
4 1ao0_A Glutamine phosphoribosy 99.9 1.5E-27 5.2E-32 216.1 14.6 134 6-145 83-230 (459)
5 1xff_A D-fructose-6-, glucosam 99.9 6.5E-27 2.2E-31 195.4 15.7 133 5-144 83-224 (240)
6 1ecf_A Glutamine phosphoribosy 99.9 2.3E-24 7.8E-29 197.5 17.2 133 5-138 83-236 (504)
7 2bpl_A Glucosamine--fructose-6 99.9 3.1E-24 1.1E-28 200.2 15.7 131 6-143 84-223 (608)
8 3mdn_A Glutamine aminotransfer 99.9 2E-22 6.9E-27 171.9 12.5 130 6-142 100-255 (274)
9 1te5_A Conserved hypothetical 99.7 1.9E-17 6.4E-22 139.8 5.7 126 6-138 90-249 (257)
10 1ea0_A Glutamate synthase [NAD 99.6 1.4E-15 4.7E-20 151.9 12.1 123 5-135 220-393 (1479)
11 1ofd_A Ferredoxin-dependent gl 99.6 6.5E-15 2.2E-19 147.4 12.6 123 5-135 216-392 (1520)
12 1vk9_A Conserved hypothetical 29.7 8.5 0.00029 29.4 -0.7 27 70-99 27-53 (151)
13 1a34_A Protein (satellite toba 24.9 20 0.00069 26.1 0.6 22 161-183 38-60 (159)
14 2oiz_A Aromatic amine dehydrog 22.6 2.3E+02 0.0079 23.0 7.0 34 77-112 35-69 (361)
15 1una_A GA unassembled coat pro 22.2 43 0.0015 23.9 1.9 36 38-74 94-129 (129)
16 4afx_B Protein Z dependent pro 21.3 1.2E+02 0.004 16.9 3.7 16 69-84 8-23 (36)
No 1
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=100.00 E-value=6.8e-36 Score=276.60 Aligned_cols=164 Identities=21% Similarity=0.401 Sum_probs=142.0
Q ss_pred CCCCCeeecCCcEEEEEEEEEcchHHHHHHhc---CCCCCCHHHHHHHHHHHHHhcCCchHHHHhhccccceEEEEEECC
Q 029311 5 QNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYG---LSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCK 81 (195)
Q Consensus 5 ~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~---~~~s~sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FAfvl~D~~ 81 (195)
.+.||+.+.+++++++|||+|||+.+||++|. .|++.||+|+|+++|+ ++|. +++++|+|+|||++||.+
T Consensus 57 ~~~QP~~~~~~~~~lv~NGeIyN~~eLr~~L~~~~~f~s~sDtEvil~l~~---~~g~----~~l~~l~G~fa~~i~d~~ 129 (553)
T 1ct9_A 57 AGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQ---EKGP----EFLDDLQGMFAFALYDSE 129 (553)
T ss_dssp TCCSSEECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCSCCTTHHHHHHHH---HHTT----TTGGGCCEEEEEEEEETT
T ss_pred CCCCCeEeCCCCEEEEEEEEEECHHHHHHHHhccCccCCCCcHHHHHHHHH---HHHH----HHHHhCCccEEEEEEECC
Confidence 57899999888999999999999999999986 3889999999999998 5676 899999999999999998
Q ss_pred CCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEEeCCc-eEEEecCCCccc-cccCCC---
Q 029311 82 AGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSEQG-LMSFEHPTREMK-AMPRID--- 156 (195)
Q Consensus 82 ~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~~~~g-~~~y~~p~~~~~-~~~~~d--- 156 (195)
+++++++||++|++||||+...++.++||||.++|...+ +.|.+|||||++..++| +++||+|.|... ..+..+
T Consensus 130 ~~~l~~aRD~~G~~PLy~~~~~~~~~~faSe~~al~~~~-~~i~~l~pG~~~~~~~g~~~~yw~~~~~~~~~~~~~~~~~ 208 (553)
T 1ct9_A 130 KDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVC-RTIKEFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDK 208 (553)
T ss_dssp TTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTTTTC-SEEEECCTTEEEETTTCSEEECCCCGGGSHHHHTTCCCCH
T ss_pred CCEEEEEECCCCCCCeEEEEecCCEEEEeechHHHHhhc-CCEEEECCCeEEEEcCCcEEEeecCCccccccCCCHHHHH
Confidence 899999999999999999995457899999999998776 67999999999887666 889999876531 111111
Q ss_pred -----------CccceecccEEEEeccCCCC
Q 029311 157 -----------SEGVMCGANFKVDVQSRMRS 176 (195)
Q Consensus 157 -----------~~~~~~~~~~~v~~~~~l~~ 176 (195)
..+++++++++|.|||||||
T Consensus 209 ~~lr~~L~~aV~~rl~sdvpvgv~LSGGlDS 239 (553)
T 1ct9_A 209 NELRQALEDSVKSHLMSDVPYGVLLSGGLDS 239 (553)
T ss_dssp HHHHHHHHHHHHHHTCCSSCEEEECCSSHHH
T ss_pred HHHHHHHHHHHHHHhcCCCceEEeCCCCccH
Confidence 14678999999999999993
No 2
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=100.00 E-value=1.6e-33 Score=258.77 Aligned_cols=160 Identities=17% Similarity=0.170 Sum_probs=131.5
Q ss_pred CCCeeecC----CcEEEEEEEEEcchHHHHHHhc-CCCCCCHHHHHHHHHHHHHhcCCchHHHHhhccccceEEEEEECC
Q 029311 7 WRRWFCGL----HNVYCMFMGSLNNLSSLNKQYG-LSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCK 81 (195)
Q Consensus 7 ~QP~~~~~----~~~~lv~NG~I~N~~eL~~~l~-~~~s~sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FAfvl~D~~ 81 (195)
.||++..+ ++++++|||+|||+.+||++|. .|++.||+|+|+++|+ ++|. +++++|+|+|||++||.+
T Consensus 57 ~QP~~~~~Pf~~~~~~lv~NGeIyN~~eLr~~L~~~f~t~sDtEvil~l~~---~~g~----~~~~~l~G~fA~~i~d~~ 129 (513)
T 1jgt_A 57 APDRAVARSLTGAPTTAVLAGEIYNRDELLSVLPAGPAPEGDAELVLRLLE---RYDL----HAFRLVNGRFATVVRTGD 129 (513)
T ss_dssp CGGGGEEEECSSSSEEEEEEEEESCHHHHHHTSCSSCCCSSHHHHHHHHHH---HHGG----GGGGTCCEEEEEEEEETT
T ss_pred CCCcccCCcCCCCCEEEEEEEEEeCHHHHHHHhCCCCCCCCHHHHHHHHHH---HHhH----HhHhhcCeeEEEEEEECC
Confidence 59998765 7899999999999999999985 3889999999999998 5675 899999999999999964
Q ss_pred CCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhc---------------cCceEEecCCeEEEeC--Cc---eEE
Q 029311 82 AGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASC---------------AKSFAPFPAGCMFHSE--QG---LMS 141 (195)
Q Consensus 82 ~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~---------------~~~i~~lppG~~~~~~--~g---~~~ 141 (195)
+++++|||+|++||||+.. ++.++||||+++|...+ -+.|.++||||++..+ +| .++
T Consensus 130 --~l~~aRD~~G~kPLyy~~~-~~~~~faSe~~aL~~~~~~~~~~l~~~~~~t~~~~i~~l~pG~~l~i~~~~g~~~~~~ 206 (513)
T 1jgt_A 130 --RVLLATDHAGSVPLYTCVA-PGEVRASTEAKALAAHRDPKGFPLADARRVAGLTGVYQVPAGAVMDIDLGSGTAVTHR 206 (513)
T ss_dssp --EEEEEECTTCCSCCEEEEE-TTEEEEESCHHHHHTC--CCCCCCTTSEECSSCSSCEECCTTEEEEEETTTTEEEEEE
T ss_pred --EEEEEECCCCCceeEEEEe-CCEEEEcchHHHHHhccCcccccccCCCccccccceEEcCCCcEEEEEcCCCCEEEEe
Confidence 4999999999999999988 57999999999998765 2689999999997654 55 468
Q ss_pred EecCCCcccc------c-------cCCCCccceecccEEEEeccCCCC
Q 029311 142 FEHPTREMKA------M-------PRIDSEGVMCGANFKVDVQSRMRS 176 (195)
Q Consensus 142 y~~p~~~~~~------~-------~~~d~~~~~~~~~~~v~~~~~l~~ 176 (195)
||++...... + ......+++++++.+|.+||||||
T Consensus 207 yw~~~~~~~~~~~~~~~~~l~~~L~~aV~~rl~sd~~vgv~LSGGlDS 254 (513)
T 1jgt_A 207 TWTPGLSRRILPEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDS 254 (513)
T ss_dssp CCCCCCSCBCCCHHHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSHHH
T ss_pred ecCCcccccCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCcHHH
Confidence 9887543210 0 001114567899999999999993
No 3
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=99.96 E-value=1.9e-30 Score=237.67 Aligned_cols=161 Identities=10% Similarity=0.064 Sum_probs=131.1
Q ss_pred CCCCCeeecCCcEEEEEEEEEcchH---HHHHHhcC-CCCCCHHHHHHHHHHHHHhcCCchHHHHhhccccceEEEEEEC
Q 029311 5 QNWRRWFCGLHNVYCMFMGSLNNLS---SLNKQYGL-SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDC 80 (195)
Q Consensus 5 ~~~QP~~~~~~~~~lv~NG~I~N~~---eL~~~l~~-~~s~sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FAfvl~D~ 80 (195)
-+.||+.+.+++++++ |+|||+. +||++|.. |.+.||+|+|+++|+ ++|. +++++|+|+|||++||.
T Consensus 41 ~~~QP~~~~~~~~~l~--GeI~N~~~~~eLr~~l~g~f~s~sDtEvil~l~~---~~g~----~~l~~l~G~fa~~i~d~ 111 (503)
T 1q15_A 41 GHYQKCEMERGTAYLI--GSLYNRTFLIGLAGVWEGEAYLANDAELLALLFT---RLGA----NALALAEGDFCFFIDEP 111 (503)
T ss_dssp CCEEEEECSSSEEEEE--ECCSCHHHHHHHHTTTCGGGGGCCHHHHHHHHHH---HHCG----GGGGGCCSSEEEEEECT
T ss_pred CCCCCcCcCCCeEEEE--EEEeCCCChHHHHHHhhCCCCCCChHHHHHHHHH---HHHH----HHHHHcCEEEEEEEEeC
Confidence 4689999887888888 9999999 99998863 778999999999998 5775 89999999999999998
Q ss_pred CCCEEEEEEeCCCCeeEEEEEeCCCe-----------------EEEEeCchhhhhh-------ccCceEEecCCeEEEe-
Q 029311 81 KAGTIFAALDADEGVRLFWGIAADGS-----------------VVISDNLELIKAS-------CAKSFAPFPAGCMFHS- 135 (195)
Q Consensus 81 ~~~~l~~aRD~~G~~PLyyg~~~dg~-----------------~~faSe~~aL~~~-------~~~~i~~lppG~~~~~- 135 (195)
.++ ++++|||+|++||||+.. ++. ++||||.++|... ..+.|.++|||+++..
T Consensus 112 ~~~-l~~aRD~~G~rPL~y~~~-~~~~~t~~l~l~~~~~~~~~~~faSE~~al~~~~~~~~~T~~~~v~~l~pG~~~~i~ 189 (503)
T 1q15_A 112 NGE-LTVITESRGFSPVHVVQG-KKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTYTPVKNAQRLKPGAVHVLT 189 (503)
T ss_dssp TSC-EEEEECSSSSSCCEEEES-SSEEEESCHHHHHHHHCTTSSCBCCHHHHTTCSCCCTTCCSBTTEEECCSSEEEEEE
T ss_pred CCC-EEEEECCCCCeeEEEEEe-CCceecccccccccccCCcceEEecchHHHHhccCCCCCcccCCeEEECCCeEEEEe
Confidence 878 999999999999999987 467 8999999999765 1368999999999654
Q ss_pred CCc------eEEEecCCCcccc--------c-------cCCCCccceecccEEEEeccCCCC
Q 029311 136 EQG------LMSFEHPTREMKA--------M-------PRIDSEGVMCGANFKVDVQSRMRS 176 (195)
Q Consensus 136 ~~g------~~~y~~p~~~~~~--------~-------~~~d~~~~~~~~~~~v~~~~~l~~ 176 (195)
.+| .++||++....+. + ......++.++++.+|.+|||+||
T Consensus 190 ~~g~~~~~~~~~yw~~~~~~~~~~~~~~~~~~~l~~~L~~aV~~rl~sd~~v~v~LSGGlDS 251 (503)
T 1q15_A 190 HDSEGYSFVESRTLTTPASNQLLALPREPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDS 251 (503)
T ss_dssp ECTTCCEEEEEEESCCCCCCSCBCCCHHHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHH
T ss_pred CCCcccccceeeecCCcccccccCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCCHHH
Confidence 345 5678886543210 0 001114567899999999999993
No 4
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=99.95 E-value=1.5e-27 Score=216.14 Aligned_cols=134 Identities=17% Similarity=0.262 Sum_probs=114.3
Q ss_pred CCCCeee---cCCcEEEEEEEEEcchHHHHHHhc----CCCCCCHHHHHHHHHHHHHhcCCc----hHHHHhhccccceE
Q 029311 6 NWRRWFC---GLHNVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGPY----PAHQVLRDLDGSFG 74 (195)
Q Consensus 6 ~~QP~~~---~~~~~~lv~NG~I~N~~eL~~~l~----~~~s~sD~evi~~ly~~~~~~G~~----~~~~~l~~L~G~FA 74 (195)
+.||+.. .+++++++|||+|+|+++||++|. .|.+.||+|+|+++|. +++.. .+.+++++|+|+||
T Consensus 83 n~qP~~~~~~~~g~~~l~hNG~I~N~~~Lr~~L~~~g~~f~~~sDsEvi~~l~~---~~~~~~~~~a~~~~~~~l~G~fa 159 (459)
T 1ao0_A 83 NVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIK---RSGHFTLKDQIKNSLSMLKGAYA 159 (459)
T ss_dssp GSSSEEEBCTTTCCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHHHHHHH---TCCCSSHHHHHHHHHTTCCEEEE
T ss_pred CCCCceeccCCCCcEEEEEEEEecCHHHHHHHHHhcCCcCCCCCHHHHHHHHHH---HhccCCHHHHHHHHHHhhccceE
Confidence 6899987 567899999999999999999986 2889999999999998 45421 24589999999999
Q ss_pred EEEEECCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEEe-CCce--EEEecC
Q 029311 75 FVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHS-EQGL--MSFEHP 145 (195)
Q Consensus 75 fvl~D~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~~-~~g~--~~y~~p 145 (195)
|++|| .++++++||++|++||||+.. ++.++||||.++|.....+.++++|||+++.. .+|+ .+||.+
T Consensus 160 ~~i~d--~~~l~~~RD~~G~rPL~~~~~-~~~~~~ASE~~al~~~~~~~i~~l~pG~~~~i~~~~~~~~~~~~~ 230 (459)
T 1ao0_A 160 FLIMT--ETEMIVALDPNGLRPLSIGMM-GDAYVVASETCAFDVVGATYLREVEPGEMLIINDEGMKSERFSMN 230 (459)
T ss_dssp EEEEC--SSEEEEEECTTCCSCCEEEEE-TTEEEEESSTHHHHHHTCEEEEECCTTEEEEEETTEEEEEESCSS
T ss_pred EEEEe--CCEEEEEECCCCCCCeEEEec-CCEEEEEECchHHhcCCCceEEEECCCEEEEEECCceEEEecCCC
Confidence 99999 479999999999999999998 47899999999998764467999999999654 5663 467765
No 5
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=99.95 E-value=6.5e-27 Score=195.42 Aligned_cols=133 Identities=15% Similarity=0.219 Sum_probs=111.6
Q ss_pred CCCCCeeecCCcEEEEEEEEEcchHHHHHHhc----CCCCCCHHHHHHHHHHHHHhcCCch---HHHHhhccccceEEEE
Q 029311 5 QNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGPYP---AHQVLRDLDGSFGFVL 77 (195)
Q Consensus 5 ~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~----~~~s~sD~evi~~ly~~~~~~G~~~---~~~~l~~L~G~FAfvl 77 (195)
.+.||+.+ ++++++|||+|||+++||++|. .|.+.||+|+|+++|+.+.+.|... +.+++++|+|+|||++
T Consensus 83 ~n~qP~~~--~~~~l~hNG~I~N~~~lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~g~~~~~ai~~~~~~l~G~fa~~i 160 (240)
T 1xff_A 83 VNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVI 160 (240)
T ss_dssp TTSSCEEE--TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHHHHHHHGGGCCEEEEEEE
T ss_pred ccCCCccc--CCEEEEEEEEECCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcccceEEEE
Confidence 36899987 7899999999999999999986 2889999999999998654334322 4589999999999999
Q ss_pred EECC-CCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEEeC-CceEEEec
Q 029311 78 YDCK-AGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHSE-QGLMSFEH 144 (195)
Q Consensus 78 ~D~~-~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~~~-~g~~~y~~ 144 (195)
||.+ .++++++||+ +||||+.. ++.++||||.++|...+. .+.++|||+++..+ ++++.|..
T Consensus 161 ~d~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~-~~~~l~pG~~~~i~~~~~~~~~~ 224 (240)
T 1xff_A 161 MDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTR-RFIFLEEGDIAEITRRSVNIFDK 224 (240)
T ss_dssp EETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCS-EEEECCTTCEEEECSSCEEEECT
T ss_pred EecCCCCEEEEEECC---CceEEEEe-CCEEEEEECHHHHHhhCC-eEEEECCCEEEEEECCeEEEEeC
Confidence 9985 5899999997 99999997 468999999999988774 58999999997654 55776643
No 6
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=99.92 E-value=2.3e-24 Score=197.46 Aligned_cols=133 Identities=12% Similarity=0.129 Sum_probs=109.6
Q ss_pred CCCCCeeecC-CcEEEEEEEEEcchHHHHHHhc-----CCCCCCHHHHHHHHHHHHHh-cCC------c---hHHHHhhc
Q 029311 5 QNWRRWFCGL-HNVYCMFMGSLNNLSSLNKQYG-----LSKGSNEAMFVIEAYRTLRD-RGP------Y---PAHQVLRD 68 (195)
Q Consensus 5 ~~~QP~~~~~-~~~~lv~NG~I~N~~eL~~~l~-----~~~s~sD~evi~~ly~~~~~-~G~------~---~~~~~l~~ 68 (195)
-..||++... ++++++|||+|+|+.+||++|. .|.+.||+|+|+++|..+.+ +|. . .+.+++++
T Consensus 83 ~n~QP~~~~~~~~~~l~hNG~i~N~~eLr~~L~~~g~~~f~s~sDsEvi~~l~~~~~~~~g~~~~~~~~~~~a~~~~~~~ 162 (504)
T 1ecf_A 83 SEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRL 162 (504)
T ss_dssp SCCSCEEECSSSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSSSCCHHHHHHHHHHHHHH
T ss_pred cccCCeEeccCCCEEEEEeeeecCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHhccccccccccHHHHHHHhhhh
Confidence 4789998643 5699999999999999999884 37899999999999975432 242 1 14578999
Q ss_pred cccceEEEEEECCCCEEEEEEeCCCCeeEEEEEeC--C--CeEEEEeCchhhhhhccCceEEecCCeEEE-eCCc
Q 029311 69 LDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAA--D--GSVVISDNLELIKASCAKSFAPFPAGCMFH-SEQG 138 (195)
Q Consensus 69 L~G~FAfvl~D~~~~~l~~aRD~~G~~PLyyg~~~--d--g~~~faSe~~aL~~~~~~~i~~lppG~~~~-~~~g 138 (195)
|+|+|||++|+. .++++++|||+|+|||||+... + +.++||||.++|.....+.+++++||+++. ..+|
T Consensus 163 l~G~fa~v~~~~-~~~l~a~RD~~GirPL~~g~~~~~~g~~~~~~ASE~~al~~~~~~~v~~l~PGe~v~i~~~g 236 (504)
T 1ecf_A 163 IRGAYACVAMII-GHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDVAPGEAIYITEEG 236 (504)
T ss_dssp CCEEEEEEEEET-TTEEEEEECTTCCSCCEEEEEECSSSCEEEEEESSTHHHHHHTCEEEEECCTTEEEEEETTC
T ss_pred cCccceEEEEEc-CCeEEEEECCCCCCceEEeecccCCCceEEEEEeCchHhhccCccEEEECCCCeEEEEeCCC
Confidence 999999999985 3589999999999999999972 3 379999999999877656799999999854 4577
No 7
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=99.91 E-value=3.1e-24 Score=200.22 Aligned_cols=131 Identities=15% Similarity=0.238 Sum_probs=111.9
Q ss_pred CCCCeeecCCcEEEEEEEEEcchHHHHHHhc----CCCCCCHHHHHHHHHHHHHhcCCc---hHHHHhhccccceEEEEE
Q 029311 6 NWRRWFCGLHNVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGPY---PAHQVLRDLDGSFGFVLY 78 (195)
Q Consensus 6 ~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~----~~~s~sD~evi~~ly~~~~~~G~~---~~~~~l~~L~G~FAfvl~ 78 (195)
+.||+.+ ++++++|||+|||+++||++|. .|.+.||+|+|+++|+++.++|.+ .+.+++++|+|+|||++|
T Consensus 84 n~qP~~~--~~~~lvhNG~I~N~~~Lr~~L~~~g~~f~s~tDtEvi~~l~~~~~~~g~~~~~av~~~~~~l~G~fa~~i~ 161 (608)
T 2bpl_A 84 NAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIM 161 (608)
T ss_dssp GCSCEEE--TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHHHHHHHHHHHTTCCCHHHHHHHHGGGCCSSEEEEEE
T ss_pred CCCCccC--CCEEEEEEEEEeCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcCceEEEEE
Confidence 5799987 7899999999999999999986 388999999999999865434643 245899999999999999
Q ss_pred ECCC-CEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchhhhhhccCceEEecCCeEEEe-CCceEEEe
Q 029311 79 DCKA-GTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAGCMFHS-EQGLMSFE 143 (195)
Q Consensus 79 D~~~-~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~aL~~~~~~~i~~lppG~~~~~-~~g~~~y~ 143 (195)
|.++ ++++++||+ +||||+.. ++.++||||.++|...+ +.+.+++||+++.. .+|++.+.
T Consensus 162 d~~~~~~l~~aRd~---~PL~~g~~-~~~~~~aSe~~al~~~~-~~~~~l~~G~i~~i~~~~~~~~~ 223 (608)
T 2bpl_A 162 DSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVT-RRFIFLEEGDIAEITRRSVNIFD 223 (608)
T ss_dssp ETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTC-CEEEECCTTCEEEECSSCEEEEC
T ss_pred ecCCCCEEEEEECC---CceEEEEe-CCeEEEEechHHHHhcC-CeEEEECCCeEEEEECCeEEEEe
Confidence 9887 899999997 99999998 46899999999998876 56899999999654 45666654
No 8
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=99.88 E-value=2e-22 Score=171.91 Aligned_cols=130 Identities=14% Similarity=0.160 Sum_probs=100.6
Q ss_pred CCCCeeecCCcEEEEEEEEEcchHHHHHHhcC---------CCCCCHHHHHHHHHHHHHhcCC--chHHHHhhccccc--
Q 029311 6 NWRRWFCGLHNVYCMFMGSLNNLSSLNKQYGL---------SKGSNEAMFVIEAYRTLRDRGP--YPAHQVLRDLDGS-- 72 (195)
Q Consensus 6 ~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~~---------~~s~sD~evi~~ly~~~~~~G~--~~~~~~l~~L~G~-- 72 (195)
+.||+.. ++++++|||+|+|+++||++|.. +.+.||+|+|+++|......+. ..+.+++++|+|+
T Consensus 100 n~qPf~~--g~~~~~HNG~I~N~~~Lr~~L~~~g~~~~f~~~~~~TDSEvi~~l~~~~~~~~~~~~al~~~l~~l~G~~~ 177 (274)
T 3mdn_A 100 NCHPFAA--RRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVLFLLALSEGLEHDPHGALARAIARLEGLSR 177 (274)
T ss_dssp -CCCEEE--TTEEEEEEEEETTGGGGHHHHHHTSCHHHHTTCCSCCHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCccc--CCEEEEEeeEEcCHHHHHHHHHhhCCcceecCCCCCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhHHh
Confidence 6799986 78999999999999999988751 2689999999999953211111 1255899999998
Q ss_pred ---------eEEEEEECCCCEEEEEEeC-CCCeeEEEEEeCC--CeEEEEeCchhhhhhccCceEEecCCeEEEe-CCce
Q 029311 73 ---------FGFVLYDCKAGTIFAALDA-DEGVRLFWGIAAD--GSVVISDNLELIKASCAKSFAPFPAGCMFHS-EQGL 139 (195)
Q Consensus 73 ---------FAfvl~D~~~~~l~~aRD~-~G~~PLyyg~~~d--g~~~faSe~~aL~~~~~~~i~~lppG~~~~~-~~g~ 139 (195)
|+|+++| .++|+++||+ .|++||+|+...+ +.++||||. |...+ +.+.++|||++++. ++|+
T Consensus 178 ~~g~~~~~a~~~~~~d--~~~l~a~Rd~~~G~~Pll~~~~~~~~~~~~vASE~--l~~~~-~~~~~v~pGeiv~i~~~~v 252 (274)
T 3mdn_A 178 AHGTTPHMRLSAAFSD--GQTLYAARYSSDHIAPSVYYRYSHARQGWAVVSEP--LETDE-GDWTELRPGRMLTIGAEGA 252 (274)
T ss_dssp HHSCSSSEEEEEEEEC--SSCEEEEEEESSSCCCCCEEEEETTTTEEEEESSC--C--CC-SCCEECCSSEEEEEETTEE
T ss_pred hcCcccCceEEEEEEc--CCEEEEEECCCCCCCCeEEEEEeCCCCEEEEEecc--cccCC-ceEEEECcCEEEEEeCCeE
Confidence 9999998 4689999998 9999987777643 689999999 43333 46899999999655 5566
Q ss_pred EEE
Q 029311 140 MSF 142 (195)
Q Consensus 140 ~~y 142 (195)
+.+
T Consensus 253 ~~~ 255 (274)
T 3mdn_A 253 AER 255 (274)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 9
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1
Probab=99.68 E-value=1.9e-17 Score=139.79 Aligned_cols=126 Identities=14% Similarity=0.050 Sum_probs=94.8
Q ss_pred CCCCeeec--CCcEEEEEEEEEcchHHHHHHhcCCCCCCHHHHHHHHHHHHHhc--C--C--chHHHHhhccc------c
Q 029311 6 NWRRWFCG--LHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDR--G--P--YPAHQVLRDLD------G 71 (195)
Q Consensus 6 ~~QP~~~~--~~~~~lv~NG~I~N~~eL~~~l~~~~s~sD~evi~~ly~~~~~~--G--~--~~~~~~l~~L~------G 71 (195)
..||++.. .++++++|||.|.|+++ |+++..|.+.||+|+|++++....+. + + ..+.+++++|. |
T Consensus 90 NahPf~~~~~~~~~a~aHNG~i~n~~~-r~~~~~~~s~TDSEvi~~li~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~G 168 (257)
T 1te5_A 90 NTHPFIRELGGRYWTFAHNGQLADFQP-KPGFYRPVGETDSEAAFCDLLNRVRRAFPEPVPVEVLLPVLISACDEYRKKG 168 (257)
T ss_dssp GCSCEEEEETTEEEEEEEESCBSSCCC-CCCSSCCSSCCHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHHHTTB
T ss_pred cCCCcEecCCCCeEEEEecCcccCchh-hhccCCcccCCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhcC
Confidence 57999865 46799999999999999 76655589999999999999653221 1 1 12345555554 9
Q ss_pred ceEEEEEECCCCEEEEEEe----------CCCCeeEEE-------EE---eCCCeEEEEeCchhhhhhccCceEEecCCe
Q 029311 72 SFGFVLYDCKAGTIFAALD----------ADEGVRLFW-------GI---AADGSVVISDNLELIKASCAKSFAPFPAGC 131 (195)
Q Consensus 72 ~FAfvl~D~~~~~l~~aRD----------~~G~~PLyy-------g~---~~dg~~~faSe~~aL~~~~~~~i~~lppG~ 131 (195)
.|+|++.| .++|+++|| |.|.+||+. +. ..+..++||||. |.. .+.++++|||+
T Consensus 169 ~~n~~l~~--g~~l~a~rd~~L~~~~~~~p~g~rpL~~~~~~i~~g~~~~~~~~~~vvASE~--l~~--~~~wr~v~pGe 242 (257)
T 1te5_A 169 VFNALISD--GDWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEP--LTD--NENWTLQQSGE 242 (257)
T ss_dssp CCEEEEES--SSCEEEECSSCEEEEEEESSCCCEEEECSSEEEEECCCSSTTCEEEEEESSC--SSS--SSSCEEECTTC
T ss_pred cEEEEEEc--CCEEEEEEcCCceEEeecCCCcccccccccceeecccccCCCCCEEEEEeCc--cCC--CCCeeEeCCCE
Confidence 99999998 468999999 999999976 31 112368999995 542 35789999999
Q ss_pred EEEeCCc
Q 029311 132 MFHSEQG 138 (195)
Q Consensus 132 ~~~~~~g 138 (195)
+++.++|
T Consensus 243 ~v~i~~~ 249 (257)
T 1te5_A 243 WVLWWGG 249 (257)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 9766544
No 10
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=99.62 E-value=1.4e-15 Score=151.93 Aligned_cols=123 Identities=12% Similarity=0.184 Sum_probs=97.4
Q ss_pred CCCCCeeecCCcEEEEEEEEEcchHHHHHHhc--------------------C-CCCCCHHHHHHHHHHHHHhcCCch--
Q 029311 5 QNWRRWFCGLHNVYCMFMGSLNNLSSLNKQYG--------------------L-SKGSNEAMFVIEAYRTLRDRGPYP-- 61 (195)
Q Consensus 5 ~~~QP~~~~~~~~~lv~NG~I~N~~eL~~~l~--------------------~-~~s~sD~evi~~ly~~~~~~G~~~-- 61 (195)
+.+||+. +++|||||.|+..+|+.+. . +.+.||+|++.++++.+...|...
T Consensus 220 ~~AQPf~------~laHNGeInn~~~nr~~m~are~~~~~~~~G~~l~~~~pii~~~~SDSevld~~lelL~~~g~~l~~ 293 (1479)
T 1ea0_A 220 PLAQPFR------MLAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSGSLDTVFEVMVRAGRTAPM 293 (1479)
T ss_dssp TTSSCCS------SEEEEECCTTHHHHHHHHHHHGGGCCCSTTGGGHHHHCCSSCTTCCHHHHHHHHHHHHHHTTCCHHH
T ss_pred ccCCccE------EEEECChhhCHHHHHHHHHHhHhhhcCchhhhhHHhcCCcCCCCCCcHHHHHHHHHHHHHcCCCHHH
Confidence 4579984 3999999999999996642 1 678999999977766543344321
Q ss_pred --------------------------HHHHhhccccceEEEEEECCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeCchh
Q 029311 62 --------------------------AHQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLEL 115 (195)
Q Consensus 62 --------------------------~~~~l~~L~G~FAfvl~D~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe~~a 115 (195)
...+++.++|.||+++.| .+.++++|||.|.|||.|+.++|+.+++|||..+
T Consensus 294 A~~~liPeaw~~~~~m~~~~~~fye~~~~~me~~dGp~slv~~d--g~~l~a~~DrnGlRPl~~g~t~d~~~v~ASE~ga 371 (1479)
T 1ea0_A 294 VKMMLVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTD--GRWVVGGMDRNGLRPMRYTITTDGLIIGGSETGM 371 (1479)
T ss_dssp HHHHHSCCCCC---CCCHHHHHHHHHHHHHCCCCCSSEEEEECS--SSEEEEECCTTCCSCCEEEEETTSEEEECSSSTT
T ss_pred HHHHhCchhhcccccCCHHHHHHHHHHHHhhccCCCcEEEEEEe--CCEEEEEecCCCCcceEEEEECCCEEEEEccccc
Confidence 114578999999999987 5799999999999999999997778999999999
Q ss_pred hhhhccCceE--EecCCeEEEe
Q 029311 116 IKASCAKSFA--PFPAGCMFHS 135 (195)
Q Consensus 116 L~~~~~~~i~--~lppG~~~~~ 135 (195)
|.-.+.+.++ ++.||+++..
T Consensus 372 ldi~~a~~vrkg~l~PGemv~i 393 (1479)
T 1ea0_A 372 VKIDETQVIEKGRLGPGEMIAV 393 (1479)
T ss_dssp SCCCGGGEEEEEECCTTCEEEE
T ss_pred ccCcchheeeccCCCCCeEEEE
Confidence 9765555556 8999998554
No 11
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=99.58 E-value=6.5e-15 Score=147.39 Aligned_cols=123 Identities=16% Similarity=0.151 Sum_probs=95.9
Q ss_pred CCCCCeeecCCcEEEEEEEEEcchHHHH------HH-----------h---c--CCCCCCHHHHHHHHHHHHHhcCCch-
Q 029311 5 QNWRRWFCGLHNVYCMFMGSLNNLSSLN------KQ-----------Y---G--LSKGSNEAMFVIEAYRTLRDRGPYP- 61 (195)
Q Consensus 5 ~~~QP~~~~~~~~~lv~NG~I~N~~eL~------~~-----------l---~--~~~s~sD~evi~~ly~~~~~~G~~~- 61 (195)
+.+||+. +++|||||.|+..+| +. | . .+.+.||+|++.++++.+.+.|...
T Consensus 216 ~~AQPf~------~LaHNGeInt~~~nrnwm~aR~~~~~s~~~~g~~l~~~~p~i~~~~SDSe~ld~~lelL~~~g~~l~ 289 (1520)
T 1ofd_A 216 PLAQPMR------LLGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSYNLDSALELLVRTGRSPL 289 (1520)
T ss_dssp GGSSCCS------SEEEEECCTTHHHHHHHHHHHGGGCCCTTCCHHHHHHHCCSCCTTSCHHHHHHHHHHHHHHTTCCHH
T ss_pred ccCCchh------eeEecchhhcHHHHHHHHHHHHHHhcCcccchhhHHhhCCcCCCCCCcHHHHHHHHHHHHhcCCCHH
Confidence 3579984 399999999998888 32 1 1 2678999999987776443344321
Q ss_pred --H---------------------------HHHhhccccceEEEEEECCCCEEEEEEeCCCCeeEEEEEeCCCeEEEEeC
Q 029311 62 --A---------------------------HQVLRDLDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGSVVISDN 112 (195)
Q Consensus 62 --~---------------------------~~~l~~L~G~FAfvl~D~~~~~l~~aRD~~G~~PLyyg~~~dg~~~faSe 112 (195)
+ ..+++.++|.||+++.| .+.++++|||.|.|||.|+.++|+.+++|||
T Consensus 290 ~A~~~liPeaw~~~~~m~~~~~~~~fyey~~~~me~~dGpaalv~~d--g~~l~a~~DrnGlRPl~~~~t~d~~~v~ASE 367 (1520)
T 1ofd_A 290 EAAMILVPEAYKNQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSD--GKIVGAGLDRNGLRPARYCITKDDYIVLGSE 367 (1520)
T ss_dssp HHHHHHSCCCCTTCGGGTTCHHHHHHHHHHTTTCCCCCSSEEEEEEC--SSEEEEEECTTCCSCCEEEEETTCCEEEESS
T ss_pred HHHHHhCcchhcccccccccHHHHHHHHHHHHhcccCCCCEEEEEEe--CCEEEEEecCCCCCceEEEEeCCCEEEEEcc
Confidence 1 13368999999999998 4799999999999999999997778999999
Q ss_pred chhhhhhccCceE--EecCCeEEEe
Q 029311 113 LELIKASCAKSFA--PFPAGCMFHS 135 (195)
Q Consensus 113 ~~aL~~~~~~~i~--~lppG~~~~~ 135 (195)
..+|.-.+.+.++ ++.||+++..
T Consensus 368 ~galdi~~a~~vrkg~l~PGemv~i 392 (1520)
T 1ofd_A 368 AGVVDLPEVDIVEKGRLAPGQMIAV 392 (1520)
T ss_dssp TTCSCCCGGGEEEEEECCTTCEEEE
T ss_pred cccccCcchheeeccCCCCCeEEEE
Confidence 9999765555566 8999998654
No 12
>1vk9_A Conserved hypothetical protein TM1506; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: UNL; 2.70A {Thermotoga maritima} SCOP: c.97.1.3
Probab=29.69 E-value=8.5 Score=29.43 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=20.7
Q ss_pred ccceEEEEEECCCCEEEEEEeCCCCeeEEE
Q 029311 70 DGSFGFVLYDCKAGTIFAALDADEGVRLFW 99 (195)
Q Consensus 70 ~G~FAfvl~D~~~~~l~~aRD~~G~~PLyy 99 (195)
+|.|++|+.+ .+.++-..++ |++|||=
T Consensus 27 e~~~ScVv~~--~~~i~ts~~r-Gv~pL~~ 53 (151)
T 1vk9_A 27 KKDLSLLAYS--GRSIFESKDS-GLKPVVE 53 (151)
T ss_dssp HTTCSEEEES--SSEEEEECCS-TTHHHHH
T ss_pred hCCeeEEEec--CCEEEEeCCc-ChHHHHH
Confidence 5899999954 4577777665 9999983
No 13
>1a34_A Protein (satellite tobacco mosaic virus); water structure, virus assembly, macromolecular interactions; HET: U; 1.81A {Tobacco necrosis satellite virus} SCOP: b.121.7.1
Probab=24.95 E-value=20 Score=26.14 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=17.6
Q ss_pred eecccEEEEeccCCC-CCCCCCcc
Q 029311 161 MCGANFKVDVQSRMR-SMPRVGSE 183 (195)
Q Consensus 161 ~~~~~~~v~~~~~l~-~~~~~~~~ 183 (195)
+--.||.|..+.|+. ++| |||-
T Consensus 38 vraipfevsvqsgiafkvp-vgsl 60 (159)
T 1a34_A 38 VRAIPFEVSVQSGIAFKVP-VGSL 60 (159)
T ss_dssp EEEEEEEEECCTTCCEEEE-GGGG
T ss_pred EEeeeeEEEeecCeEEeee-ccce
Confidence 345689999999998 888 8874
No 14
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=22.61 E-value=2.3e+02 Score=23.01 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=23.5
Q ss_pred EEECCCCEEEEEEeCCCCeeEEEEEeCCC-eEEEEeC
Q 029311 77 LYDCKAGTIFAALDADEGVRLFWGIAADG-SVVISDN 112 (195)
Q Consensus 77 l~D~~~~~l~~aRD~~G~~PLyyg~~~dg-~~~faSe 112 (195)
+||..++++. .+=+.|..| .....+|| .++++++
T Consensus 35 v~D~~t~~~~-~~i~~g~~p-~i~~spdg~~lyv~~~ 69 (361)
T 2oiz_A 35 VYDYTNGKFL-GMVPTAFNG-HVQVSNDGKKIYTMTT 69 (361)
T ss_dssp EEETTTCCEE-EEEECCEEE-EEEECTTSSEEEEEEE
T ss_pred EEECCCCeEE-EEecCCCCC-ceEECCCCCEEEEEEe
Confidence 7898777654 344568888 88888776 5666653
No 15
>1una_A GA unassembled coat protein dimer; unassembled virus coat protein dimer, bacteriophage, RNA- binding dimer, translational repressor; 2.80A {Enterobacteria phage GA} SCOP: d.85.1.1 PDB: 1gav_A
Probab=22.18 E-value=43 Score=23.95 Aligned_cols=36 Identities=11% Similarity=0.278 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCchHHHHhhccccceE
Q 029311 38 SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFG 74 (195)
Q Consensus 38 ~~s~sD~evi~~ly~~~~~~G~~~~~~~l~~L~G~FA 74 (195)
|.+.+|+++|..+++.+.+-|. |+.+.+..-.|.|+
T Consensus 94 fat~dd~~~i~kal~g~fk~gn-pi~~aiaa~sg~ya 129 (129)
T 1una_A 94 FAATDDVTVISKSLTGLFKVGN-PIAEAISSQSGFYA 129 (129)
T ss_dssp CCTTCCCHHHHHHHHHHSCTTS-HHHHHHHHTCCCCC
T ss_pred EecCCchhhhHHhhhhhhhcCC-ChHHHHhhcccccC
Confidence 7889999999999987655554 45566666667664
No 16
>4afx_B Protein Z dependent protease inhibitor; hydrolase inhibitor, serpin, protein Z dependent inhibitor, coagulation; 2.09A {Homo sapiens} PDB: 4aju_B
Probab=21.34 E-value=1.2e+02 Score=16.88 Aligned_cols=16 Identities=31% Similarity=0.804 Sum_probs=9.5
Q ss_pred cccceEEEEEECCCCE
Q 029311 69 LDGSFGFVLYDCKAGT 84 (195)
Q Consensus 69 L~G~FAfvl~D~~~~~ 84 (195)
.+-.|-|+|+|..++.
T Consensus 8 ~drPFlf~I~~~~t~~ 23 (36)
T 4afx_B 8 IDRPFHFMIYEETSGM 23 (36)
T ss_dssp CCSCEEEEEEETTTTE
T ss_pred eeCCEEEEEEECCCCc
Confidence 3556666776655543
Done!