Query 029313
Match_columns 195
No_of_seqs 109 out of 462
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 10:55:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01569 A_tha_TIGR01569 plan 100.0 4.8E-35 1E-39 236.2 12.8 134 52-189 1-154 (154)
2 PF04535 DUF588: Domain of unk 100.0 1.5E-31 3.1E-36 213.6 13.2 129 47-177 3-149 (149)
3 PF01284 MARVEL: Membrane-asso 98.5 2.7E-06 5.8E-11 65.5 11.3 130 50-183 5-143 (144)
4 KOG4788 Members of chemokine-l 82.7 14 0.00031 30.2 9.2 27 48-74 35-61 (172)
5 KOG4016 Synaptic vesicle prote 51.0 1.7E+02 0.0036 25.4 9.2 131 49-188 23-169 (233)
6 PF03661 UPF0121: Uncharacteri 43.4 1.7E+02 0.0036 25.3 8.2 53 44-103 21-73 (247)
7 COG5178 PRP8 U5 snRNP spliceos 38.6 20 0.00043 38.3 2.0 14 22-35 20-33 (2365)
8 PF09788 Tmemb_55A: Transmembr 38.2 42 0.00092 29.6 3.7 65 33-109 185-249 (256)
9 KOG2662 Magnesium transporters 31.3 2.3E+02 0.005 26.8 7.5 55 48-104 346-402 (414)
10 PF03188 Cytochrom_B561: Eukar 30.4 2.4E+02 0.0051 21.2 9.1 97 46-150 33-130 (137)
11 KOG0005 Ubiquitin-like protein 27.1 21 0.00045 25.0 -0.0 13 1-13 30-42 (70)
12 TIGR03745 conj_TIGR03745 integ 26.0 3E+02 0.0064 21.1 6.1 36 52-87 46-83 (104)
13 PF07077 DUF1345: Protein of u 25.7 3.8E+02 0.0082 22.0 8.3 66 42-110 42-107 (180)
No 1
>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569. This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.
Probab=100.00 E-value=4.8e-35 Score=236.16 Aligned_cols=134 Identities=27% Similarity=0.375 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCc---------cccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccc
Q 029313 52 LALRGLAMVFSLLAFIVMASNRHGDW---------KDFDKYEEFRYVLAIAILSTLYTLGQVLRHVHELSTGRQMMQKRT 122 (195)
Q Consensus 52 l~LR~la~~~slaA~~vM~t~~qt~~---------a~f~~~~af~ylv~an~I~~~Ysllql~~~~~~l~~~~~~~~~~~ 122 (195)
++||+++++++++|+++|+||||+.+ ++|+|+++|+|+|++|+|+|+|+++|++++++++.+++.. .
T Consensus 1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~----~ 76 (154)
T TIGR01569 1 LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVF----F 76 (154)
T ss_pred CcHHHHHHHHHHHHHHHhhcccceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch----h
Confidence 47999999999999999999999863 5999999999999999999999999999999988777653 3
Q ss_pred ceeeeecchHHHHHHHHHhhhhhhHHHHHHHhCCC-----------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029313 123 SALIDFFGDQIISYLLISSASSAVPMTNRMREGAD-----------NLFTDSLAASISMQFLAFLALAFSALISGYKL 189 (195)
Q Consensus 123 ~~w~~fi~Dqv~ayLL~SaasAAa~v~~l~~~g~~-----------~~FC~~~~aSv~lsflA~l~~a~~s~lSa~~L 189 (195)
..|++|++||+++||++||++||+++++++|+|+. ++||||+++|++++|+|++++++++++|+|++
T Consensus 77 ~~~~~f~~D~v~~~Ll~sa~sAA~av~~l~~~G~~~~~W~~iC~~~~~FC~~~~~sl~~s~~a~v~~~llsv~Sa~~~ 154 (154)
T TIGR01569 77 KLIALFFLDLVMLALLSSGTSAAAAVAYVGKLGNKEAGWLKICGVFGKFCDRIAGSLALSLFAVILLVLLSILSAISL 154 (154)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 48999999999999999999999999999999863 79999999999999999999999999999985
No 2
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=99.97 E-value=1.5e-31 Score=213.63 Aligned_cols=129 Identities=37% Similarity=0.571 Sum_probs=119.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHcCCCC-------ccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Q 029313 47 LKRGSLALRGLAMVFSLLAFIVMASNRHGD-------WKDFDKYEEFRYVLAIAILSTLYTLGQVLRHVHELSTGRQMMQ 119 (195)
Q Consensus 47 l~~~~l~LR~la~~~slaA~~vM~t~~qt~-------~a~f~~~~af~ylv~an~I~~~Ysllql~~~~~~l~~~~~~~~ 119 (195)
++..+++||+++++++++|+++|++|+|+. ..+|+|+++|+|++++|+|+|+|+++|++.+++.+.+|+ .+
T Consensus 3 ~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~--~~ 80 (149)
T PF04535_consen 3 LRIASLVLRLLAFVLSLAALAVMATNKQTVSVFSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGK--LR 80 (149)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhcCCcceeeccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--Cc
Confidence 347899999999999999999999999974 279999999999999999999999999999999998887 47
Q ss_pred cccceeeeecchHHHHHHHHHhhhhhhHHHHHHHhCC-----------CchhhHHHHHHHHHHHHHHHH
Q 029313 120 KRTSALIDFFGDQIISYLLISSASSAVPMTNRMREGA-----------DNLFTDSLAASISMQFLAFLA 177 (195)
Q Consensus 120 ~~~~~w~~fi~Dqv~ayLL~SaasAAa~v~~l~~~g~-----------~~~FC~~~~aSv~lsflA~l~ 177 (195)
++...|++|++||+++||++||++||+++++++++|+ .++||+|+++|++++|+|+++
T Consensus 81 ~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~g~~~~~W~~vC~~~~~FC~~~~~sv~lsf~a~~~ 149 (149)
T PF04535_consen 81 SKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKKGNSHVQWSKVCSQFGKFCNRAAASVALSFLAFVA 149 (149)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccchhhHHHHHHHHHHHHHHHHHC
Confidence 7889999999999999999999999999999999874 379999999999999999974
No 3
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=98.48 E-value=2.7e-06 Score=65.55 Aligned_cols=130 Identities=22% Similarity=0.199 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCc-cccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccceeeee
Q 029313 50 GSLALRGLAMVFSLLAFIVMASNRHGDW-KDFDKYEEFRYVLAIAILSTLYTLGQVLRHVHELSTGRQMMQKRTSALIDF 128 (195)
Q Consensus 50 ~~l~LR~la~~~slaA~~vM~t~~qt~~-a~f~~~~af~ylv~an~I~~~Ysllql~~~~~~l~~~~~~~~~~~~~w~~f 128 (195)
...+||+++++++++.+..++....+.. ......++..|.+.+.++...|++.-++...+. . +. .++....+.++
T Consensus 5 ~~~ilR~lq~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~-~~--~~~~~~~~~~~ 80 (144)
T PF01284_consen 5 PSGILRILQLVFALIIFGLVASSIATGSQIYGGSPSACGFALFVAVLSFLYTLIFLLLYLFS-L-KY--RPRIPWPLVEF 80 (144)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH-H-hc--ccccccchhHH
Confidence 4589999999999999999999774322 344566889999999999999999988887765 1 11 13455667899
Q ss_pred cchHHHHHHHHHhhhhhhHHHHHHHh--------CCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 029313 129 FGDQIISYLLISSASSAVPMTNRMRE--------GADNLFTDSLAASISMQFLAFLALAFSAL 183 (195)
Q Consensus 129 i~Dqv~ayLL~SaasAAa~v~~l~~~--------g~~~~FC~~~~aSv~lsflA~l~~a~~s~ 183 (195)
+.|.+++.+-+.+..+-+.-....+. .+....|+...++.+++|+.++.+..+.+
T Consensus 81 ~~~~v~~il~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~~ 143 (144)
T PF01284_consen 81 IFDAVFAILWLAAFIALAAYLSDHSCSNTGNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVSAV 143 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccccCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999866655433222111 12357799999999999999999988765
No 4
>KOG4788 consensus Members of chemokine-like factor super family and related proteins [Defense mechanisms]
Probab=82.70 E-value=14 Score=30.16 Aligned_cols=27 Identities=30% Similarity=0.333 Sum_probs=21.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHcCC
Q 029313 48 KRGSLALRGLAMVFSLLAFIVMASNRH 74 (195)
Q Consensus 48 ~~~~l~LR~la~~~slaA~~vM~t~~q 74 (195)
+...=+|+++.++++++.++...+...
T Consensus 35 rt~~G~Lki~e~~l~li~fi~i~~~~~ 61 (172)
T KOG4788|consen 35 RTLLGLLKILEIVLGLIIFICIASSLA 61 (172)
T ss_pred cchHhHHHHHHHHHHHHHheeeecCcc
Confidence 344567899999999999988887653
No 5
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.05 E-value=1.7e+02 Score=25.44 Aligned_cols=131 Identities=18% Similarity=0.158 Sum_probs=80.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCCC----c---cccC-ccchHHHHHHHHHHHHHHHHHHHHHHHHH--HhhCCccc
Q 029313 49 RGSLALRGLAMVFSLLAFIVMASNRHGD----W---KDFD-KYEEFRYVLAIAILSTLYTLGQVLRHVHE--LSTGRQMM 118 (195)
Q Consensus 49 ~~~l~LR~la~~~slaA~~vM~t~~qt~----~---a~f~-~~~af~ylv~an~I~~~Ysllql~~~~~~--l~~~~~~~ 118 (195)
....++|+...+++++-+--+.+.-=.+ . =-|+ |..+=+|=+++-+.+.+=+++-++.+++- +..-|
T Consensus 23 kP~ti~R~~~~lFsliVf~si~~eGy~n~~~~~~~~Ciynrn~~ACsyg~avG~~Afla~~~flvlD~~f~qISsv~--- 99 (233)
T KOG4016|consen 23 KPQTILRVVSWLFSLIVFGSIVNEGYLNSASSGEEFCIYNRNSNACSYGVAVGVLAFLACLAFLVLDVYFPQISSVK--- 99 (233)
T ss_pred CchhHHHHHHHHHHHhheeeeccccccCcccCCceEEEECCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhcccc---
Confidence 4568999999999887666655532111 1 1233 66889999999999999999988888863 22111
Q ss_pred ccccceeeeecchHHHHHHHHHhhhhhhHHHHHHHhCCCc---h---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029313 119 QKRTSALIDFFGDQIISYLLISSASSAVPMTNRMREGADN---L---FTDSLAASISMQFLAFLALAFSALISGYK 188 (195)
Q Consensus 119 ~~~~~~w~~fi~Dqv~ayLL~SaasAAa~v~~l~~~g~~~---~---FC~~~~aSv~lsflA~l~~a~~s~lSa~~ 188 (195)
.+|.. .+.|.++..|-.--= =.+..++..+|..+ . =-+.+.++|..+|++++.-...+.+.--|
T Consensus 100 ~Rkra----Vl~Dl~~Salwtflw--fvGFc~l~nqwqvs~p~~~~~~a~saraaIafsffSilsW~~~A~lA~qR 169 (233)
T KOG4016|consen 100 DRKRA----VLADLGVSALWAFLW--FVGFCFLANQWQVSKPKENPLGAGSARAAIAFSFFSILSWGGQAVLAFQR 169 (233)
T ss_pred hhHHH----HHHHHHHHHHHHHHH--HHHHHHHHHHhhccCCCCCCcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333 455655543321100 01234555666421 1 12377889999999888888777765433
No 6
>PF03661 UPF0121: Uncharacterised protein family (UPF0121); InterPro: IPR005344 Uncharacterised integral membrane protein family.; GO: 0016021 integral to membrane
Probab=43.43 E-value=1.7e+02 Score=25.26 Aligned_cols=53 Identities=19% Similarity=0.093 Sum_probs=35.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCCccccCccchHHHHHHHHHHHHHHHHHH
Q 029313 44 EDLLKRGSLALRGLAMVFSLLAFIVMASNRHGDWKDFDKYEEFRYVLAIAILSTLYTLGQ 103 (195)
Q Consensus 44 ~~~l~~~~l~LR~la~~~slaA~~vM~t~~qt~~a~f~~~~af~ylv~an~I~~~Ysllq 103 (195)
.+-+..+-.+.|+.+++.++.-+.-....+ .....|+..+..+++.+++.+-|
T Consensus 21 ~~~lq~~~f~~~~~~l~~~~~y~l~~~~~~-------~~~~~Y~~all~~a~t~~i~l~q 73 (247)
T PF03661_consen 21 AKTLQFAWFLGHVFTLLCSLLYILPILFFS-------LAYSAYRKALLGAAATYAIVLYQ 73 (247)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhccc-------chHHHHHHHHHHHHHHHHHHHHH
Confidence 444667889999999999887665433222 01226777777777777776655
No 7
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=38.62 E-value=20 Score=38.33 Aligned_cols=14 Identities=21% Similarity=0.264 Sum_probs=8.6
Q ss_pred cccCCCCCCCCchh
Q 029313 22 DVENQTPSSGFGVA 35 (195)
Q Consensus 22 ~~~~~~~~~~~~~~ 35 (195)
|+|||.|||+-++.
T Consensus 20 pps~pppPppPg~~ 33 (2365)
T COG5178 20 PPSQPPPPPPPGVN 33 (2365)
T ss_pred CCCCCCCccCCCcc
Confidence 45666666665655
No 8
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=38.19 E-value=42 Score=29.57 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=34.9
Q ss_pred chhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCCccccCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 029313 33 GVAAITRRWKREDLLKRGSLALRGLAMVFSLLAFIVMASNRHGDWKDFDKYEEFRYVLAIAILSTLYTLGQVLRHVH 109 (195)
Q Consensus 33 ~~~~~~~r~kr~~~l~~~~l~LR~la~~~slaA~~vM~t~~qt~~a~f~~~~af~ylv~an~I~~~Ysllql~~~~~ 109 (195)
.++.+-.++.|.+. ++.=++.+++.++++.+|+..- ++.......|++.+ ...+.+++.+..++|
T Consensus 185 KvSSVG~~faRkR~-----i~f~llgllfliiaigltvGT~-----~~A~~~~giY~~wv--~~~l~a~~~~~rs~y 249 (256)
T PF09788_consen 185 KVSSVGPRFARKRA-----IIFFLLGLLFLIIAIGLTVGTW-----TYAKTYGGIYVSWV--GLFLIALICLIRSIY 249 (256)
T ss_pred eeccccchHhhhHH-----HHHHHHHHHHHHHHHHHhhhhH-----HHHhhcCcEeHHHH--HHHHHHHHHHHHhhe
Confidence 56666666656553 4555667777777777776532 11111123444433 334455666665554
No 9
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=31.34 E-value=2.3e+02 Score=26.77 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=36.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH--cCCCCccccCccchHHHHHHHHHHHHHHHHHHH
Q 029313 48 KRGSLALRGLAMVFSLLAFIVMAS--NRHGDWKDFDKYEEFRYVLAIAILSTLYTLGQV 104 (195)
Q Consensus 48 ~~~~l~LR~la~~~slaA~~vM~t--~~qt~~a~f~~~~af~ylv~an~I~~~Ysllql 104 (195)
-..++.|=..++++++.+++.-.. |-+.. -+++-..|.|++....+.|++-+.-+
T Consensus 346 iqleL~Lt~gT~~~s~~~~va~ifGMNl~~~--l~~~~~~F~~vv~~~~~~~~~lf~~i 402 (414)
T KOG2662|consen 346 IQLELLLTIGTFCLSVFSVVAGIFGMNLPSS--LEEDHYAFKWVVGITFTLCIVLFVVI 402 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccch--hccCCChhhhhHHHHHHHHHHHHHHH
Confidence 355666666666666666554433 44433 34455799999999999999877663
No 10
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=30.35 E-value=2.4e+02 Score=21.18 Aligned_cols=97 Identities=19% Similarity=0.257 Sum_probs=56.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHcCCCCc-cccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccce
Q 029313 46 LLKRGSLALRGLAMVFSLLAFIVMASNRHGDW-KDFDKYEEFRYVLAIAILSTLYTLGQVLRHVHELSTGRQMMQKRTSA 124 (195)
Q Consensus 46 ~l~~~~l~LR~la~~~slaA~~vM~t~~qt~~-a~f~~~~af~ylv~an~I~~~Ysllql~~~~~~l~~~~~~~~~~~~~ 124 (195)
........+-.+++++.++++++...+++... .+|++.-+. + -.++.+-.++|.+........++.. ++....
T Consensus 33 ~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~---l--G~~~~~l~~~Q~~~G~~~~~~~~~~-~~~r~~ 106 (137)
T PF03188_consen 33 WWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSI---L--GLATFVLALLQPLLGFFRFFMPGLP-RKRRPI 106 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhh---h--hHHHHHHHHHHHHHHHHHHccCCCc-ccHHHH
Confidence 34467788899999999999999999887642 344332222 2 2333445678888877765432221 111112
Q ss_pred eeeecchHHHHHHHHHhhhhhhHHHH
Q 029313 125 LIDFFGDQIISYLLISSASSAVPMTN 150 (195)
Q Consensus 125 w~~fi~Dqv~ayLL~SaasAAa~v~~ 150 (195)
|... -....+++...+.++...+.
T Consensus 107 ~~~~--H~~~G~~~~~l~~~~i~~G~ 130 (137)
T PF03188_consen 107 WNKW--HRWLGYLIYVLAIATIFLGL 130 (137)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 2222 66666666665555554443
No 11
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=27.08 E-value=21 Score=25.01 Aligned_cols=13 Identities=38% Similarity=0.593 Sum_probs=10.6
Q ss_pred CCCCCCCCCCccc
Q 029313 1 MEEKKGVESPQFE 13 (195)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (195)
.|||.|.||+|.|
T Consensus 30 vEEkeGIPp~qqr 42 (70)
T KOG0005|consen 30 VEEKEGIPPQQQR 42 (70)
T ss_pred hhhhcCCCchhhh
Confidence 3789999998875
No 12
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=26.01 E-value=3e+02 Score=21.11 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC--CCCccccCccchHH
Q 029313 52 LALRGLAMVFSLLAFIVMASNR--HGDWKDFDKYEEFR 87 (195)
Q Consensus 52 l~LR~la~~~slaA~~vM~t~~--qt~~a~f~~~~af~ 87 (195)
+.|=+++..|-.++-....+=+ |++-.+|.|+-++.
T Consensus 46 lgL~i~a~aFi~Va~~a~~ty~Ei~~Gk~~W~~fg~~v 83 (104)
T TIGR03745 46 LGLLIAAIAFIGVAYHALGTYHEIRTGKATWGDFGATV 83 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcchhhHHhCcchh
Confidence 3444444444444444444422 22336777766653
No 13
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=25.69 E-value=3.8e+02 Score=22.04 Aligned_cols=66 Identities=21% Similarity=0.176 Sum_probs=44.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCCccccCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029313 42 KREDLLKRGSLALRGLAMVFSLLAFIVMASNRHGDWKDFDKYEEFRYVLAIAILSTLYTLGQVLRHVHE 110 (195)
Q Consensus 42 kr~~~l~~~~l~LR~la~~~slaA~~vM~t~~qt~~a~f~~~~af~ylv~an~I~~~Ysllql~~~~~~ 110 (195)
++++.-+...+.+=+.+.+.++++++....+.++.. .......-.++...+++.|.+++..+....
T Consensus 42 ~~ed~~~~~~~~~~~~a~~asl~ai~~~l~~~~~~~---~~~~~~~~~la~~tv~~sW~~ih~~FAl~Y 107 (180)
T PF07077_consen 42 RREDEGRWVILLLVLVAAFASLVAIVLLLASAKDLS---GAAKALHIALALATVVLSWLLIHTVFALHY 107 (180)
T ss_pred HhccccchhHHHHHHHHHHHHHHHHHHHHHhCCCCC---cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544455566666666777777777777654421 123456778888899999999999998863
Done!