Query 029312
Match_columns 195
No_of_seqs 22 out of 24
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 17:47:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o39_A Periplasmic protein rel 80.7 3.5 0.00012 31.2 5.7 53 8-60 21-99 (108)
2 3ubc_A Hemoglobin-like flavopr 58.3 33 0.0011 24.7 6.5 82 56-154 22-103 (131)
3 3itf_A Periplasmic adaptor pro 58.2 24 0.00082 27.8 6.2 32 28-59 83-126 (145)
4 3kwo_A Putative bacterioferrit 52.0 34 0.0012 25.9 6.0 88 11-109 52-139 (152)
5 4eve_A Neutrophil-activating p 50.5 40 0.0014 26.2 6.3 89 10-109 68-156 (164)
6 2fup_A Hypothetical protein PA 47.5 49 0.0017 24.5 6.2 63 2-64 8-84 (157)
7 3iq1_A DPS family protein; csg 45.7 57 0.0019 24.8 6.4 85 13-109 67-151 (159)
8 3opc_A Uncharacterized protein 42.4 68 0.0023 24.1 6.3 62 2-63 9-85 (154)
9 1o9r_A Agrobacterium tumefacie 39.3 62 0.0021 24.6 5.7 87 11-109 64-151 (162)
10 4hrt_B Hemoglobin B chain; oxy 39.1 96 0.0033 23.1 6.7 88 55-154 33-126 (152)
11 3oeo_A Spheroplast protein Y; 37.0 32 0.0011 26.5 3.7 32 28-59 71-114 (138)
12 4hrt_A Globin-2 A chain; oxyge 35.5 62 0.0021 24.2 5.1 88 55-154 31-124 (150)
13 2fjc_A Antigen TPF1; mini ferr 34.9 64 0.0022 24.4 5.1 88 11-109 60-147 (156)
14 4a5o_A Bifunctional protein fo 34.5 70 0.0024 27.8 5.8 64 4-68 16-91 (286)
15 3r8n_J 30S ribosomal protein S 34.0 34 0.0011 24.9 3.2 32 22-53 1-32 (98)
16 3ngx_A Bifunctional protein fo 32.7 59 0.002 28.1 5.1 63 3-68 11-82 (276)
17 1gcv_B Hemoglobin; oxygen stor 31.9 1E+02 0.0035 22.8 5.8 87 53-155 19-106 (136)
18 3gff_A IROE-like serine hydrol 30.8 2.4E+02 0.0082 23.7 9.0 52 30-82 275-327 (331)
19 2bk6_A Non-heme iron-containin 30.5 97 0.0033 23.3 5.5 88 11-109 55-143 (156)
20 1zs3_A Lactococcus lactis Mg13 29.8 1E+02 0.0035 24.7 5.7 93 6-109 65-159 (182)
21 4hde_A SCO1/SENC family lipopr 29.5 28 0.00097 26.1 2.2 36 6-41 55-92 (170)
22 4abx_A DNA repair protein RECN 28.5 2E+02 0.007 22.2 8.3 37 115-151 118-157 (175)
23 2k48_A Nucleoprotein; viral pr 28.4 1.7E+02 0.0058 22.5 6.4 76 92-172 27-105 (107)
24 1v54_E Cytochrome C oxidase po 27.2 36 0.0012 26.3 2.5 35 54-88 63-98 (109)
25 1zuj_A Hypothetical protein ll 26.7 99 0.0034 24.7 5.1 90 6-109 64-158 (179)
26 2o8s_A AGR_C_984P; all alpha-h 26.0 53 0.0018 29.4 3.7 59 43-104 66-133 (323)
27 2chp_A MRGA, metalloregulation 25.9 1.6E+02 0.0054 22.1 5.9 87 11-109 59-145 (153)
28 3lay_A Zinc resistance-associa 24.5 2.8E+02 0.0094 22.3 7.8 39 28-70 108-146 (175)
29 2c2u_A DPS, DNA-binding stress 23.8 1.5E+02 0.0052 24.0 5.8 84 15-109 111-194 (207)
30 2ahq_A Sigma-54, RNA polymeras 23.2 75 0.0025 22.6 3.4 16 42-57 59-74 (76)
31 2ef8_A C.ECOT38IS, putative tr 23.1 1.5E+02 0.0051 18.8 5.2 66 71-143 7-74 (84)
32 4a26_A Putative C-1-tetrahydro 23.1 2.2E+02 0.0076 24.7 7.0 64 4-68 17-93 (300)
33 3l4a_A Odorant binding protein 22.9 1.2E+02 0.004 22.9 4.6 66 39-112 5-70 (141)
34 3g46_A Globin-1; oxygen transp 22.8 85 0.0029 23.2 3.8 109 26-154 9-123 (146)
35 1xkp_A Putative membrane-bound 22.3 3.5E+02 0.012 22.7 8.9 84 34-121 48-147 (246)
36 2y69_E Cytochrome C oxidase su 22.1 34 0.0012 27.8 1.5 21 36-56 126-146 (152)
37 1use_A VAsp, vasodilator-stimu 22.0 1.4E+02 0.0046 19.8 4.2 39 136-175 3-41 (45)
38 2yjk_A AFP, DPS; metal-binding 20.8 1.4E+02 0.0048 22.7 4.8 86 11-109 67-152 (161)
39 2wlu_A DPS-like peroxide resis 20.8 2E+02 0.0067 22.3 5.7 85 14-109 77-162 (175)
40 2ca5_A MXIH; transport protein 20.6 1.3E+02 0.0044 22.3 4.2 27 11-42 28-54 (85)
41 2cf7_A DPR; peroxide resistanc 20.3 2.1E+02 0.0072 21.9 5.7 85 13-109 66-152 (165)
No 1
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=80.74 E-value=3.5 Score=31.24 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhhhhccc--------------cccCCCCHHHHHHHHHHHHHHHHh------------cCCCChHHHHHH
Q 029312 8 DVKKKFETALGVLRKEK--------------ITIAPEDPAAVSQYANVMKTVREK------------ADLFSESQRIAY 60 (195)
Q Consensus 8 ~vqkkF~~~l~~lkk~k--------------i~id~~D~aAV~~YA~~~~~ir~k------------~gl~s~~e~I~~ 60 (195)
+|+.+.+.++...+..- |+-++-|++||..++..+..+... ..|.+|+|+-+.
T Consensus 21 ~Qk~qir~L~~~~r~~~~~~~~~~r~~m~~Li~ad~FDEaaar~l~~~~~~~~~e~~v~~~r~~~qmy~lLTPEQk~q~ 99 (108)
T 3o39_A 21 AQKQQIREIMKGQRDQMKRPPLEERRAMHDIIASDTFDKAKAEAQIAKMEEQRKANMLAHMETQNKIYNILTPEQKKQF 99 (108)
T ss_dssp HHHHHHHHHHHTTTTSCCCCCHHHHHHHHHHHSSSSCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666666666654442 444678999999999998887665 789999998663
No 2
>3ubc_A Hemoglobin-like flavoprotein; oxygen-bound, autoxidation, nanotemplate, langmuir-blodgett, films, oxygen transport; HET: HEM; 1.65A {Methylacidiphilum infernorum V4} PDB: 3ubv_A* 3s1i_A* 3s1j_A*
Probab=58.29 E-value=33 Score=24.74 Aligned_cols=82 Identities=12% Similarity=0.139 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHhhCCccccccHhhHHHHHHHHHHHHHHh
Q 029312 56 QRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 135 (195)
Q Consensus 56 e~I~~tie~~~~~~~dvR~yL~~~~EiR~~~Gl~D~~g~~a~mm~ALdkvEK~igkpL~r~DkkGM~ll~ae~~ki~kkl 135 (195)
+--......++...|++|+|+.. |...=-..++.||+.+=+.+ +|-.+..-..+++..--.++
T Consensus 22 ~~g~~fy~rlf~~~P~~k~~F~~-----------d~~~h~~~l~~al~~~v~~l------d~~~~l~~~l~~L~~~H~~~ 84 (131)
T 3ubc_A 22 EIGLLFYANLFKEEPTVSVLFQN-----------PISSQSRKLMQVLGILVQGI------DNLEGLIPTLQDLGRRHKQY 84 (131)
T ss_dssp HHHHHHHHHHHHHCGGGGGGCCS-----------CHHHHHHHHHHHHHHHHHTG------GGGGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChHHHHHccc-----------cHHHHHHHHHHHHHHHHHhC------CChHHHHHHHHHHHHHHHHc
Confidence 34445556678888888888875 22222334677777765544 56667777778888877889
Q ss_pred CCCCCChhhHHHHHHHHHH
Q 029312 136 GIRKEDLPKYEEQLELKIA 154 (195)
Q Consensus 136 Gi~~eDl~K~~ee~el~~a 154 (195)
|++|+.++-+.+-+.--++
T Consensus 85 gV~p~~f~~~~~~Ll~~l~ 103 (131)
T 3ubc_A 85 GVVDSHYPLVGDCLLKSIQ 103 (131)
T ss_dssp TCCTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 9999999887765544443
No 3
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=58.21 E-value=24 Score=27.80 Aligned_cols=32 Identities=22% Similarity=0.143 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHh------------cCCCChHHHHH
Q 029312 28 APEDPAAVSQYANVMKTVREK------------ADLFSESQRIA 59 (195)
Q Consensus 28 d~~D~aAV~~YA~~~~~ir~k------------~gl~s~~e~I~ 59 (195)
++-|+++|..+++.+..+..+ ..|.+|+|+-+
T Consensus 83 d~fDeaa~ral~~~~~~~~~e~~v~r~k~~~qiy~vLTPEQk~q 126 (145)
T 3itf_A 83 ENFDENAVRAQAEKMANEQIARQVEMAKVRNQMYRLLTPEQQAV 126 (145)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHH
Confidence 567999999999998887665 68899999865
No 4
>3kwo_A Putative bacterioferritin; alpha-helix, bacterial ferritin fold, structural genomics, center for structural genomics of infectious diseases; 1.99A {Campylobacter jejuni} SCOP: a.25.1.0
Probab=51.98 E-value=34 Score=25.92 Aligned_cols=88 Identities=13% Similarity=0.090 Sum_probs=53.3
Q ss_pred HHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCCc
Q 029312 11 KKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLID 90 (195)
Q Consensus 11 kkF~~~l~~lkk~ki~id~~D~aAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~dvR~yL~~~~EiR~~~Gl~D 90 (195)
..+..+.+-++.+.-+ .|+.+..+.+++..-. ...|-+++.+-|...++.+..-+...|.-...+.+ ..
T Consensus 52 ~~~D~iAERI~~LGg~-P~~t~~~~~~~s~i~e---~~~~~~~~~eml~~~l~~~~~~i~~~r~~i~~a~~-------~~ 120 (152)
T 3kwo_A 52 ELFDSCAERVLQLGEK-AITCQKVLMENAKSPK---VAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEK-------ES 120 (152)
T ss_dssp HHHHHHHHHHHHTTSC-CCCCHHHHHHHCCSCC---CCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TT
T ss_pred HHHHHHHHHHHHcCCC-CCCCHHHHHhHCCCCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CC
Confidence 3333344445555544 2677777766553321 13344578888888888776666555555544444 34
Q ss_pred hhhHHHHHHHHHHHHHHhh
Q 029312 91 EHGAEAMMMDALEKVEKEI 109 (195)
Q Consensus 91 ~~g~~a~mm~ALdkvEK~i 109 (195)
+.++..+|-+-+...||.+
T Consensus 121 D~~T~dll~~~l~~~Ek~~ 139 (152)
T 3kwo_A 121 DTTTAAFAQENIAKYEKSL 139 (152)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 6688888888888888753
No 5
>4eve_A Neutrophil-activating protein; dodecamer, four-helix bundle, metal transport; 2.10A {Helicobacter pylori} PDB: 4evd_A 3t9j_A 3ta8_A 4evb_A 4evc_A 1ji4_A
Probab=50.54 E-value=40 Score=26.17 Aligned_cols=89 Identities=12% Similarity=0.059 Sum_probs=54.9
Q ss_pred HHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCC
Q 029312 10 KKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLI 89 (195)
Q Consensus 10 qkkF~~~l~~lkk~ki~id~~D~aAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~dvR~yL~~~~EiR~~~Gl~ 89 (195)
...+..+.+-++.+.-+ .|+.+..+.+++..-. ...|-.++.+-|...++.+..-+...|.-...+.+ .
T Consensus 68 ~~~~D~lAERI~~LGg~-P~~t~~~~~~~s~i~e---~~~~~~~~~eml~~ll~~~~~~i~~~r~~i~~aee-------~ 136 (164)
T 4eve_A 68 ADMFDDLAERIVQLGHH-PLVTLSEAIKLTRVKE---ETKTSFHSKDIFKEILEDYKHLEKEFKELSNTAEK-------E 136 (164)
T ss_dssp HHHHHHHHHHHHHTTCC-CCCCHHHHHHHCCSCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------T
T ss_pred HHHHHHHHHHHHHcCCC-CCCCHHHHHHHcCCCc---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------C
Confidence 33334444445555554 2677777766653221 12343378888888888776666666655554444 3
Q ss_pred chhhHHHHHHHHHHHHHHhh
Q 029312 90 DEHGAEAMMMDALEKVEKEI 109 (195)
Q Consensus 90 D~~g~~a~mm~ALdkvEK~i 109 (195)
.+.++..+|.+-+...||.+
T Consensus 137 ~D~~T~dll~~il~~~Ek~~ 156 (164)
T 4eve_A 137 GDKVTVTYADDQLAKLQKSI 156 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888864
No 6
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=47.51 E-value=49 Score=24.51 Aligned_cols=63 Identities=10% Similarity=0.128 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccccCCCCHHHHH--------------HHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 029312 2 LKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVS--------------QYANVMKTVREKADLFSESQRIAYTIET 64 (195)
Q Consensus 2 vK~vF~~vqkkF~~~l~~lkk~ki~id~~D~aAV~--------------~YA~~~~~ir~k~gl~s~~e~I~~tie~ 64 (195)
|-.++.++..-++.+++.+..+.--|..+|..++. +++..+..+...+|+|++...+...+..
T Consensus 8 L~~~L~~~~~~l~~L~~lL~~E~~~L~~~d~~~L~~i~~~k~~ll~~L~~~~~~R~~~l~~lg~~~~~~~~~~l~~~ 84 (157)
T 2fup_A 8 LLDLFAEDIGHANQLLQLVDEEFQALERRELPVLQQLLGAKQPLMQQLERNGRARAEILREAGVSLDREGLARYARE 84 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHhc
Confidence 45677888888999999998888888888876554 5566666667778988887777665443
No 7
>3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, STRU genomics, center for structural genomics of infectious DISE; 1.67A {Vibrio cholerae o1 biovar el tor}
Probab=45.72 E-value=57 Score=24.84 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=53.4
Q ss_pred HHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCCchh
Q 029312 13 FETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEH 92 (195)
Q Consensus 13 F~~~l~~lkk~ki~id~~D~aAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~dvR~yL~~~~EiR~~~Gl~D~~ 92 (195)
+..+.+-++.+.-+ .++.+..+.+++.. .+.-|-+++.+-|...++.+..-+...|.-...+.+ ..+.
T Consensus 67 ~D~lAERI~~LGg~-P~~t~~~~~~~s~i----~e~~~~~~~~eml~~ll~~~~~~i~~~r~~i~~ae~-------~~D~ 134 (159)
T 3iq1_A 67 IDELAERILTLSAR-PMHSFSGYLKAAQI----KEHTDSIDGRSSMQGLVDGFSILLHQQRDILELAGE-------TGDE 134 (159)
T ss_dssp HHHHHHHHHHTTCC-CCCSHHHHHHHCSS----CCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTCH
T ss_pred HHHHHHHHHHcCCC-CCCCHHHHHHHCCC----CccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------cCCH
Confidence 33333334444443 26666666665432 222366788888888888777666666665555544 3456
Q ss_pred hHHHHHHHHHHHHHHhh
Q 029312 93 GAEAMMMDALEKVEKEI 109 (195)
Q Consensus 93 g~~a~mm~ALdkvEK~i 109 (195)
++..+|-+-+...||.+
T Consensus 135 ~T~dll~~~l~~~Ek~~ 151 (159)
T 3iq1_A 135 GTSALMSDYIREQEKLV 151 (159)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888888888888764
No 8
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=42.39 E-value=68 Score=24.11 Aligned_cols=62 Identities=13% Similarity=0.043 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhccccccCC-CCHHHHHH--------------HHHHHHHHHHhcCCCChHHHHHHHHH
Q 029312 2 LKNIFLDVKKKFETALGVLRKEKITIAP-EDPAAVSQ--------------YANVMKTVREKADLFSESQRIAYTIE 63 (195)
Q Consensus 2 vK~vF~~vqkkF~~~l~~lkk~ki~id~-~D~aAV~~--------------YA~~~~~ir~k~gl~s~~e~I~~tie 63 (195)
|..+..++..-++.+.+.+..+.--|.. +|+.++.. +...+..+...+|+|++..-+...+.
T Consensus 9 L~~~L~~~~~~l~~L~~lL~~E~~~L~~~~d~~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~~~~~g~~~~~~ 85 (154)
T 3opc_A 9 LKSCLERENALVVEFLHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDALLSGAGLASGPAGTDAAAA 85 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 4567778888888888888888877767 88776544 44555566667899998887766654
No 9
>1o9r_A Agrobacterium tumefaciens DPS; iron-binding protein, DNA protection from oxidative damage, DNA-binding, iron- binding protein; 1.45A {Agrobacterium tumefaciens} SCOP: a.25.1.1 PDB: 3ge4_A*
Probab=39.27 E-value=62 Score=24.64 Aligned_cols=87 Identities=15% Similarity=0.102 Sum_probs=54.4
Q ss_pred HHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHH-hcCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCC
Q 029312 11 KKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVRE-KADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLI 89 (195)
Q Consensus 11 kkF~~~l~~lkk~ki~id~~D~aAV~~YA~~~~~ir~-k~gl~s~~e~I~~tie~~~~~~~dvR~yL~~~~EiR~~~Gl~ 89 (195)
..+..+.+-+..+.-+ .|+.++.+.+++.. .+ ..|-+++.+-+...++.+..-+...|.-...+.+ .
T Consensus 64 ~~aD~lAERI~~LGg~-P~~~~~~~~~~s~i----~e~~~~~~~~~eml~~~l~~~~~~i~~~r~~i~~a~~-------~ 131 (162)
T 1o9r_A 64 NHGDTIAERVVQLGGT-ALGSLQAVSSTTKL----KAYPTDIYKIHDHLDALIERYGEVANMIRKAIDDSDE-------A 131 (162)
T ss_dssp HHHHHHHHHHHHTTCC-CCCSHHHHHHHCCS----CCCCSSCCBHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------T
T ss_pred HHHHHHHHHHHHcCCC-CCCCHHHHHhHCCC----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------C
Confidence 3333344445544444 26677666665422 11 3455678888888888877766666665555554 3
Q ss_pred chhhHHHHHHHHHHHHHHhh
Q 029312 90 DEHGAEAMMMDALEKVEKEI 109 (195)
Q Consensus 90 D~~g~~a~mm~ALdkvEK~i 109 (195)
.+.++..++-+-+...||.+
T Consensus 132 ~D~~T~dll~~il~~~Ek~~ 151 (162)
T 1o9r_A 132 GDPTTADIFTAASRDLDKSL 151 (162)
T ss_dssp TCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 36778888888888888764
No 10
>4hrt_B Hemoglobin B chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_B*
Probab=39.14 E-value=96 Score=23.08 Aligned_cols=88 Identities=11% Similarity=0.130 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCCchhhHH------HHHHHHHHHHHHhhCCccccccHhhHHHHHHHH
Q 029312 55 SQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAE------AMMMDALEKVEKEIKKPLMRNDKKGMALLTAEF 128 (195)
Q Consensus 55 ~e~I~~tie~~~~~~~dvR~yL~~~~EiR~~~Gl~D~~g~~------a~mm~ALdkvEK~igkpL~r~DkkGM~ll~ae~ 128 (195)
++--......++..-|+.|+|+...+ ++....+.. ..+|.||+.+=+.+ +|...+.-+.+.+
T Consensus 33 ~~~g~~~y~rlF~~~P~~k~~F~~f~------~~~~~~~~~~~~~h~~~v~~al~~~v~~l------dd~~~l~~~l~~L 100 (152)
T 4hrt_B 33 EGTGLMLMANLFKTSPSAKGKFARLG------DVSAGKDNSKLRGHSITLMYALQNFVDAL------DDVERLKCVVEKF 100 (152)
T ss_dssp HHHHHHHHHHHHHHCTHHHHHTGGGC------CCC---CCHHHHHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHhHHHhhHHhC------CCCccccCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHH
Confidence 34445556668888999999887542 332211211 13778888776655 4555666666666
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHH
Q 029312 129 DKINKKLGIRKEDLPKYEEQLELKIA 154 (195)
Q Consensus 129 ~ki~kklGi~~eDl~K~~ee~el~~a 154 (195)
..--.++||+|+.++-+.+-+.--++
T Consensus 101 ~~~H~~~gV~p~~f~~~~~~Ll~~l~ 126 (152)
T 4hrt_B 101 AVNHINRQISADEFGEIVGPLRQTLK 126 (152)
T ss_dssp HHHHHC-CCCHHHHGGGHHHHHHHHH
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHH
Confidence 66666779999999888765544443
No 11
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=37.04 E-value=32 Score=26.47 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHh------------cCCCChHHHHH
Q 029312 28 APEDPAAVSQYANVMKTVREK------------ADLFSESQRIA 59 (195)
Q Consensus 28 d~~D~aAV~~YA~~~~~ir~k------------~gl~s~~e~I~ 59 (195)
++-|+++|.++++.+..++.+ ..+.+|+|+-+
T Consensus 71 ~~fDeaav~al~~~~~~~~~e~~~~~~~~~~~~~~vLTPEQr~q 114 (138)
T 3oeo_A 71 DTFDKVKAEAQIAKMEEQRKANMLAHMETQNKIYNILTPEQKKQ 114 (138)
T ss_dssp SSCCHHHHHHHHGGGSHHHHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 567999999998877665544 68889998754
No 12
>4hrt_A Globin-2 A chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_A*
Probab=35.51 E-value=62 Score=24.18 Aligned_cols=88 Identities=13% Similarity=0.155 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCCchhhH------HHHHHHHHHHHHHhhCCccccccHhhHHHHHHHH
Q 029312 55 SQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGA------EAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEF 128 (195)
Q Consensus 55 ~e~I~~tie~~~~~~~dvR~yL~~~~EiR~~~Gl~D~~g~------~a~mm~ALdkvEK~igkpL~r~DkkGM~ll~ae~ 128 (195)
.+--......++..-|+.|+|+...+ ++...++. -..+|.||+.+=+.+ +|...+..+...+
T Consensus 31 ~~~g~~~~~rlF~~~P~~k~~F~~~~------~~~~~~~~~~~~~H~~~v~~al~~~v~~l------dd~~~L~~~l~~l 98 (150)
T 4hrt_A 31 EATGLMLMSNLFTLRPDTKTYFTRLG------DVQKGKANSKLRGHAITLTYALNNFVDSL------DDPSRLKCVVEKF 98 (150)
T ss_dssp HHHHHHHHHHHHHHCGGGGGGGGGGC------CGGGGGGSHHHHHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHcC------CCCccccCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHH
Confidence 44445566678888999999987642 23221111 134788888887776 3444555555555
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHH
Q 029312 129 DKINKKLGIRKEDLPKYEEQLELKIA 154 (195)
Q Consensus 129 ~ki~kklGi~~eDl~K~~ee~el~~a 154 (195)
+.--.++|++|+.++-+.+-+.--++
T Consensus 99 ~~~H~~~gV~p~~f~~~~~~Ll~~l~ 124 (150)
T 4hrt_A 99 AVNHINRKISGDAFGAIVEPMKETLK 124 (150)
T ss_dssp HHHHHHTTCCHHHHGGGHHHHHHHHH
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 55555569999999888766554443
No 13
>2fjc_A Antigen TPF1; mini ferritin, iron binding protein, metal transport; 2.50A {Treponema pallidum} SCOP: a.25.1.1
Probab=34.92 E-value=64 Score=24.44 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=50.9
Q ss_pred HHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCCc
Q 029312 11 KKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLID 90 (195)
Q Consensus 11 kkF~~~l~~lkk~ki~id~~D~aAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~dvR~yL~~~~EiR~~~Gl~D 90 (195)
..+..+.+-+..+.-. .|+.+..+.+++..-. ...|.+++.+.+...++.+..-+...|.-...+.+ ..
T Consensus 60 ~~aD~lAERI~~LGg~-P~~~~~~~~~~s~i~e---~~~~~~~~~eml~~~l~~~~~~i~~~r~~i~~a~~-------~~ 128 (156)
T 2fjc_A 60 EAFDTIAERLLQLGAQ-APASMAEYLALSGIAE---ETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAE-------SG 128 (156)
T ss_dssp HHHHHHHHHHHHTTCC-CCCSHHHHHHHCCSCC---CCCCSEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TT
T ss_pred HHHHHHHHHHHHcCCC-CCCCHHHHHhhCCCCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------CC
Confidence 3334444444444444 2566666665542221 12333567777777777776655555555444444 44
Q ss_pred hhhHHHHHHHHHHHHHHhh
Q 029312 91 EHGAEAMMMDALEKVEKEI 109 (195)
Q Consensus 91 ~~g~~a~mm~ALdkvEK~i 109 (195)
+.++..+|-+-+...||.+
T Consensus 129 D~~T~dll~~il~~~Ek~~ 147 (156)
T 2fjc_A 129 DAVTDGIITDILRTLGKAI 147 (156)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888764
No 14
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=34.49 E-value=70 Score=27.82 Aligned_cols=64 Identities=13% Similarity=0.180 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHh---hhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHHHHhhcC
Q 029312 4 NIFLDVKKKFETALG---VLRKEKITIAPEDPAAVSQYANVMKTVREKADLFS---------ESQRIAYTIETRTAG 68 (195)
Q Consensus 4 ~vF~~vqkkF~~~l~---~lkk~ki~id~~D~aAV~~YA~~~~~ir~k~gl~s---------~~e~I~~tie~~~~~ 68 (195)
.+-.++++...++-. ..+++-+.+.++||+... |.......-+++||.| .++.+...|+.+-.+
T Consensus 16 ~i~~~~~~~v~~l~~~~~~~P~Lavilvg~dpaS~~-Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d 91 (286)
T 4a5o_A 16 NLRQQIAQRVTERRQQGLRVPGLAVILVGTDPASQV-YVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDD 91 (286)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEEESCCHHHHH-HHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEeCCCHHHHH-HHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 444556666555542 236677888899998765 9999999999999954 356788888877665
No 15
>3r8n_J 30S ribosomal protein S10; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_J 3fih_J* 3j18_J* 2wwl_J 3oar_J 3oaq_J 3ofb_J 3ofa_J 3ofp_J 3ofx_J 3ofy_J 3ofo_J 3r8o_J 4a2i_J 4gd1_J 4gd2_J 3i1m_J 1p6g_J 1p87_J* 1vs7_J* ...
Probab=34.01 E-value=34 Score=24.89 Aligned_cols=32 Identities=9% Similarity=0.101 Sum_probs=28.3
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 029312 22 KEKITIAPEDPAAVSQYANVMKTVREKADLFS 53 (195)
Q Consensus 22 k~ki~id~~D~aAV~~YA~~~~~ir~k~gl~s 53 (195)
+++|.|.+.|.+.+..|++....+.+..|+.-
T Consensus 1 ~irI~L~s~d~~~Ld~~~~~i~~~ak~~g~~v 32 (98)
T 3r8n_J 1 RIRIRLKAFDHRLIDQATAEIVETAKRTGAQV 32 (98)
T ss_dssp CBCCEEEBSCHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHhCCee
Confidence 46788889999999999999999999988753
No 16
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=32.74 E-value=59 Score=28.13 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCCh---------HHHHHHHHHHhhcC
Q 029312 3 KNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSE---------SQRIAYTIETRTAG 68 (195)
Q Consensus 3 K~vF~~vqkkF~~~l~~lkk~ki~id~~D~aAV~~YA~~~~~ir~k~gl~s~---------~e~I~~tie~~~~~ 68 (195)
+.+-.+++++..++ +..+++-+.+.++||+. .-|........+++|| |. ++.+...|+.+-.+
T Consensus 11 ~~i~~~~~~~v~~l-~~~P~Lavilvg~dpaS-~~Yv~~k~k~~~~~Gi-~~~~~lp~~~s~~ell~~I~~lN~D 82 (276)
T 3ngx_A 11 EKKAENLHGIIERS-GLEPSLKLIQIGDNEAA-SIYARAKIRRGKKIGI-AVDLEKYDDISMKDLLKRIDDLAKD 82 (276)
T ss_dssp HHHHHHHHHHHHHT-TCCCEEEEEEESCCHHH-HHHHHHHHHHHHHHTC-EEEEEEESSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh-CCCCcEEEEEeCCCHHH-HHHHHHHHHHHHHCCe-EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34556677776666 77788888888888865 5699888899999999 64 56777777776554
No 17
>1gcv_B Hemoglobin; oxygen storage/transport complex; HET: HEM; 2.00A {Mustelus griseus} SCOP: a.1.1.2 PDB: 1gcw_B*
Probab=31.92 E-value=1e+02 Score=22.85 Aligned_cols=87 Identities=11% Similarity=0.164 Sum_probs=55.4
Q ss_pred ChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHhhCCccccccHhhHHHHHHHHHHHH
Q 029312 53 SESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKIN 132 (195)
Q Consensus 53 s~~e~I~~tie~~~~~~~dvR~yL~~~~EiR~~~Gl~D~~g~~a~mm~ALdkvEK~igkpL~r~DkkGM~ll~ae~~ki~ 132 (195)
..++--...+..++..-|+.++|+...+ ++....-.. .+|.||+.+=+.+.. +.-..+.+...-
T Consensus 19 ~~~~~g~~~~~rlF~~~P~~k~~F~~f~------d~~~~~h~~-~v~~al~~~v~~ld~---------l~~~l~~L~~~H 82 (136)
T 1gcv_B 19 DMKTVVTQALDRMFKVYPWTNRYFQKRT------DFRSSIHAG-IVVGALQDAVKHMDD---------VKTLFKDLSKKH 82 (136)
T ss_dssp CHHHHHHHHHHHHHHHSGGGGGGTTTCT------TCCHHHHHH-HHHHHHHHHHHTTTC---------HHHHTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHChHHHHHhhccc------CCCccHHHH-HHHHHHHHHHHhHhh---------HHHHHHHHHHHh
Confidence 3445555666778888899999987532 221112223 378888887776653 344455555555
Q ss_pred H-HhCCCCCChhhHHHHHHHHHHH
Q 029312 133 K-KLGIRKEDLPKYEEQLELKIAK 155 (195)
Q Consensus 133 k-klGi~~eDl~K~~ee~el~~aK 155 (195)
. ++|++|+.++-+-+-+.--++.
T Consensus 83 ~~k~~V~p~~f~~~~~~Ll~~l~~ 106 (136)
T 1gcv_B 83 ADDLHVDPGSFHLLTDCIIVELAY 106 (136)
T ss_dssp HHTTCCCGGGHHHHHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHH
Confidence 5 3999999999887766655543
No 18
>3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis}
Probab=30.81 E-value=2.4e+02 Score=23.67 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH-hhcCCCcHHHHHHHHHHH
Q 029312 30 EDPAAVSQYANVMKTVREKADLFSESQRIAYTIET-RTAGIPDARTYLLTLKEI 82 (195)
Q Consensus 30 ~D~aAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~-~~~~~~dvR~yL~~~~Ei 82 (195)
.+++++..|-+.+.+ +-....++++.-+...|.+ .++...+.|++...+.++
T Consensus 275 ~~~~~l~~~y~~l~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (331)
T 3gff_A 275 FSKQQVIDQYGVLSE-RFGHKVTPSQQYLEQLIQYSDRQQLTERKQMLEGLRQH 327 (331)
T ss_dssp CCHHHHHHHHHHHHH-HHTSCCCCCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH-HhCCCCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 345555555555444 5666678888888888888 788899999988877763
No 19
>2bk6_A Non-heme iron-containing ferritin; DPS (DNA binding protein from starved cells), ferroxidase center, mutagenesis study; 2.19A {Listeria innocua} SCOP: a.25.1.1 PDB: 1qgh_A 2bjy_A 2iy4_A 2bkc_A
Probab=30.47 E-value=97 Score=23.35 Aligned_cols=88 Identities=9% Similarity=-0.017 Sum_probs=52.0
Q ss_pred HHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCC
Q 029312 11 KKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLF-SESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLI 89 (195)
Q Consensus 11 kkF~~~l~~lkk~ki~id~~D~aAV~~YA~~~~~ir~k~gl~-s~~e~I~~tie~~~~~~~dvR~yL~~~~EiR~~~Gl~ 89 (195)
..+..+.+-+..+.-. .|+.+..+.+++..-. ...|-+ ++.+.+...++.+..-+...|.-...+.+ .
T Consensus 55 ~~~D~lAERI~~Lgg~-P~~~~~~~~~~s~l~e---~~~~~~~~~~eml~~~l~~~~~~i~~~r~~i~~a~~-------~ 123 (156)
T 2bk6_A 55 EQMDEVAERLLAIGGS-PFSTLKEFLENASVEE---APYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDK-------E 123 (156)
T ss_dssp HHHHHHHHHHHHTTCC-CCCSHHHHHHHCCSCC---CCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
T ss_pred HHHHHHHHHHHHCCCC-CCCCHHHHHhHCCCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------C
Confidence 3444444445555444 2667777666643221 134444 77788888888776666555554444444 2
Q ss_pred chhhHHHHHHHHHHHHHHhh
Q 029312 90 DEHGAEAMMMDALEKVEKEI 109 (195)
Q Consensus 90 D~~g~~a~mm~ALdkvEK~i 109 (195)
.+.++..++-+-+...||.+
T Consensus 124 ~D~~T~dll~~il~~~Ek~~ 143 (156)
T 2bk6_A 124 GDDVTNDMLIAFKASIDKHI 143 (156)
T ss_dssp TCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 45677777778888877754
No 20
>1zs3_A Lactococcus lactis Mg1363 DPSA; oxidative stress, DNA binding, lactic acid bacteria, DNA binding protein; 2.70A {Lactococcus lactis} SCOP: a.25.1.1
Probab=29.79 E-value=1e+02 Score=24.68 Aligned_cols=93 Identities=10% Similarity=0.025 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhhhccccccCCCCHHHHHHH-HHHHHHHHHhcC-CCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 029312 6 FLDVKKKFETALGVLRKEKITIAPEDPAAVSQY-ANVMKTVREKAD-LFSESQRIAYTIETRTAGIPDARTYLLTLKEIR 83 (195)
Q Consensus 6 F~~vqkkF~~~l~~lkk~ki~id~~D~aAV~~Y-A~~~~~ir~k~g-l~s~~e~I~~tie~~~~~~~dvR~yL~~~~EiR 83 (195)
+.++...+..+=+-++.+.-+ .|+.++.+.++ +..-. ...| .++..+.|...++.+..-+..+|.-...+.+
T Consensus 65 y~~~~~~~D~iAERi~~LG~~-p~~t~~e~~~~~s~i~e---~~~~~~~~~~e~l~~L~~d~~~~~~~~r~~i~~A~e-- 138 (182)
T 1zs3_A 65 AQREVEYFFKISDLLLDENEI-VPSTTEEFLKYHKFITE---DPKAKYWTDEDLLESFIVDFQAQNMFITRAIKLANK-- 138 (182)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-CCCSHHHHHHHCCSCCC---CGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHhcCcCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 344445555555557777666 37888777776 54322 1223 3577777777777654433333332222222
Q ss_pred HHcCCCchhhHHHHHHHHHHHHHHhh
Q 029312 84 ERRGLIDEHGAEAMMMDALEKVEKEI 109 (195)
Q Consensus 84 ~~~Gl~D~~g~~a~mm~ALdkvEK~i 109 (195)
..+.++..+|-+-+...||.+
T Consensus 139 -----~~D~~Tadll~~~~~~~EK~~ 159 (182)
T 1zs3_A 139 -----EEKFALAAGVVELYGYNLQVI 159 (182)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCHhHHHHHHHHHHHHHHHH
Confidence 346788888889999999864
No 21
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=29.53 E-value=28 Score=26.07 Aligned_cols=36 Identities=8% Similarity=0.206 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhhhhccccccCC--CCHHHHHHHHHH
Q 029312 6 FLDVKKKFETALGVLRKEKITIAP--EDPAAVSQYANV 41 (195)
Q Consensus 6 F~~vqkkF~~~l~~lkk~ki~id~--~D~aAV~~YA~~ 41 (195)
+.++++.|...=..+.=+.|.+|| +.|+.+++|+..
T Consensus 55 l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~y~~~ 92 (170)
T 4hde_A 55 MAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQK 92 (170)
T ss_dssp HHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTT
T ss_pred HHHHHHhhhcccccceeEeeecCcccccHHHHHHHHHH
Confidence 445566655432234456788898 479999999753
No 22
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=28.53 E-value=2e+02 Score=22.17 Aligned_cols=37 Identities=19% Similarity=0.304 Sum_probs=28.0
Q ss_pred cccHhhHHHHHHHHHHH---HHHhCCCCCChhhHHHHHHH
Q 029312 115 RNDKKGMALLTAEFDKI---NKKLGIRKEDLPKYEEQLEL 151 (195)
Q Consensus 115 r~DkkGM~ll~ae~~ki---~kklGi~~eDl~K~~ee~el 151 (195)
-.|..-..-+...+..| .+|||..++++..|.+++.-
T Consensus 118 e~DP~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~~~~~ 157 (175)
T 4abx_A 118 AADPEALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAAE 157 (175)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45777677777766654 57999999999998877643
No 23
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=28.44 E-value=1.7e+02 Score=22.50 Aligned_cols=76 Identities=16% Similarity=0.358 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHHHHHhhCCccccccHhhHHHHHHHHHHHHHHhCCCCCChhhH---HHHHHHHHHHHHHHHHHHHHHHH
Q 029312 92 HGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKY---EEQLELKIAKAQLEELKKDALEA 168 (195)
Q Consensus 92 ~g~~a~mm~ALdkvEK~igkpL~r~DkkGM~ll~ae~~ki~kklGi~~eDl~K~---~ee~el~~aK~~L~elk~~a~e~ 168 (195)
-|...++|.-|.++++++.. =+.-...-..++..+.+.++-+|.|.-|- .-+.+...+.+-|.+||..-.++
T Consensus 27 ~~~~~~tM~~ieeLQ~Ei~~-----~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 27 QGIDPFTMSTLQELQENITA-----HEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp CCCCSHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778999999999998742 23333344556788899999999997763 45677888899999999988777
Q ss_pred HHHH
Q 029312 169 METQ 172 (195)
Q Consensus 169 m~~~ 172 (195)
..+.
T Consensus 102 va~g 105 (107)
T 2k48_A 102 VAAQ 105 (107)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 24
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=27.23 E-value=36 Score=26.33 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHhhcCCCc-HHHHHHHHHHHHHHcCC
Q 029312 54 ESQRIAYTIETRTAGIPD-ARTYLLTLKEIRERRGL 88 (195)
Q Consensus 54 ~~e~I~~tie~~~~~~~d-vR~yL~~~~EiR~~~Gl 88 (195)
...|+...|..-...... -..|+..+.-.|...|+
T Consensus 63 lAVR~lE~iK~K~~~~~~iY~~~lqElkPtl~ELGI 98 (109)
T 1v54_E 63 SAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGI 98 (109)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHhhHHHHhCC
Confidence 344444444442222222 23334444444444444
No 25
>1zuj_A Hypothetical protein llacc01001955; oxidative stress, DPS, DNA binding, lactic acid bacteria, DN protein; 2.90A {Lactococcus lactis} SCOP: a.25.1.1
Probab=26.72 E-value=99 Score=24.70 Aligned_cols=90 Identities=12% Similarity=-0.005 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhhhhccccccCCCCHHHHHHH-HHHHHHHHHhcC-CCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 029312 6 FLDVKKKFETALGVLRKEKITIAPEDPAAVSQY-ANVMKTVREKAD-LFSESQRIAYTIETRTAGIPDARTYLLTLKEIR 83 (195)
Q Consensus 6 F~~vqkkF~~~l~~lkk~ki~id~~D~aAV~~Y-A~~~~~ir~k~g-l~s~~e~I~~tie~~~~~~~dvR~yL~~~~EiR 83 (195)
+.++...+..+=+-++.+.-+ .|+.++.+.++ +..-. ...| .++..+.|...++.+..- +..+|
T Consensus 64 y~~~~~~~D~iAERi~~LG~~-p~~t~~e~~~~~s~i~e---~~~~~~~~~~e~l~~l~~d~~~~----------~~~~r 129 (179)
T 1zuj_A 64 ALKEDEWFYLISEQLLDENEL-VPTTLDEFVSNHKFIEN---DPKAKYWTDEALIENFINDFQNQ----------NLFIG 129 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-CCCSHHHHHHHCCSCCC---CTTGGGSCHHHHHHHHHHHHHHH----------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHhcCcCCC---CCCCCCCCHHHHHHHHHHHHHHH----------HHHHH
Confidence 344444455555556777666 37887777776 53322 1223 357777777777665433 33344
Q ss_pred HHcCC---CchhhHHHHHHHHHHHHHHhh
Q 029312 84 ERRGL---IDEHGAEAMMMDALEKVEKEI 109 (195)
Q Consensus 84 ~~~Gl---~D~~g~~a~mm~ALdkvEK~i 109 (195)
....+ ..+.++..+|-+-+...||.+
T Consensus 130 ~~i~~a~e~~D~~Tadll~~~~~~~EK~~ 158 (179)
T 1zuj_A 130 RAIKLAQKEEKFSLELAIRKLYGYNLSII 158 (179)
T ss_dssp HHTHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 44433 346688888889999999864
No 26
>2o8s_A AGR_C_984P; all alpha-helical protein, structural genomics, PSI-2, prote structure initiative; 2.40A {Agrobacterium tumefaciens} SCOP: a.295.1.1
Probab=26.04 E-value=53 Score=29.43 Aligned_cols=59 Identities=17% Similarity=0.166 Sum_probs=42.0
Q ss_pred HHHHHhcCCCChHHHHHHHHHHhhcCCCcHHH---------HHHHHHHHHHHcCCCchhhHHHHHHHHHHH
Q 029312 43 KTVREKADLFSESQRIAYTIETRTAGIPDART---------YLLTLKEIRERRGLIDEHGAEAMMMDALEK 104 (195)
Q Consensus 43 ~~ir~k~gl~s~~e~I~~tie~~~~~~~dvR~---------yL~~~~EiR~~~Gl~D~~g~~a~mm~ALdk 104 (195)
.+.-+.+...+-+..|....+|+++.|.+|.+ -|..+-. .+||+|+..+++.|...|+.
T Consensus 66 ~t~~~~~~~~a~~p~v~Re~~Yf~enIg~V~SvDDLL~D~RLl~~AL~---AfGLed~~~akaflkKVLes 133 (323)
T 2o8s_A 66 QDIGKSLERVSKQPDVARETEYYREKIGSVKSIDDFMADTRLYNYALK---AHGLEDMAYAKAFIRKVLTE 133 (323)
T ss_dssp HTHHHHHHHHTTSHHHHHHHHHHHHHGGGCCSHHHHHTCHHHHHHHHH---HTTGGGSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcCCCCCHHHHhccHHHHHHHHH---hcCCchhhchHHHHHHHHhc
Confidence 33344444555667788888888877766533 3444555 89999999999999999864
No 27
>2chp_A MRGA, metalloregulation DNA-binding stress protein; DNA-binding protein, DPS, dodecameric, ferritin; 2.0A {Bacillus subtilis}
Probab=25.91 E-value=1.6e+02 Score=22.15 Aligned_cols=87 Identities=11% Similarity=0.120 Sum_probs=49.2
Q ss_pred HHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCCc
Q 029312 11 KKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLID 90 (195)
Q Consensus 11 kkF~~~l~~lkk~ki~id~~D~aAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~dvR~yL~~~~EiR~~~Gl~D 90 (195)
..+..+.+-+..+.-+ .|+.+..+.+++..-. ...|- ++.+-+...++.+..-+...|.-...+.+ ..
T Consensus 59 ~~~D~lAERI~~LGg~-P~~~~~~~~~~s~i~e---~~~~~-~~~eml~~~l~~~~~~i~~~r~~i~~a~~-------~~ 126 (153)
T 2chp_A 59 ETVDTIAERLLAIGGQ-PVATVKEYTEHASITD---GGNET-SASEMVQALVNDYKQISSESKFVIGLAEE-------NQ 126 (153)
T ss_dssp HHHHHHHHHHHHTTCC-CCCSHHHHHHHCSSCS---CCCCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TT
T ss_pred HHHHHHHHHHHHCCCC-CCCCHHHHHhHCCCCC---CCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------CC
Confidence 3333444444544444 2667776666543221 12233 67777777777666555555444433333 34
Q ss_pred hhhHHHHHHHHHHHHHHhh
Q 029312 91 EHGAEAMMMDALEKVEKEI 109 (195)
Q Consensus 91 ~~g~~a~mm~ALdkvEK~i 109 (195)
+.+...+|-+-+...||.+
T Consensus 127 D~~T~dll~~il~~~Ek~~ 145 (153)
T 2chp_A 127 DNATADLFVGLIEEVEKQV 145 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888764
No 28
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=24.54 E-value=2.8e+02 Score=22.33 Aligned_cols=39 Identities=31% Similarity=0.505 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCC
Q 029312 28 APEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIP 70 (195)
Q Consensus 28 d~~D~aAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~ 70 (195)
++-|+++|.+-++.+-++|.++- .+++..-++-..+++|
T Consensus 108 ~~~DeakI~aL~~Ei~~Lr~qL~----~~R~k~~~em~KeGip 146 (175)
T 3lay_A 108 SSPDTAKINAVAKEMESLGQKLD----EQRVKRDVAMAQAGIP 146 (175)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhCCC
Confidence 45578888888887777776652 3444444444333333
No 29
>2c2u_A DPS, DNA-binding stress response protein; DNA-binding protein, iron; 1.1A {Deinococcus radiodurans} PDB: 2c2f_A 2f7n_A
Probab=23.79 E-value=1.5e+02 Score=24.01 Aligned_cols=84 Identities=12% Similarity=0.050 Sum_probs=50.5
Q ss_pred HHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCCchhhH
Q 029312 15 TALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGA 94 (195)
Q Consensus 15 ~~l~~lkk~ki~id~~D~aAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~dvR~yL~~~~EiR~~~Gl~D~~g~ 94 (195)
.+.+-+..+.-. .++.+..+.+++..-. ...|.+++.+.|...++.+..-+...|.-...+.+ ..+.+.
T Consensus 111 ~lAERIl~LGG~-P~~t~~~~~~~s~I~e---~~~g~~~~~emL~~ll~~e~~~i~~~re~i~~aee-------~~D~~T 179 (207)
T 2c2u_A 111 EQAERLVALGGS-PLAAPADLARYSTVQV---PQETVRDARTQVADLVQDLSRVGKGYRDDSQACDE-------ANDPVT 179 (207)
T ss_dssp HHHHHHHHTTBC-CCCSHHHHHHHCSSCC---CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TTCHHH
T ss_pred HHHHHHHHcCCC-CCCCHHHHHHhCCCCC---cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCCHHH
Confidence 333334444444 2566666655532111 12245688888888888877666666665555544 446678
Q ss_pred HHHHHHHHHHHHHhh
Q 029312 95 EAMMMDALEKVEKEI 109 (195)
Q Consensus 95 ~a~mm~ALdkvEK~i 109 (195)
..+|-+-|...|+.+
T Consensus 180 ~dLl~~il~~~Ekhi 194 (207)
T 2c2u_A 180 ADMYNGYAATIDKIR 194 (207)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888887764
No 30
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=23.24 E-value=75 Score=22.59 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=6.4
Q ss_pred HHHHHHhcCCCChHHH
Q 029312 42 MKTVREKADLFSESQR 57 (195)
Q Consensus 42 ~~~ir~k~gl~s~~e~ 57 (195)
+-.-|+++||||-.+|
T Consensus 59 VaKYRe~l~Ip~s~~R 74 (76)
T 2ahq_A 59 VAKYREMLGIPSSRER 74 (76)
T ss_dssp HHHHHHHTC-------
T ss_pred HHHHHHHcCCCchhhc
Confidence 3445899999998765
No 31
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=23.13 E-value=1.5e+02 Score=18.77 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHHHHHcCCCchhhHHHH--HHHHHHHHHHhhCCccccccHhhHHHHHHHHHHHHHHhCCCCCChh
Q 029312 71 DARTYLLTLKEIRERRGLIDEHGAEAM--MMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLP 143 (195)
Q Consensus 71 dvR~yL~~~~EiR~~~Gl~D~~g~~a~--mm~ALdkvEK~igkpL~r~DkkGM~ll~ae~~ki~kklGi~~eDl~ 143 (195)
....|-..+.++|...|++-..=+... =-..+-.+|+--..| ....|..-...+.+.+|+.++++-
T Consensus 7 ~~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~-------~~~~l~~~~~~l~~~~~v~~~~l~ 74 (84)
T 2ef8_A 7 RYRCLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRL-------DALELFELLEVVASRLGLPMDILL 74 (84)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCC-------BHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCC-------CHHHHHHHHHHHccccCCCHHHHH
Confidence 446778889999999999765544332 125677777633222 355566666777788899876653
No 32
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=23.05 E-value=2.2e+02 Score=24.74 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHH---h-hhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCC---------hHHHHHHHHHHhhcC
Q 029312 4 NIFLDVKKKFETAL---G-VLRKEKITIAPEDPAAVSQYANVMKTVREKADLFS---------ESQRIAYTIETRTAG 68 (195)
Q Consensus 4 ~vF~~vqkkF~~~l---~-~lkk~ki~id~~D~aAV~~YA~~~~~ir~k~gl~s---------~~e~I~~tie~~~~~ 68 (195)
.+-.++++...++- + ..+.+-+.+.++|||.. -|.......-+++||.| .++.+...|+.+-.+
T Consensus 17 ~i~~~~~~~v~~l~~~~~~~~P~Lavilvg~dpaS~-~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d 93 (300)
T 4a26_A 17 AIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSK-KYVQLKHKAAAEVGMASFNVELPEDISQEVLEVNVEKLNND 93 (300)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCEEEEEEESCCHHHH-HHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEEeCCCHHHH-HHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 44556666655553 3 45677788888888765 58888888899999853 356788888877655
No 33
>3l4a_A Odorant binding protein (AGAP010409-PA); all alpha helix, transport protein; 1.50A {Anopheles gambiae} PDB: 3l47_A 3l4l_A 3l5g_A 3pji_A 3qme_A
Probab=22.87 E-value=1.2e+02 Score=22.88 Aligned_cols=66 Identities=8% Similarity=0.050 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHhhCCc
Q 029312 39 ANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKP 112 (195)
Q Consensus 39 A~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~dvR~yL~~~~EiR~~~Gl~D~~g~~a~mm~ALdkvEK~igkp 112 (195)
...+....++.++.|+++.|.....+..-+-+.++=|+.=+.. ++|+-|+.|..- ++.+-..+|.|
T Consensus 5 ~~i~~eC~~~~~ivs~~e~l~~~~~g~fpdD~~~kCyirCv~~---~~g~~dd~gg~~-----~d~~~~q~~~p 70 (141)
T 3l4a_A 5 ESVIESCSNAVQGAANDELKVHYRANEFPDDPVTHCFVRCIGL---ELNLYDDKYGVD-----LQANWENLGNS 70 (141)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHTTCCCSSHHHHHHHHHHHH---HTTSEETTTEEB-----HHHHHHHTTCC
T ss_pred hHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCccchHHHhHhh---hcccEeCCCCcc-----HHHHHHHHCCC
Confidence 4677888999999999998888888866677889999999988 999976665332 35555677777
No 34
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=22.82 E-value=85 Score=23.21 Aligned_cols=109 Identities=11% Similarity=0.126 Sum_probs=65.1
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCCchhh------HHHHHH
Q 029312 26 TIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHG------AEAMMM 99 (195)
Q Consensus 26 ~id~~D~aAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~dvR~yL~~~~EiR~~~Gl~D~~g------~~a~mm 99 (195)
++++.+-+.|+.--.++..- ..+--......++..-|+.|+|+...+ ++....| =-..++
T Consensus 9 ~Lt~~~~~~I~~sw~~v~~~--------~~~~g~~~~~rlF~~~P~~k~~F~~~~------~~~~~~~n~~~~~h~~~v~ 74 (146)
T 3g46_A 9 QLTADVKKDLRDSWKVIGSD--------KKGNGVALMTTLFADNQETIGYFKRLG------DVSQGMANDKLRGHSITLM 74 (146)
T ss_dssp TCCHHHHHHHHHHHHHHGGG--------HHHHHHHHHHHHHHHCGGGGGGGGGGC------CGGGGGGCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcC--------HHHHHHHHHHHHHHHCHHHHHHHHHHc------CCCCcccCHHHHHHHHHHH
Confidence 34455566666555444331 223334556668888899998887542 2322111 123377
Q ss_pred HHHHHHHHhhCCccccccHhhHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Q 029312 100 DALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIA 154 (195)
Q Consensus 100 ~ALdkvEK~igkpL~r~DkkGM~ll~ae~~ki~kklGi~~eDl~K~~ee~el~~a 154 (195)
.||+.+=+.+ +|...+.-+.+.+..--.++|++|+.++-+.+-+.--++
T Consensus 75 ~al~~~v~~l------dd~~~l~~~l~~l~~~H~~~~V~p~~f~~~~~~ll~~l~ 123 (146)
T 3g46_A 75 YALQNFIDQL------DNPDDLVCVVEKFAVNHITRKISAAEFGKINGPIKKVLA 123 (146)
T ss_dssp HHHHHHHHTT------TCHHHHHHHHHHHHHHHHHTTCCHHHHGGGHHHHHHHHH
T ss_pred HHHHHHHHHc------CCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 8888776665 454556666666666555889999999887765544443
No 35
>1xkp_A Putative membrane-bound YOP targeting protein YOP; YOPN, type III secretion, SYCN, membrane PR chaperon complex; HET: MLY; 1.70A {Yersinia pestis} SCOP: a.243.1.3 PDB: 1xl3_A*
Probab=22.28 E-value=3.5e+02 Score=22.73 Aligned_cols=84 Identities=14% Similarity=0.069 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCc----HHHHHH-----------HHHHHHHHcCCCchh-hHHHH
Q 029312 34 AVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPD----ARTYLL-----------TLKEIRERRGLIDEH-GAEAM 97 (195)
Q Consensus 34 AV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~d----vR~yL~-----------~~~EiR~~~Gl~D~~-g~~a~ 97 (195)
.|.+....+...-+..--....|+|...++.+..+... .++|+. -|.+++...|..... +.-+.
T Consensus 48 ~~~~~~e~~~~y~e~~~d~e~~qkl~~l~~~L~~~~~~~~~~L~~~l~~f~~DpSd~~laL~~ll~~~~~~p~~~~l~~~ 127 (246)
T 1xkp_A 48 RVSDVEEQVNQYLSXVPELEQXQNVSELLSLLSNSPNISLSQLXAYLEGXSEEPSEQFXMLCGLRDALXGRPELAHLSHL 127 (246)
T ss_dssp HHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHSCGGGHHHHHH
T ss_pred hhhHHHHHHHHHHHhccchhhHHHHHHHHHHHhcCCcccHHHHHHHHhccCCChHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 34444444444444444444455555555544333222 233333 377788788876544 55666
Q ss_pred HHHHHHHHHHhhCCccccccHhhH
Q 029312 98 MMDALEKVEKEIKKPLMRNDKKGM 121 (195)
Q Consensus 98 mm~ALdkvEK~igkpL~r~DkkGM 121 (195)
+.+||.++|.+-| +.=..|.
T Consensus 128 l~~aL~~l~q~~g----~~i~AGi 147 (246)
T 1xkp_A 128 VEQALVSMAEEQG----ETIVLGA 147 (246)
T ss_dssp HHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHhcC----hhhhhhh
Confidence 8899999998887 3334555
No 36
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=22.10 E-value=34 Score=27.85 Aligned_cols=21 Identities=0% Similarity=0.048 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhcCCCChHH
Q 029312 36 SQYANVMKTVREKADLFSESQ 56 (195)
Q Consensus 36 ~~YA~~~~~ir~k~gl~s~~e 56 (195)
..|-+..+-.+++||||++++
T Consensus 126 ~y~lqElkPtl~ELGI~t~Ee 146 (152)
T 2y69_E 126 PYVIQELRPTLNELGISTPEE 146 (152)
T ss_dssp HHHHHHHHHHHHHHTCCCTTT
T ss_pred HHHHHHHhhHHHHhCCCCHHH
Confidence 344445555555555555544
No 37
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=22.03 E-value=1.4e+02 Score=19.83 Aligned_cols=39 Identities=23% Similarity=0.434 Sum_probs=28.3
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029312 136 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKR 175 (195)
Q Consensus 136 Gi~~eDl~K~~ee~el~~aK~~L~elk~~a~e~m~~~kkr 175 (195)
++...|++++.++. |.--..+|..+|++.++|+...-.|
T Consensus 3 ~~~~~dle~~KqEI-L~E~RkElqK~K~EIIeAi~~El~~ 41 (45)
T 1use_A 3 SSDYSDLQRVKQEL-LEEVKKELQKVKEEIIEAFVQELRK 41 (45)
T ss_dssp CCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556788887775 4555678999999999998765443
No 38
>2yjk_A AFP, DPS; metal-binding protein, iron uptake, ferritin fold; 2.00A {Microbacterium arborescens} PDB: 2yjj_A
Probab=20.84 E-value=1.4e+02 Score=22.69 Aligned_cols=86 Identities=9% Similarity=0.056 Sum_probs=48.5
Q ss_pred HHHHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCCc
Q 029312 11 KKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLID 90 (195)
Q Consensus 11 kkF~~~l~~lkk~ki~id~~D~aAV~~YA~~~~~ir~k~gl~s~~e~I~~tie~~~~~~~dvR~yL~~~~EiR~~~Gl~D 90 (195)
..+..+.+-+..+.-+ .|+.+..+.+++ . .. ...|-+++.+.+...++.+..-+...|.-. .+.+ ..
T Consensus 67 ~~aD~lAERI~~LGg~-P~~t~~~~~~~s-i-~e--~~~~~~~~~eml~~~l~~~~~~i~~~r~~i-~a~~-------~~ 133 (161)
T 2yjk_A 67 DYADTAAERIVALGLP-IDSRVSTMAEKT-S-TA--VPAGFAQWQDEIKAIVSDIDAALVDLQAAI-DGLD-------EV 133 (161)
T ss_dssp HHHHHHHHHHHHTTCC-CCCCHHHHHHTC-C-CC--SCSSCEEHHHHHHHHHHHHHHHHHHHHHHH-HHHT-------TT
T ss_pred HHHHHHHHHHHHcCCC-CCCCHHHHHHhc-c-cc--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-------cC
Confidence 3333444445544444 266676666654 1 11 122445677777777777665555544443 2222 34
Q ss_pred hhhHHHHHHHHHHHHHHhh
Q 029312 91 EHGAEAMMMDALEKVEKEI 109 (195)
Q Consensus 91 ~~g~~a~mm~ALdkvEK~i 109 (195)
+.+...++-+-+...||.+
T Consensus 134 D~~T~dll~~il~~~Ek~~ 152 (161)
T 2yjk_A 134 DLTSQDVAIEIKRGVDKDR 152 (161)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888764
No 39
>2wlu_A DPS-like peroxide resistance protein; DNA-binding, oxidoreductase; 1.94A {Streptococcus pyogenes} PDB: 2wla_A
Probab=20.79 E-value=2e+02 Score=22.31 Aligned_cols=85 Identities=16% Similarity=0.042 Sum_probs=48.9
Q ss_pred HHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCCchh
Q 029312 14 ETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLF-SESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEH 92 (195)
Q Consensus 14 ~~~l~~lkk~ki~id~~D~aAV~~YA~~~~~ir~k~gl~-s~~e~I~~tie~~~~~~~dvR~yL~~~~EiR~~~Gl~D~~ 92 (195)
..+.+-+..+.-. .++.+..+.+++..-. ...|-+ ++.+.+...++.+..-+...|.-...+.+ ..+.
T Consensus 77 D~lAERIl~LGg~-P~~t~~~~~~~s~i~e---~~~~~~~~~~eml~~~l~~~~~~i~~~r~~i~~ae~-------~~D~ 145 (175)
T 2wlu_A 77 DEVSERLITIGGA-PYSTLAEFSKHSKLDE---AKGTYDKTVAQHLARLVEVYLYLSSLYQVGLDITDE-------EGDA 145 (175)
T ss_dssp HHHHHHHHHTTCC-CCCSHHHHHHHCSCCC---CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTCH
T ss_pred HHHHHHHHHcCCC-CCCCHHHHHHhCCCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCCH
Confidence 3333334444444 2566666665542211 134445 77788888887776655555554444443 2456
Q ss_pred hHHHHHHHHHHHHHHhh
Q 029312 93 GAEAMMMDALEKVEKEI 109 (195)
Q Consensus 93 g~~a~mm~ALdkvEK~i 109 (195)
+...++-+-+...||.+
T Consensus 146 ~T~dll~~il~~~Ek~~ 162 (175)
T 2wlu_A 146 GTNDLFTAAKTEAEKTI 162 (175)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777778888877754
No 40
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=20.56 E-value=1.3e+02 Score=22.33 Aligned_cols=27 Identities=26% Similarity=0.522 Sum_probs=19.5
Q ss_pred HHHHHHHhhhhccccccCCCCHHHHHHHHHHH
Q 029312 11 KKFETALGVLRKEKITIAPEDPAAVSQYANVM 42 (195)
Q Consensus 11 kkF~~~l~~lkk~ki~id~~D~aAV~~YA~~~ 42 (195)
+.-..+++.|++ +|.||+.++.|-.++
T Consensus 28 ~~v~~Ai~~L~~-----~PsnPa~LAeyQ~kl 54 (85)
T 2ca5_A 28 GELTLALDKLAK-----NPSNPQLLAEYQSKL 54 (85)
T ss_dssp HHHHHHHHHHHH-----CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-----CCCCHHHHHHHHHHH
Confidence 334455555653 799999999998776
No 41
>2cf7_A DPR; peroxide resistance, DPS-family, ferritin-like, ferroxidase, iron-binding; HET: EPE; 1.50A {Streptococcus suis} PDB: 2ux1_A* 2bw1_A* 1umn_A* 2v15_A* 2xjm_A* 2xjn_A* 2xjo_A* 2xkq_A*
Probab=20.31 E-value=2.1e+02 Score=21.86 Aligned_cols=85 Identities=12% Similarity=-0.003 Sum_probs=48.4
Q ss_pred HHHHHhhhhccccccCCCCHHHHHHHHHHHHHHHHhcC-C-CChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHcCCCc
Q 029312 13 FETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKAD-L-FSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLID 90 (195)
Q Consensus 13 F~~~l~~lkk~ki~id~~D~aAV~~YA~~~~~ir~k~g-l-~s~~e~I~~tie~~~~~~~dvR~yL~~~~EiR~~~Gl~D 90 (195)
+..+.+-+..+.-. .|+.+..+.+++. +.+..| - +++.+.+...++.+..-+...|.-...+.+ ..
T Consensus 66 aD~lAERIl~LGg~-P~~t~~~~~~~s~----i~e~~~~~~~~~~eml~~~l~~~~~~i~~~r~~i~~a~~-------~~ 133 (165)
T 2cf7_A 66 LAEMSERLITLGGA-PFSTLKEFSENSQ----LKEVLGDYNVTIEEQLARVVEVFRYLAALFQKGFDVSDE-------EG 133 (165)
T ss_dssp HHHHHHHHHHTTCC-CCCSHHHHHHHCS----CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HT
T ss_pred HHHHHHHHHHCCCC-CCCCHHHHHHHCC----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------CC
Confidence 33334444444444 2566666665542 222223 3 467788888877776655555554444433 34
Q ss_pred hhhHHHHHHHHHHHHHHhh
Q 029312 91 EHGAEAMMMDALEKVEKEI 109 (195)
Q Consensus 91 ~~g~~a~mm~ALdkvEK~i 109 (195)
+.+...+|.+-+...||.+
T Consensus 134 D~~T~dll~~il~~~Ek~~ 152 (165)
T 2cf7_A 134 DSVTNDIFNVAKASIEKHI 152 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 5677777778888877764
Done!