Query 029313
Match_columns 195
No_of_seqs 109 out of 462
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 17:49:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_J Cytochrome C oxidase po 10.4 3.2E+02 0.011 17.6 3.7 26 82-107 28-53 (59)
2 3um7_A Potassium channel subfa 7.4 2.4E+02 0.0084 24.0 2.7 8 95-102 145-152 (309)
3 2y69_J Cytochrome C oxidase po 7.2 4.9E+02 0.017 17.9 3.7 26 82-107 49-74 (80)
4 2ytu_A Friend leukemia integra 6.0 3.5E+02 0.012 20.2 2.6 14 1-14 14-27 (128)
5 1jmt_B Splicing factor U2AF 65 5.9 2E+02 0.0069 16.1 1.0 8 6-13 9-16 (28)
6 1jb0_X Photosystem I subunit P 5.8 3.3E+02 0.011 15.9 1.9 13 88-100 18-30 (35)
7 3ov5_A VIRB7 (XAC2622), unchar 5.3 2.7E+02 0.0093 19.4 1.5 20 26-45 7-26 (85)
8 2loj_A Putative cytoplasmic pr 4.3 6.3E+02 0.022 16.6 2.7 15 2-16 2-16 (63)
9 3qoe_A Heterocyst differentiat 4.1 1.8E+02 0.0061 24.5 -0.2 14 128-141 17-30 (302)
10 2knc_B Integrin beta-3; transm 4.0 7.8E+02 0.027 16.5 3.2 25 166-190 11-35 (79)
No 1
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=10.39 E-value=3.2e+02 Score=17.58 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=19.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH
Q 029313 82 KYEEFRYVLAIAILSTLYTLGQVLRH 107 (195)
Q Consensus 82 ~~~af~ylv~an~I~~~Ysllql~~~ 107 (195)
|.--|++..+..+++.+|++-.+...
T Consensus 28 d~~Ly~~t~~l~~~g~~~~~y~l~~~ 53 (59)
T 1v54_J 28 DNILYRVTMTLCLGGTLYSLYCLGWA 53 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457788888888888888877663
No 2
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=7.38 E-value=2.4e+02 Score=23.97 Aligned_cols=8 Identities=25% Similarity=0.526 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 029313 95 LSTLYTLG 102 (195)
Q Consensus 95 I~~~Ysll 102 (195)
+++.|.++
T Consensus 145 ~~i~~~l~ 152 (309)
T 3um7_A 145 FCIFYALV 152 (309)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 3
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=7.17 E-value=4.9e+02 Score=17.85 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=19.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH
Q 029313 82 KYEEFRYVLAIAILSTLYTLGQVLRH 107 (195)
Q Consensus 82 ~~~af~ylv~an~I~~~Ysllql~~~ 107 (195)
|.--|.+..+..+++.+|++-++...
T Consensus 49 d~~Ly~~t~~l~~~G~~~~ly~l~~~ 74 (80)
T 2y69_J 49 DNILYRVTMTLCLGGTLYSLYCLGWA 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557888888888888888877663
No 4
>2ytu_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=5.96 E-value=3.5e+02 Score=20.16 Aligned_cols=14 Identities=43% Similarity=0.752 Sum_probs=9.4
Q ss_pred CCCCCCCCCCcccc
Q 029313 1 MEEKKGVESPQFET 14 (195)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (195)
||||.+-++|++.+
T Consensus 14 ~~~~~~~~pp~~~~ 27 (128)
T 2ytu_A 14 MDEKNGPPPPNMTT 27 (128)
T ss_dssp CCCCCCSSSCSCCC
T ss_pred hhhccCCCCCchhh
Confidence 67887766666543
No 5
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=5.93 E-value=2e+02 Score=16.05 Aligned_cols=8 Identities=50% Similarity=0.858 Sum_probs=5.9
Q ss_pred CCCCCccc
Q 029313 6 GVESPQFE 13 (195)
Q Consensus 6 ~~~~~~~~ 13 (195)
.++|||+|
T Consensus 9 DvpP~GyE 16 (28)
T 1jmt_B 9 DVPPPGFE 16 (28)
T ss_dssp TCCCTTCT
T ss_pred CCCCCCcc
Confidence 57788875
No 6
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=5.81 E-value=3.3e+02 Score=15.87 Aligned_cols=13 Identities=38% Similarity=0.544 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHH
Q 029313 88 YVLAIAILSTLYT 100 (195)
Q Consensus 88 ylv~an~I~~~Ys 100 (195)
.++++|-++++|=
T Consensus 18 llLaINflVAayY 30 (35)
T 1jb0_X 18 LLLAINFLVAAYY 30 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5778888888874
No 7
>3ov5_A VIRB7 (XAC2622), uncharacterized protein; type IV secretion system component, bacteri membrane, xanthomonas axonopodis PV citri; 1.04A {Xanthomonas axonopodis PV}
Probab=5.33 E-value=2.7e+02 Score=19.45 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=15.7
Q ss_pred CCCCCCCchhhhhhhhhhhh
Q 029313 26 QTPSSGFGVAAITRRWKRED 45 (195)
Q Consensus 26 ~~~~~~~~~~~~~~r~kr~~ 45 (195)
|..+-|+.+-+.++||..+.
T Consensus 7 qatpmDgTlK~mLERWa~ds 26 (85)
T 3ov5_A 7 QATPMDGTLKTMLERWAADS 26 (85)
T ss_dssp ECCTTCCBHHHHHHHHHHTT
T ss_pred EeeccchHHHHHHHHHHhhc
Confidence 56667889999999996544
No 8
>2loj_A Putative cytoplasmic protein; pathogenic bacterial protein, PSI-biology, northeast structu genomics consortium (NESG); NMR {Salmonella enterica subsp}
Probab=4.29 E-value=6.3e+02 Score=16.59 Aligned_cols=15 Identities=13% Similarity=0.053 Sum_probs=6.2
Q ss_pred CCCCCCCCCcccccc
Q 029313 2 EEKKGVESPQFETRM 16 (195)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (195)
.+....++|..+++.
T Consensus 2 ~~~dn~~~~~~~~~~ 16 (63)
T 2loj_A 2 SRMDNTELPHPKEID 16 (63)
T ss_dssp CCCCCCCCCCCCCCC
T ss_pred ccccccCCCCcccCC
Confidence 333334444444443
No 9
>3qoe_A Heterocyst differentiation protein; MCSG, PSI biology, structural genomics, midwest center for S genomics, helix-turn-helix; 3.00A {Fischerella thermalis} PDB: 3qod_A
Probab=4.08 E-value=1.8e+02 Score=24.47 Aligned_cols=14 Identities=43% Similarity=0.432 Sum_probs=11.9
Q ss_pred ecchHHHHHHHHHh
Q 029313 128 FFGDQIISYLLISS 141 (195)
Q Consensus 128 fi~Dqv~ayLL~Sa 141 (195)
-.+||++.||.+||
T Consensus 17 SAmDqimlyLAFsA 30 (302)
T 3qoe_A 17 SAMDQIMLYLAFSA 30 (302)
T ss_dssp CHHHHHHHTTSHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 35899999999886
No 10
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=4.02 E-value=7.8e+02 Score=16.48 Aligned_cols=25 Identities=16% Similarity=0.095 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 029313 166 ASISMQFLAFLALAFSALISGYKLS 190 (195)
Q Consensus 166 aSv~lsflA~l~~a~~s~lSa~~L~ 190 (195)
.+++++-++.++++.+.++=.|++.
T Consensus 11 ~~Iv~gvi~gilliGllllliwk~~ 35 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIWKLL 35 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666654
Done!