BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029313
         (195 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YR0|A Chain A, Crystal Structure Of Phosphinothricin Acetyltransferase
           From Agrobacterium Tumefaciens
 pdb|1YR0|B Chain B, Crystal Structure Of Phosphinothricin Acetyltransferase
           From Agrobacterium Tumefaciens
 pdb|1YR0|C Chain C, Crystal Structure Of Phosphinothricin Acetyltransferase
           From Agrobacterium Tumefaciens
 pdb|1YR0|D Chain D, Crystal Structure Of Phosphinothricin Acetyltransferase
           From Agrobacterium Tumefaciens
          Length = 175

 Score = 28.9 bits (63), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 15/76 (19%)

Query: 55  RGLAMVFSLLAFIVMASNRHGDWKDFDKYEEFRYVLAIAILSTLYTLGQVLRHVHELSTG 114
           RG  ++ ++L   V     +GDW+ FD Y   R         ++Y        VH+ + G
Sbjct: 53  RGFPVIVAILDGKVAGYASYGDWRAFDGYRHTRE-------HSVY--------VHKDARG 97

Query: 115 RQMMQKRTSALIDFFG 130
             + ++   ALID  G
Sbjct: 98  HGIGKRLXQALIDHAG 113


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,391,068
Number of Sequences: 62578
Number of extensions: 143771
Number of successful extensions: 167
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 1
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)