Query 029313
Match_columns 195
No_of_seqs 109 out of 462
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 17:49:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029313.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029313hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0x_ f.23.20.1 (X:) Subunit 6.0 1.6E+02 0.012 14.9 1.9 13 89-101 13-25 (29)
2 d2gqba1 a.282.1.1 (A:1-130) Hy 4.4 3.7E+02 0.027 18.4 3.7 17 25-41 40-56 (130)
3 d2gyc31 a.108.1.1 (3:2-48) Rib 3.9 52 0.0038 19.2 -1.2 8 1-8 25-32 (47)
4 d1evsa_ a.26.1.1 (A:) Oncostat 3.9 4E+02 0.029 19.0 3.6 18 14-31 138-155 (184)
5 d1x4za1 b.1.2.1 (A:8-115) Brot 3.6 1.8E+02 0.013 17.9 1.3 12 12-23 4-15 (108)
6 d2r7ca2 d.216.1.1 (A:2-143) Ro 3.0 1.7E+02 0.012 20.4 0.6 9 8-16 52-60 (142)
7 d1rh5b_ f.23.28.1 (B:) Preprot 3.0 5.3E+02 0.038 15.0 3.3 17 168-184 35-51 (56)
8 g1f8v.1 b.121.4.4 (A:,D:) Alph 3.0 3E+02 0.022 22.0 2.2 18 14-31 13-30 (395)
9 d1h3ga1 b.1.18.2 (A:3-95) Cycl 2.6 1.7E+02 0.012 18.9 0.2 10 10-19 1-10 (93)
10 d1u19a_ f.13.1.2 (A:) Rhodopsi 2.5 9E+02 0.065 16.7 14.0 72 36-114 30-101 (348)
No 1
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=5.99 E-value=1.6e+02 Score=14.95 Aligned_cols=13 Identities=38% Similarity=0.595 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHH
Q 029313 89 VLAIAILSTLYTL 101 (195)
Q Consensus 89 lv~an~I~~~Ysl 101 (195)
++++|-+++.|-+
T Consensus 13 llainflvaayyf 25 (29)
T d1jb0x_ 13 LLAINFLVAAYYF 25 (29)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5667777777754
No 2
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=4.43 E-value=3.7e+02 Score=18.44 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=9.8
Q ss_pred CCCCCCCCchhhhhhhh
Q 029313 25 NQTPSSGFGVAAITRRW 41 (195)
Q Consensus 25 ~~~~~~~~~~~~~~~r~ 41 (195)
++++.+..-|.++++..
T Consensus 40 ~~~~~~~VDV~aiLd~~ 56 (130)
T d2gqba1 40 QPTAAPSIDVAPILDKA 56 (130)
T ss_dssp CCCCCSSEECHHHHHHH
T ss_pred CCCCCCcccHHHHHHHH
Confidence 34444456777777643
No 3
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=3.92 E-value=52 Score=19.18 Aligned_cols=8 Identities=75% Similarity=0.900 Sum_probs=5.1
Q ss_pred CCCCCCCC
Q 029313 1 MEEKKGVE 8 (195)
Q Consensus 1 ~~~~~~~~ 8 (195)
||||-|+.
T Consensus 25 mEEKFGVs 32 (47)
T d2gyc31 25 MEEKFGVS 32 (47)
T ss_dssp HHHHTCTT
T ss_pred HHHHhCcc
Confidence 56676664
No 4
>d1evsa_ a.26.1.1 (A:) Oncostatin M {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.89 E-value=4e+02 Score=19.02 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=1.7
Q ss_pred cccCCCCCcccCCCCCCC
Q 029313 14 TRMDAPTADVENQTPSSG 31 (195)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~ 31 (195)
|.++|++.+++.+||+++
T Consensus 138 tq~~~gas~p~~ptP~sd 155 (184)
T d1evsa_ 138 TKAGRGASQPPTPTPASD 155 (184)
T ss_dssp ---------------CCC
T ss_pred CCCCCCCCCCCCCCCchH
Confidence 334444444455666655
No 5
>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.58 E-value=1.8e+02 Score=17.86 Aligned_cols=12 Identities=25% Similarity=0.263 Sum_probs=7.2
Q ss_pred cccccCCCCCcc
Q 029313 12 FETRMDAPTADV 23 (195)
Q Consensus 12 ~~~~~~~~~~~~ 23 (195)
+.+|..||.+|.
T Consensus 4 ~~~~~~pP~~P~ 15 (108)
T d1x4za1 4 DHGRLSPPEAPD 15 (108)
T ss_dssp CSSSCCCCCCCC
T ss_pred CCCccCCCccCC
Confidence 446666666653
No 6
>d2r7ca2 d.216.1.1 (A:2-143) Rotavirus NSP2 fragment, N-terminal domain {Simian 11 rotavirus [TaxId: 10923]}
Probab=3.04 E-value=1.7e+02 Score=20.43 Aligned_cols=9 Identities=44% Similarity=0.851 Sum_probs=6.4
Q ss_pred CCCcccccc
Q 029313 8 ESPQFETRM 16 (195)
Q Consensus 8 ~~~~~~~~~ 16 (195)
|||+++.|-
T Consensus 52 PPP~fkkR~ 60 (142)
T d2r7ca2 52 PPPQFKKRY 60 (142)
T ss_dssp CCGGGGGGB
T ss_pred CCHHHHhhc
Confidence 677887764
No 7
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.99 E-value=5.3e+02 Score=14.97 Aligned_cols=17 Identities=6% Similarity=0.186 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029313 168 ISMQFLAFLALAFSALI 184 (195)
Q Consensus 168 v~lsflA~l~~a~~s~l 184 (195)
++++|++|+..++...+
T Consensus 35 ~i~G~IGf~I~li~~~i 51 (56)
T d1rh5b_ 35 SLLGIIGYIIHVPATYI 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34556666665555444
No 8
>g1f8v.1 b.121.4.4 (A:,D:) Alphanodavirus capsid protein {Pariacoto virus [TaxId: 103782]}
Probab=2.96 E-value=3e+02 Score=21.98 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=12.9
Q ss_pred cccCCCCCcccCCCCCCC
Q 029313 14 TRMDAPTADVENQTPSSG 31 (195)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~ 31 (195)
+-.--||+|++||+-+-.
T Consensus 13 ~t~~~~~ap~~q~~~p~~ 30 (395)
T g1f8v.1 13 STALVPMAPASQRTGPAP 30 (395)
T ss_dssp STTTSCCCCCBCCSSCCC
T ss_pred eecccccCCCccccCCCC
Confidence 344568999999986543
No 9
>d1h3ga1 b.1.18.2 (A:3-95) Cyclomaltodextrinase, N-terminal domain {Flavobacterium sp. 92 [TaxId: 197856]}
Probab=2.61 E-value=1.7e+02 Score=18.89 Aligned_cols=10 Identities=30% Similarity=0.600 Sum_probs=4.3
Q ss_pred CccccccCCC
Q 029313 10 PQFETRMDAP 19 (195)
Q Consensus 10 ~~~~~~~~~~ 19 (195)
||+-+|..||
T Consensus 1 ~q~i~rvEPp 10 (93)
T d1h3ga1 1 PTAIEHMEPP 10 (93)
T ss_dssp CCSSCEEESS
T ss_pred CCccCCcCCC
Confidence 3444444443
No 10
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.51 E-value=9e+02 Score=16.65 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=31.3
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCCccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 029313 36 AITRRWKREDLLKRGSLALRGLAMVFSLLAFIVMASNRHGDWKDFDKYEEFRYVLAIAILSTLYTLGQVLRHVHELSTG 114 (195)
Q Consensus 36 ~~~~r~kr~~~l~~~~l~LR~la~~~slaA~~vM~t~~qt~~a~f~~~~af~ylv~an~I~~~Ysllql~~~~~~l~~~ 114 (195)
...+.|+.. .+.....++=++.++.-+.-+.+...+|+ .. .+...++....+.=.++++..+...+.....+
T Consensus 30 ~~~~~~~~~-~~~~~~~ii~v~gi~gN~lvi~vi~~~k~-----lr-~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~ 101 (348)
T d1u19a_ 30 YLAEPWQFS-MLAAYMFLLIMLGFPINFLTLYVTVQHKK-----LR-TPLNYILLNLAVADLFMVFGGFTTTLYTSLHG 101 (348)
T ss_dssp TTSCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHSTT-----CC-SHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred ccccHHHHH-HHHHHHHHHHHHHHHHHHHeehhhhccCC-----CC-CHhHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 334555442 22233333334444455555566666663 22 23333333322222445555555555444434
Done!