BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029314
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DY0|A Chain A, Crystal Structure Of Project Jw0458 From Escherichia Coli
pdb|2DY0|B Chain B, Crystal Structure Of Project Jw0458 From Escherichia Coli
Length = 190
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 109/146 (74%)
Query: 2 ASADVKAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKN 61
S+ + A ++ + ++I+ I D+PKPGI+F+D+T+LL D KA+ +IDL VERYK+
Sbjct: 4 GSSGMTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAG 63
Query: 62 ISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAV 121
I+ V G EARGF+FG P+AL +G FVP+RKP KLP E ISE Y LEYG D +E+HV A+
Sbjct: 64 ITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAI 123
Query: 122 QAGERALIVDDLVATGGTLSAAIRLL 147
+ G++ L+VDDL+ATGGT+ A ++L+
Sbjct: 124 KPGDKVLVVDDLLATGGTIEATVKLI 149
>pdb|1ORE|A Chain A, Human Adenine Phosphoribosyltransferase
pdb|1ZN7|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN7|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN8|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN8|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN9|A Chain A, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
pdb|1ZN9|B Chain B, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
Length = 180
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 97/158 (61%), Gaps = 5/158 (3%)
Query: 10 DPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKN---ISVVA 66
D + + IR PDFP PG++F+DI+ +L D +FR I L K + I +A
Sbjct: 3 DSELQLVEQRIRSFPDFPTPGVVFRDISPVLKDPASFRAAIGLLARHLKATHGGRIDYIA 62
Query: 67 GIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGER 126
G+++RGF+FGP +A +G V +RK KLPG + YSLEYGK +E+ A++ G+R
Sbjct: 63 GLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWASYSLEYGKAELEIQKDALEPGQR 122
Query: 127 ALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLN 164
++VDDL+ATGGT++AA LLG Q +L C+ ++
Sbjct: 123 VVVVDDLLATGGTMNAACELLGRLQAE--VLECVSLVE 158
>pdb|1G2Q|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2Q|B Chain B, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2P|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
Length = 187
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 71/120 (59%), Gaps = 4/120 (3%)
Query: 19 AIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFV----ERYKDKNISVVAGIEARGFI 74
A+ P+FP GI+F+D + + F+ ID F E + + I + G+E+RGF+
Sbjct: 13 ALHQYPNFPSEGILFEDFLPIFRNPGLFQKLIDAFKLHLEEAFPEVKIDYIVGLESRGFL 72
Query: 75 FGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLV 134
FGP +ALA+G FVP+RK KLPGE Y EYG D+ E+ A+ AG +IVDD++
Sbjct: 73 FGPTLALALGVGFVPVRKAGKLPGECFKATYEKEYGSDLFEIQKNAIPAGSNVIIVDDII 132
>pdb|1L1Q|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine
pdb|1L1R|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine, Mg2+ And Prpp
Length = 186
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
Query: 13 IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARG 72
+A + I+ IPDFP GI F+D++ +L A YKD I+ V GIE+RG
Sbjct: 5 VADAHALIKTIPDFPTKGIAFKDLSDILSTPAALDAVRKEVTAHYKDVPITKVVGIESRG 64
Query: 73 FIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDV-MEMHVGAVQAGERALIVD 131
FI G +A ++G FV +RK KLPG+V + +EY K V +E+ + + L+ D
Sbjct: 65 FILGGIVANSLGVGFVALRKAGKLPGDVCKCTFDMEYQKGVTIEVQKRQLGPHDVVLLHD 124
Query: 132 DLVATGGTLSAAIRL 146
D++ATGGTL AAI L
Sbjct: 125 DVLATGGTLLAAIEL 139
>pdb|1MZV|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
(Aprt) From Leishmania Tarentolae
Length = 235
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 79/140 (56%), Gaps = 6/140 (4%)
Query: 27 PKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNI--SVVAGIEARGFIFGPPIALAIG 84
P+ F D++++ + + D VERY+ + + + G +ARGF+FGP IA+ +G
Sbjct: 36 PRNVPRFADVSSITESPETLKAIRDFLVERYRTMSPAPTHILGFDARGFLFGPMIAVELG 95
Query: 85 AKFVPMRKPKKLPGEVI-SEEYSLEYGK---DVMEMHVGAVQAGERALIVDDLVATGGTL 140
FV MRK K G +I SE Y EY + +VM + G++ R +++DD++ATGGT
Sbjct: 96 IPFVLMRKADKNAGLLIRSEPYEKEYKEAAPEVMTIRHGSIGKNSRVVLIDDVLATGGTA 155
Query: 141 SAAIRLLGSFQNHIFILICI 160
+ ++L+ + + ++ I
Sbjct: 156 LSGLQLVEASGAEVVEMVSI 175
>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani.
pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
Length = 236
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 73/127 (57%), Gaps = 6/127 (4%)
Query: 27 PKPGIMFQDITTLLLDTKAFRDTIDLFVERYK--DKNISVVAGIEARGFIFGPPIALAIG 84
P+ F D++++ + + D V+RY+ + + G +ARGF+FGP IA+ +
Sbjct: 35 PRNVPRFADVSSITESPETLKAIRDFLVQRYRAMSPAPTHILGFDARGFLFGPMIAVELE 94
Query: 85 AKFVPMRKPKKLPGEVI-SEEYSLEYGK---DVMEMHVGAVQAGERALIVDDLVATGGTL 140
FV MRK K G +I SE Y EY + +VM + G++ G R +++DD++ATGGT
Sbjct: 95 IPFVLMRKADKNAGLLIRSEPYEKEYKEAAPEVMTIRYGSIGKGSRVVLIDDVLATGGTA 154
Query: 141 SAAIRLL 147
+ ++L+
Sbjct: 155 LSGLQLV 161
>pdb|1O57|A Chain A, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|B Chain B, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|C Chain C, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|D Chain D, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
Length = 291
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 52 LFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKL-PGEVISEEYSLEYG 110
LF + ++ I VV + +G A + V +RK K+ G +S Y
Sbjct: 121 LFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSINYVSGSS 180
Query: 111 KDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHI 154
+ M + +++ G LI+DD + GGT++ I LL F ++
Sbjct: 181 NRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANV 226
>pdb|1P4A|A Chain A, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|B Chain B, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|C Chain C, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|D Chain D, Crystal Structure Of The Purr Complexed With Cprpp
Length = 285
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 52 LFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKL-PGEVISEEYSLEYG 110
LF + ++ I VV + +G A + V +RK K+ G +S Y
Sbjct: 121 LFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSINYVSGSS 180
Query: 111 KDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHI 154
+ M + +++ G LI+DD + GGT++ I LL F ++
Sbjct: 181 NRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANV 226
>pdb|1U9Y|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Z|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
Length = 284
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 22/132 (16%)
Query: 46 FRDTIDLFVERYKDK-NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEE 104
+ D + E KDK N +V + F + + A++ + K + P E+
Sbjct: 139 YGDAVPKLAEYVKDKLNDPIVLAPDKGALEFAKTASKILNAEYDYLEKTRLSPTEI---- 194
Query: 105 YSLEYGKDVMEMHVGAVQAGER-ALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQ-- 161
++ + A +R IVDD+++TGGT++ A++LL I C+
Sbjct: 195 ----------QIAPKTLDAKDRDVFIVDDIISTGGTMATAVKLLKEQGAKKIIAACVHPV 244
Query: 162 ----MLNACFSS 169
LN +S+
Sbjct: 245 LIGDALNKLYSA 256
>pdb|3MBI|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|C Chain C, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|D Chain D, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
Length = 287
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 51 DLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYG 110
D V YK+ ++ V + G I+ +G K + K K++ +
Sbjct: 145 DAIVRYYKNVDVDYVVSPDDGGLARVADISAKLGKKHFFIEK-KRIDDRTV--------- 194
Query: 111 KDVMEMHVGAVQA-GERALIVDDLVATGGTLSAAIRLL 147
EM V V G++ LIVDD+++TGGT++ + LL
Sbjct: 195 ----EMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLL 228
>pdb|3LPN|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LPN|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LRT|A Chain A, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3LRT|B Chain B, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3NAG|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
pdb|3NAG|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
Length = 286
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 51 DLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYG 110
D V YK+ ++ V + G I+ +G K + K K++ +
Sbjct: 143 DAIVRYYKNVDVDYVVSPDDGGLARVADISAKLGKKHFFIEK-KRIDDRTV--------- 192
Query: 111 KDVMEMHVGAVQA-GERALIVDDLVATGGTLSAAIRLL 147
EM V V G++ LIVDD+++TGGT++ + LL
Sbjct: 193 ----EMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLL 226
>pdb|2E4H|A Chain A, Solution Structure Of Cytoskeletal Protein In Complex With
Tubulin Tail
Length = 98
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 119 GAVQAGERALIVDDLVATGGTLSAAIRLLGS 149
G+++ GER L + D V GGT + +R LG
Sbjct: 1 GSIKKGERELKIGDRVLVGGTKAGVVRFLGE 31
>pdb|2CP6|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 172
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 117 HVGAVQAGERALIVDDLVATGGTLSAAIRLLG 148
G+++ GER L + D V GGT + +R LG
Sbjct: 28 EAGSIKKGERELKIGDRVLVGGTKAGVVRFLG 59
>pdb|3QW4|B Chain B, Structure Of Leishmania Donovani Ump Synthase
pdb|3QW4|C Chain C, Structure Of Leishmania Donovani Ump Synthase
Length = 453
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 78 PIALAIGAKF-VPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT 136
PIA AI + VP+ P++ ++ + ++E G + G+R +I+DDLV+T
Sbjct: 329 PIASAISNEMNVPLIYPRR-EAKIYGTKAAIE----------GEYKKGDRVVIIDDLVST 377
Query: 137 GGTLSAAIRLLGS 149
G T AI L S
Sbjct: 378 GETKVEAIEKLRS 390
>pdb|3A3C|A Chain A, Crystal Structure Of Tim40MIA40 FUSING MBP, C296S AND
C298S Mutant
Length = 451
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKD--KNI 62
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD N
Sbjct: 310 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNS 366
Query: 63 SVVAGIEARGFIFGPP 78
S V G RG I G P
Sbjct: 367 SSVPG---RGSIEGRP 379
>pdb|2ZXT|A Chain A, Crystal Structure Of Tim40MIA40, A DISULFIDE RELAY SYSTEM
IN Mitochondria, Solved As Mbp Fusion Protein
Length = 465
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKD--KNI 62
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD N
Sbjct: 312 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNS 368
Query: 63 SVVAGIEARGFIFGPP 78
S V G RG I G P
Sbjct: 369 SSVPG---RGSIEGRP 381
>pdb|3CSB|A Chain A, Crystal Structure Of Monobody Ysx1MALTOSE BINDING PROTEIN
Fusion Complex
Length = 465
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 310 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTRI 366
Query: 65 VAG 67
G
Sbjct: 367 TKG 369
>pdb|1T0K|A Chain A, Joint X-ray And Nmr Refinement Of Yeast L30e-mrna Complex
Length = 381
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKD--KNI 62
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD N
Sbjct: 313 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNS 369
Query: 63 SVVAGIEARGFIFG 76
S V G RG I G
Sbjct: 370 SSVPG---RGSIEG 380
>pdb|1NMU|A Chain A, Mbp-L30
pdb|1NMU|C Chain C, Mbp-L30
Length = 382
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKD--KNI 62
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD N
Sbjct: 313 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNS 369
Query: 63 SVVAGIEARGFIFG 76
S V G RG I G
Sbjct: 370 SSVPG---RGSIEG 380
>pdb|2AEE|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Pyogenes
pdb|2AEE|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Pyogenes
Length = 211
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 58/144 (40%), Gaps = 40/144 (27%)
Query: 6 VKAQDP--RIAGISSAI----RVIPDFPKPGIMFQDITTLLLDTKAFRDTIDL-FVERYK 58
+K +DP +GI S I RV +PK RD I+ FVE K
Sbjct: 21 LKPEDPFTWASGIKSPIYTDNRVTLSYPKT-----------------RDLIENGFVETIK 63
Query: 59 DK--NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEM 116
+ V+AG G G IA + F +R K G G +
Sbjct: 64 AHFPEVEVIAGTATAGIPHGAIIADKMTLPFAYIRSKPKDHGA----------GNQIE-- 111
Query: 117 HVGAVQAGERALIVDDLVATGGTL 140
G V G++ +I++DL++TGG++
Sbjct: 112 --GRVLKGQKMVIIEDLISTGGSV 133
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 79 IALAIGAKFVPMRKPKKLPGEVISEEY---SLEYGKDVMEMHVGAVQ 122
IALA G F+ M +PKK ++ E+ S+ GK + VG ++
Sbjct: 120 IALATGCAFIKMSQPKKRAETLMFSEHAVISMRDGKLTLMFRVGNLR 166
>pdb|3CSG|A Chain A, Crystal Structure Of Monobody Ys1(Mbp-74)MALTOSE BINDING
Protein Fusion Complex
Length = 461
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 310 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTRI 366
Query: 65 VAG 67
G
Sbjct: 367 TKG 369
>pdb|2OBG|A Chain A, Crystal Structure Of Monobody Mbp-74MALTOSE BINDING
PROTEIN FUSION Complex
Length = 461
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 310 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTRI 366
Query: 65 VAG 67
G
Sbjct: 367 TKG 369
>pdb|3EHS|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (Crfr1)
Length = 476
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 314 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNA 370
Query: 65 VA 66
A
Sbjct: 371 AA 372
>pdb|3EHT|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (crfr1)
In Complex With Crf
Length = 476
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 314 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNA 370
Query: 65 VA 66
A
Sbjct: 371 AA 372
>pdb|3MQ9|A Chain A, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|B Chain B, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|C Chain C, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|D Chain D, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|E Chain E, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|F Chain F, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|G Chain G, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|H Chain H, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
Length = 471
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 326 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTRI 382
Query: 65 VA 66
A
Sbjct: 383 TA 384
>pdb|4H8S|A Chain A, Crystal Structure Of Human Appl2barph Domain
pdb|4H8S|B Chain B, Crystal Structure Of Human Appl2barph Domain
pdb|4H8S|C Chain C, Crystal Structure Of Human Appl2barph Domain
pdb|4H8S|D Chain D, Crystal Structure Of Human Appl2barph Domain
Length = 407
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 44 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISE 103
K DT+ L + ++++K+++ V+ ++ +FG LA + M K +LP + +E
Sbjct: 128 KQLADTMVLPIIQFREKDLTEVSTLKD---LFG----LASNEHDLSMAKYSRLPKKKENE 180
Query: 104 EYSLEYGKDV----MEMHVGAVQ 122
+ E GK+V + H+ ++Q
Sbjct: 181 KVKTEVGKEVAAARRKQHLSSLQ 203
>pdb|3DEZ|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
pdb|3DEZ|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
Length = 243
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 119 GAVQAGERALIVDDLVATGGTLSAAI 144
G V G++ +I++DL++TGG++ A+
Sbjct: 144 GRVTKGQKMVIIEDLISTGGSVLDAV 169
>pdb|3M3H|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor'
pdb|3OSC|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
Length = 234
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 119 GAVQAGERALIVDDLVATGGTLSAAIRLL 147
G + G++ ++V+DL++TGG+ + L
Sbjct: 132 GKAEKGQKVVVVEDLISTGGSAITCVEAL 160
>pdb|3N93|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 3
pdb|3N93|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 3
pdb|3N95|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|C Chain C, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|D Chain D, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N96|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|C Chain C, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|D Chain D, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
Length = 482
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 314 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNA 370
Query: 65 VA 66
A
Sbjct: 371 AA 372
>pdb|3N94|A Chain A, Crystal Structure Of Human Pituitary Adenylate Cyclase 1
Receptor- Short N-Terminal Extracellular Domain
Length = 475
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 314 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNA 370
Query: 65 VA 66
A
Sbjct: 371 AA 372
>pdb|2EHJ|A Chain A, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|B Chain B, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|C Chain C, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|D Chain D, Structure Of Uracil Phosphoribosyl Transferase
Length = 208
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 127 ALIVDDLVATGGTLSAAIRLL 147
ALIVD ++ATGG++ A I LL
Sbjct: 126 ALIVDPMLATGGSVIATIDLL 146
>pdb|2E55|A Chain A, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|B Chain B, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|C Chain C, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|D Chain D, Structure Of Aq2163 Protein From Aquifex Aeolicus
Length = 208
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 124 GERALIVDDLVATGGTLSAAIR 145
G+ +I+D ++ATGGTL A+R
Sbjct: 121 GKIVVILDPMLATGGTLEVALR 142
>pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|A Chain A, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|Z Chain Z, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
Length = 509
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 8 AQDPRIAGISSAIR---VIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 313 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNA 369
Query: 65 VA 66
A
Sbjct: 370 AA 371
>pdb|3C4M|A Chain A, Structure Of Human Parathyroid Hormone In Complex With The
Extracellular Domain Of Its G-Protein-Coupled Receptor
(Pth1r)
pdb|3C4M|B Chain B, Structure Of Human Parathyroid Hormone In Complex With The
Extracellular Domain Of Its G-Protein-Coupled Receptor
(Pth1r)
pdb|3H3G|A Chain A, Crystal Structure Of The Extracellular Domain Of The Human
Parathyroid Hormone Receptor (Pth1r) In Complex With
Parathyroid Hormone-Related Protein (Pthrp)
Length = 539
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 314 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNA 370
Query: 65 VA 66
A
Sbjct: 371 AA 372
>pdb|3L2J|A Chain A, Dimeric Structure Of The Ligand-Free Extracellular Domain
Of Parathyroid Hormone Receptor (Pth1r)
pdb|3L2J|B Chain B, Dimeric Structure Of The Ligand-Free Extracellular Domain
Of Parathyroid Hormone Receptor (Pth1r)
Length = 535
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 8 AQDPRIAGI---SSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISV 64
A+DPRIA + ++P+ P+ + + T +++ + R T+D E KD +
Sbjct: 310 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVD---EALKDAQTNA 366
Query: 65 VA 66
A
Sbjct: 367 AA 368
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,387,320
Number of Sequences: 62578
Number of extensions: 208841
Number of successful extensions: 931
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 905
Number of HSP's gapped (non-prelim): 51
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)