BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029312
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain
Length = 222
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 68 GIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAE 127
G+P T +T ++ RGL D H +++ A ++ P+++ D G +T +
Sbjct: 150 GVP--LTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQ 207
>pdb|3I9W|A Chain A, Crystal Structure Of The E. Coli Histidine Kinase Sensor
Tors Sensor Domain
Length = 290
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 9 VKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFS 53
++K+ A+ +L++ +I I EDP +Q A + TV + +DL +
Sbjct: 202 LEKQLNNAVKILQRRQIRI--EDPGVRAQVATTLTTVSQYSDLLA 244
>pdb|3NRZ|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NRZ|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NVW|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVW|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVY|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVY|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
Length = 756
Score = 26.9 bits (58), Expect = 8.0, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 140 EDLPKYEEQLELKIAKAQLEELKKDALEAMETQK 173
+D+P+YE +L L++ + K +++ E QK
Sbjct: 24 DDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQK 57
>pdb|3EUB|C Chain C, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|L Chain L, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|U Chain U, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|4 Chain 4, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
Length = 762
Score = 26.9 bits (58), Expect = 8.0, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 140 EDLPKYEEQLELKIAKAQLEELKKDALEAMETQK 173
+D+P+YE +L L++ + K +++ E QK
Sbjct: 24 DDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQK 57
>pdb|3ETR|C Chain C, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3ETR|N Chain N, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3NS1|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NS1|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NVV|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVV|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVZ|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3NVZ|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
Length = 755
Score = 26.9 bits (58), Expect = 8.0, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 140 EDLPKYEEQLELKIAKAQLEELKKDALEAMETQK 173
+D+P+YE +L L++ + K +++ E QK
Sbjct: 24 DDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQK 57
>pdb|1FIQ|C Chain C, Crystal Structure Of Xanthine Oxidase From Bovine Milk
pdb|3B9J|C Chain C, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
pdb|3B9J|K Chain K, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
Length = 763
Score = 26.9 bits (58), Expect = 8.0, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 140 EDLPKYEEQLELKIAKAQLEELKKDALEAMETQK 173
+D+P+YE +L L++ + K +++ E QK
Sbjct: 25 DDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQK 58
>pdb|3SR6|C Chain C, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
pdb|3SR6|L Chain L, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
Length = 745
Score = 26.9 bits (58), Expect = 8.1, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 140 EDLPKYEEQLELKIAKAQLEELKKDALEAMETQK 173
+D+P+YE +L L++ + K +++ E QK
Sbjct: 24 DDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQK 57
>pdb|3FXQ|A Chain A, Crystal Structure Of The Lysr-Type Transcriptional
Regulator Tsar
pdb|3FXQ|B Chain B, Crystal Structure Of The Lysr-Type Transcriptional
Regulator Tsar
pdb|3FXR|A Chain A, Crystal Structure Of Tsar In Complex With Sulfate
pdb|3FXR|B Chain B, Crystal Structure Of Tsar In Complex With Sulfate
pdb|3FXU|A Chain A, Crystal Structure Of Tsar In Complex With Its Effector P-
Toluenesulfonate
pdb|3FXU|B Chain B, Crystal Structure Of Tsar In Complex With Its Effector P-
Toluenesulfonate
pdb|3FZJ|A Chain A, Tsar Low Resolution Crystal Structure, Tetragonal Form
pdb|3FZJ|B Chain B, Tsar Low Resolution Crystal Structure, Tetragonal Form
pdb|3FZJ|C Chain C, Tsar Low Resolution Crystal Structure, Tetragonal Form
pdb|3FZJ|D Chain D, Tsar Low Resolution Crystal Structure, Tetragonal Form
pdb|3FZJ|E Chain E, Tsar Low Resolution Crystal Structure, Tetragonal Form
pdb|3FZJ|F Chain F, Tsar Low Resolution Crystal Structure, Tetragonal Form
pdb|3FZJ|G Chain G, Tsar Low Resolution Crystal Structure, Tetragonal Form
pdb|3FZJ|H Chain H, Tsar Low Resolution Crystal Structure, Tetragonal Form
pdb|3FZJ|I Chain I, Tsar Low Resolution Crystal Structure, Tetragonal Form
pdb|3FZJ|J Chain J, Tsar Low Resolution Crystal Structure, Tetragonal Form
Length = 305
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 92 HGAEAMMMDALEKVEKEIKKPLMRNDKKGMAL 123
H ++ + A++++E E+K PL+ K+G++L
Sbjct: 27 HLSQPALSAAIQQLEDELKAPLLVRTKRGVSL 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,958,415
Number of Sequences: 62578
Number of extensions: 192196
Number of successful extensions: 583
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 543
Number of HSP's gapped (non-prelim): 73
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)