BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029312
(195 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SJ12|ATP7_ARATH Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis
thaliana GN=At2g21870 PE=1 SV=1
Length = 240
Score = 293 bits (749), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 144/195 (73%), Positives = 170/195 (87%)
Query: 1 MLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAY 60
MLK +F D+K KF+ A+ +LRKEKIT+ PEDPAAV QYANVMKT+R+KAD+FSESQRI +
Sbjct: 46 MLKGVFFDIKNKFQAAVDILRKEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKH 105
Query: 61 TIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKG 120
I+T T IPDAR YLL L+EIR RRGL DE GAEAMM +ALEKVEK+IKKPL+R+DKKG
Sbjct: 106 DIDTETQDIPDARAYLLKLQEIRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKG 165
Query: 121 MALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKD 180
M LL AEF+K NKKLGIRKEDLPKYEE LEL +AKAQL+ELK DA+EAME+QKK+EEF+D
Sbjct: 166 MDLLVAEFEKGNKKLGIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQD 225
Query: 181 EEMVEVKSLDVRNFL 195
EEM +VKSLD+RNF+
Sbjct: 226 EEMPDVKSLDIRNFI 240
>sp|Q21313|EPI1_CAEEL Laminin-like protein epi-1 OS=Caenorhabditis elegans GN=epi-1 PE=1
SV=1
Length = 3672
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 44/183 (24%), Positives = 87/183 (47%), Gaps = 15/183 (8%)
Query: 19 VLRKEKITIAPEDPAAVSQYANVMKTVREKAD-----LFSESQRI---AYTIETRTAGIP 70
+L++ + T+ + A+ QY +TV K + + E++++ T E +
Sbjct: 2277 LLKEAEETLMTLEAASADQYPEKAQTVPGKLEEIQKKIQEETEKLDKQKETFEAQKKRAE 2336
Query: 71 DARTYLLTLKEI-RERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFD 129
+ YL + +++ +E + D+ A M+ L KVE + + +D + + EF
Sbjct: 2337 ELAAYLNSAQQLLKESKSKADKSNNIAKMLQ-LTKVENLVAA--ITDDLERVEAAKGEFQ 2393
Query: 130 KINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSL 189
K+N +G E+L E E+ A L E + D EA+E KKR +DE+ V+++ +
Sbjct: 2394 KLNVAIGNITENLKDKRE--EMTHAVTTLNETRNDVAEALEAAKKRVR-RDEKSVDMQLV 2450
Query: 190 DVR 192
+ +
Sbjct: 2451 NAK 2453
>sp|O18416|TPM_DERPT Tropomyosin OS=Dermatophagoides pteronyssinus PE=1 SV=1
Length = 284
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 102 LEKVEKEIKKPLMRNDKKGMALLTAEFD--KINKKLGIRKEDLPKYEEQLELKIAKAQLE 159
L++V++++ + ++K AL TAE D +N+++ + +EDL + EE+ LKIA A+LE
Sbjct: 57 LDQVQEQLSAANTKLEEKEKALQTAEGDVAALNRRIQLIEEDLERSEER--LKIATAKLE 114
Query: 160 ELKKDALEA 168
E + A E+
Sbjct: 115 EASQSADES 123
>sp|Q23939|TPM_DERFA Tropomyosin OS=Dermatophagoides farinae PE=1 SV=2
Length = 284
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 102 LEKVEKEIKKPLMRNDKKGMALLTAEFD--KINKKLGIRKEDLPKYEEQLELKIAKAQLE 159
L++V++++ + ++K AL TAE D +N+++ + +EDL + EE+ LKIA A+LE
Sbjct: 57 LDQVQEQLSAANTKLEEKEKALQTAEGDVAALNRRIQLIEEDLERSEER--LKIATAKLE 114
Query: 160 ELKKDALEA 168
E + A E+
Sbjct: 115 EASQSADES 123
>sp|P58356|TORS_ECO57 Sensor protein TorS OS=Escherichia coli O157:H7 GN=torS PE=3 SV=1
Length = 914
Score = 30.4 bits (67), Expect = 7.2, Method: Composition-based stats.
Identities = 44/211 (20%), Positives = 88/211 (41%), Gaps = 45/211 (21%)
Query: 9 VKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKAD---LFSESQRIAYTIET- 64
++K+ A+ +L++ +I I EDP +Q A + TV + +D LF + I+ ++T
Sbjct: 232 LEKQLNNAVKILQRRQIRI--EDPGVRAQVATTLTTVSQYSDLLALFQQDSEISNHLQTL 289
Query: 65 ------RTAGIPDARTYLLTLKEIRERRGLIDEHGAE----------------AMMMDAL 102
+ A + L+ E+R + GL A A+++
Sbjct: 290 AQNNIAQFAQFSSEVSQLVDTIELRNQHGLAHLEKASARGQYSLLLLGMVSLCALILILW 349
Query: 103 EKVEKEIKKPLMRNDKKGMALLTAEFDK-INKKLGIRKED---------------LPKYE 146
V + + +PL + LL + D + G+R+ D L ++
Sbjct: 350 RVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDTIGRLMDAFRSSVHALNRHR 409
Query: 147 EQLELKIAKAQLEELKKDALEAMETQKKREE 177
EQL ++ KA+ EL++ +E + + + E+
Sbjct: 410 EQLAAQV-KARTAELQELVIEHRQARAEAEK 439
>sp|A8WWH5|POP1_CAEBR Protein pop-1 OS=Caenorhabditis briggsae GN=pop-1 PE=3 SV=2
Length = 439
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 34/101 (33%)
Query: 79 LKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPL-----------------MRNDKKGM 121
+ + ERRG HG + K E IKKPL + ND+K
Sbjct: 179 MPQHNERRG----HGGGKV------KKEDHIKKPLNAFMWYMKENRPKLLEEVGNDQKQS 228
Query: 122 ALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELK 162
A ++NK+LG R DLPK E+Q ++AK E K
Sbjct: 229 A-------ELNKELGKRWHDLPKEEQQKYFEMAKKDRESHK 262
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,420,997
Number of Sequences: 539616
Number of extensions: 2658366
Number of successful extensions: 14883
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 483
Number of HSP's that attempted gapping in prelim test: 13902
Number of HSP's gapped (non-prelim): 1321
length of query: 195
length of database: 191,569,459
effective HSP length: 111
effective length of query: 84
effective length of database: 131,672,083
effective search space: 11060454972
effective search space used: 11060454972
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)