Query 029314
Match_columns 195
No_of_seqs 197 out of 1355
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 10:55:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1712 Adenine phosphoribosyl 100.0 1.2E-34 2.6E-39 221.3 14.4 158 9-166 4-164 (183)
2 PLN02293 adenine phosphoribosy 100.0 1.9E-33 4.1E-38 224.7 20.7 162 4-165 5-166 (187)
3 TIGR01090 apt adenine phosphor 100.0 4.4E-30 9.4E-35 202.4 19.6 167 16-187 1-167 (169)
4 PRK02304 adenine phosphoribosy 100.0 9.8E-30 2.1E-34 201.4 20.4 170 13-188 3-172 (175)
5 COG0503 Apt Adenine/guanine ph 100.0 4E-29 8.6E-34 198.6 18.9 172 13-188 5-176 (179)
6 PRK09219 xanthine phosphoribos 100.0 2.1E-26 4.5E-31 184.4 20.1 169 11-189 3-178 (189)
7 PRK12560 adenine phosphoribosy 100.0 2.5E-26 5.4E-31 183.8 20.2 168 15-191 5-178 (187)
8 TIGR01744 XPRTase xanthine pho 99.9 4.6E-26 9.9E-31 182.7 20.3 171 11-190 3-179 (191)
9 TIGR01743 purR_Bsub pur operon 99.9 2.1E-25 4.6E-30 186.5 20.2 168 12-191 85-255 (268)
10 PRK13810 orotate phosphoribosy 99.9 2E-25 4.4E-30 178.4 18.0 138 32-188 44-181 (187)
11 PRK08558 adenine phosphoribosy 99.9 6.5E-25 1.4E-29 181.5 20.2 166 11-188 67-236 (238)
12 PRK09213 pur operon repressor; 99.9 5E-25 1.1E-29 184.6 19.1 148 12-165 87-237 (271)
13 PRK07322 adenine phosphoribosy 99.9 8.7E-24 1.9E-28 167.9 17.2 150 16-166 8-162 (178)
14 PRK13809 orotate phosphoribosy 99.9 1.7E-23 3.7E-28 169.6 18.5 140 32-188 38-177 (206)
15 PRK13811 orotate phosphoribosy 99.9 6.1E-23 1.3E-27 161.9 17.3 135 32-189 30-164 (170)
16 PRK13812 orotate phosphoribosy 99.9 6.1E-23 1.3E-27 162.7 17.3 136 32-188 31-166 (176)
17 PRK05500 bifunctional orotidin 99.9 7.8E-23 1.7E-27 183.1 18.7 164 7-189 282-453 (477)
18 PRK00455 pyrE orotate phosphor 99.9 3.6E-22 7.8E-27 161.5 18.2 138 32-189 33-173 (202)
19 TIGR00336 pyrE orotate phospho 99.9 5E-22 1.1E-26 157.1 16.0 139 32-188 24-169 (173)
20 PRK02277 orotate phosphoribosy 99.9 1.6E-21 3.4E-26 157.6 17.4 131 27-165 49-181 (200)
21 COG0461 PyrE Orotate phosphori 99.9 3.1E-21 6.8E-26 154.8 18.0 147 23-189 18-172 (201)
22 PRK06031 phosphoribosyltransfe 99.9 3.1E-21 6.7E-26 159.0 15.4 157 13-180 39-205 (233)
23 TIGR01367 pyrE_Therm orotate p 99.9 5.8E-21 1.2E-25 152.8 15.7 117 32-165 27-146 (187)
24 PF00156 Pribosyltran: Phospho 99.8 6.8E-20 1.5E-24 136.1 12.0 122 38-161 2-125 (125)
25 COG0856 Orotate phosphoribosyl 99.8 2.4E-18 5.2E-23 133.6 13.8 125 32-166 54-183 (203)
26 PRK09162 hypoxanthine-guanine 99.7 2.6E-16 5.6E-21 125.3 13.5 118 39-165 15-138 (181)
27 COG1040 ComFC Predicted amidop 99.7 3E-17 6.4E-22 134.9 7.8 123 40-163 88-223 (225)
28 TIGR00201 comF comF family pro 99.7 6.3E-17 1.4E-21 129.6 9.2 119 41-161 56-189 (190)
29 TIGR01203 HGPRTase hypoxanthin 99.7 3.7E-16 8E-21 122.8 12.9 119 40-166 2-126 (166)
30 PLN02238 hypoxanthine phosphor 99.7 1.7E-15 3.6E-20 121.4 13.1 119 38-165 9-138 (189)
31 PRK09177 xanthine-guanine phos 99.7 1.4E-15 2.9E-20 118.5 11.8 113 39-166 8-121 (156)
32 PRK11595 DNA utilization prote 99.6 2.1E-15 4.5E-20 124.1 11.6 121 40-162 84-225 (227)
33 PRK15423 hypoxanthine phosphor 99.6 9.4E-15 2E-19 116.1 12.8 118 38-165 6-133 (178)
34 PTZ00271 hypoxanthine-guanine 99.6 1.8E-14 4E-19 117.1 13.3 119 38-166 25-160 (211)
35 PRK05205 bifunctional pyrimidi 99.6 1.2E-14 2.6E-19 115.2 11.4 119 38-164 4-136 (176)
36 PRK08525 amidophosphoribosyltr 99.6 1.2E-14 2.7E-19 130.1 11.8 115 45-161 260-377 (445)
37 PTZ00149 hypoxanthine phosphor 99.6 3E-14 6.6E-19 117.8 12.8 131 35-165 52-191 (241)
38 PRK07199 phosphoribosylpyropho 99.6 1E-13 2.2E-18 118.5 15.4 110 62-187 161-270 (301)
39 PRK09246 amidophosphoribosyltr 99.6 1.9E-14 4.1E-19 130.6 10.4 117 44-161 276-395 (501)
40 PRK06781 amidophosphoribosyltr 99.5 2.5E-14 5.4E-19 128.8 10.0 114 45-160 268-384 (471)
41 COG0634 Hpt Hypoxanthine-guani 99.5 1.8E-13 3.9E-18 107.0 13.2 122 36-166 7-135 (178)
42 PRK00934 ribose-phosphate pyro 99.5 1.7E-13 3.7E-18 116.3 14.0 106 62-184 155-260 (285)
43 PRK07272 amidophosphoribosyltr 99.5 4.1E-14 8.9E-19 127.6 10.3 111 47-160 272-386 (484)
44 PLN02440 amidophosphoribosyltr 99.5 8.2E-14 1.8E-18 125.8 11.9 113 47-161 262-377 (479)
45 PRK02269 ribose-phosphate pyro 99.5 5E-13 1.1E-17 115.2 16.2 107 63-184 167-273 (320)
46 PRK07349 amidophosphoribosyltr 99.5 7.4E-14 1.6E-18 126.3 9.9 111 46-160 298-413 (500)
47 COG2236 Predicted phosphoribos 99.5 8.8E-14 1.9E-18 111.3 9.2 115 39-163 5-126 (192)
48 PRK04923 ribose-phosphate pyro 99.5 7.8E-13 1.7E-17 113.8 15.7 107 63-186 168-275 (319)
49 TIGR01134 purF amidophosphorib 99.5 5.5E-14 1.2E-18 125.9 8.4 110 47-160 260-374 (442)
50 PRK07631 amidophosphoribosyltr 99.5 1.2E-13 2.5E-18 124.4 9.4 111 46-160 269-384 (475)
51 PRK00553 ribose-phosphate pyro 99.5 1.5E-12 3.1E-17 112.7 15.6 90 64-169 171-260 (332)
52 PRK08341 amidophosphoribosyltr 99.5 2.2E-13 4.9E-18 121.7 10.8 112 45-160 256-370 (442)
53 PRK05793 amidophosphoribosyltr 99.5 3.4E-13 7.3E-18 121.6 11.3 112 48-161 276-390 (469)
54 PRK01259 ribose-phosphate pyro 99.5 1.9E-12 4.1E-17 111.1 15.4 87 61-160 158-244 (309)
55 COG0462 PrsA Phosphoribosylpyr 99.5 1.4E-12 2.9E-17 111.0 14.0 129 33-182 138-268 (314)
56 PRK09123 amidophosphoribosyltr 99.5 7.1E-13 1.5E-17 119.6 13.0 112 44-160 279-396 (479)
57 PRK03092 ribose-phosphate pyro 99.5 3.8E-12 8.3E-17 109.0 15.9 121 49-185 137-258 (304)
58 PRK02458 ribose-phosphate pyro 99.4 3.5E-12 7.6E-17 110.0 15.1 106 63-186 171-276 (323)
59 PRK06388 amidophosphoribosyltr 99.4 9.1E-13 2E-17 118.7 11.8 110 47-160 278-392 (474)
60 PRK06827 phosphoribosylpyropho 99.4 4.4E-12 9.4E-17 111.4 15.1 93 61-161 207-301 (382)
61 PRK07847 amidophosphoribosyltr 99.4 1.2E-12 2.5E-17 118.9 11.0 114 45-159 287-402 (510)
62 TIGR01251 ribP_PPkin ribose-ph 99.4 8.8E-12 1.9E-16 107.0 14.3 100 48-161 148-247 (308)
63 PLN02369 ribose-phosphate pyro 99.3 4.3E-11 9.3E-16 102.4 15.1 84 64-160 154-238 (302)
64 PRK02812 ribose-phosphate pyro 99.3 5.7E-11 1.2E-15 102.7 14.3 85 63-160 181-266 (330)
65 PLN02297 ribose-phosphate pyro 99.3 5E-11 1.1E-15 102.7 13.7 95 63-176 185-279 (326)
66 PTZ00145 phosphoribosylpyropho 99.2 2.7E-10 5.8E-15 101.3 14.3 105 63-184 281-391 (439)
67 COG2065 PyrR Pyrimidine operon 99.2 2.3E-10 5E-15 88.5 11.5 126 40-175 6-152 (179)
68 COG0034 PurF Glutamine phospho 99.2 1.1E-10 2.3E-15 103.2 8.2 110 46-160 269-384 (470)
69 PRK00129 upp uracil phosphorib 99.1 9.6E-10 2.1E-14 89.4 12.8 113 64-193 73-186 (209)
70 TIGR01091 upp uracil phosphori 99.1 1.5E-09 3.4E-14 88.1 12.6 114 64-194 71-185 (207)
71 PF14572 Pribosyl_synth: Phosp 99.1 1E-09 2.3E-14 87.1 11.0 119 63-187 5-142 (184)
72 COG1926 Predicted phosphoribos 99.1 1.3E-09 2.8E-14 87.7 11.0 117 44-161 9-161 (220)
73 KOG3367 Hypoxanthine-guanine p 99.1 1.1E-09 2.3E-14 85.5 10.1 123 34-166 30-167 (216)
74 KOG1448 Ribose-phosphate pyrop 98.9 1.4E-08 3E-13 85.5 10.9 118 33-169 137-256 (316)
75 KOG0572 Glutamine phosphoribos 98.9 5.7E-09 1.2E-13 90.4 6.8 110 47-160 278-392 (474)
76 PF15609 PRTase_2: Phosphoribo 98.3 3.9E-05 8.4E-10 61.3 13.6 151 32-182 17-180 (191)
77 PLN02541 uracil phosphoribosyl 98.1 3.5E-05 7.7E-10 64.1 10.7 64 123-193 156-221 (244)
78 PF14681 UPRTase: Uracil phosp 97.9 0.00086 1.9E-08 54.5 15.7 88 64-164 70-163 (207)
79 COG0035 Upp Uracil phosphoribo 97.3 0.0019 4.1E-08 52.4 9.1 87 64-164 73-165 (210)
80 PF15610 PRTase_3: PRTase ComF 96.2 0.048 1E-06 46.0 9.3 41 113-154 128-168 (274)
81 KOG1503 Phosphoribosylpyrophos 96.0 0.11 2.3E-06 43.4 10.2 119 36-160 146-283 (354)
82 KOG1377 Uridine 5'- monophosph 91.3 0.33 7.2E-06 40.5 4.3 124 32-164 64-192 (261)
83 KOG1017 Predicted uracil phosp 88.2 1.6 3.4E-05 35.5 5.8 34 121-154 186-219 (267)
84 PF13793 Pribosyltran_N: N-ter 85.4 12 0.00027 27.4 10.3 74 71-158 8-85 (116)
85 PRK04940 hypothetical protein; 81.4 12 0.00027 29.7 8.1 75 6-91 10-89 (180)
86 PRK02812 ribose-phosphate pyro 78.6 30 0.00066 30.1 10.3 75 68-156 26-104 (330)
87 PTZ00145 phosphoribosylpyropho 77.6 35 0.00075 31.0 10.6 80 64-157 120-203 (439)
88 PLN02369 ribose-phosphate pyro 76.3 27 0.00059 29.9 9.3 69 74-156 2-74 (302)
89 PRK00934 ribose-phosphate pyro 75.7 32 0.00069 29.2 9.5 72 71-156 7-81 (285)
90 PRK07199 phosphoribosylpyropho 74.0 48 0.001 28.4 10.3 74 70-157 9-85 (301)
91 PRK04923 ribose-phosphate pyro 73.7 48 0.001 28.7 10.2 73 70-156 13-89 (319)
92 PRK01259 ribose-phosphate pyro 73.2 49 0.0011 28.5 10.1 72 71-156 8-83 (309)
93 PRK03092 ribose-phosphate pyro 72.4 34 0.00074 29.4 9.0 68 75-156 1-72 (304)
94 PRK00553 ribose-phosphate pyro 71.1 64 0.0014 28.1 10.4 74 69-156 15-92 (332)
95 TIGR01251 ribP_PPkin ribose-ph 71.0 37 0.0008 29.1 8.9 72 71-156 8-84 (308)
96 PRK02269 ribose-phosphate pyro 71.0 69 0.0015 27.7 10.8 73 70-156 12-88 (320)
97 TIGR02990 ectoine_eutA ectoine 68.4 13 0.00029 30.7 5.5 51 138-192 106-157 (239)
98 COG3535 Uncharacterized conser 67.9 85 0.0018 27.6 13.0 102 41-155 76-187 (357)
99 COG0462 PrsA Phosphoribosylpyr 66.4 37 0.00081 29.5 7.8 73 72-158 13-89 (314)
100 COG3473 Maleate cis-trans isom 66.1 13 0.00028 30.6 4.6 51 138-192 104-155 (238)
101 PRK02458 ribose-phosphate pyro 61.1 1.1E+02 0.0024 26.5 11.0 74 69-156 15-92 (323)
102 PF05728 UPF0227: Uncharacteri 60.7 40 0.00087 26.8 6.7 77 7-90 11-87 (187)
103 PF11382 DUF3186: Protein of u 60.4 23 0.00049 30.5 5.5 42 121-162 80-121 (308)
104 PF01488 Shikimate_DH: Shikima 59.9 24 0.00052 26.2 5.0 36 122-164 10-45 (135)
105 PF12646 DUF3783: Domain of un 58.9 39 0.00085 21.5 5.2 48 126-178 2-49 (58)
106 PLN02297 ribose-phosphate pyro 55.8 1.4E+02 0.003 26.0 10.4 76 69-157 22-101 (326)
107 PF07931 CPT: Chloramphenicol 54.1 20 0.00044 28.2 3.9 36 126-163 84-120 (174)
108 COG2984 ABC-type uncharacteriz 50.3 1.7E+02 0.0038 25.5 11.7 128 34-188 65-196 (322)
109 PRK07188 nicotinate phosphorib 49.4 27 0.00059 30.7 4.3 63 123-188 202-285 (352)
110 smart00450 RHOD Rhodanese Homo 48.0 39 0.00084 22.3 4.2 33 121-156 53-85 (100)
111 cd01715 ETF_alpha The electron 47.8 41 0.00089 25.8 4.7 41 49-89 71-112 (168)
112 PRK04195 replication factor C 47.7 2.1E+02 0.0046 26.0 10.0 113 35-154 12-133 (482)
113 cd00158 RHOD Rhodanese Homolog 47.0 43 0.00094 21.7 4.2 32 122-156 48-79 (89)
114 PRK12342 hypothetical protein; 45.2 66 0.0014 27.0 5.8 40 50-89 98-141 (254)
115 PF08901 DUF1847: Protein of u 45.0 27 0.00059 27.2 3.2 47 138-186 41-87 (157)
116 cd01444 GlpE_ST GlpE sulfurtra 43.8 40 0.00087 22.6 3.7 32 122-156 54-85 (96)
117 cd01529 4RHOD_Repeats Member o 43.3 47 0.001 22.5 4.1 31 122-155 54-84 (96)
118 PRK06827 phosphoribosylpyropho 42.2 2.5E+02 0.0055 25.0 10.2 36 121-157 74-127 (382)
119 COG0784 CheY FOG: CheY-like re 40.4 65 0.0014 22.4 4.6 26 123-151 4-29 (130)
120 cd04908 ACT_Bt0572_1 N-termina 40.2 95 0.0021 19.6 6.6 51 133-183 8-64 (66)
121 cd01714 ETF_beta The electron 39.9 54 0.0012 26.2 4.4 44 42-88 92-139 (202)
122 cd01985 ETF The electron trans 37.8 57 0.0012 25.2 4.2 40 50-89 80-120 (181)
123 PF01012 ETF: Electron transfe 37.4 34 0.00073 26.0 2.7 46 41-89 73-119 (164)
124 PRK03359 putative electron tra 37.0 61 0.0013 27.2 4.4 41 49-89 100-144 (256)
125 PF02875 Mur_ligase_C: Mur lig 36.3 69 0.0015 21.6 4.0 34 126-159 13-48 (91)
126 TIGR01809 Shik-DH-AROM shikima 35.0 81 0.0017 26.6 4.9 33 122-158 123-155 (282)
127 PRK10618 phosphotransfer inter 34.9 1.9E+02 0.004 28.8 8.0 34 121-157 686-719 (894)
128 TIGR03492 conserved hypothetic 34.6 77 0.0017 28.0 4.9 26 61-89 93-118 (396)
129 PRK01021 lpxB lipid-A-disaccha 34.3 1.1E+02 0.0024 29.1 6.0 45 45-89 294-341 (608)
130 PRK13584 hisG ATP phosphoribos 33.6 22 0.00048 28.9 1.2 19 131-156 149-167 (204)
131 PRK05928 hemD uroporphyrinogen 33.4 2.3E+02 0.0051 22.3 7.3 63 122-188 123-185 (249)
132 TIGR00215 lpxB lipid-A-disacch 33.2 1.2E+02 0.0027 26.5 6.0 39 52-90 80-119 (385)
133 KOG0731 AAA+-type ATPase conta 32.8 43 0.00093 32.6 3.1 27 64-90 348-375 (774)
134 KOG0081 GTPase Rab27, small G 31.7 1.7E+02 0.0036 23.3 5.7 30 60-89 123-160 (219)
135 PF01634 HisG: ATP phosphoribo 30.9 27 0.00059 27.3 1.3 17 132-155 112-128 (163)
136 PRK01686 hisG ATP phosphoribos 30.6 26 0.00057 28.6 1.2 11 132-142 160-170 (215)
137 cd01523 RHOD_Lact_B Member of 30.3 93 0.002 21.2 3.9 29 122-153 59-87 (100)
138 COG4565 CitB Response regulato 30.3 89 0.0019 25.8 4.1 19 134-152 29-47 (224)
139 PLN02331 phosphoribosylglycina 30.2 1.9E+02 0.004 23.4 6.0 51 134-188 7-57 (207)
140 COG0371 GldA Glycerol dehydrog 29.9 1.3E+02 0.0029 26.6 5.5 38 53-90 76-114 (360)
141 COG0120 RpiA Ribose 5-phosphat 29.8 84 0.0018 26.0 4.0 51 134-190 26-76 (227)
142 PF13241 NAD_binding_7: Putati 29.6 1.3E+02 0.0028 21.0 4.5 31 122-156 5-35 (103)
143 PF14502 HTH_41: Helix-turn-he 28.6 67 0.0015 19.9 2.5 20 136-155 19-38 (48)
144 COG4747 ACT domain-containing 28.6 1.7E+02 0.0036 22.0 5.0 44 139-183 16-66 (142)
145 cd01518 RHOD_YceA Member of th 28.6 1.2E+02 0.0025 20.7 4.2 31 122-155 59-89 (101)
146 COG0040 HisG ATP phosphoribosy 28.3 29 0.00063 29.8 1.1 19 131-156 160-178 (290)
147 PRK00779 ornithine carbamoyltr 27.9 1.2E+02 0.0026 26.0 4.8 71 74-155 110-180 (304)
148 COG0299 PurN Folate-dependent 27.6 1.7E+02 0.0036 23.8 5.2 50 134-187 8-57 (200)
149 COG3150 Predicted esterase [Ge 27.5 1.5E+02 0.0033 23.7 4.9 49 39-89 38-86 (191)
150 PF02684 LpxB: Lipid-A-disacch 26.9 1.3E+02 0.0029 26.6 5.0 41 46-86 67-108 (373)
151 PRK09189 uroporphyrinogen-III 26.9 2.9E+02 0.0063 22.2 6.8 63 122-188 116-178 (240)
152 TIGR01426 MGT glycosyltransfer 26.4 2.3E+02 0.0049 24.5 6.4 34 54-89 85-118 (392)
153 PF07726 AAA_3: ATPase family 26.4 2.9E+02 0.0062 20.9 6.9 75 74-151 14-90 (131)
154 PRK11749 dihydropyrimidine deh 26.0 2.9E+02 0.0063 24.6 7.2 57 123-184 272-329 (457)
155 PF04723 GRDA: Glycine reducta 25.9 1.3E+02 0.0027 23.1 4.0 59 122-182 3-67 (150)
156 TIGR00070 hisG ATP phosphoribo 25.8 37 0.0008 27.0 1.2 26 123-156 146-171 (182)
157 PRK13583 hisG ATP phosphoribos 25.8 30 0.00065 28.6 0.7 11 132-142 177-187 (228)
158 COG3620 Predicted transcriptio 25.6 77 0.0017 25.1 2.9 56 136-191 46-106 (187)
159 PF02142 MGS: MGS-like domain 25.4 95 0.0021 21.4 3.2 22 133-158 16-37 (95)
160 PRK12769 putative oxidoreducta 25.0 3.1E+02 0.0068 25.9 7.5 57 122-184 466-524 (654)
161 PF07728 AAA_5: AAA domain (dy 25.0 2.2E+02 0.0049 20.4 5.3 86 64-151 3-92 (139)
162 KOG0519 Sensory transduction h 25.0 86 0.0019 30.7 3.7 35 121-158 663-697 (786)
163 cd01528 RHOD_2 Member of the R 24.9 1.6E+02 0.0034 20.1 4.2 31 123-156 57-87 (101)
164 COG2006 Uncharacterized conser 24.6 2.5E+02 0.0055 24.1 6.0 63 122-188 35-113 (293)
165 COG0169 AroE Shikimate 5-dehyd 24.3 1.6E+02 0.0036 25.0 4.9 36 122-164 124-159 (283)
166 cd03786 GT1_UDP-GlcNAc_2-Epime 24.3 2.6E+02 0.0056 23.5 6.3 43 48-90 75-118 (363)
167 PF06032 DUF917: Protein of un 24.0 1.3E+02 0.0028 26.5 4.4 46 44-90 75-122 (353)
168 TIGR01316 gltA glutamate synth 23.9 3.5E+02 0.0075 24.2 7.3 57 122-184 270-327 (449)
169 TIGR01133 murG undecaprenyldip 23.7 2.2E+02 0.0048 23.7 5.7 38 52-89 81-118 (348)
170 PRK05329 anaerobic glycerol-3- 23.6 1.7E+02 0.0037 26.3 5.2 56 33-90 190-249 (422)
171 PF13528 Glyco_trans_1_3: Glyc 23.4 2.5E+02 0.0054 23.2 5.9 40 48-90 81-120 (318)
172 PRK00939 translation initiatio 23.4 2.8E+02 0.0061 19.7 6.0 62 122-186 34-98 (99)
173 KOG4622 Predicted nucleotide k 23.3 92 0.002 25.6 3.0 41 119-160 88-128 (291)
174 TIGR00236 wecB UDP-N-acetylglu 22.9 2.9E+02 0.0062 23.5 6.3 42 49-90 74-116 (365)
175 PF03681 UPF0150: Uncharacteri 22.5 24 0.00052 21.2 -0.4 19 132-150 23-41 (48)
176 PRK00258 aroE shikimate 5-dehy 22.3 2E+02 0.0043 24.0 5.1 31 122-156 121-151 (278)
177 PRK14089 ipid-A-disaccharide s 22.1 2.9E+02 0.0062 24.2 6.2 38 49-89 66-107 (347)
178 COG0588 GpmA Phosphoglycerate 22.1 95 0.0021 25.6 2.9 28 121-152 171-198 (230)
179 PRK07239 bifunctional uroporph 22.1 3.4E+02 0.0074 23.6 6.7 67 122-188 140-209 (381)
180 PF07355 GRDB: Glycine/sarcosi 21.9 2.6E+02 0.0057 24.7 5.7 49 39-90 61-117 (349)
181 PF09651 Cas_APE2256: CRISPR-a 21.7 1.5E+02 0.0032 22.2 3.8 46 46-91 73-124 (136)
182 PF13189 Cytidylate_kin2: Cyti 21.7 86 0.0019 24.3 2.6 20 70-89 10-29 (179)
183 cd01519 RHOD_HSP67B2 Member of 21.6 1.6E+02 0.0035 20.0 3.8 31 123-156 65-95 (106)
184 PF04392 ABC_sub_bind: ABC tra 21.4 2.8E+02 0.0062 23.0 5.9 49 35-90 37-87 (294)
185 PRK08057 cobalt-precorrin-6x r 21.2 1.9E+02 0.0042 24.0 4.7 36 58-93 187-224 (248)
186 cd01532 4RHOD_Repeat_1 Member 20.9 1.5E+02 0.0032 20.0 3.4 31 123-156 49-81 (92)
187 PF13738 Pyr_redox_3: Pyridine 20.7 2.5E+02 0.0054 21.4 5.1 28 121-152 164-191 (203)
188 PRK14027 quinate/shikimate deh 20.5 1.9E+02 0.0042 24.4 4.7 33 122-158 125-157 (283)
189 PRK03353 ribB 3,4-dihydroxy-2- 20.4 1.9E+02 0.0041 23.7 4.4 67 122-188 133-204 (217)
190 PRK12749 quinate/shikimate deh 20.4 2.3E+02 0.0049 24.0 5.1 32 122-157 122-153 (288)
191 TIGR01470 cysG_Nterm siroheme 20.4 2.2E+02 0.0047 22.8 4.7 29 122-154 7-35 (205)
192 cd01534 4RHOD_Repeat_3 Member 20.3 1.9E+02 0.0042 19.4 3.9 28 123-153 55-82 (95)
193 cd01525 RHOD_Kc Member of the 20.3 1.9E+02 0.0041 19.6 3.9 31 123-156 64-94 (105)
194 PF13685 Fe-ADH_2: Iron-contai 20.0 1.4E+02 0.0031 24.9 3.7 41 50-90 64-105 (250)
No 1
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.2e-34 Score=221.33 Aligned_cols=158 Identities=60% Similarity=1.018 Sum_probs=152.5
Q ss_pred CChHHHHHhhcccccCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHhcC---CCccEEEEeCCcchHhHHHHHHHhCC
Q 029314 9 QDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGA 85 (195)
Q Consensus 9 ~~~~~~~l~~~~r~~~~~p~~g~~~~d~~~i~~~p~~~~~l~~~la~~~~~---~~~D~Iv~v~~~G~~lA~~la~~l~~ 85 (195)
.+|+.+.+++.||.+|+||++|++|-|+.+++.||..++.+...+.+++++ .++|+|+|++.|||.++..+|.++|+
T Consensus 4 ~d~~~~~ik~~ir~~pdFPk~GI~F~Di~pll~dP~af~~lidlf~~h~~~~~~~~Id~iaGlEaRGFLFGP~iAlalG~ 83 (183)
T KOG1712|consen 4 ADPRLKYIKTAIRVVPDFPKKGIMFQDITPLLLDPKAFKKLIDLFVDHYRETFEMKIDVIAGLEARGFLFGPSIALALGA 83 (183)
T ss_pred ccHHHHHHHHhheeCCCCCCCceehhhhhhhhcCHHHHHHHHHHHHHHHHHHhcCcceEEEeeeecceecCcHHHHHhCC
Confidence 478999999999999999999999999999999999999999999999886 57999999999999999999999999
Q ss_pred CEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCc
Q 029314 86 KFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA 165 (195)
Q Consensus 86 p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~ 165 (195)
+|+.+||.+|+|+++++.+|..+|+.+.|+++.+.+.+|.||+||||++.||+|+.+|.++|++.|++++.++|+++.+.
T Consensus 84 ~fVPiRK~gKLPG~~i~~~Y~lEYg~d~~Emq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vieL~~ 163 (183)
T KOG1712|consen 84 GFVPIRKPGKLPGEVISESYELEYGEDRFEMQKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAEVVECACVIELPE 163 (183)
T ss_pred CeeecccCCCCCCceeEEEEeeecCccceeeeccccCCCCeEEEEechhhcCccHHHHHHHHHHhccEEEEEEEEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred c
Q 029314 166 C 166 (195)
Q Consensus 166 ~ 166 (195)
.
T Consensus 164 L 164 (183)
T KOG1712|consen 164 L 164 (183)
T ss_pred c
Confidence 5
No 2
>PLN02293 adenine phosphoribosyltransferase
Probab=100.00 E-value=1.9e-33 Score=224.74 Aligned_cols=162 Identities=73% Similarity=1.155 Sum_probs=148.9
Q ss_pred cCCCCCChHHHHHhhcccccCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHh
Q 029314 4 ADVKAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAI 83 (195)
Q Consensus 4 ~~~~~~~~~~~~l~~~~r~~~~~p~~g~~~~d~~~i~~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l 83 (195)
--.+++||+.+.|++.+|++|+||.+|+.|+|++.++.+|+.++.+++.|++++++.++|+|++++.+|+++|..+|..+
T Consensus 5 ~~~~~~~~~~~~l~~~i~~~~~~p~~gi~f~D~~~l~~~p~~~~~~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~lA~~L 84 (187)
T PLN02293 5 ENGDQGDPRLQGISSAIRVVPDFPKPGIMFQDITTLLLDPKAFKDTIDLFVERYRDMGISVVAGIEARGFIFGPPIALAI 84 (187)
T ss_pred ccccCCChhHHHHHHhCccCCCCCcCCcEEEECHHHhhCHHHHHHHHHHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999987789999999999999999999999
Q ss_pred CCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEec
Q 029314 84 GAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQML 163 (195)
Q Consensus 84 ~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~ 163 (195)
++|++++||.++.++......|..+++++.+++..+.+.+|++||||||++|||+|+.+++++|+++|+++++++++++.
T Consensus 85 g~p~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~v~~~~~~~~ 164 (187)
T PLN02293 85 GAKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAVEPGERALVIDDLIATGGTLCAAINLLERAGAEVVECACVIEL 164 (187)
T ss_pred CCCEEEEEecCCCCCceEEEEEeccCCceEEEEEcCccCCCCEEEEEeccccchHHHHHHHHHHHHCCCEEEEEEEEEEc
Confidence 99999999988887777766666677777777776666689999999999999999999999999999999999999987
Q ss_pred Cc
Q 029314 164 NA 165 (195)
Q Consensus 164 ~~ 165 (195)
..
T Consensus 165 ~~ 166 (187)
T PLN02293 165 PE 166 (187)
T ss_pred CC
Confidence 65
No 3
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=99.97 E-value=4.4e-30 Score=202.37 Aligned_cols=167 Identities=49% Similarity=0.785 Sum_probs=142.2
Q ss_pred HhhcccccCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEEEecCCC
Q 029314 16 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKK 95 (195)
Q Consensus 16 l~~~~r~~~~~p~~g~~~~d~~~i~~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~ 95 (195)
|+.+++.+|+||.||+.|+|++.++.+|+.++.+++.|++++.+.++|+|+|++.||+++|..+|..+++|+..++|+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~d~~~~l~~p~~~~~~~~~la~~i~~~~~d~ivgi~~~G~~~A~~la~~L~~~~~~i~k~~~ 80 (169)
T TIGR01090 1 LKQSIRSIPDFPKKGILFRDITPLLNNPELFRFLIDLLVERYKDANIDYIVGPEARGFIFGAALAYKLGVGFVPVRKPGK 80 (169)
T ss_pred ChhhcccCCCCCCCCceeEeChhhhcCHHHHHHHHHHHHHHhccCCCCEEEeehhccHHHHHHHHHHHCCCEEEEEeCCC
Confidence 45678889999999999999999999999999999999999987788999999999999999999999999988888776
Q ss_pred CCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCchhHHHHh
Q 029314 96 LPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACFSSYILLFS 175 (195)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~ 175 (195)
.++...+..++.+++.+.+++......+|++|||||||+|||+|+.++++.|+++|++++++++++++... .+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG~Tl~~a~~~L~~~Ga~~v~~~~l~~~~~~----~g~~~ 156 (169)
T TIGR01090 81 LPGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLATGGTAEATDELIRKLGGEVVEAAFLIELKDL----NGRAK 156 (169)
T ss_pred CCCceeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccchHHHHHHHHHHHHcCCEEEEEEEEEEcccc----ChHHH
Confidence 66666666666566666666554445699999999999999999999999999999999999999988742 34555
Q ss_pred hhhcCceeeEEe
Q 029314 176 YATNGFTQFTIT 187 (195)
Q Consensus 176 ~~~~~~~~~~~~ 187 (195)
++++ ++.+++.
T Consensus 157 i~~~-~~~~sl~ 167 (169)
T TIGR01090 157 LEPN-VPVFSLL 167 (169)
T ss_pred hccC-CceEEEE
Confidence 6555 7777664
No 4
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=99.97 E-value=9.8e-30 Score=201.36 Aligned_cols=170 Identities=51% Similarity=0.837 Sum_probs=144.1
Q ss_pred HHHHhhcccccCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEEEec
Q 029314 13 IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRK 92 (195)
Q Consensus 13 ~~~l~~~~r~~~~~p~~g~~~~d~~~i~~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk 92 (195)
.++|....+.+|.||.+++.|.|+++++.+|+.++.+++.+++.+.+.++|+|+|++.+|+++|..+|..+++|+.++||
T Consensus 3 ~~~l~~~~~~~~~~~~~~~~~~d~~~l~~~p~~~~~~~~~la~~~~~~~~d~Ivgv~~~Gi~~a~~la~~l~~p~~~~rk 82 (175)
T PRK02304 3 LEDLKSSIRTIPDFPKPGILFRDITPLLADPEAFREVIDALVERYKDADIDKIVGIEARGFIFGAALAYKLGIGFVPVRK 82 (175)
T ss_pred HHHHHHhhccCCCCCCCCcEEEeChhHhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEEc
Confidence 57899999999999999999999999999999999999999999987779999999999999999999999999999988
Q ss_pred CCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCchhHH
Q 029314 93 PKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACFSSYIL 172 (195)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~ 172 (195)
..+.++...+..++.+++.+.+.+......+|++|||||||+|||+|+.++++.|+++|+++++++++++++.. .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v~v~vl~~~~~~----~g 158 (175)
T PRK02304 83 PGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVIELPDL----GG 158 (175)
T ss_pred CCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccHHHHHHHHHHHHcCCEEEEEEEEEEcccc----cc
Confidence 77655555555565555666676655455799999999999999999999999999999999999999998742 13
Q ss_pred HHhhhhcCceeeEEee
Q 029314 173 LFSYATNGFTQFTITS 188 (195)
Q Consensus 173 ~~~~~~~~~~~~~~~~ 188 (195)
...++ |++..++..
T Consensus 159 ~~~l~--~~~~~sl~~ 172 (175)
T PRK02304 159 REKLE--GYPVKSLVK 172 (175)
T ss_pred hhhcC--CCceEEEEE
Confidence 33344 666666543
No 5
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=99.97 E-value=4e-29 Score=198.63 Aligned_cols=172 Identities=41% Similarity=0.639 Sum_probs=154.1
Q ss_pred HHHHhhcccccCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEEEec
Q 029314 13 IAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRK 92 (195)
Q Consensus 13 ~~~l~~~~r~~~~~p~~g~~~~d~~~i~~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk 92 (195)
.+.|.+.++..|+||++|+.|.|....+.++..+...+..+++.+.+.++|.|++++++||++|..+|.++|+|++.+||
T Consensus 5 ~~~L~~~i~~~~~~~~~g~~f~d~~~~~~~~~~~~~~i~~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vRK 84 (179)
T COG0503 5 MELLKDSIREIPDFPKGGILFVDITLLLGDPELLAKLIDELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPVRK 84 (179)
T ss_pred HHHHHHHHhhcccccCCCceEEecchhhcCcHHHHHHHHHHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEEEe
Confidence 57899999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred CCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCchhHH
Q 029314 93 PKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACFSSYIL 172 (195)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~ 172 (195)
.++.+.......+..+++...++++.+.+.+|+|||||||++.||+|+.++.++++++|++++++++++++++. .+
T Consensus 85 ~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~~~ie~~~~----~g 160 (179)
T COG0503 85 KGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTALALIELLEQAGAEVVGAAFVIELGEL----DG 160 (179)
T ss_pred cCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhcChHHHHHHHHHHHCCCEEEEEEEEEEcCcc----cc
Confidence 99988777766666667766788888777899999999999999999999999999999999999999998864 45
Q ss_pred HHhhhhcCceeeEEee
Q 029314 173 LFSYATNGFTQFTITS 188 (195)
Q Consensus 173 ~~~~~~~~~~~~~~~~ 188 (195)
++.++..+++.+++..
T Consensus 161 r~~l~~~~~~v~~l~~ 176 (179)
T COG0503 161 RKKLEDDGLPVFSLVR 176 (179)
T ss_pred chhhccCCceEEEEEe
Confidence 5667777777766653
No 6
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=99.95 E-value=2.1e-26 Score=184.36 Aligned_cols=169 Identities=21% Similarity=0.255 Sum_probs=138.2
Q ss_pred hHHHHHhhcccccCCCCCCCceEEechhhh---cCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCE
Q 029314 11 PRIAGISSAIRVIPDFPKPGIMFQDITTLL---LDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKF 87 (195)
Q Consensus 11 ~~~~~l~~~~r~~~~~p~~g~~~~d~~~i~---~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~ 87 (195)
+..+++.+.-|-+|+ | |++++.++ .||+.++.+++.+++.+.+.++|+|+|++.+||++|..+|.++++|+
T Consensus 3 ~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~P~~l~~i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~ 76 (189)
T PRK09219 3 LLEERILKDGKVLSG----N--ILKVDSFLNHQVDPKLMNEIGKEFARRFKDEGITKILTIEASGIAPAVMAALALGVPV 76 (189)
T ss_pred HHHHHHhcCCEEcCC----C--EEEEhhhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCE
Confidence 467788888888888 6 55667666 99999999999999999888899999999999999999999999999
Q ss_pred EEEecCCCCC--Cceeeee-eeec-ccceeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEec
Q 029314 88 VPMRKPKKLP--GEVISEE-YSLE-YGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQML 163 (195)
Q Consensus 88 ~~~rk~~~~~--~~~~~~~-~~~~-~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~ 163 (195)
+++||..+.+ ++..+.. ++.+ .....+++..+.+.+|+|||||||++|||+|+.+++++++++|++++++++++++
T Consensus 77 v~vRK~~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~~lvd~ 156 (189)
T PRK09219 77 VFAKKKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGIVIEK 156 (189)
T ss_pred EEEEECCCCCCCCceEEEEEeeeccCceEEEEEEhhhCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEEEEEEc
Confidence 9999987754 3444322 1111 1334567777667799999999999999999999999999999999999999988
Q ss_pred CccCchhHHHHhhhhcCceeeEEeec
Q 029314 164 NACFSSYILLFSYATNGFTQFTITSE 189 (195)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (195)
.. ..+++.+++.|++..++...
T Consensus 157 ~~----~~g~~~l~~~g~~~~sl~~~ 178 (189)
T PRK09219 157 SF----QDGRKLLEEKGYRVESLARI 178 (189)
T ss_pred cC----ccHHHHHHhcCCcEEEEEEe
Confidence 74 23566778888887776543
No 7
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=99.95 E-value=2.5e-26 Score=183.77 Aligned_cols=168 Identities=21% Similarity=0.290 Sum_probs=134.5
Q ss_pred HHhhcccccCCCCCCCc--eEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEEEec
Q 029314 15 GISSAIRVIPDFPKPGI--MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRK 92 (195)
Q Consensus 15 ~l~~~~r~~~~~p~~g~--~~~d~~~i~~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk 92 (195)
.|+..+|++|+||.+|. .|+|+++++. |+.++.+++.|++.+ +.++|+|++++.+|+++|..+|..+++|+.+.+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~D~~~~l~-P~~l~~~~~~l~~~~-~~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~~rk 82 (187)
T PRK12560 5 NLYKNARVVNSGKALTTVNEFTDQLPALR-PKVLKETAKEIIKYI-DKDIDKIVTEEDKGAPLATPVSLLSGKPLAMARW 82 (187)
T ss_pred HHHhhCCccCCCCCCCcceeEEeChhhcC-HHHHHHHHHHHHHHh-CCCCCEEEEEccccHHHHHHHHHhhCCCEEEecc
Confidence 36678999999999999 7999999999 999999999999988 6689999999999999999999999999999887
Q ss_pred CCCCCCceeeeee-eecccceeEE--EeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCch
Q 029314 93 PKKLPGEVISEEY-SLEYGKDVME--MHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACFSS 169 (195)
Q Consensus 93 ~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~ 169 (195)
.+..... ..+ ...++...++ +..+...+|++||||||++|||+|+.+++++|+++|++++++++++++...
T Consensus 83 ~~~~~~~---~~~~~~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~vvd~~~~--- 156 (187)
T PRK12560 83 YPYSLSE---LNYNVVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICVIEKTQN--- 156 (187)
T ss_pred CCCcccc---eeEEeeeeeccceeeeeEccCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEeccc---
Confidence 5431111 001 0112222222 222345699999999999999999999999999999999999999998752
Q ss_pred hHHHHhh-hhcCceeeEEeeccc
Q 029314 170 YILLFSY-ATNGFTQFTITSEGV 191 (195)
Q Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~ 191 (195)
.+++.+ +..|++..++.....
T Consensus 157 -~g~~~l~~~~gv~v~sl~~~~~ 178 (187)
T PRK12560 157 -NGRKKLFTQTGINVKSLVKIDV 178 (187)
T ss_pred -chHHHHhhccCCcEEEEEEEEE
Confidence 344555 678888888877654
No 8
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=99.95 E-value=4.6e-26 Score=182.72 Aligned_cols=171 Identities=19% Similarity=0.207 Sum_probs=135.8
Q ss_pred hHHHHHhhcccccCCCCCCCceEEech-hhhcCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEE
Q 029314 11 PRIAGISSAIRVIPDFPKPGIMFQDIT-TLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP 89 (195)
Q Consensus 11 ~~~~~l~~~~r~~~~~p~~g~~~~d~~-~i~~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~ 89 (195)
++.++|.+.=|-.|+ |+.|.|.. +...||+.++.+++.+++++.+.++|+|++++.+||++|..+|.++|+|+++
T Consensus 3 ~l~~~~~~~~~~~~~----~~i~~~~~~~~~~~p~~l~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~ 78 (191)
T TIGR01744 3 LLKQKIKEEGVVLPG----GILKVDSFLNHQIDPKLMQEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVVF 78 (191)
T ss_pred HHHHHHhcCCEEcCC----CEEEEehhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEE
Confidence 456777777788888 87655422 2337999999999999999988789999999999999999999999999999
Q ss_pred EecCCCCCC--ceee---eeeeecccceeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecC
Q 029314 90 MRKPKKLPG--EVIS---EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLN 164 (195)
Q Consensus 90 ~rk~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~ 164 (195)
+||..+.+. ..+. .+|.. +....++++.+.+.+|+|||||||++|||+|+.+++++++++||+++++++++++.
T Consensus 79 vRK~~k~~~~~~~~~~~~~s~~~-~~~~~l~i~~~~l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~~ 157 (191)
T TIGR01744 79 ARKKKPLTLTDNLLTASVHSFTK-QTTSTVAVSGEFLSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEKS 157 (191)
T ss_pred EEeCCCCCCCCcceEEEEEEeec-CccEEEEEEHHhCCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEec
Confidence 999876543 2222 22222 34445666665666999999999999999999999999999999999999999988
Q ss_pred ccCchhHHHHhhhhcCceeeEEeecc
Q 029314 165 ACFSSYILLFSYATNGFTQFTITSEG 190 (195)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (195)
+. .++..+++.|++.+++....
T Consensus 158 ~~----~g~~~l~~~gvpv~sL~~~~ 179 (191)
T TIGR01744 158 FQ----NGRQELVELGYRVESLARIQ 179 (191)
T ss_pred Cc----cHHHHHHhcCCcEEEEEEEe
Confidence 42 35666777887777665543
No 9
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=99.94 E-value=2.1e-25 Score=186.47 Aligned_cols=168 Identities=18% Similarity=0.338 Sum_probs=137.1
Q ss_pred HHHHHhhcccccCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEEEe
Q 029314 12 RIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMR 91 (195)
Q Consensus 12 ~~~~l~~~~r~~~~~p~~g~~~~d~~~i~~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~r 91 (195)
..+.|.+.-|.+|+ | |++++.++.||+.++.+++.++..+.+.++|+|++++.+|+|+|..+|.++++|++++|
T Consensus 85 l~~~l~~~~rilpg----g--~~~~s~ll~~P~~l~~ig~~la~~~~~~~iD~VvgvetkGIpLA~avA~~L~vp~vivR 158 (268)
T TIGR01743 85 LCQSLSEPERILPG----G--YLYLTDILGKPSILSKIGKILASVFAEREIDAVMTVATKGIPLAYAVASVLNVPLVIVR 158 (268)
T ss_pred HHHHHHHCCCcccC----C--eEEechhhcCHHHHHHHHHHHHHHhcCCCCCEEEEEccchHHHHHHHHHHHCCCEEEEE
Confidence 34556666666666 4 78899999999999999999999998888999999999999999999999999999999
Q ss_pred cCCCC-CCceeeeeeeecccc--eeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCc
Q 029314 92 KPKKL-PGEVISEEYSLEYGK--DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACFS 168 (195)
Q Consensus 92 k~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~ 168 (195)
|..+. ++++++.+|...+.. ..+++.+..+.+|+|||||||+++||+|+.+++++++++|++++++++++++.+.
T Consensus 159 K~~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlve~~~~-- 236 (268)
T TIGR01743 159 KDSKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDDFMKAGGTINGMINLLDEFDAEVAGIGVLIDNEGV-- 236 (268)
T ss_pred ECCCCCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEeeecccCHHHHHHHHHHHHCCCEEEEEEEEEECCCC--
Confidence 98876 677777776543322 2466766667799999999999999999999999999999999999999999742
Q ss_pred hhHHHHhhhhcCceeeEEeeccc
Q 029314 169 SYILLFSYATNGFTQFTITSEGV 191 (195)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~ 191 (195)
++.+...-+..++++.+..
T Consensus 237 ----~~~l~~~~~SL~~~~~~~~ 255 (268)
T TIGR01743 237 ----DEKLVDDYMSLLTLSNINE 255 (268)
T ss_pred ----hHHcCCCceEEEEEeeccc
Confidence 2223344566666666544
No 10
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=99.94 E-value=2e-25 Score=178.40 Aligned_cols=138 Identities=21% Similarity=0.322 Sum_probs=121.4
Q ss_pred eEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccc
Q 029314 32 MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGK 111 (195)
Q Consensus 32 ~~~d~~~i~~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~ 111 (195)
.|+|++.++.+|+.++.+++.+++.+.+.++|.|+|++.+|+++|..+|..+|+|++++||..+ +|+.
T Consensus 44 ~yiD~~~~~~~p~~~~~i~~~la~~~~~~~~d~I~g~~~~GiplA~~vA~~l~~p~v~vRK~~k------------~~g~ 111 (187)
T PRK13810 44 YYIDIKKASTDPKTLKLIARQAALRIKEMDVDTVAGVELGGVPLATAVSLETGLPLLIVRKSVK------------DYGT 111 (187)
T ss_pred EEEECchhcCCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEecCCC------------ccCC
Confidence 7999999999999999999999999988789999999999999999999999999999998765 2333
Q ss_pred eeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCchhHHHHhhhhcCceeeEEee
Q 029314 112 DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACFSSYILLFSYATNGFTQFTITS 188 (195)
Q Consensus 112 ~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (195)
+.+. .+.+.+|++|+||||++|||+|+.+++++|+++|++++++++++++.. .+++.+++.|++..+|..
T Consensus 112 ~~~~--~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr~~-----g~~~~l~~~gi~~~sl~~ 181 (187)
T PRK13810 112 GSRF--VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDREE-----GAEENLKEADVELVPLVS 181 (187)
T ss_pred CceE--EccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEEECCc-----ChHHHHHHcCCcEEEEEE
Confidence 3321 245569999999999999999999999999999999999999999873 367778999998888754
No 11
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=99.94 E-value=6.5e-25 Score=181.52 Aligned_cols=166 Identities=20% Similarity=0.267 Sum_probs=131.7
Q ss_pred hHHHHHhhcccccCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEEE
Q 029314 11 PRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPM 90 (195)
Q Consensus 11 ~~~~~l~~~~r~~~~~p~~g~~~~d~~~i~~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~ 90 (195)
++.+.|.++++..|+ | |+|++.++.||+.++.+++.+++.+.+.++|+|++++.+|+++|..+|..+|+|++++
T Consensus 67 ~~~~~l~~ri~~~~~----g--y~d~~~il~~p~~~~~v~~~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~ 140 (238)
T PRK08558 67 NLEEEVKARIKVDDE----G--YVDNSSVVFDPSFLRLIAPVVAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYA 140 (238)
T ss_pred hhHHHHHhhcccCCC----C--EEEchhhhcCHHHHHHHHHHHHHHccCCCCCEEEEECcccHHHHHHHHHHHCcCEEEE
Confidence 344555666665554 5 8999999999999999999999999877899999999999999999999999999999
Q ss_pred ecCCCCC-Cceeeeeeeec-ccc-eeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCccC
Q 029314 91 RKPKKLP-GEVISEEYSLE-YGK-DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACF 167 (195)
Q Consensus 91 rk~~~~~-~~~~~~~~~~~-~~~-~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~ 167 (195)
||.++.. +.+++ .|... .+. ..+++....+.+|++||||||+++||+|+.+++++++++||++++++++++..+.
T Consensus 141 Rk~~~~~~~~~v~-~y~s~s~~~~~~~~l~~~~l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~~~- 218 (238)
T PRK08558 141 KKSKETGVEKFYE-EYQRLASGIEVTLYLPASALKKGDRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVGEV- 218 (238)
T ss_pred EecCCCCCcceEE-EeeccCCCceeEEEecHHHcCCcCEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEEecCch-
Confidence 8865433 23333 33211 111 2355555566799999999999999999999999999999999999999988742
Q ss_pred chhHHHHh-hhhcCceeeEEee
Q 029314 168 SSYILLFS-YATNGFTQFTITS 188 (195)
Q Consensus 168 ~~~~~~~~-~~~~~~~~~~~~~ 188 (195)
+++. .++.+++..++..
T Consensus 219 ----~~~~l~~~~~vpv~sl~~ 236 (238)
T PRK08558 219 ----GIDRAREETDAPVDALYT 236 (238)
T ss_pred ----HHHHHhHhcCCCEEEEEE
Confidence 3444 4557888888764
No 12
>PRK09213 pur operon repressor; Provisional
Probab=99.94 E-value=5e-25 Score=184.60 Aligned_cols=148 Identities=25% Similarity=0.436 Sum_probs=127.3
Q ss_pred HHHHHhhcccccCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEEEe
Q 029314 12 RIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMR 91 (195)
Q Consensus 12 ~~~~l~~~~r~~~~~p~~g~~~~d~~~i~~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~r 91 (195)
..++|.+..|-.|+ | |++++.++.+|+.++.+++.+++.+.+.++|+|++++.+|+|+|..+|..+|+|++++|
T Consensus 87 L~~~L~~~~rilpG----g--f~y~sdll~~P~~l~~i~~~la~~~~~~~iD~Vvtvet~GIplA~~vA~~L~vp~vivR 160 (271)
T PRK09213 87 LCERLSEPDRILPG----G--YLYLSDLLGNPSILRKIGRIIASAFADKKIDAVMTVETKGIPLAYAVANYLNVPFVIVR 160 (271)
T ss_pred HHHHHHhCCccCCC----C--eEEeCcccCCHHHHHHHHHHHHHHhcccCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 34566666666666 4 78899999999999999999999998878999999999999999999999999999999
Q ss_pred cCCCC-CCceeeeeeeecccc--eeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCc
Q 029314 92 KPKKL-PGEVISEEYSLEYGK--DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA 165 (195)
Q Consensus 92 k~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~ 165 (195)
|..+. ++++++.+|...... ..+++++..+.+|++||||||+++||+|+.+++++++++|++++++++++++.+
T Consensus 161 K~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlVd~~~ 237 (271)
T PRK09213 161 RDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEGSRVLIVDDFMKAGGTINGMISLLKEFDAEVVGIGVLVETKE 237 (271)
T ss_pred ECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCcCEEEEEeeecccCHhHHHHHHHHHHCCCEEEEEEEEEECCC
Confidence 98775 677777666443221 246777777779999999999999999999999999999999999999999874
No 13
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=99.92 E-value=8.7e-24 Score=167.88 Aligned_cols=150 Identities=23% Similarity=0.323 Sum_probs=119.0
Q ss_pred HhhcccccCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEEEecCCC
Q 029314 16 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKK 95 (195)
Q Consensus 16 l~~~~r~~~~~p~~g~~~~d~~~i~~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~ 95 (195)
+....|++|+||.++..|++..+++.+|..++.+++.|++.+.+ ++|+|++++.+|+++|..+|+.+++|+...+|..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~i~~~k~~~dp~l~~~~~~~La~~l~~-~~d~Iv~v~~gGiplA~~lA~~L~~p~~~~~k~~~ 86 (178)
T PRK07322 8 VGGVTRELPLIRVGPDLAIALFVILGDTELTEAAAEALAKRLPT-EVDVLVTPETKGIPLAHALSRRLGKPYVVARKSRK 86 (178)
T ss_pred EcCEEeecCeeEeCCCCEEEEEhhhCCHHHHHHHHHHHHHHcCC-CCCEEEEeccCCHHHHHHHHHHHCCCEEEEEEeCC
Confidence 56788999999999877999999999999999999999999976 78999999999999999999999999988776543
Q ss_pred C--CCceeeeeeeeccccee-EEEeec--ccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCcc
Q 029314 96 L--PGEVISEEYSLEYGKDV-MEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNAC 166 (195)
Q Consensus 96 ~--~~~~~~~~~~~~~~~~~-~~~~~~--~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~ 166 (195)
. +.......+....+... +.+... ...+|++||||||+++||+|+.+++++|+++||++++++++++.+.-
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~~~~v~~~~~~ 162 (178)
T PRK07322 87 PYMQDPIIQEVVSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVSTGGTLTALERLVERAGGQVVAKAAIFAEGDA 162 (178)
T ss_pred CCCCCceEEEEEEEEeccceEEEecCccccccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEcCCC
Confidence 2 12221111111112211 222211 12589999999999999999999999999999999999999987643
No 14
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=99.92 E-value=1.7e-23 Score=169.58 Aligned_cols=140 Identities=14% Similarity=0.199 Sum_probs=118.8
Q ss_pred eEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccc
Q 029314 32 MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGK 111 (195)
Q Consensus 32 ~~~d~~~i~~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~ 111 (195)
.|+|++.++.+|+.++.+++.+++.+...++|+|+|++.+|+++|..+|..+++|+.+.||..+.++..
T Consensus 38 ~y~D~~~i~~~p~~l~~i~~~l~~~~~~~~~d~IvG~~~~Gi~~A~~vA~~l~~p~~~~RK~~K~~G~~----------- 106 (206)
T PRK13809 38 IYVDMRLVISSPEVLQTIATLIWRLRPSFNSSLLCGVPYTALTLATSISLKYNIPMVLRRKELKNVDPS----------- 106 (206)
T ss_pred EEEEChhhccCHHHHHHHHHHHHHHhccCCCCEEEEecCccHHHHHHHHHHhCCCEEEEeCCCCCCCCc-----------
Confidence 699999999999999999999999887668899999999999999999999999999999977644321
Q ss_pred eeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCchhHHHHhhhhcCceeeEEee
Q 029314 112 DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACFSSYILLFSYATNGFTQFTITS 188 (195)
Q Consensus 112 ~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (195)
+.+++ .+...+|++|+|||||+|||+|+.+++++|+++|++++++++++++.. .+...+++.|++..+|-.
T Consensus 107 ~~~~~-~g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr~~-----~~~~~l~~~gi~v~sl~~ 177 (206)
T PRK13809 107 DAIKV-EGLFTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDRQK-----GACQPLGPQGIKLSSVFT 177 (206)
T ss_pred CEEEE-ccccCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECcc-----cHHHHHHhcCCCEEEEEE
Confidence 12322 234569999999999999999999999999999999999999999762 245556777888777654
No 15
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=99.91 E-value=6.1e-23 Score=161.92 Aligned_cols=135 Identities=23% Similarity=0.318 Sum_probs=114.1
Q ss_pred eEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccc
Q 029314 32 MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGK 111 (195)
Q Consensus 32 ~~~d~~~i~~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~ 111 (195)
.|+|++.++.+|+.++.+++.|++.+ ++|+|++++.+|+++|..+|..+|+|+.+.||..+. ++.
T Consensus 30 ~y~d~~~l~~~p~~~~~l~~~l~~~~---~~d~Vvg~~~gGi~~A~~~a~~l~~p~~~~rK~~k~------------~g~ 94 (170)
T PRK13811 30 YYIDIKTAITHPALLKEIAAEVAKRY---DFDVVAGVAVGGVPLAVAVSLAAGKPYAIIRKEAKD------------HGK 94 (170)
T ss_pred EEEeCchhccCHHHHHHHHHHHHhhC---CCCEEEecCcCcHHHHHHHHHHHCCCEEEEecCCCC------------CCC
Confidence 57899999999999999999987654 689999999999999999999999999999987652 122
Q ss_pred eeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCchhHHHHhhhhcCceeeEEeec
Q 029314 112 DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACFSSYILLFSYATNGFTQFTITSE 189 (195)
Q Consensus 112 ~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (195)
..+.. +. .+|++|+||||++|||+|+.+++++|+++|++++++++++++.. .+.+.++..|++..+|...
T Consensus 95 ~~~~~--g~-~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~~vdr~~-----g~~~~l~~~gv~~~sl~~~ 164 (170)
T PRK13811 95 AGLII--GD-VKGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTVVDREQ-----GAEELLAELGITLTPLVRV 164 (170)
T ss_pred cceEE--cc-cCCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEEEEECCc-----cHHHHHHhcCCcEEEEeEH
Confidence 22111 23 48999999999999999999999999999999999999999872 3567778889998887653
No 16
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=99.91 E-value=6.1e-23 Score=162.72 Aligned_cols=136 Identities=18% Similarity=0.247 Sum_probs=115.9
Q ss_pred eEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccc
Q 029314 32 MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGK 111 (195)
Q Consensus 32 ~~~d~~~i~~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~ 111 (195)
.|+|+..+..+|+.++.+++.+++.+.+ .|+|+|++.+|+++|..+|..+++|+.+.||..+ +++.
T Consensus 31 ~yid~~~~~~~p~~~~~i~~~l~~~i~~--~d~ivg~~~ggi~lA~~lA~~l~~p~~~~rk~~k------------~yg~ 96 (176)
T PRK13812 31 YYVDKYLFETDPDCLRLIAEAFADRIDE--DTKLAGVALGAVPLVAVTSVETGVPYVIARKQAK------------EYGT 96 (176)
T ss_pred EEEeCeeccCCHHHHHHHHHHHHHHhcc--CCEEEEeecchHHHHHHHHHHHCCCEEEEeccCC------------cCCC
Confidence 6999999999999999999999998864 2899999999999999999999999999998765 2222
Q ss_pred eeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCchhHHHHhhhhcCceeeEEee
Q 029314 112 DVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACFSSYILLFSYATNGFTQFTITS 188 (195)
Q Consensus 112 ~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (195)
... ..+.+.+|++|+||||++|||+|+.++++.|+++|++++++++++++. ..+.+.++..|++.++|..
T Consensus 97 ~~~--~~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~~~vlvdr~-----~~~~~~l~~~g~~v~sL~~ 166 (176)
T PRK13812 97 GNR--IEGRLDEGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLVVVDRE-----EGARENLADHDVELEALVT 166 (176)
T ss_pred CCe--EEecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEEEEEEEECC-----cchHHHHHhcCCcEEEEEe
Confidence 221 113455899999999999999999999999999999999999999986 2356677888988888754
No 17
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=99.91 E-value=7.8e-23 Score=183.14 Aligned_cols=164 Identities=17% Similarity=0.277 Sum_probs=135.9
Q ss_pred CCCChHHHHHhhcccc----cCCCC-CCCc---eEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHH
Q 029314 7 KAQDPRIAGISSAIRV----IPDFP-KPGI---MFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPP 78 (195)
Q Consensus 7 ~~~~~~~~~l~~~~r~----~~~~p-~~g~---~~~d~~~i~~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~ 78 (195)
.++||..+.+...+.. +.+|- .+|. .|+|++.++.+|+.++.+++.+++.+.+.++|.|+|++.+|+++|..
T Consensus 282 ~~~~~~~~l~~~l~~~~al~fG~F~L~SG~~S~~YiD~~~lls~P~~l~~v~~~la~~l~~~~~D~I~Gia~gGiPlAt~ 361 (477)
T PRK05500 282 LNQHPHQDLILQLYDIGCLLFGEYVQASGATFSYYIDLRKIISNPQLFHQVLSAYAEILKNLTFDRIAGIPYGSLPTATG 361 (477)
T ss_pred cccCcHHHHHHHHHHCCCeEeCcEEECCcCcCCEEEEChhhhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHH
Confidence 4678877776665531 34444 3454 69999999999999999999999999877899999999999999999
Q ss_pred HHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEE
Q 029314 79 IALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILI 158 (195)
Q Consensus 79 la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~ 158 (195)
+|..+++|+++.||+.| ++++..+ ..+.+.+|++|||||||+|||+|+.++++.|+++|+++++++
T Consensus 362 lA~~lg~p~v~vRKe~K------------~~G~~~~--ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~ 427 (477)
T PRK05500 362 LALHLHHPMIFPRKEVK------------AHGTRRL--IEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIV 427 (477)
T ss_pred HHHHhCCCEEEEecCcC------------ccCCCce--EecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEE
Confidence 99999999999999766 2333332 224456999999999999999999999999999999999999
Q ss_pred EEEecCccCchhHHHHhhhhcCceeeEEeec
Q 029314 159 CIQMLNACFSSYILLFSYATNGFTQFTITSE 189 (195)
Q Consensus 159 ~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (195)
+++|+.. .++..+++.|++..++...
T Consensus 428 vlVDR~~-----g~~~~L~~~gv~~~Sl~tl 453 (477)
T PRK05500 428 VFIDHEQ-----GVKDKLQSHGYQAYSVLTI 453 (477)
T ss_pred EEEECCc-----chHHHHHhcCCCEEEEEEH
Confidence 9999874 4667788889888887643
No 18
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=99.90 E-value=3.6e-22 Score=161.48 Aligned_cols=138 Identities=23% Similarity=0.301 Sum_probs=117.1
Q ss_pred eEEechhhhcCHHHHHHHHHHHHHHhcCC--CccEEEEeCCcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecc
Q 029314 32 MFQDITTLLLDTKAFRDTIDLFVERYKDK--NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEY 109 (195)
Q Consensus 32 ~~~d~~~i~~~p~~~~~l~~~la~~~~~~--~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~ 109 (195)
.|+|++.++.+|+.++.+++.+++++.+. ++|+|++++.+|+++|..+|..+++|+++.+|..+. +
T Consensus 33 ~y~d~~~i~~~p~~~~~~~~~la~~i~~~~~~~d~Ivgi~~gG~~~A~~la~~L~~~~~~~rk~~~~------------~ 100 (202)
T PRK00455 33 YYFDCRKLLSYPEALALLGRFLAEAIKDSGIEFDVVAGPATGGIPLAAAVARALDLPAIFVRKEAKD------------H 100 (202)
T ss_pred eeEeChhhhcCHHHHHHHHHHHHHHHHhcCCCCCEEEecccCcHHHHHHHHHHhCCCEEEEecccCC------------C
Confidence 58999999999999999999999998764 889999999999999999999999999998875541 1
Q ss_pred cce-eEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCchhHHHHhhhhcCceeeEEee
Q 029314 110 GKD-VMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACFSSYILLFSYATNGFTQFTITS 188 (195)
Q Consensus 110 ~~~-~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (195)
+.. .++ ....+|++||||||+++||+|+.++++.|+++|++++++++++++. ..+...++..|++.++|-.
T Consensus 101 g~~~~~~---~~~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga~~v~~~vlv~~~-----~~~~~~~~~~g~~~~sl~~ 172 (202)
T PRK00455 101 GEGGQIE---GRRLFGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVIVDRQ-----SAAQEVFADAGVPLISLIT 172 (202)
T ss_pred CCCceEE---ccCCCCCEEEEEecccCCcHHHHHHHHHHHHcCCEEEEEEEEEECc-----chHHHHHHhcCCcEEEEee
Confidence 111 111 2234799999999999999999999999999999999999999986 2356678888988888764
Q ss_pred c
Q 029314 189 E 189 (195)
Q Consensus 189 ~ 189 (195)
+
T Consensus 173 ~ 173 (202)
T PRK00455 173 L 173 (202)
T ss_pred H
Confidence 3
No 19
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=99.89 E-value=5e-22 Score=157.10 Aligned_cols=139 Identities=14% Similarity=0.192 Sum_probs=115.4
Q ss_pred eEEechhhhcCHHHHHHHHHHHHHHhcC-CCccEEEEeCCcchHhHHHHHHHhCCC-----EEEEecCCCCCCceeeeee
Q 029314 32 MFQDITTLLLDTKAFRDTIDLFVERYKD-KNISVVAGIEARGFIFGPPIALAIGAK-----FVPMRKPKKLPGEVISEEY 105 (195)
Q Consensus 32 ~~~d~~~i~~~p~~~~~l~~~la~~~~~-~~~D~Iv~v~~~G~~lA~~la~~l~~p-----~~~~rk~~~~~~~~~~~~~ 105 (195)
.|+|++.++.+|+.++.+++.+++.+.+ .++|+|++++.+|+++|..+|..+++| +.+.||..+.
T Consensus 24 ~y~d~~~i~~~p~~~~~v~~~~~~~~~~~~~~d~Ivg~~~gG~~~A~~la~~l~~~~~~~~~~~~rk~~k~--------- 94 (173)
T TIGR00336 24 YYFNIKLFNTGPELANLIARYAAAIIKSHLEFDVIAGPALGGIPIATAVSVKLAKPGGDIPLCFNRKEAKD--------- 94 (173)
T ss_pred EEEECeecCChHHHHHHHHHHHHHHHHhcCCCCEEEccccChHHHHHHHHHHhcCcCCCceEEEEcCCccc---------
Confidence 6899999999999999999999998876 689999999999999999999999999 8888876542
Q ss_pred eecccceeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCchhHHHHhhhh-cCceee
Q 029314 106 SLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACFSSYILLFSYAT-NGFTQF 184 (195)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~~~-~~~~~~ 184 (195)
++...+. .+...+|++||||||+++||+|+.++++.|+++|++++++++++++... .+++.+++ .|++..
T Consensus 95 ---~g~~~~~--~g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~~~~vlvdr~~~----~~~~~l~~~~gv~~~ 165 (173)
T TIGR00336 95 ---HGEGGNI--EGELLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVAGVIIAVDRQER----SAGQEFEKEYGLPVI 165 (173)
T ss_pred ---CCCCCce--ecCCCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEEEEEEEEecCch----hHHHHHHHhcCCeEE
Confidence 1111111 1345689999999999999999999999999999999999999998731 35555554 488887
Q ss_pred EEee
Q 029314 185 TITS 188 (195)
Q Consensus 185 ~~~~ 188 (195)
++..
T Consensus 166 sl~~ 169 (173)
T TIGR00336 166 SLIT 169 (173)
T ss_pred EEEe
Confidence 7754
No 20
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=99.88 E-value=1.6e-21 Score=157.63 Aligned_cols=131 Identities=21% Similarity=0.293 Sum_probs=104.9
Q ss_pred CCCCceEEechhhhcCHHHHHHHHHHHHHHhc--CCCccEEEEeCCcchHhHHHHHHHhCCCEEEEecCCCCCCceeeee
Q 029314 27 PKPGIMFQDITTLLLDTKAFRDTIDLFVERYK--DKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEE 104 (195)
Q Consensus 27 p~~g~~~~d~~~i~~~p~~~~~l~~~la~~~~--~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~ 104 (195)
|.++-.|+|++.+..+|+.++.+++.|++.+. ..++|+|+|++.+|+++|..+|..+++|+...+++....+..
T Consensus 49 ~~~~~~yid~~~~~~~~~~l~~i~~~la~~i~~~~~~~D~Ivgi~~gG~~~A~~lA~~L~~~~~~~~~~k~~~~~~---- 124 (200)
T PRK02277 49 PAPKDIHIDWSSIGSSSSRLRYIASAMADMLEKEDEEVDVVVGIAKSGVPLATLVADELGKDLAIYHPKKWDHGEG---- 124 (200)
T ss_pred CCCCCEEEEChhhccCHHHHHHHHHHHHHHHHhcCCCCCEEEeeccCCHHHHHHHHHHhCCCcEEEeccccccccc----
Confidence 56677899999999999999999999999873 357899999999999999999999999997766543211100
Q ss_pred eeecccceeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCc
Q 029314 105 YSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA 165 (195)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~ 165 (195)
......+... ....+|++||||||++|||+|+.++++.|+++|++++++++++++++
T Consensus 125 ---~~~~~~~~~~-~~~~~gk~VlIVDDVitTG~Tl~~ai~~l~~~Ga~~v~v~vlvdk~g 181 (200)
T PRK02277 125 ---EKKTGSFSRN-FASVEGKRCVIVDDVITSGTTMKETIEYLKEHGGKPVAVVVLIDKSG 181 (200)
T ss_pred ---ccccceeccc-cccCCcCEEEEEeeccCchHHHHHHHHHHHHcCCEEEEEEEEEECcc
Confidence 0011111111 12358999999999999999999999999999999999999999874
No 21
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.88 E-value=3.1e-21 Score=154.84 Aligned_cols=147 Identities=21% Similarity=0.296 Sum_probs=123.1
Q ss_pred cCCCC-CCCc---eEEechhhhcCHHHHHHHHHHHHHHhcCC-CccEEEEeCCcchHhHHHHHHHhC-CC-EEEEecCCC
Q 029314 23 IPDFP-KPGI---MFQDITTLLLDTKAFRDTIDLFVERYKDK-NISVVAGIEARGFIFGPPIALAIG-AK-FVPMRKPKK 95 (195)
Q Consensus 23 ~~~~p-~~g~---~~~d~~~i~~~p~~~~~l~~~la~~~~~~-~~D~Iv~v~~~G~~lA~~la~~l~-~p-~~~~rk~~~ 95 (195)
+++|+ .+|. +|+|...++.+|+..+.++..+++...+. ++|+|+|++.+|+|+|..+|..+. .| +.+.||+.|
T Consensus 18 fG~f~LsSG~~SpyY~d~~~~~~~p~~~~~i~~~~a~~~~~~~~~d~v~G~a~ggiP~A~~~a~~l~~~~~~~~~Rke~K 97 (201)
T COG0461 18 FGEFTLSSGRKSPYYVDLRLFLTGPELLQLIAFALAEIIKEALEFDVVAGPALGGIPLAAATALALAHLPPMAYVRKEAK 97 (201)
T ss_pred cCceeecCCCcCCeEEecccccCCHHHHHHHHHHHHHHhhccCCCcEEEeccccchHHHHHHHHHhccCCcEEEEeceec
Confidence 66777 4455 69999999999999999999999888774 899999999999999999999993 22 677788665
Q ss_pred CCCceeeeeeeeccccee-EEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCchhHHHH
Q 029314 96 LPGEVISEEYSLEYGKDV-MEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACFSSYILLF 174 (195)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~ 174 (195)
+++... ++ +...+|++|+|||||+|||+++..+++.|+++|+.++++++++|+. ..+..
T Consensus 98 ------------~hG~~~~ie---G~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~ivDR~-----~~~~~ 157 (201)
T COG0461 98 ------------DHGTGGLIE---GGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVIVDRQ-----SGAKE 157 (201)
T ss_pred ------------cCCCcceeE---ecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEEEEEEEEecc-----hhHHH
Confidence 234322 22 3334999999999999999999999999999999999999999987 45678
Q ss_pred hhhhcCceeeEEeec
Q 029314 175 SYATNGFTQFTITSE 189 (195)
Q Consensus 175 ~~~~~~~~~~~~~~~ 189 (195)
.++..|++.++|.++
T Consensus 158 ~~~~~g~~~~sl~tl 172 (201)
T COG0461 158 VLKEYGVKLVSLVTL 172 (201)
T ss_pred HHHhcCCceEEEeeH
Confidence 899999988888765
No 22
>PRK06031 phosphoribosyltransferase; Provisional
Probab=99.87 E-value=3.1e-21 Score=158.99 Aligned_cols=157 Identities=18% Similarity=0.296 Sum_probs=113.3
Q ss_pred HHHHhhcccccCCCCCCCceEEechhhhcCH---HHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCC-EE
Q 029314 13 IAGISSAIRVIPDFPKPGIMFQDITTLLLDT---KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAK-FV 88 (195)
Q Consensus 13 ~~~l~~~~r~~~~~p~~g~~~~d~~~i~~~p---~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p-~~ 88 (195)
-..|...+|.+|++| .|++.++.++ +.++.+++.|++++.+.++|+|+|++.+|+++|..+|+++|++ ++
T Consensus 39 ~~~l~~~~r~~~~~~------~~i~~ll~~~~~~~~~~~la~~La~~~~~~~~DvIVgv~~~Gi~lA~~lA~~Lg~~~~v 112 (233)
T PRK06031 39 GRQLLLPIRGLPDGD------RALASLIVNQASFEVLDALAEHLAEKARAFDPDVVAGLPTLGLTLAAAVARKLGHTRYV 112 (233)
T ss_pred CCEeccCcEECCCCC------CchhhHhCChhHHHHHHHHHHHHHHHcccCCCcEEEEeccCCHHHHHHHHHHHCCCCce
Confidence 445677788888754 5899999998 5556799999999877789999999999999999999999975 44
Q ss_pred EEecCCCCCC-ceee---eeeeecccceeEEEeec--ccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEe
Q 029314 89 PMRKPKKLPG-EVIS---EEYSLEYGKDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQM 162 (195)
Q Consensus 89 ~~rk~~~~~~-~~~~---~~~~~~~~~~~~~~~~~--~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~ 162 (195)
.+++.++... .... .++........+.+... ...+|+|||||||+++||+|+.+++++|+++|+++++++++++
T Consensus 113 pl~~~rK~~~~~~l~~~~~sitt~~~~~~~~l~~~~~~~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~Vvgv~v~v~ 192 (233)
T PRK06031 113 PLGTSRKFWYRDELSVPLSSITTPDQGKRLYIDPRMLPLLEGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGAAML 192 (233)
T ss_pred EEEEccccccccccccceeeeeccCccceEEecccccccCCCCEEEEEEeEccccHHHHHHHHHHHHcCCeEEEEEEEEE
Confidence 4444333210 0000 01100011122333322 2358999999999999999999999999999999999999998
Q ss_pred cCccCchhHHHHhhhhcC
Q 029314 163 LNACFSSYILLFSYATNG 180 (195)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~ 180 (195)
... ..+..++..|
T Consensus 193 ~g~-----~~~~~l~~~~ 205 (233)
T PRK06031 193 QSE-----RWRESLAAAG 205 (233)
T ss_pred ccc-----cHHHHHHhcC
Confidence 874 3455555544
No 23
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=99.87 E-value=5.8e-21 Score=152.81 Aligned_cols=117 Identities=26% Similarity=0.393 Sum_probs=101.4
Q ss_pred eEEechhhhcCHHHHHHHHHHHHHHhcCC--CccEEEEeCCcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecc
Q 029314 32 MFQDITTLLLDTKAFRDTIDLFVERYKDK--NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEY 109 (195)
Q Consensus 32 ~~~d~~~i~~~p~~~~~l~~~la~~~~~~--~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~ 109 (195)
.|+|++.++.+|+.++.+++.|++++.+. ++|+|++++.+|+++|..+|.++++|+++.+|... .
T Consensus 27 ~yid~~~l~~~p~~~~~~~~~La~~i~~~~~~~d~Ivgi~~gGi~~A~~la~~L~~~~i~~~k~~~---~---------- 93 (187)
T TIGR01367 27 YFLQSATLLEHPEALMELGGELAQKILDYGLKVDFIVGPAMGGVILGYEVARQLSVRSIFAEREGG---G---------- 93 (187)
T ss_pred eeEechhhhcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEccCcHHHHHHHHHHhCCCeEEEEEeCC---c----------
Confidence 59999999999999999999999998754 78999999999999999999999999988766431 0
Q ss_pred cceeEEEeec-ccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCc
Q 029314 110 GKDVMEMHVG-AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA 165 (195)
Q Consensus 110 ~~~~~~~~~~-~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~ 165 (195)
..+..+ .+.+|++|||||||++||+|+.++++.|+++|++++++++++++..
T Consensus 94 ----~~~~~~~~l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv~~~vlid~~~ 146 (187)
T TIGR01367 94 ----MKLRRGFAVKPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVVGLACIIDRSQ 146 (187)
T ss_pred ----EEEeecccCCCCCEEEEEEeeecchHHHHHHHHHHHHcCCeEEEEEEEEECcC
Confidence 111111 2358999999999999999999999999999999999999999873
No 24
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=99.83 E-value=6.8e-20 Score=136.14 Aligned_cols=122 Identities=26% Similarity=0.357 Sum_probs=91.4
Q ss_pred hhhcCHHHHHHHHHHHHHHhcC--CCccEEEEeCCcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEE
Q 029314 38 TLLLDTKAFRDTIDLFVERYKD--KNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVME 115 (195)
Q Consensus 38 ~i~~~p~~~~~l~~~la~~~~~--~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~ 115 (195)
+++.+++.++.+++.+++++.+ .++|.|+|++++|+++|..+|..++.|+....+....... .. ............
T Consensus 2 ~i~~~~~~~~~~~~~la~~i~~~~~~~~~ivgi~~~G~~~a~~la~~l~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~ 79 (125)
T PF00156_consen 2 KIILSPEQIEALAERLAEQIKESGFDFDVIVGIPRGGIPLAAALARALGIPLVFVRKRKSYYPG-SD-KTSREKNNQELF 79 (125)
T ss_dssp EEEEBHHHHHHHHHHHHHHHHHHTTTSSEEEEETTTTHHHHHHHHHHHTHEEEEEEEEEEEESE-EE-EEEEETEEEEEE
T ss_pred EEEEcHHHHHHHHHHHHHHHHHhCCCCCEEEeehhccHHHHHHHHHHhCCCccceeeeeccccc-ch-hhhhccCceEEe
Confidence 4677899999999999998875 4667899999999999999999999999776543210000 00 000011111122
Q ss_pred EeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEE
Q 029314 116 MHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQ 161 (195)
Q Consensus 116 ~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv 161 (195)
.......+|++||||||+++||+|+.++++.|+++|++++.+++++
T Consensus 80 ~~~~~~~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~~vl~ 125 (125)
T PF00156_consen 80 IIDKEDIKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGVAVLV 125 (125)
T ss_dssp EEESSSGTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEEEEEE
T ss_pred ecccccccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 2223456999999999999999999999999999999999999875
No 25
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=99.79 E-value=2.4e-18 Score=133.63 Aligned_cols=125 Identities=20% Similarity=0.279 Sum_probs=100.7
Q ss_pred eEEechhhhcCHHHHHHHHHHHHHH-hc--CCCccEEEEeCCcchHhHHHHHHHhCCCEEEE--ecCCCCCCceeeeeee
Q 029314 32 MFQDITTLLLDTKAFRDTIDLFVER-YK--DKNISVVAGIEARGFIFGPPIALAIGAKFVPM--RKPKKLPGEVISEEYS 106 (195)
Q Consensus 32 ~~~d~~~i~~~p~~~~~l~~~la~~-~~--~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~--rk~~~~~~~~~~~~~~ 106 (195)
.|+||+.+-..+..+++++..|++. +. ..++|+|+|+...|+|+|+.+|..+|..+... ||.++..+.-.
T Consensus 54 i~i~W~siG~s~sRl~~Is~am~Dm~m~~~~~evDvVvGIa~sGvPlAtmvA~elg~elaiY~PrK~~~de~~~~----- 128 (203)
T COG0856 54 IKIDWRSIGKSGSRLRYISEAMADMIMEKVSFEVDVVVGIAISGVPLATMVAYELGKELAIYHPRKHRKDEGAGK----- 128 (203)
T ss_pred eEEechhhccchHHHHHHHHHHHHHHHHhccceeEEEEEEeecCccHHHHHHHHhCCceEEEecccccccccCCc-----
Confidence 6899999999999999999999983 33 36899999999999999999999999998653 44443211100
Q ss_pred ecccceeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCcc
Q 029314 107 LEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNAC 166 (195)
Q Consensus 107 ~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~ 166 (195)
.+.|.-+ ..-+.||+|+||||++|||+|+.++++.|++.|++.+.|.++++|.+.
T Consensus 129 ----~G~iS~N-Fa~V~gK~cvIVDDvittG~Ti~E~Ie~lke~g~kpv~v~VL~dK~G~ 183 (203)
T COG0856 129 ----GGSISSN-FASVEGKRCVIVDDVITTGSTIKETIEQLKEEGGKPVLVVVLADKKGV 183 (203)
T ss_pred ----Cceeecc-cccccCceEEEEecccccChhHHHHHHHHHHcCCCcEEEEEEEccCCc
Confidence 0112111 123599999999999999999999999999999999999999999875
No 26
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.71 E-value=2.6e-16 Score=125.31 Aligned_cols=118 Identities=14% Similarity=0.159 Sum_probs=83.2
Q ss_pred hhcCHHHHHHHHHHHHHHhcC---CCccEEEEeCCcchHhHHHHHHHhCCCEE--EEec-CCCCCCceeeeeeeecccce
Q 029314 39 LLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAKFV--PMRK-PKKLPGEVISEEYSLEYGKD 112 (195)
Q Consensus 39 i~~~p~~~~~l~~~la~~~~~---~~~D~Iv~v~~~G~~lA~~la~~l~~p~~--~~rk-~~~~~~~~~~~~~~~~~~~~ 112 (195)
++.+.+.+....+.|+.++.+ .+.++|+++..+|+++|..+|+.+++|+. .+++ +.+..+. . ..-
T Consensus 15 ~~~s~~~i~~~i~~la~~i~~~~~~~~~viV~i~~gg~~~A~~La~~l~~~~~~~~l~~~~~~~~~~--~-------~~~ 85 (181)
T PRK09162 15 CLVSAAEVEAAIDRMADEITADLADENPLVLCVMGGGLVFTGQLLPRLDFPLEFDYLHATRYRNETT--G-------GEL 85 (181)
T ss_pred EeecHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCcHHHHHHHHHHcCCCcccCEEEEEecCCCcc--C-------Cce
Confidence 344556665555555555432 24469999999999999999999999863 2222 2211100 0 000
Q ss_pred eEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCc
Q 029314 113 VMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA 165 (195)
Q Consensus 113 ~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~ 165 (195)
.+.......++||+|||||||+|||+|+.++++.|+++|++.|.++++++++.
T Consensus 86 ~~~~~~~~~v~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga~~V~~avL~~k~~ 138 (181)
T PRK09162 86 VWKVKPRESLKGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSAVLVDKTH 138 (181)
T ss_pred eEecCCCCCCCCCEEEEEccccCcHHHHHHHHHHHHhCCCCEEEEEEEEEcCc
Confidence 11111122369999999999999999999999999999999999999999864
No 27
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=99.70 E-value=3e-17 Score=134.89 Aligned_cols=123 Identities=19% Similarity=0.207 Sum_probs=89.2
Q ss_pred hcCHHHHHHHHHHHHHHhc--CCCccEEEEeC-------CcchHhHHHHHHHh----CCCEEEEecCCCCCCceeeeeee
Q 029314 40 LLDTKAFRDTIDLFVERYK--DKNISVVAGIE-------ARGFIFGPPIALAI----GAKFVPMRKPKKLPGEVISEEYS 106 (195)
Q Consensus 40 ~~~p~~~~~l~~~la~~~~--~~~~D~Iv~v~-------~~G~~lA~~la~~l----~~p~~~~rk~~~~~~~~~~~~~~ 106 (195)
..+....+.+++.|...+. ...+|.||+|| +|||..+..|++.+ +.|+...+++.+.++...+...+
T Consensus 88 ~~~~~l~~~la~~l~~~~~~~~~~~~~iVpVPls~~r~~~RGFNQ~~~la~~l~~~~~~~~~~~r~k~~~~q~~l~~~~r 167 (225)
T COG1040 88 QGDLDLAKLLARLLAKALDDFLEKPDLIVPVPLSPSRLLERGFNQSELLARALARRLGKPIALRRVKDTSPQQGLKALER 167 (225)
T ss_pred CCchhHHHHHHHHHHHHHhhccccCCeEEEecCCHHHHHHcCCCHHHHHHHHHHHHhCchHHHHHHhccccccccchHHH
Confidence 3456666777888877776 35789999998 69998777777766 45543334344434444443334
Q ss_pred ecccceeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEec
Q 029314 107 LEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQML 163 (195)
Q Consensus 107 ~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~ 163 (195)
..+.++.|.+..+.. ..++|+|||||+|||+|+.++.+.|++.|++.|.+++++..
T Consensus 168 r~nl~~aF~~~~~~~-~~~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~~lar~ 223 (225)
T COG1040 168 RRNLKGAFRLKKGIE-EPKNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVLTLARA 223 (225)
T ss_pred HHhccCCeecCCCCC-CCCeEEEEecccccHHHHHHHHHHHHHcCCceEEEEEEEec
Confidence 445666776654433 22899999999999999999999999999999999999854
No 28
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=99.70 E-value=6.3e-17 Score=129.62 Aligned_cols=119 Identities=17% Similarity=0.193 Sum_probs=81.8
Q ss_pred cCHHHHHHHHHHHHHHhcC---CCccEEEEeC-------CcchHhHHHHHHHh----CC-CEEEEecCCCCCCceeeeee
Q 029314 41 LDTKAFRDTIDLFVERYKD---KNISVVAGIE-------ARGFIFGPPIALAI----GA-KFVPMRKPKKLPGEVISEEY 105 (195)
Q Consensus 41 ~~p~~~~~l~~~la~~~~~---~~~D~Iv~v~-------~~G~~lA~~la~~l----~~-p~~~~rk~~~~~~~~~~~~~ 105 (195)
.+..+.+.+++.++..+.. ..+|.|++|| .|||..+..|++.+ ++ .....|.+. .++...+...
T Consensus 56 ~~~~l~~~l~~~l~~~~~~~~~~~~~~ivpVP~~~~r~~~RGfnq~~~la~~l~~~~~~~~~~l~r~~~-~~Q~~l~~~~ 134 (190)
T TIGR00201 56 GQAEIIRALASLLSLTVSKAYRDLPDVIVPVPLSKEREWRRGFNQADLLAQCLSRWLFNYHNIVIRLNN-ETQSKLKATL 134 (190)
T ss_pred CChHHHHHHHHHHHHHHHhhccCCCCEEEeCCCCHHHHHHhCCCHHHHHHHHHHHHhCCCcceEEEecc-cccccCCHHH
Confidence 3556667777777665432 2368999998 59996666665554 43 112223333 3333333333
Q ss_pred eecccceeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEE
Q 029314 106 SLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQ 161 (195)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv 161 (195)
|..+.++.|.+... .++|++|||||||+|||+|+.++++.|+++|++.|.+++++
T Consensus 135 R~~n~~~~f~~~~~-~~~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~~la 189 (190)
T TIGR00201 135 RFLNLENAFDLKNN-SFQGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVWTLA 189 (190)
T ss_pred HHHHHhCcEEccCC-CCCCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 43455566765433 35899999999999999999999999999999999999986
No 29
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.70 E-value=3.7e-16 Score=122.85 Aligned_cols=119 Identities=18% Similarity=0.184 Sum_probs=83.8
Q ss_pred hcCHHHHHHHHHHHHHHhcC---CCccEEEEeCCcchHhHHHHHHHhCCCEEE--EecC-CCCCCceeeeeeeeccccee
Q 029314 40 LLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKP-KKLPGEVISEEYSLEYGKDV 113 (195)
Q Consensus 40 ~~~p~~~~~l~~~la~~~~~---~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~--~rk~-~~~~~~~~~~~~~~~~~~~~ 113 (195)
+.+.+.++..++.|++++.+ .++++|+++.+||+++|..+++.+++|... +... .. ... + ..+...
T Consensus 2 lis~~~i~~~i~~lA~~I~~~~~~~~~vvv~i~~GG~~~a~~l~~~L~~~~~v~~i~~~~Y~-~~~------~-~~~~~~ 73 (166)
T TIGR01203 2 LIPEEQIKARIAELAKQITEDYAGKPLVLLCVLKGSFPFFADLIRYIAVPVQVDFMAVSSYG-NGM------Q-SSGDVK 73 (166)
T ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEccCCHHHHHHHHHhcCCCceeeEEEEeecc-CCC------c-ccCceE
Confidence 34566666666777666543 246799999999999999999999987532 2211 00 000 0 001001
Q ss_pred EEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCcc
Q 029314 114 MEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNAC 166 (195)
Q Consensus 114 ~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~ 166 (195)
........++||+|||||||++||.|+.++++.|++.|++.+.++++++++..
T Consensus 74 ~~~~~~~~~~gk~vlivDDii~TG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~ 126 (166)
T TIGR01203 74 ILKDLDLSIKGKDVLIVEDIVDTGLTLQYLLDLLKARKPKSLKIVTLLDKPSR 126 (166)
T ss_pred EecCCCCCCCCCEEEEEeeeeCcHHHHHHHHHHHHHCCCCEEEEEEEEecCcc
Confidence 11111223589999999999999999999999999999999999999999653
No 30
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=99.66 E-value=1.7e-15 Score=121.45 Aligned_cols=119 Identities=20% Similarity=0.250 Sum_probs=86.5
Q ss_pred hhhcCHHHHHHHHHHHHHHhcC---CCccEEEEeCCcchHhHHHHHHHhCC---CEE--EEecCCCCCCceeeeeeeecc
Q 029314 38 TLLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGA---KFV--PMRKPKKLPGEVISEEYSLEY 109 (195)
Q Consensus 38 ~i~~~p~~~~~l~~~la~~~~~---~~~D~Iv~v~~~G~~lA~~la~~l~~---p~~--~~rk~~~~~~~~~~~~~~~~~ 109 (195)
.++.+.+.++...+.|++++.+ ...++|+|+.+||+++|..|++.++. |+. +++.... ... ..
T Consensus 9 ~~lis~~~I~~~i~~lA~~I~~~~~~~~~vivgi~~Gg~~fa~~L~~~L~~~~~~~~i~fi~~~sy-~~~--------~~ 79 (189)
T PLN02238 9 KVLWTAEDISARVAELAAQIASDYAGKSPVVLGVATGAFMFLADLVRAIQPLPRGLTVDFIRASSY-GGG--------TE 79 (189)
T ss_pred EEEcCHHHHHHHHHHHHHHHHHHcCCCCcEEEEEccCCHHHHHHHHHHhCccCCCeEEEEEEeeec-CCC--------cc
Confidence 4566677776666666666543 24589999999999999999999998 653 3332211 000 00
Q ss_pred cceeEEEee---cccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCc
Q 029314 110 GKDVMEMHV---GAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA 165 (195)
Q Consensus 110 ~~~~~~~~~---~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~ 165 (195)
.++...+.. ...++|++|||||||+|||.|+.++++.|++.|++.+.++++++++.
T Consensus 80 ~~g~~~i~~~~~~~~v~gk~VliVDDIidTG~Tl~~~~~~l~~~g~~~v~~avL~dK~~ 138 (189)
T PLN02238 80 SSGVAKVSGADLKIDVKGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVSVCALLDKRA 138 (189)
T ss_pred ccCceeEecCCCCCCCCCCEEEEEecccchHHHHHHHHHHHHhCCCCEEEEEEEEECCc
Confidence 111122222 12369999999999999999999999999999999999999999975
No 31
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=99.66 E-value=1.4e-15 Score=118.50 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=84.4
Q ss_pred hhcCHHHHHHHHHHHHHHhcCC-CccEEEEeCCcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEe
Q 029314 39 LLLDTKAFRDTIDLFVERYKDK-NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMH 117 (195)
Q Consensus 39 i~~~p~~~~~l~~~la~~~~~~-~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (195)
++.+.+.++..++.|++++.+. ++|+|+|+++||+++|..|++++++|++..-+ ..+|..+ .++..++.
T Consensus 8 ~~is~~~i~~~i~~la~~I~~~~~~d~vvgv~~GG~~fa~~L~~~L~~~~v~~i~---------~ssY~~~-~~~~~~~~ 77 (156)
T PRK09177 8 FPVSWDQLHRDARALAWRLLPAGQWKGIIAVTRGGLVPAAILARELGIRLVDTVC---------ISSYDHD-NQGELKVL 77 (156)
T ss_pred EEcCHHHHHHHHHHHHHHHHhhCCCCEEEEEecCCeehHHHHHHHcCCCceeEEE---------EEEECCC-cCCcEEEe
Confidence 3567888888899999888643 58999999999999999999999999642111 0112111 12223333
Q ss_pred ecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCcc
Q 029314 118 VGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNAC 166 (195)
Q Consensus 118 ~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~ 166 (195)
.+...+|++|||||||++||.|++++.+.+++ +.++++.+|+..
T Consensus 78 ~~~~~~gk~VLIVDDIiDTG~Tl~~v~~~l~~-----v~~a~l~~K~~~ 121 (156)
T PRK09177 78 KRAEGDGEGFLVVDDLVDTGGTARAVREMYPK-----AHFATVYAKPAG 121 (156)
T ss_pred cCCCcCcCEEEEEeeeeCCHHHHHHHHHHHhh-----CCEEEEEECcCC
Confidence 34346999999999999999999999999974 578888888753
No 32
>PRK11595 DNA utilization protein GntX; Provisional
Probab=99.64 E-value=2.1e-15 Score=124.10 Aligned_cols=121 Identities=18% Similarity=0.216 Sum_probs=83.3
Q ss_pred hcCHHHHHHHHHHHHHHhc------C-CCccEEEEeC-------CcchHh----HHHHHHHhCCCEE---EEecCCCCCC
Q 029314 40 LLDTKAFRDTIDLFVERYK------D-KNISVVAGIE-------ARGFIF----GPPIALAIGAKFV---PMRKPKKLPG 98 (195)
Q Consensus 40 ~~~p~~~~~l~~~la~~~~------~-~~~D~Iv~v~-------~~G~~l----A~~la~~l~~p~~---~~rk~~~~~~ 98 (195)
..+..+.+.+++.|++.+. . ..+|.|++|| +|||.. |..++..+++|+. ..|.+.+.++
T Consensus 84 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~d~ivpVPl~~~r~~~RGfnq~~~la~~la~~~~~~~~~~~l~r~~~~~~q 163 (227)
T PRK11595 84 SRRSELASVLARLLLLEWLQARRSTGLQKPDRIISVPLHQRRHWRRGFNQSDLLCRPLARWLGCDYDSEALTRTRATATQ 163 (227)
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEecCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCcccceEEecCCCCc
Confidence 3466667777777765431 1 2578999998 579954 5556667788863 2333332233
Q ss_pred ceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEe
Q 029314 99 EVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQM 162 (195)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~ 162 (195)
...+...+..+.++.|.+. . .++|++|||||||+|||+|+.++++.|+++|++.|.+++++.
T Consensus 164 ~~l~~~~R~~n~~~~f~~~-~-~~~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~~V~~~~la~ 225 (227)
T PRK11595 164 HFLSARLRKRNLKNAFRLE-L-PVQGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASVQVWCLCR 225 (227)
T ss_pred ccCCHHHHhhhhhhhhccC-C-CCCCCEEEEEeeeecchHHHHHHHHHHHHcCCcEEEEEEEEe
Confidence 3333333333444455443 2 258999999999999999999999999999999999999974
No 33
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.62 E-value=9.4e-15 Score=116.07 Aligned_cols=118 Identities=14% Similarity=0.218 Sum_probs=85.5
Q ss_pred hhhcCHHHHHHHHHHHHHHhcC----C-CccEEEEeCCcchHhHHHHHHHhCCCEE--EEecCCCCCCceeeeeeeec-c
Q 029314 38 TLLLDTKAFRDTIDLFVERYKD----K-NISVVAGIEARGFIFGPPIALAIGAKFV--PMRKPKKLPGEVISEEYSLE-Y 109 (195)
Q Consensus 38 ~i~~~p~~~~~l~~~la~~~~~----~-~~D~Iv~v~~~G~~lA~~la~~l~~p~~--~~rk~~~~~~~~~~~~~~~~-~ 109 (195)
.++.+.+.++...+.|+.++.+ . ...+++|+.+||+.+|..|++.++.|.. +++.. +|+.. .
T Consensus 6 ~~l~~~~~i~~~i~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l~~s----------sY~~~~~ 75 (178)
T PRK15423 6 EVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTAS----------SYGSGMS 75 (178)
T ss_pred EEecCHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhCCCcceeEEEEE----------EecCCCc
Confidence 3556677776666666665532 1 2359999999999999999999999853 33321 11100 0
Q ss_pred cceeEEEee--cccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCc
Q 029314 110 GKDVMEMHV--GAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA 165 (195)
Q Consensus 110 ~~~~~~~~~--~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~ 165 (195)
..+...+.. ...++||+|||||||++||.||.++.+.|++.|++.+.++++++|+.
T Consensus 76 ~~~~v~i~~~~~~~v~gk~VLlVDDIiDTG~TL~~l~~~l~~~~~~~v~~avL~~K~~ 133 (178)
T PRK15423 76 TTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPS 133 (178)
T ss_pred ccCceEEecCCCCCCCCCEEEEEeeecCchHHHHHHHHHHHhCCCCEEEEEEEEECCC
Confidence 111122222 22469999999999999999999999999999999999999999985
No 34
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.60 E-value=1.8e-14 Score=117.08 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=84.9
Q ss_pred hhhcCHHHHHHHHHHHHHHhcC---------CCccEEEEeCCcchHhHHHHHHHhC---CCEEE--EecCCCCCCceeee
Q 029314 38 TLLLDTKAFRDTIDLFVERYKD---------KNISVVAGIEARGFIFGPPIALAIG---AKFVP--MRKPKKLPGEVISE 103 (195)
Q Consensus 38 ~i~~~p~~~~~l~~~la~~~~~---------~~~D~Iv~v~~~G~~lA~~la~~l~---~p~~~--~rk~~~~~~~~~~~ 103 (195)
.++.+.+.++...+.||.++.+ .++++|+|+.+||++||..|+++++ .|+.+ ++- .
T Consensus 25 ~~lis~e~I~~~i~~LA~~I~~~~~~~~~~~~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~v----------s 94 (211)
T PTZ00271 25 HTLVTQEQVWAATAKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICA----------S 94 (211)
T ss_pred cEecCHHHHHHHHHHHHHHHHHHhhhccccCCCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEE----------E
Confidence 4456777776666666655432 1366899999999999999999996 55422 111 1
Q ss_pred eeee-cccceeEEEee--cccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCcc
Q 029314 104 EYSL-EYGKDVMEMHV--GAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNAC 166 (195)
Q Consensus 104 ~~~~-~~~~~~~~~~~--~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~ 166 (195)
+|+. ....+.+.+.. ...++||+|||||||++||.||+++.+.|++.+++.+.++++++|+..
T Consensus 95 sY~~~~~s~g~~~i~~~~~~~i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p~svk~avL~dK~~~ 160 (211)
T PTZ00271 95 SYGTGVETSGQVRMLLDVRDSVENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDKPSG 160 (211)
T ss_pred ecCCCCcccCceEEecCCCCCCCCCEEEEEecccCCHHHHHHHHHHHHhcCCCEEEEEEEEEcccC
Confidence 2211 11112222221 223699999999999999999999999999999999999999999654
No 35
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.59 E-value=1.2e-14 Score=115.16 Aligned_cols=119 Identities=20% Similarity=0.265 Sum_probs=83.8
Q ss_pred hhhcCHHHHHHHHHHHHHHhcC----CCccEEEEeCCcchHhHHHHHHHh----CCCE--EEEecC-CCCCCceeeeeee
Q 029314 38 TLLLDTKAFRDTIDLFVERYKD----KNISVVAGIEARGFIFGPPIALAI----GAKF--VPMRKP-KKLPGEVISEEYS 106 (195)
Q Consensus 38 ~i~~~p~~~~~l~~~la~~~~~----~~~D~Iv~v~~~G~~lA~~la~~l----~~p~--~~~rk~-~~~~~~~~~~~~~ 106 (195)
.++.+++.++...+.|+.++.+ .+.++|+|+.+||+++|..+++.+ +.|+ ..++.. .+....
T Consensus 4 ~~l~s~~~i~~~i~~la~~i~~~~~~~~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~~~------- 76 (176)
T PRK05205 4 KEILDAEALRRALTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDLT------- 76 (176)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEEEeecCcc-------
Confidence 3566788888888888877643 246799999999999999999999 5443 222211 100000
Q ss_pred eccccee-EE-EeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcC-CcEEEEEEEEecC
Q 029314 107 LEYGKDV-ME-MHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQ-NHIFILICIQMLN 164 (195)
Q Consensus 107 ~~~~~~~-~~-~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~G-a~~V~~~~lv~~~ 164 (195)
..+... .. ......++|++|||||||++||+|+.++++.|++.| ++.+.++++++|+
T Consensus 77 -~~~~~~~~~~~~l~~~v~gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v~~avL~~K~ 136 (176)
T PRK05205 77 -KKGLHPQVKPTDIPFDIEGKRVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVLVDRG 136 (176)
T ss_pred -ccCcccccccccCCCCCCCCEEEEEecccCcHHHHHHHHHHHHhcCCCcEEEEEEEEECC
Confidence 000000 00 001123599999999999999999999999999999 7999999999974
No 36
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.58 E-value=1.2e-14 Score=130.11 Aligned_cols=115 Identities=16% Similarity=0.159 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCE--EEEecCCCCCCceeeeeeeecccceeEEEee-ccc
Q 029314 45 AFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKF--VPMRKPKKLPGEVISEEYSLEYGKDVMEMHV-GAV 121 (195)
Q Consensus 45 ~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~--~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 121 (195)
.-..+++.|++.+.. +.|+|+++|..|+++|..+|+.+|+|+ .+.||+.. .+..+....+..+....+.+.. ...
T Consensus 260 ~R~~~G~~La~~~~~-~~d~Vv~vPd~g~~~A~~~A~~lgip~~~~l~rk~~~-~r~~i~~~qr~rn~~~~~~~~~~~~~ 337 (445)
T PRK08525 260 VRKKMGEELAKKFPI-KADFVVPVPDSGVPAAIGYAQESGIPFEMAIVRNHYV-GRTFIEPTQEMRNLKVKLKLNPMSKV 337 (445)
T ss_pred HHHHHHHHHHHHhcc-cCCeEEECCchHHHHHHHHHHHhCCCccceEEEeecc-ccccCCHHHHHHhhheeEEecccccc
Confidence 445788888887764 678999999999999999999999998 44555421 1111111111122223343332 233
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEE
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQ 161 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv 161 (195)
++||+|+||||++|||+|+.++++.|+++||+.|.+++..
T Consensus 338 v~gK~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~~~h 377 (445)
T PRK08525 338 LEGKRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLRIAC 377 (445)
T ss_pred cCCCeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEEEEC
Confidence 6899999999999999999999999999999999888774
No 37
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.58 E-value=3e-14 Score=117.81 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=89.4
Q ss_pred echhhhcCHHHHHHHHHHHHHHhcC---CCccEEEEeCCcchHhHHHHHHHhCCCEEEEecCCCCCC---ceee-eeeee
Q 029314 35 DITTLLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPG---EVIS-EEYSL 107 (195)
Q Consensus 35 d~~~i~~~p~~~~~l~~~la~~~~~---~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~---~~~~-~~~~~ 107 (195)
++..++.+.+.++.-.+.||.++.+ .+..+|+|+..||+.|+..|.+.++............+- .++. .+|+.
T Consensus 52 ~~~~vLis~~~I~~rI~~LA~~I~~dy~~~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~vsSY~~ 131 (241)
T PTZ00149 52 YLTKILLPNGLIKDRVEKLAYDIKQVYGNEELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRVKSYCN 131 (241)
T ss_pred cccEEEeCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEEEEccC
Confidence 3456778888888777777776643 244599999999999999999998721100000000001 2221 23322
Q ss_pred cccceeEEEeec--ccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCc
Q 029314 108 EYGKDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA 165 (195)
Q Consensus 108 ~~~~~~~~~~~~--~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~ 165 (195)
....+.+.+... ..++||+|||||||++||.|+.++++.|++.|++.+.++++++++.
T Consensus 132 ~~s~g~v~i~~~~~~~l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~~~V~va~L~~K~~ 191 (241)
T PTZ00149 132 DESTGKLEIVSDDLSCLKDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKTIRIATLFEKRT 191 (241)
T ss_pred CCcCCceEEecccccccCCCEEEEEEeEeChHHHHHHHHHHHHhcCCCEEEEEEEEecCc
Confidence 222222333222 2369999999999999999999999999999999999999999875
No 38
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.57 E-value=1e-13 Score=118.55 Aligned_cols=110 Identities=23% Similarity=0.247 Sum_probs=82.2
Q ss_pred ccEEEEeCCcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchHHHH
Q 029314 62 ISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLS 141 (195)
Q Consensus 62 ~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~ 141 (195)
.++|++++.||..+|..+|+.+++|+.+++|++..... .......+..++||+|+|||||+|||+|+.
T Consensus 161 ~~vVVsPd~g~~~~a~~la~~l~~~~~~~~K~R~~~~~------------~~~~~~~~~~v~Gr~vIIVDDIidTG~Tl~ 228 (301)
T PRK07199 161 RPLLIGPDEESEQWVAAVAERAGAPHAVLRKTRHGDRD------------VEISLPDAAPWAGRTPVLVDDIVSTGRTLI 228 (301)
T ss_pred CcEEEEeCCChHHHHHHHHHHhCCCEEEEEEEecCCCe------------EEEEeccCcccCCCEEEEEecccCcHHHHH
Confidence 35899999999999999999999999888775431110 001111123359999999999999999999
Q ss_pred HHHHHHhhcCCcEEEEEEEEecCccCchhHHHHhhhhcCceeeEEe
Q 029314 142 AAIRLLGSFQNHIFILICIQMLNACFSSYILLFSYATNGFTQFTIT 187 (195)
Q Consensus 142 ~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (195)
++++.|+++||+.+.+++. .+.++. .+...+++.++..+-.|
T Consensus 229 ~aa~~Lk~~GA~~V~~~~t---Hgvfs~-~a~~~l~~~~i~~iv~T 270 (301)
T PRK07199 229 EAARQLRAAGAASPDCVVV---HALFAG-DAYSALAAAGIARVVST 270 (301)
T ss_pred HHHHHHHHCCCcEEEEEEE---eeeCCh-HHHHHHHhCCCCEEEEe
Confidence 9999999999999999988 445543 34555666666665444
No 39
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.55 E-value=1.9e-14 Score=130.61 Aligned_cols=117 Identities=14% Similarity=0.106 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEE--EecCCCCCC-ceeeeeeeecccceeEEEeecc
Q 029314 44 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPG-EVISEEYSLEYGKDVMEMHVGA 120 (195)
Q Consensus 44 ~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~--~rk~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 120 (195)
.+.+.+++.+...+...+.|+|+++|..+..+|..+|+.+++|+.. ++++..... ....+..|..+.+..|.... .
T Consensus 276 ~lg~~LA~~l~~~~~~~~~D~VvpVP~s~~~~A~~la~~lgip~~~~l~k~~~~~rt~i~~~q~~R~~~vr~~f~~~~-~ 354 (501)
T PRK09246 276 RMGEKLAEKIKREWPDLDIDVVIPIPDTSRDAALEIARILGVPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIR-A 354 (501)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCccHHHHHHHHHHHHCCCccceEEEEecccccccCcCHHHHHHHHHhhcCCcc-c
Confidence 3444555555444443457999999999999999999999999853 333221110 00011112122233343222 2
Q ss_pred cCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEE
Q 029314 121 VQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQ 161 (195)
Q Consensus 121 ~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv 161 (195)
.++||+||||||++|||+|+++++++|+++||+.|.+++++
T Consensus 355 ~v~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~a 395 (501)
T PRK09246 355 EFKGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASAA 395 (501)
T ss_pred cccCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 36899999999999999999999999999999999999986
No 40
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.54 E-value=2.5e-14 Score=128.76 Aligned_cols=114 Identities=17% Similarity=0.098 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEE--EecCCCC-CCceeeeeeeecccceeEEEeeccc
Q 029314 45 AFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKL-PGEVISEEYSLEYGKDVMEMHVGAV 121 (195)
Q Consensus 45 ~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~--~rk~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (195)
.-..+++.|++... .++|+|+++|..|.+.|..+|+.+|+|+.. +|++... +.....+..|..+.+..|.... ..
T Consensus 268 ~R~~~G~~La~~~~-~~~D~vv~VP~s~~~~A~~~a~~~gip~~~~lik~~~~~rt~~~~~~~~R~~~v~~~f~~~~-~~ 345 (471)
T PRK06781 268 ARKNMGKRLAAEAP-IEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVR-GV 345 (471)
T ss_pred HHHHHHHHHhhhCC-CCCcEEEEcChhHHHHHHHHHHHhCCCcccceEEEccCCCCCcCCCHHHHHHHHhcceeccc-cc
Confidence 33578999998764 378999999999999999999999999853 3332211 1111111122233344554332 34
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEE
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICI 160 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~l 160 (195)
++||+|+||||++|||+|+++++++|+++||+.|.+..-
T Consensus 346 i~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~ 384 (471)
T PRK06781 346 VEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIA 384 (471)
T ss_pred cCCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEEC
Confidence 699999999999999999999999999999999887644
No 41
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.54 E-value=1.8e-13 Score=107.01 Aligned_cols=122 Identities=17% Similarity=0.198 Sum_probs=87.8
Q ss_pred chhhhcCHHHHHHHHHHHHHHhcC---CCccEEEEeCCcchHhHHHHHHHhCCCEEEEecCCCCCCceee-eeeeec-cc
Q 029314 36 ITTLLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS-EEYSLE-YG 110 (195)
Q Consensus 36 ~~~i~~~p~~~~~l~~~la~~~~~---~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~-~~~~~~-~~ 110 (195)
...++.+.+.+++-.+.+++++.+ .+.-+++|+..|+++|+..|.++++.|..+- +.. ++|..+ .+
T Consensus 7 ~~evLisee~I~~ri~ela~~I~~~y~g~~~~vv~iLkGs~~F~~dL~r~i~~~~e~d---------Fm~vSSYg~~t~s 77 (178)
T COG0634 7 IKEVLISEEQIKARIKELAAQITEDYGGKDPLVVGVLKGSFPFMADLIRAIDFPLEVD---------FMHVSSYGGGTSS 77 (178)
T ss_pred cceEeeCHHHHHHHHHHHHHHHHHhhCCCceEEEEEcccchhhHHHHHHhcCCCceeE---------EEEEeccCCCccc
Confidence 344667777776666666655532 1334899999999999999999999887431 110 112111 11
Q ss_pred ceeEEEeec--ccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCcc
Q 029314 111 KDVMEMHVG--AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNAC 166 (195)
Q Consensus 111 ~~~~~~~~~--~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~ 166 (195)
.+.+.+.++ .-++||+|||||||++||.||..+.++|+..||+.+.++++++|+..
T Consensus 78 sg~v~i~kDld~di~grdVLiVeDIiDsG~TLs~i~~~l~~r~a~sv~i~tLldK~~~ 135 (178)
T COG0634 78 SGEVKILKDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIATLLDKPER 135 (178)
T ss_pred CCceEEecccccCCCCCeEEEEecccccChhHHHHHHHHHhCCCCeEEEEEEeeCccc
Confidence 122333332 34699999999999999999999999999999999999999999854
No 42
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.54 E-value=1.7e-13 Score=116.31 Aligned_cols=106 Identities=20% Similarity=0.336 Sum_probs=78.0
Q ss_pred ccEEEEeCCcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchHHHH
Q 029314 62 ISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLS 141 (195)
Q Consensus 62 ~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~ 141 (195)
.++|++++.||+++|..+|+.+++|+.+++|.+..+.. ..+. .....++||+|+||||+++||+|+.
T Consensus 155 ~~vvv~pd~Ga~~~a~~lA~~l~~~~~~i~k~r~~~~~------------~~~~-~~~~~v~Gk~VlIVDDIi~TG~Tl~ 221 (285)
T PRK00934 155 DPLVLAPDKGALELAKEAAEILGCEYDYLEKTRISPTE------------VEIA-PKNLDVKGKDVLIVDDIISTGGTMA 221 (285)
T ss_pred CCEEEEeCCchHHHHHHHHHHhCCCEEEEEEEecCCCe------------EEEe-ccccccCCCEEEEEcCccccHHHHH
Confidence 34899999999999999999999999887765431111 0011 0112358999999999999999999
Q ss_pred HHHHHHhhcCCcEEEEEEEEecCccCchhHHHHhhhhcCceee
Q 029314 142 AAIRLLGSFQNHIFILICIQMLNACFSSYILLFSYATNGFTQF 184 (195)
Q Consensus 142 ~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~~~~~~~~~ 184 (195)
++++.|+++||+.+.++++. +.++. .+...+++.|+..+
T Consensus 222 ~aa~~Lk~~GA~~V~~~~~H---~i~~~-~a~~~l~~~~i~~i 260 (285)
T PRK00934 222 TAIKILKEQGAKKVYVACVH---PVLVG-DAILKLYNAGVDEI 260 (285)
T ss_pred HHHHHHHHCCCCEEEEEEEe---eccCc-HHHHHHHhCCCCEE
Confidence 99999999999999999984 33332 24444555554444
No 43
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.53 E-value=4.1e-14 Score=127.60 Aligned_cols=111 Identities=14% Similarity=0.185 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEE--EecCCCCCCcee--eeeeeecccceeEEEeecccC
Q 029314 47 RDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEVI--SEEYSLEYGKDVMEMHVGAVQ 122 (195)
Q Consensus 47 ~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~--~rk~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 122 (195)
..+++.|++.+.. ++|+|+|||..|.++|..+|+.+|+|+.. +|.+.. ...+. .+..|..+.+..|.... ..+
T Consensus 272 ~~lg~~La~~~~~-~~D~VvpVPnqa~~lA~~la~~lgip~~~~lvk~~~~-~rt~~~~~q~~R~~~vr~~f~~~~-~~~ 348 (484)
T PRK07272 272 KRMGKRLAQEFPH-DADIVIGVPNSSLSAASGYAEESGLPYEMGLVKNQYV-ARTFIQPTQELREQGVRMKLSAVS-GVV 348 (484)
T ss_pred HHHHHHHHhhcCC-CCCEEEEecHHHHHHHHHHHHHHCCCcccCeEEEccC-CccccCCCHHHHHHHHhhCccccc-ccc
Confidence 5788888877653 57999999999999999999999999842 332211 11111 11112222233443322 346
Q ss_pred CCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEE
Q 029314 123 AGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICI 160 (195)
Q Consensus 123 ~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~l 160 (195)
+||+|+||||++|||+|+.++++.|+++||+.|.+++.
T Consensus 349 ~gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~~ 386 (484)
T PRK07272 349 KGKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAIA 386 (484)
T ss_pred CCCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEEe
Confidence 99999999999999999999999999999999999988
No 44
>PLN02440 amidophosphoribosyltransferase
Probab=99.53 E-value=8.2e-14 Score=125.84 Aligned_cols=113 Identities=17% Similarity=0.186 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEE--EEecCCCCCCceeeeeeeecccceeEEEee-cccCC
Q 029314 47 RDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFV--PMRKPKKLPGEVISEEYSLEYGKDVMEMHV-GAVQA 123 (195)
Q Consensus 47 ~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~--~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 123 (195)
..+++.|++.+.. ++|+|+++|.+|+++|..+|+.+++|+. ++|.+.. ...++....+......+..+.. ...++
T Consensus 262 ~~~g~~La~~~~~-~~d~vvpVP~s~~~~A~~la~~lgiP~~~~lvr~ry~-~rt~i~~~q~~r~~~~~~k~~~~~~~v~ 339 (479)
T PLN02440 262 LEFGEILATEIPV-DCDVVIPVPDSGRVAALGYAAKLGVPFQQGLIRSHYV-GRTFIEPSQKIRDFSVKLKLNPVRSVLE 339 (479)
T ss_pred HHHHHHHHHhcCC-CCCEEEEeCCcHHHHHHHHHHHhCCCchhheEEEeec-cccccCcchhhhhhhheeeeeccccccc
Confidence 3677888877653 7899999999999999999999999985 3443321 0011100000001111122211 12369
Q ss_pred CCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEE
Q 029314 124 GERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQ 161 (195)
Q Consensus 124 Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv 161 (195)
||+||||||++|||+|++++++.|+++||+.|.++++.
T Consensus 340 gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~~ 377 (479)
T PLN02440 340 GKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIAS 377 (479)
T ss_pred CceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEEC
Confidence 99999999999999999999999999999999999886
No 45
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.53 E-value=5e-13 Score=115.15 Aligned_cols=107 Identities=18% Similarity=0.268 Sum_probs=78.8
Q ss_pred cEEEEeCCcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchHHHHH
Q 029314 63 SVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSA 142 (195)
Q Consensus 63 D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~ 142 (195)
.+||+++.||..+|..+|+.+++|+.+.+|++.... .+....+.+. +. ++||+|+|||||+|||+|+.+
T Consensus 167 ~vvVsPd~G~~~~A~~lA~~lg~~~~~~~k~r~~~~---------~~~~~~~~~~-gd-v~Gr~viIVDDIidTG~Tl~~ 235 (320)
T PRK02269 167 VVVVSPDHGGVTRARKLAQFLKTPIAIIDKRRSVDK---------MNTSEVMNII-GN-VKGKKCILIDDMIDTAGTICH 235 (320)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCEEEEEecccCCC---------CceeEEEEec-cc-cCCCEEEEEeeecCcHHHHHH
Confidence 489999999999999999999999988777543110 0111112221 23 589999999999999999999
Q ss_pred HHHHHhhcCCcEEEEEEEEecCccCchhHHHHhhhhcCceee
Q 029314 143 AIRLLGSFQNHIFILICIQMLNACFSSYILLFSYATNGFTQF 184 (195)
Q Consensus 143 a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~~~~~~~~~ 184 (195)
+++.|++.||+.|.+++. ++.++.....+ +++-++..+
T Consensus 236 aa~~Lk~~GA~~V~~~~t---Hglf~~~a~~~-l~~~~i~~i 273 (320)
T PRK02269 236 AADALAEAGATEVYASCT---HPVLSGPALDN-IQKSAIEKL 273 (320)
T ss_pred HHHHHHHCCCCEEEEEEE---CcccCchHHHH-HHhCCCCEE
Confidence 999999999999999888 66665533333 344444444
No 46
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.51 E-value=7.4e-14 Score=126.32 Aligned_cols=111 Identities=15% Similarity=0.110 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEE--EecCCC---CCCceeeeeeeecccceeEEEeecc
Q 029314 46 FRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKK---LPGEVISEEYSLEYGKDVMEMHVGA 120 (195)
Q Consensus 46 ~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~--~rk~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (195)
-..+++.|++... .++|+|+|+|..|+++|..+|+.+|+|+.. .|++.. ..++.... +....+..+... ..
T Consensus 298 R~~~G~~La~~~~-~~~DvVv~VP~sg~~~A~g~A~~lgip~~~~L~r~~y~grtfi~p~q~~--R~~~~~~kl~~~-~~ 373 (500)
T PRK07349 298 RQRLGQQLAKESP-VDADLVIGVPDSGIPAAIGFSQASGIPYAEGLIKNRYVGRTFIQPTQSM--RESGIRMKLNPL-KD 373 (500)
T ss_pred HHHHHHHHhhhcc-cCCcEEEEeccccHHHHHHHHHHHCCCchhceEEEeccCccccCCCHHH--HHhhhheeeecc-cc
Confidence 3467888886554 478999999999999999999999999963 333221 11111110 000111111111 23
Q ss_pred cCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEE
Q 029314 121 VQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICI 160 (195)
Q Consensus 121 ~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~l 160 (195)
.++||+||||||++|||+|+++++++|+++||+.|++..-
T Consensus 374 ~~~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~i~ 413 (500)
T PRK07349 374 VLAGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRIS 413 (500)
T ss_pred ccCCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEEeC
Confidence 4589999999999999999999999999999999876643
No 47
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.51 E-value=8.8e-14 Score=111.27 Aligned_cols=115 Identities=19% Similarity=0.238 Sum_probs=82.3
Q ss_pred hhcCHHHHHHHHHHHHHHhc--CCCccEEEEeCCcchHhHHHHHHHhCC-CEEEEecC-CCCCCceeeeeeeecccceeE
Q 029314 39 LLLDTKAFRDTIDLFVERYK--DKNISVVAGIEARGFIFGPPIALAIGA-KFVPMRKP-KKLPGEVISEEYSLEYGKDVM 114 (195)
Q Consensus 39 i~~~p~~~~~l~~~la~~~~--~~~~D~Iv~v~~~G~~lA~~la~~l~~-p~~~~rk~-~~~~~~~~~~~~~~~~~~~~~ 114 (195)
.+.+.+.++.++..||+++. ++.||+|+++.+||+.+|..|+..|++ |+..+.-. ...... .....
T Consensus 5 ~~vSw~~I~~~~~~lA~kI~~s~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~~~~----------~~~~~ 74 (192)
T COG2236 5 LYVSWEEIHRLCRALAEKIRASGFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETAE----------RDGEA 74 (192)
T ss_pred EEecHHHHHHHHHHHHHHHHHcCCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEehhhcc----------cCCcc
Confidence 34578888999999999986 479999999999999999999999998 44433211 110000 00011
Q ss_pred EEeec---ccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEec
Q 029314 115 EMHVG---AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQML 163 (195)
Q Consensus 115 ~~~~~---~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~ 163 (195)
.+... ..+.||+|||||||.+||.||..+.+.|++..+..+..+++-.+
T Consensus 75 ~v~~~~~~d~l~GkkVLIVDDI~DTG~Tl~~a~~~l~~~~p~e~rta~l~~~ 126 (192)
T COG2236 75 KVKYPITIDPLSGKKVLIVDDIVDTGETLELALEELKKLAPAEVRTAVLQYK 126 (192)
T ss_pred eeecCccccccCCCeEEEEecccCchHhHHHHHHHHHhhCchhhhhhhhhcc
Confidence 11111 11599999999999999999999999999966666655554333
No 48
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.50 E-value=7.8e-13 Score=113.85 Aligned_cols=107 Identities=21% Similarity=0.282 Sum_probs=80.1
Q ss_pred cEEEEeCCcchHhHHHHHHHhC-CCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchHHHH
Q 029314 63 SVVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLS 141 (195)
Q Consensus 63 D~Iv~v~~~G~~lA~~la~~l~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~ 141 (195)
-+||+|+.||..+|..+|+.++ .|+..+.|++.... ....+.+ .+ .++||+|+|||||++||+|+.
T Consensus 168 ~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~-----------~~~~~~~-~g-dv~Gr~viIVDDIidTG~Tl~ 234 (319)
T PRK04923 168 LIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRAN-----------VATVMNI-IG-DVQGKTCVLVDDLVDTAGTLC 234 (319)
T ss_pred CEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCC-----------ceEEEec-cc-CCCCCEEEEEecccCchHHHH
Confidence 3899999999999999999998 89998877653111 0111111 12 359999999999999999999
Q ss_pred HHHHHHhhcCCcEEEEEEEEecCccCchhHHHHhhhhcCceeeEE
Q 029314 142 AAIRLLGSFQNHIFILICIQMLNACFSSYILLFSYATNGFTQFTI 186 (195)
Q Consensus 142 ~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (195)
++++.|+++||+.|.+++. ++.++... ...++.-++..+-.
T Consensus 235 ~aa~~Lk~~GA~~V~~~~T---Hgvfs~~a-~~~l~~s~i~~iv~ 275 (319)
T PRK04923 235 AAAAALKQRGALKVVAYIT---HPVLSGPA-VDNINNSQLDELVV 275 (319)
T ss_pred HHHHHHHHCCCCEEEEEEE---CcccCchH-HHHHhhCCCCEEEE
Confidence 9999999999999998887 67766433 33344455555433
No 49
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.50 E-value=5.5e-14 Score=125.85 Aligned_cols=110 Identities=15% Similarity=0.134 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEE--EecCCCCCCcee-e--eeeeecccceeEEEeeccc
Q 029314 47 RDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEVI-S--EEYSLEYGKDVMEMHVGAV 121 (195)
Q Consensus 47 ~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~--~rk~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~ 121 (195)
..+++.|+++.. .++|+|+++|..|+++|..+|+.+++|+.. .|++. .+.+. . +..+....+..+.... ..
T Consensus 260 ~~~g~~La~~~~-~~~D~Vv~VP~sg~~~A~~la~~lgip~~~~l~r~~~--~~r~~i~~~q~~R~~~v~~k~~~~~-~~ 335 (442)
T TIGR01134 260 KRMGEKLARESP-VEADVVIPVPDSGRSAALGFAQASGIPYREGLIKNRY--VGRTFIMPTQELRELSVRLKLNPIR-EV 335 (442)
T ss_pred HHHHHHHHHhcC-CCCEEEEEccCCHHHHHHHHHHHhCCCchHHeEEecc--ccccccCCCHHHHHHHHhhhccccc-cc
Confidence 478888887654 378999999999999999999999999853 33221 11111 0 1111111122232222 23
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEE
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICI 160 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~l 160 (195)
++||+||||||++|||+|+++++++|+++|++.|++.+.
T Consensus 336 ~~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~ 374 (442)
T TIGR01134 336 FRGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIA 374 (442)
T ss_pred CCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEc
Confidence 589999999999999999999999999999999997655
No 50
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.48 E-value=1.2e-13 Score=124.40 Aligned_cols=111 Identities=15% Similarity=0.093 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEE--EecCCC---CCCceeeeeeeecccceeEEEeecc
Q 029314 46 FRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKK---LPGEVISEEYSLEYGKDVMEMHVGA 120 (195)
Q Consensus 46 ~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~--~rk~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (195)
-..+++.|++... .++|+|+++|..|.++|..+|+.+|+|+.. +|++.. ..+. .+..|..+.+..|.... .
T Consensus 269 R~~~G~~La~~~~-~~~D~VvpVP~s~~~~A~gla~~~gip~~~~lik~~~~~Rt~i~~--~~~~R~~nv~~~f~~~~-~ 344 (475)
T PRK07631 269 RKNLGKRLALEAP-VEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQP--SQALREQGVKMKLSPVR-G 344 (475)
T ss_pred HHHHHHHHHhhCC-CCCcEEEEechhHHHHHHHHHHHHCCCcccceEEEecCCCCCcCC--CHHHHHHHHhhhhhhcc-c
Confidence 3478888887664 478999999999999999999999999953 333221 1111 11112222333443322 3
Q ss_pred cCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEE
Q 029314 121 VQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICI 160 (195)
Q Consensus 121 ~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~l 160 (195)
.++||+||||||++|||+|+++++++|+++||+.|.+..-
T Consensus 345 ~v~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~ 384 (475)
T PRK07631 345 VVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRIS 384 (475)
T ss_pred ccCCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEe
Confidence 4689999999999999999999999999999999887654
No 51
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.48 E-value=1.5e-12 Score=112.73 Aligned_cols=90 Identities=23% Similarity=0.320 Sum_probs=72.2
Q ss_pred EEEEeCCcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchHHHHHH
Q 029314 64 VVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAA 143 (195)
Q Consensus 64 ~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a 143 (195)
+|++++.+|..+|..+|+.+++|+.+++|++.... ....+.+. +. ++||+|+||||+++||+|+.++
T Consensus 171 vvVsPD~gg~~rA~~lA~~lg~~~~vi~K~r~~~~-----------~~~~~~~~-gd-v~Gk~VIIVDDIi~TG~Tl~~a 237 (332)
T PRK00553 171 VVVSPDYGGVKRARLIAESLELPLAIIDKRRPKHN-----------VAESINVL-GE-VKNKNCLIVDDMIDTGGTVIAA 237 (332)
T ss_pred EEEEECCCcHHHHHHHHHHhCCCEEEEEEecCCcc-----------eEeeEEee-cc-CCCCEEEEEeccccchHHHHHH
Confidence 89999999999999999999999998887653110 11122221 23 5899999999999999999999
Q ss_pred HHHHhhcCCcEEEEEEEEecCccCch
Q 029314 144 IRLLGSFQNHIFILICIQMLNACFSS 169 (195)
Q Consensus 144 ~~~L~~~Ga~~V~~~~lv~~~~~~~~ 169 (195)
++.|+++||+.+.+++. .+.++.
T Consensus 238 a~~Lk~~GA~~V~~~at---Hglf~~ 260 (332)
T PRK00553 238 AKLLKKQKAKKVCVMAT---HGLFNK 260 (332)
T ss_pred HHHHHHcCCcEEEEEEE---eeecCc
Confidence 99999999999999886 445443
No 52
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.48 E-value=2.2e-13 Score=121.73 Aligned_cols=112 Identities=16% Similarity=0.125 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEE--EecCCCCCCceeeeeeeecccceeEEEee-ccc
Q 029314 45 AFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEVISEEYSLEYGKDVMEMHV-GAV 121 (195)
Q Consensus 45 ~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~--~rk~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 121 (195)
.-.++++.|++... .++|+|+++|..|.++|..+|+.+|+|+.. .|.+.. ...++....+ + ....+.+.. ...
T Consensus 256 ~R~~~G~~La~~~~-~~~D~Vv~VPdsg~~~A~~~a~~lgip~~~~l~k~r~~-~rtfi~~~qr-~-~~~~~k~~~~~~~ 331 (442)
T PRK08341 256 ARYRMGVELARESP-AEGDVVIAVPDSGRTAALGFAHESGIPYMEGLIKNRYI-GRTFIMPSGR-E-LKVKLKLSPVREV 331 (442)
T ss_pred HHHHHHHHhhcccC-CCCceEEEecCchHHHHHHHHHHhCCCchheEEEeccc-cccccCcCch-h-hhheeeecccccc
Confidence 33478888887664 368999999999999999999999999963 333321 0011110001 0 111121111 233
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEE
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICI 160 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~l 160 (195)
++||+|+||||++|||+|+.+++++|+++||+.|.+...
T Consensus 332 v~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~~ 370 (442)
T PRK08341 332 INGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRIA 370 (442)
T ss_pred cCCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEEc
Confidence 589999999999999999999999999999999888763
No 53
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.47 E-value=3.4e-13 Score=121.58 Aligned_cols=112 Identities=15% Similarity=0.161 Sum_probs=78.9
Q ss_pred HHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEE--EecCCCCCCceeeeeeeecccceeEEEee-cccCCC
Q 029314 48 DTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEVISEEYSLEYGKDVMEMHV-GAVQAG 124 (195)
Q Consensus 48 ~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~--~rk~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~G 124 (195)
.+++.|++.... +.|+|+++|..|.++|..+|+.+|+|+.. .+.+.. ...++...........++.... ...++|
T Consensus 276 ~~G~~La~~~~~-~~D~Vv~vPdsg~~~A~~~A~~lgip~~~~l~r~~~~-~rtfi~~~q~~R~~~~~~k~~~~~~~v~g 353 (469)
T PRK05793 276 RAGRQLYKEYPV-DADIVIGVPDSGIPAAIGYAEASGIPYGIGFIKNKYV-GRTFIAPSQELRERAVRVKLNPLKVNVEG 353 (469)
T ss_pred HHHHHHHHhcCC-CCCEEEEcCccHHHHHHHHHHHhCCCEeeeEEEeeec-cccccChhHhhhhhhheEecccCccccCC
Confidence 788889887753 67899999999999999999999999954 233211 0011110000000111222211 123589
Q ss_pred CEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEE
Q 029314 125 ERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQ 161 (195)
Q Consensus 125 k~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv 161 (195)
|+|+||||++|||+|+.++++.|+++||+.|.+++..
T Consensus 354 k~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~~ 390 (469)
T PRK05793 354 KRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVSS 390 (469)
T ss_pred CEEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEEC
Confidence 9999999999999999999999999999999988764
No 54
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.47 E-value=1.9e-12 Score=111.10 Aligned_cols=87 Identities=22% Similarity=0.295 Sum_probs=70.7
Q ss_pred CccEEEEeCCcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchHHH
Q 029314 61 NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTL 140 (195)
Q Consensus 61 ~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl 140 (195)
+..+|++++.||+.+|..+|+.+|+|+.+++|.++.+.. ...+.+. + .++|++|+||||+++||+|+
T Consensus 158 ~~~vvv~pd~Gg~~~A~~la~~Lg~~~~~~~k~r~~~~~-----------~~~~~~~-~-~~~g~~vliVDDii~TG~T~ 224 (309)
T PRK01259 158 ENLVVVSPDVGGVVRARALAKRLDADLAIIDKRRPRANV-----------SEVMNII-G-DVEGRDCILVDDMIDTAGTL 224 (309)
T ss_pred CCcEEEEECCCcHHHHHHHHHHhCCCEEEEEeeccccee-----------EEEEeec-c-cCCCCEEEEEecccCcHHHH
Confidence 456999999999999999999999999888765531110 1112221 2 35899999999999999999
Q ss_pred HHHHHHHhhcCCcEEEEEEE
Q 029314 141 SAAIRLLGSFQNHIFILICI 160 (195)
Q Consensus 141 ~~a~~~L~~~Ga~~V~~~~l 160 (195)
.++++.|++.|++.+.+++.
T Consensus 225 ~~a~~~l~~~Ga~~v~~~~t 244 (309)
T PRK01259 225 CKAAEALKERGAKSVYAYAT 244 (309)
T ss_pred HHHHHHHHccCCCEEEEEEE
Confidence 99999999999999999887
No 55
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=99.47 E-value=1.4e-12 Score=111.01 Aligned_cols=129 Identities=22% Similarity=0.297 Sum_probs=88.9
Q ss_pred EEech--hhhcCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeeccc
Q 029314 33 FQDIT--TLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYG 110 (195)
Q Consensus 33 ~~d~~--~i~~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~ 110 (195)
|+|+. +++..|.+ ++.+.+.+...+ .+||+|..||...|..+|..|+.|+.++.|++. +.....
T Consensus 138 fFdipvdnl~a~p~l----~~~~~~~~~~~d-~vVVSPD~Ggv~RAr~~A~~L~~~~a~i~K~R~-~~~~~v-------- 203 (314)
T COG0462 138 FFDIPVDNLYAAPLL----AEYIREKYDLDD-PVVVSPDKGGVKRARALADRLGAPLAIIDKRRD-SSPNVV-------- 203 (314)
T ss_pred cCCCccccccchHHH----HHHHHHhcCCCC-cEEECCCccHHHHHHHHHHHhCCCEEEEEEeec-CCCCeE--------
Confidence 56653 44444443 444444431113 489999999999999999999999988877663 111000
Q ss_pred ceeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCchhHHHHhhhhcCce
Q 029314 111 KDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACFSSYILLFSYATNGFT 182 (195)
Q Consensus 111 ~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~~~~~~~ 182 (195)
......+. ++||+|+||||+++||+|+..++++|++.||+.|.++|. .+.++ ..+.+.++.-.+.
T Consensus 204 --~~~~~~gd-V~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~~t---H~vfs-~~a~~~l~~~~i~ 268 (314)
T COG0462 204 --EVMNLIGD-VEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAAT---HGVFS-GAALERLEASAID 268 (314)
T ss_pred --EEeecccc-cCCCEEEEEeccccccHHHHHHHHHHHHCCCCeEEEEEE---chhhC-hHHHHHHhcCCCC
Confidence 01111123 599999999999999999999999999999999999988 55555 3345555544333
No 56
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.47 E-value=7.1e-13 Score=119.65 Aligned_cols=112 Identities=18% Similarity=0.166 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEE--EEecCCCCCCce-eeeeeeecccceeEEEee--
Q 029314 44 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFV--PMRKPKKLPGEV-ISEEYSLEYGKDVMEMHV-- 118 (195)
Q Consensus 44 ~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~--~~rk~~~~~~~~-~~~~~~~~~~~~~~~~~~-- 118 (195)
++-+.+++.|++.... ++|+|+|||.+|+++|..+++.+++|+. ++|++.. +.+ ...... .....+.+..
T Consensus 279 ~~R~~~g~~La~~~~~-~~D~Vv~VP~sg~~~A~~la~~lgip~~~~lir~~y~--grt~i~~~q~--~r~~~v~~k~~~ 353 (479)
T PRK09123 279 EVRKNIGRELARESPV-DADVVVPVPDSGVPAAIGYAQESGIPFELGIIRNHYV--GRTFIQPTQQ--IRNLGVKLKHNA 353 (479)
T ss_pred HHHHHHHHHHHHhCCC-CCeEEEEcCccHHHHHHHHHHhcCCCeeheEEEEeec--Cccccccccc--cccccEEEEecc
Confidence 4455778888876653 7899999999999999999999999996 3444321 111 000000 0111122211
Q ss_pred -cccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEE
Q 029314 119 -GAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICI 160 (195)
Q Consensus 119 -~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~l 160 (195)
...++||+|+||||+++||+|+.++++.|+++||+.|.+++.
T Consensus 354 ~~~~~~gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~~~ 396 (479)
T PRK09123 354 NRAVIEGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRIA 396 (479)
T ss_pred cccccCCCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEEEc
Confidence 233689999999999999999999999999999999998764
No 57
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.45 E-value=3.8e-12 Score=108.98 Aligned_cols=121 Identities=19% Similarity=0.223 Sum_probs=82.4
Q ss_pred HHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhC-CCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEE
Q 029314 49 TIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERA 127 (195)
Q Consensus 49 l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~V 127 (195)
+++.+.+.+...++ +|+++..||+.+|..+++.++ .|+.+++|.+..... .......+ ...++||+|
T Consensus 137 la~~i~~~~~~~~~-vvVspd~Ga~~~a~~la~~L~~~~~~~i~k~R~~~~~---------~~~~~~~~--~~dv~gr~v 204 (304)
T PRK03092 137 LADYVRDKYDLDNV-TVVSPDAGRVRVAEQWADRLGGAPLAFIHKTRDPTVP---------NQVVANRV--VGDVEGRTC 204 (304)
T ss_pred HHHHHHHhcCCCCc-EEEEecCchHHHHHHHHHHcCCCCEEEEEEEcccCCC---------CceEEEec--CcCCCCCEE
Confidence 34444443332233 899999999999999999999 999888765421100 00001111 123599999
Q ss_pred EEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCchhHHHHhhhhcCceeeE
Q 029314 128 LIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACFSSYILLFSYATNGFTQFT 185 (195)
Q Consensus 128 LLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~ 185 (195)
+||||+++||+|+.++++.|++.|++.+.+++. .+.++. .+...+++.|+..+-
T Consensus 205 iIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~t---H~v~~~-~a~~~l~~~~~~~i~ 258 (304)
T PRK03092 205 VLVDDMIDTGGTIAGAVRALKEAGAKDVIIAAT---HGVLSG-PAAERLKNCGAREVV 258 (304)
T ss_pred EEEccccCcHHHHHHHHHHHHhcCCCeEEEEEE---cccCCh-HHHHHHHHCCCCEEE
Confidence 999999999999999999999999999998885 344432 233344455555443
No 58
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.44 E-value=3.5e-12 Score=110.00 Aligned_cols=106 Identities=15% Similarity=0.205 Sum_probs=78.8
Q ss_pred cEEEEeCCcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchHHHHH
Q 029314 63 SVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSA 142 (195)
Q Consensus 63 D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~ 142 (195)
-+|+++..||..+|..+++.+++|+.++++++... + ... ..+ .+ .++||+|+|||||++||+|+.+
T Consensus 171 ~vvV~pd~Ga~~~A~~la~~L~~~~~~~~~~r~~~-------~----~~~-~~i-~g-dV~gk~viIVDDIidTG~Tl~~ 236 (323)
T PRK02458 171 VVVVSPKNSGIKRARSLAEYLDAPIAIIDYAQDDS-------E----REE-GYI-IG-DVAGKKAILIDDILNTGKTFAE 236 (323)
T ss_pred eEEEEECCChHHHHHHHHHHhCCCEEEEEEecCCC-------c----cee-ecc-cc-ccCCCEEEEEcceeCcHHHHHH
Confidence 38999999999999999999999998776543210 0 000 011 12 3599999999999999999999
Q ss_pred HHHHHhhcCCcEEEEEEEEecCccCchhHHHHhhhhcCceeeEE
Q 029314 143 AIRLLGSFQNHIFILICIQMLNACFSSYILLFSYATNGFTQFTI 186 (195)
Q Consensus 143 a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (195)
+++.|++.||+.|.+++. ++.++... ...+++-|+..+-.
T Consensus 237 aa~~Lk~~GA~~V~~~~t---Hgif~~~a-~~~l~~s~i~~iv~ 276 (323)
T PRK02458 237 AAKIVEREGATEIYAVAS---HGLFAGGA-AEVLENAPIKEILV 276 (323)
T ss_pred HHHHHHhCCCCcEEEEEE---ChhcCchH-HHHHhhCCCCEEEE
Confidence 999999999999999888 66665533 44455555554433
No 59
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.44 E-value=9.1e-13 Score=118.72 Aligned_cols=110 Identities=14% Similarity=0.178 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEE--EecCCCCCCceeeeeeeecccceeEEEee---ccc
Q 029314 47 RDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEVISEEYSLEYGKDVMEMHV---GAV 121 (195)
Q Consensus 47 ~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~--~rk~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 121 (195)
..+++.|++... .+.|+|++||..|.+.|..+|+.+++|+.. .|.+.... ++..... ..+...+.+.. ...
T Consensus 278 ~~~G~~La~~~~-~~~D~VvpVP~s~~~~A~g~a~~~gip~~~~L~r~r~~~r-~fi~~~q--~~R~~~~~~kl~~~~~~ 353 (474)
T PRK06388 278 VRMGMRLAKESP-VEADVVVPVPDSGRSQAIGFSMASGIPYTEGLIKNRYSER-TFIMPTQ--SDRKAAIKLKLNPIREV 353 (474)
T ss_pred HHHHHHHHhhcc-CCCcEEEeeCCCcHHHHHHHHHHhCCCchhheEEecccCC-cccCCch--hhhhhceeEEecccccc
Confidence 478888887654 467999999999999999999999999953 33333211 1111000 00111122211 124
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEE
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICI 160 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~l 160 (195)
++||+||||||++|||+|+++++++|+++||+.|.+..-
T Consensus 354 i~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~ 392 (474)
T PRK06388 354 ISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIG 392 (474)
T ss_pred ccCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 589999999999999999999999999999999887644
No 60
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.43 E-value=4.4e-12 Score=111.39 Aligned_cols=93 Identities=22% Similarity=0.269 Sum_probs=72.2
Q ss_pred CccEEEEeCCcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeeccccee-EEEee-cccCCCCEEEEEeeeccchH
Q 029314 61 NISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDV-MEMHV-GAVQAGERALIVDDLVATGG 138 (195)
Q Consensus 61 ~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~Gk~VLLVDDV~tTG~ 138 (195)
+..+||+|+.||...|..+|..++.|+.+++|++...... .+... ..... +..++||+|+||||+++||+
T Consensus 207 ~~~VVVsPD~Gg~~rA~~~A~~Lg~~~ai~~K~R~~~~~~--------~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~ 278 (382)
T PRK06827 207 DHLMVISPDTGAMDRAKYYASVLGVDLGLFYKRRDYSRVV--------NGRNPIVAHEFLGRDVEGKDVLIVDDMIASGG 278 (382)
T ss_pred CCcEEEEECccchHHHHHHHHHhCCCEEEEEcccCCcccc--------cCCCceEEEecCCcccCCCEEEEEeCCcCcHH
Confidence 3459999999999999999999999999888865321100 01111 11111 21359999999999999999
Q ss_pred HHHHHHHHHhhcCCcEEEEEEEE
Q 029314 139 TLSAAIRLLGSFQNHIFILICIQ 161 (195)
Q Consensus 139 Tl~~a~~~L~~~Ga~~V~~~~lv 161 (195)
|+..+++.|++.||+.+.+++..
T Consensus 279 Tl~~aa~~Lk~~GA~~V~~~~tH 301 (382)
T PRK06827 279 SMIDAAKELKSRGAKKIIVAATF 301 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEe
Confidence 99999999999999999999884
No 61
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.42 E-value=1.2e-12 Score=118.87 Aligned_cols=114 Identities=17% Similarity=0.105 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEEE-ecCCCCCCceeeeeeeecccceeEEEee-cccC
Q 029314 45 AFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPM-RKPKKLPGEVISEEYSLEYGKDVMEMHV-GAVQ 122 (195)
Q Consensus 45 ~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~-rk~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 122 (195)
.-..+++.|++... .+.|+|++||.+|++.|..+|+.+|+|+... .|.+.................-++.+.. ...+
T Consensus 287 ~R~~~G~~La~~~~-~~~D~VvpVP~sG~~~A~g~a~~~gip~~~~l~kn~~~grtfi~~~q~~r~~~~r~k~~~~~~~~ 365 (510)
T PRK07847 287 ARVEIGRRLAREHP-VEADLVIPVPESGTPAAVGYAQESGIPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREVI 365 (510)
T ss_pred HHHHHHHHHHhhCC-CCCeEEEeccCchHHHHHHHHHHhCCChhhceEeecccccCccCcchhhhhhceeeecCcccccc
Confidence 33578889988664 4789999999999999999999999998542 2211100000000000000000111110 2236
Q ss_pred CCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEE
Q 029314 123 AGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILIC 159 (195)
Q Consensus 123 ~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~ 159 (195)
+||+||||||++|||+|+.++++.|+++|++.|.+..
T Consensus 366 ~gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~ri 402 (510)
T PRK07847 366 RGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRI 402 (510)
T ss_pred CCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEE
Confidence 9999999999999999999999999999999987653
No 62
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=99.39 E-value=8.8e-12 Score=106.95 Aligned_cols=100 Identities=22% Similarity=0.278 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEE
Q 029314 48 DTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERA 127 (195)
Q Consensus 48 ~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~V 127 (195)
.+++++.+.. .+.++|++++.+|+.+|..+|+.+|+|+..++|.+..+.. .... ......++|++|
T Consensus 148 ~l~~~i~~~~--~~~~viv~pd~g~~~~A~~lA~~Lg~~~~~i~k~r~~~~~-----------~~~~-~~~~~~v~g~~v 213 (308)
T TIGR01251 148 VLAEYLKKKI--LDNPVVVSPDAGGVERAKKVADALGCPLAIIDKRRISATN-----------EVEV-MNLVGDVEGKDV 213 (308)
T ss_pred HHHHHHHhhC--CCCCEEEEECCchHHHHHHHHHHhCCCEEEEEEEecCCCC-----------EEEE-EecccccCCCEE
Confidence 3444554432 2346999999999999999999999999888765431110 0000 111223589999
Q ss_pred EEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEE
Q 029314 128 LIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQ 161 (195)
Q Consensus 128 LLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv 161 (195)
+||||+++||+|+.++++.|++.|++.+.+++..
T Consensus 214 liVDDii~tG~Tl~~a~~~l~~~ga~~v~~~~th 247 (308)
T TIGR01251 214 VIVDDIIDTGGTIAKAAEILKSAGAKRVIAAATH 247 (308)
T ss_pred EEEccccCCHHHHHHHHHHHHhcCCCEEEEEEEe
Confidence 9999999999999999999999999999888874
No 63
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=99.34 E-value=4.3e-11 Score=102.43 Aligned_cols=84 Identities=21% Similarity=0.248 Sum_probs=67.9
Q ss_pred EEEEeCCcchHhHHHHHHHh-CCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchHHHHH
Q 029314 64 VVAGIEARGFIFGPPIALAI-GAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSA 142 (195)
Q Consensus 64 ~Iv~v~~~G~~lA~~la~~l-~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~ 142 (195)
+|++++.+|..+|..+++.+ +.|+.+++|++.... ....+.+ ...++|++|+||||+++||+|+.+
T Consensus 154 vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~-----------~~~~~~~--~~~v~g~~viivDDii~TG~Tl~~ 220 (302)
T PLN02369 154 VVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHN-----------VAEVMNL--IGDVKGKVAIMVDDMIDTAGTITK 220 (302)
T ss_pred EEEEECcChHHHHHHHHHHcCCCCEEEEEEecCCcc-----------eeeeEec--CCCCCCCEEEEEcCcccchHHHHH
Confidence 89999999999999999999 799988877653110 0111211 223589999999999999999999
Q ss_pred HHHHHhhcCCcEEEEEEE
Q 029314 143 AIRLLGSFQNHIFILICI 160 (195)
Q Consensus 143 a~~~L~~~Ga~~V~~~~l 160 (195)
+++.|++.|++.+.+++.
T Consensus 221 a~~~l~~~Ga~~v~~~~t 238 (302)
T PLN02369 221 GAALLHQEGAREVYACAT 238 (302)
T ss_pred HHHHHHhCCCCEEEEEEE
Confidence 999999999999998884
No 64
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.31 E-value=5.7e-11 Score=102.73 Aligned_cols=85 Identities=24% Similarity=0.330 Sum_probs=68.2
Q ss_pred cEEEEeCCcchHhHHHHHHHhC-CCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchHHHH
Q 029314 63 SVVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLS 141 (195)
Q Consensus 63 D~Iv~v~~~G~~lA~~la~~l~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~ 141 (195)
.+|++++.+|..+|..+|+.++ .|+.++.|++.... ....+.+. + .++|++|+||||+++||+|+.
T Consensus 181 ~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~-----------~~~~~~~~-~-~v~g~~viiVDDii~TG~T~~ 247 (330)
T PRK02812 181 IVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHN-----------VAEVLNVI-G-DVKGKTAILVDDMIDTGGTIC 247 (330)
T ss_pred eEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCc-----------eeeeEecc-c-cCCCCEEEEEccccCcHHHHH
Confidence 4899999999999999999994 89988877553110 01112211 2 358999999999999999999
Q ss_pred HHHHHHhhcCCcEEEEEEE
Q 029314 142 AAIRLLGSFQNHIFILICI 160 (195)
Q Consensus 142 ~a~~~L~~~Ga~~V~~~~l 160 (195)
++++.|++.|++.+.+++.
T Consensus 248 ~a~~~L~~~Ga~~v~~~~t 266 (330)
T PRK02812 248 EGARLLRKEGAKQVYACAT 266 (330)
T ss_pred HHHHHHhccCCCeEEEEEE
Confidence 9999999999999999886
No 65
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=99.30 E-value=5e-11 Score=102.73 Aligned_cols=95 Identities=20% Similarity=0.129 Sum_probs=71.9
Q ss_pred cEEEEeCCcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchHHHHH
Q 029314 63 SVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSA 142 (195)
Q Consensus 63 D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~ 142 (195)
.+||+++.||...+..++ .+.|+.++.|++. + ...........++||+|+|||||++||+|+..
T Consensus 185 ~vvVsPD~Ga~~ra~~~a--~~~~~~~~~K~R~--g------------~~~~~~~~~~dv~gr~vlIVDDIidTG~Tl~~ 248 (326)
T PLN02297 185 IVIAFPDDGAWKRFHKQF--EHFPMVVCTKVRE--G------------DKRIVRIKEGNPAGRHVVIVDDLVQSGGTLIE 248 (326)
T ss_pred cEEEecCccHHHHHHHHc--CCCCEEEEEeEEC--C------------CceEEEecccccCCCeEEEEecccCcHHHHHH
Confidence 389999999998877766 5789988877652 1 00111111223599999999999999999999
Q ss_pred HHHHHhhcCCcEEEEEEEEecCccCchhHHHHhh
Q 029314 143 AIRLLGSFQNHIFILICIQMLNACFSSYILLFSY 176 (195)
Q Consensus 143 a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~ 176 (195)
+++.|++.|++.+.+++. ++.++.....++.
T Consensus 249 aa~~L~~~Ga~~V~~~~T---Hglfs~~a~~~l~ 279 (326)
T PLN02297 249 CQKVLAAHGAAKVSAYVT---HGVFPNESWERFT 279 (326)
T ss_pred HHHHHHHCCCcEEEEEEE---CcccChhHHHHHH
Confidence 999999999999999988 6777654444443
No 66
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.22 E-value=2.7e-10 Score=101.34 Aligned_cols=105 Identities=19% Similarity=0.285 Sum_probs=76.4
Q ss_pred cEEEEeCCcchHhHHHHHHHhC------CCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccc
Q 029314 63 SVVAGIEARGFIFGPPIALAIG------AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT 136 (195)
Q Consensus 63 D~Iv~v~~~G~~lA~~la~~l~------~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tT 136 (195)
.+||++..||...|..++..++ .++.++.|++..+.+. ..+.+. + .++|++|+|||||++|
T Consensus 281 pVVVsPD~Ga~~RAr~~A~~L~~~~~~~~~~avl~K~R~~~~~v-----------~~~~lv-g-dV~Gk~vIIVDDIIdT 347 (439)
T PTZ00145 281 PVIVSPDAGGVYRARKFQDGLNHRGISDCGIAMLIKQRTKPNEI-----------EKMDLV-G-NVYDSDVIIVDDMIDT 347 (439)
T ss_pred cEEEccCcchHHHHHHHHHHhccccccCCCEEEEEeecCCCCce-----------EEEecc-C-CCCCCEEEEEcceeCc
Confidence 3899999999999999999997 6888777655322110 012221 3 3599999999999999
Q ss_pred hHHHHHHHHHHhhcCCcEEEEEEEEecCccCchhHHHHhhhhcCceee
Q 029314 137 GGTLSAAIRLLGSFQNHIFILICIQMLNACFSSYILLFSYATNGFTQF 184 (195)
Q Consensus 137 G~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~~~~~~~~~ 184 (195)
|+|+.++++.|++.||+.|.+++. ++.++.. +...+.+-++..+
T Consensus 348 G~Tl~~aa~~Lk~~GA~~V~~~~T---Hglfs~~-A~~rl~~s~i~~I 391 (439)
T PTZ00145 348 SGTLCEAAKQLKKHGARRVFAFAT---HGLFSGP-AIERIEASPLEEV 391 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEE---cccCChh-HHHHHhcCCCCEE
Confidence 999999999999999999999886 5555432 2333344444443
No 67
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.21 E-value=2.3e-10 Score=88.55 Aligned_cols=126 Identities=21% Similarity=0.228 Sum_probs=82.7
Q ss_pred hcCHHHHHHHHHHHHHHhc----CCCccEEEEeCCcchHhHHHHHHHhC------CCEEEEecCCCCCCceeeeeeeecc
Q 029314 40 LLDTKAFRDTIDLFVERYK----DKNISVVAGIEARGFIFGPPIALAIG------AKFVPMRKPKKLPGEVISEEYSLEY 109 (195)
Q Consensus 40 ~~~p~~~~~l~~~la~~~~----~~~~D~Iv~v~~~G~~lA~~la~~l~------~p~~~~rk~~~~~~~~~~~~~~~~~ 109 (195)
+.|++.++.....++.++. ..+--+++|+.+||.++|..|++.++ +|+..+-- .-|+...
T Consensus 6 ild~~~i~RtitRia~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDI----------t~yRDDl 75 (179)
T COG2065 6 ILDEAAIRRTITRIAHEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDI----------TLYRDDL 75 (179)
T ss_pred eCCHHHHHHHHHHHHHHHHHHhCCCCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeeeEEe----------EEeechh
Confidence 4577777665655555443 22323899999999999999999873 45422110 0000000
Q ss_pred --cc--ee-EEEe-ecccCCCCEEEEEeeeccchHHHHHHHHHHhhcC-CcEEEEEEEEecCcc----CchhHHHHh
Q 029314 110 --GK--DV-MEMH-VGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQ-NHIFILICIQMLNAC----FSSYILLFS 175 (195)
Q Consensus 110 --~~--~~-~~~~-~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~G-a~~V~~~~lv~~~~~----~~~~~~~~~ 175 (195)
.. .. ..-. ....+.||+|+|||||+.||.|+++|++.|...| +..+..+|++|++-. ++.|-|.-.
T Consensus 76 ~~~~~~~p~~~~t~~~~di~~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~LavLVDRGHRELPIRaDyVGKni 152 (179)
T COG2065 76 TQKGPLRPQAKTTILPFDITGKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAVLVDRGHRELPIRADYVGKNI 152 (179)
T ss_pred hhcCccCCcccCccCcccccCCEEEEEeeecccCccHHHHHHHHHhcCCcceEEEEEEEcCCCccCCcccccccCcC
Confidence 00 00 0000 0122599999999999999999999999999998 689999999998643 566666433
No 68
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.15 E-value=1.1e-10 Score=103.17 Aligned_cols=110 Identities=16% Similarity=0.175 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEE--EecCCCCCCceee-eeeeecccceeEEEee---c
Q 029314 46 FRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEVIS-EEYSLEYGKDVMEMHV---G 119 (195)
Q Consensus 46 ~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~--~rk~~~~~~~~~~-~~~~~~~~~~~~~~~~---~ 119 (195)
-..+++.|+++.. .+.|+|+|||..|.+.|...|+++|+|+.. ++.+. .+-++. ... +.+...+.++. .
T Consensus 269 R~~mG~~La~e~~-~eaDvVipVPDSg~~aAig~A~~sGiPy~~GliKNrY--vgRTFI~P~q--~~R~~~Vr~KLnpvr 343 (470)
T COG0034 269 RKRMGEKLAEEIP-VEADVVIPVPDSGRPAAIGYARASGIPYEEGLIKNRY--VGRTFIMPTQ--ELREKGVRLKLNPVR 343 (470)
T ss_pred HHHHHHHHHHhCC-ccccEEEecCCCChHHHHHHHHHhCCchhhccccccc--cceeeeCCcH--HHHHhhhhhhcCchH
Confidence 3578888888765 367999999999999999999999999954 33322 111111 000 00111111111 2
Q ss_pred ccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEE
Q 029314 120 AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICI 160 (195)
Q Consensus 120 ~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~l 160 (195)
..++||||+||||-+-.|+|++..+++|+++||+.|++..-
T Consensus 344 ~~v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvria 384 (470)
T COG0034 344 EVVKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIA 384 (470)
T ss_pred HHhCCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEec
Confidence 34699999999999999999999999999999999998754
No 69
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=99.14 E-value=9.6e-10 Score=89.44 Aligned_cols=113 Identities=18% Similarity=0.182 Sum_probs=76.1
Q ss_pred EEEEeCCcchHhHHHHHHHhC-CCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchHHHHH
Q 029314 64 VVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSA 142 (195)
Q Consensus 64 ~Iv~v~~~G~~lA~~la~~l~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~ 142 (195)
++|++.++|++++..+++.++ .++..+...+.. .+ .............++|++||||||+++||+|+.+
T Consensus 73 vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~--~t--------~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ 142 (209)
T PRK00129 73 VIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDE--ET--------LEPVEYYVKLPEDIDERTVIVVDPMLATGGSAIA 142 (209)
T ss_pred EEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCC--CC--------CCCEEEEeeCCCcCCCCEEEEECCcccchHHHHH
Confidence 788999999999999999997 344333222110 00 0000011111233589999999999999999999
Q ss_pred HHHHHhhcCCcEEEEEEEEecCccCchhHHHHhhhhcCceeeEEeeccccc
Q 029314 143 AIRLLGSFQNHIFILICIQMLNACFSSYILLFSYATNGFTQFTITSEGVDA 193 (195)
Q Consensus 143 a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (195)
+++.|++.|++.+.+++++.++. +++.+.+ -||.++|---.+|.
T Consensus 143 ai~~L~~~G~~~I~~~~ll~~~~------gl~~l~~-~~p~v~i~~~~iD~ 186 (209)
T PRK00129 143 AIDLLKKRGAKNIKVLCLVAAPE------GIKALEE-AHPDVEIYTAAIDE 186 (209)
T ss_pred HHHHHHHcCCCEEEEEEEecCHH------HHHHHHH-HCCCcEEEEEeecC
Confidence 99999999999999999976652 3333332 23456665544443
No 70
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=99.11 E-value=1.5e-09 Score=88.11 Aligned_cols=114 Identities=18% Similarity=0.143 Sum_probs=76.5
Q ss_pred EEEEeCCcchHhHHHHHHHhC-CCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchHHHHH
Q 029314 64 VVAGIEARGFIFGPPIALAIG-AKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSA 142 (195)
Q Consensus 64 ~Iv~v~~~G~~lA~~la~~l~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~ 142 (195)
+++++.++|++++..+.+.+. .++..+.+.+.. . +..........+..++|++||||||+++||+|+.+
T Consensus 71 ~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~~--~--------t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ 140 (207)
T TIGR01091 71 VLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNE--E--------TLKPVPYYSKLPEDIDERTVIVLDPMLATGGTMIA 140 (207)
T ss_pred EEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeCC--C--------CCCCEEEEecCCCCCCCCEEEEECCCccchHHHHH
Confidence 678889999999999999986 344333221110 0 00000111111233589999999999999999999
Q ss_pred HHHHHhhcCCcEEEEEEEEecCccCchhHHHHhhhhcCceeeEEeecccccC
Q 029314 143 AIRLLGSFQNHIFILICIQMLNACFSSYILLFSYATNGFTQFTITSEGVDAG 194 (195)
Q Consensus 143 a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (195)
+++.|++.|++.+.+++++.++. +.+.+.+ -||.++|---.+|.+
T Consensus 141 ai~~L~~~G~~~I~v~~ll~~~~------gl~~l~~-~~p~v~i~~~~id~~ 185 (207)
T TIGR01091 141 ALDLLKKRGAKKIKVLSIVAAPE------GIEAVEK-AHPDVDIYTAAIDEK 185 (207)
T ss_pred HHHHHHHcCCCEEEEEEEecCHH------HHHHHHH-HCCCCEEEEEEECCC
Confidence 99999999999999999976652 3333332 456666665555543
No 71
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=99.10 E-value=1e-09 Score=87.07 Aligned_cols=119 Identities=22% Similarity=0.236 Sum_probs=73.2
Q ss_pred cEEEEeCCcchHhHHHHHHHhCCCEEEEecCCCCCC----------cee-eeeee------ecccc--eeEEEeecccCC
Q 029314 63 SVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPG----------EVI-SEEYS------LEYGK--DVMEMHVGAVQA 123 (195)
Q Consensus 63 D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~----------~~~-~~~~~------~~~~~--~~~~~~~~~~~~ 123 (195)
-+||++..+|..-|+.+|..|++.+.++.++++... +.. ..... ....+ ..+.+ .+. ++
T Consensus 5 aVIVa~~~g~akRAts~Ad~L~l~~avih~e~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~e~~~~~v-VGD-V~ 82 (184)
T PF14572_consen 5 AVIVAKDPGGAKRATSFADRLRLGFAVIHGERRDSESDGVDGRHSPPMSRSAAVSSSEEIPEMTPKEKPPMNV-VGD-VK 82 (184)
T ss_dssp EEEEESSGGGHHHHHHHHHHCT-EEEEE------------------------------------------EEE-ES---T
T ss_pred CEEEeCCCCchHhHHHHHHHhCCCeeEecCccccccccccccccCCCccccccccccchhhhcccCcccceEE-EEE-cc
Confidence 489999999999999999999999988766443110 000 00000 00000 01111 133 59
Q ss_pred CCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCchhHHHHhhhhcCceeeEEe
Q 029314 124 GERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACFSSYILLFSYATNGFTQFTIT 187 (195)
Q Consensus 124 Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (195)
||.++||||+++||.|+..+++.|++.||+.|++++- .+.++.. +.+.++.-.+..+-+|
T Consensus 83 gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aT---Hgvfs~~-A~~~l~~s~Id~vvvT 142 (184)
T PF14572_consen 83 GKICIIVDDIIDTGGTLIKAAELLKERGAKKVYACAT---HGVFSGD-APERLEESPIDEVVVT 142 (184)
T ss_dssp TSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEE---EE---TT-HHHHHHHSSESEEEEE
T ss_pred CCeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEe---CcccCch-HHHHHhhcCCeEEEEe
Confidence 9999999999999999999999999999999998887 4555543 3444555566655444
No 72
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.09 E-value=1.3e-09 Score=87.67 Aligned_cols=117 Identities=21% Similarity=0.235 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCE--EEEecCCCCCCc-----eeeee------e-----
Q 029314 44 KAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKF--VPMRKPKKLPGE-----VISEE------Y----- 105 (195)
Q Consensus 44 ~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~--~~~rk~~~~~~~-----~~~~~------~----- 105 (195)
+..+.+++.|+..-. .+.-+|+++++||++.|.++|+.||.|+ +++||-+....+ .+... +
T Consensus 9 dAGr~La~~l~~~~~-~~~~iVlaLpRGGvpva~evA~~lga~ldvliVrKiG~P~n~E~aiGAvae~g~~v~n~~~~~~ 87 (220)
T COG1926 9 DAGRKLAQELAALRD-LKDVIVLALPRGGVPVAFEVAQALGAPLDVLIVRKIGAPGNPELAIGAVAEGGDVVLNYDVVRS 87 (220)
T ss_pred HHHHHHHHHHHhhcc-CCCcEEEEecCCCchHHHHHHHHhCCCeeEEEEeecCCCCCchhceeeeccCCcEecchhhhhh
Confidence 445556666554321 2333899999999999999999999998 456774432110 01000 0
Q ss_pred -ee--cccc-----------e-eEEEee-c--ccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEE
Q 029314 106 -SL--EYGK-----------D-VMEMHV-G--AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQ 161 (195)
Q Consensus 106 -~~--~~~~-----------~-~~~~~~-~--~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv 161 (195)
.. ++.. . ...... + ..++|++|+||||-+.||+||.++++.+++.+++.+.+++=+
T Consensus 88 ~~i~~~~i~~~~~~e~~El~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV 161 (220)
T COG1926 88 LGIDDAYIEAAAARERKELLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPV 161 (220)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEccc
Confidence 00 0000 0 000111 1 236999999999999999999999999999999988777543
No 73
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.09 E-value=1.1e-09 Score=85.48 Aligned_cols=123 Identities=15% Similarity=0.300 Sum_probs=86.6
Q ss_pred EechhhhcCHHHHHHHHHHHHHHhcC---CCccEEEEeCCcchHhHHHHHHHhC-------CCEEE--EecCCCCCCcee
Q 029314 34 QDITTLLLDTKAFRDTIDLFVERYKD---KNISVVAGIEARGFIFGPPIALAIG-------AKFVP--MRKPKKLPGEVI 101 (195)
Q Consensus 34 ~d~~~i~~~p~~~~~l~~~la~~~~~---~~~D~Iv~v~~~G~~lA~~la~~l~-------~p~~~--~rk~~~~~~~~~ 101 (195)
-|++.++.-..+++.-.+.||..+.+ ..+-+++|+..||+.|-+.|-+++. +|+.+ +|-
T Consensus 30 ~Dls~v~ip~gli~dr~~rlakDi~~~~g~~~i~~lcVlkG~ykF~adLve~l~n~~s~~~~pmtvDFIR~--------- 100 (216)
T KOG3367|consen 30 GDLSGVVIPHGLIRDRVERLAKDIMKEIGNKPIIFLCVLKGGYKFFADLVERLKNRNSDRPLPMTVDFIRA--------- 100 (216)
T ss_pred ccccccccccchhhhHHHHhhhhhhhccCCCceEEEEEecchhHHHHHHHHHHhhcccCCCcceeeeeeeh---------
Confidence 47777777667777777777776643 2344889999999988777777753 33322 221
Q ss_pred eeeeeecccceeEEEeec---ccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCcc
Q 029314 102 SEEYSLEYGKDVMEMHVG---AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNAC 166 (195)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~---~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~ 166 (195)
++|......+.+++-.. .-+.||+|||||||++||.||....+.+++.+++.++++.+..++-.
T Consensus 101 -kSY~n~~stg~iqiig~d~l~~ltgK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vasLL~Krt~ 167 (216)
T KOG3367|consen 101 -KSYCNDQSTGDIQIIGGDDLSTLTGKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVASLLVKRTR 167 (216)
T ss_pred -hhhcCCcccCCceeecCCCHHHhcCCcEEEEEeeccccchHHHHHHHHHhcCccceeeeeecccccc
Confidence 22322222222332221 12699999999999999999999999999999999999999988643
No 74
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=98.91 E-value=1.4e-08 Score=85.45 Aligned_cols=118 Identities=24% Similarity=0.276 Sum_probs=86.5
Q ss_pred EEec--hhhhcCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeeccc
Q 029314 33 FQDI--TTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYG 110 (195)
Q Consensus 33 ~~d~--~~i~~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~ 110 (195)
|+|+ .+++..|..++++... ..+++.-+|+.+..||.--++.++..+++-+..+.|.++.. +.
T Consensus 137 fF~ipVdnly~~p~~l~~ir~~----~~~~~~~vivSPdaGgaKR~~s~ad~l~~~fali~ker~k~-----------~~ 201 (316)
T KOG1448|consen 137 FFDIPVDNLYAEPAVLNYIREN----IPDSENAVIVSPDAGGAKRVTSLADRLNLDFALIHKERRKA-----------NE 201 (316)
T ss_pred eeeccchhhccchHHHHHHHhh----CCCccceEEECCCcchhhhhHHHHHhhcchhhhhhhhhhcc-----------cc
Confidence 5555 5888888877665543 44444447888899999999999999998887665543211 11
Q ss_pred ceeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCch
Q 029314 111 KDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACFSS 169 (195)
Q Consensus 111 ~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~ 169 (195)
.+...+..+. ++||.++||||++.|++|+..+++.|.++||+.|++++- .+.|+.
T Consensus 202 v~~~m~LVGD-v~gkvailVDDm~dt~GTl~~aa~~L~~~GA~kV~a~~T---HgVfs~ 256 (316)
T KOG1448|consen 202 VDIRMVLVGD-VKGKVAILVDDMADTCGTLIKAADKLLEHGAKKVYAIVT---HGVFSG 256 (316)
T ss_pred cceEEEEEec-cCCcEEEEecccccccchHHHHHHHHHhcCCceEEEEEc---ceeccc
Confidence 1111122244 499999999999999999999999999999999998876 555544
No 75
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=98.85 E-value=5.7e-09 Score=90.39 Aligned_cols=110 Identities=16% Similarity=0.126 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEE--EecCCCCCCce-eeee--eeecccceeEEEeeccc
Q 029314 47 RDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP--MRKPKKLPGEV-ISEE--YSLEYGKDVMEMHVGAV 121 (195)
Q Consensus 47 ~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~--~rk~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~ 121 (195)
..+++.|+. ..+.+.|+|+++|..|-.-|...|...|+|+.. +|.+. -+-+ +..+ .|....+.+|-.. ...
T Consensus 278 ~~~G~~LA~-e~P~d~DvVi~VPdS~~~aAlgyA~~sG~py~e~l~rnrY--vGRTFI~P~q~iR~~~V~~Kl~~l-~~~ 353 (474)
T KOG0572|consen 278 LQCGEQLAT-EAPVDADVVIPVPDSGTTAALGYAAKSGLPYQEVLIRNRY--VGRTFIEPNQRIRQLGVKKKLGPL-RQN 353 (474)
T ss_pred HHHHhHhhh-cCCcccceEEecCCchhHHHHHHHHHhCCchhhhhhhccc--ccceecCccHHHHHhhhhhhcccc-hhh
Confidence 356777776 344688999999999999999999999999964 33322 1111 1111 1100011122221 124
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEE
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICI 160 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~l 160 (195)
+.||||+||||-+--|+|+...+++|+++||+.|+....
T Consensus 354 ~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~riA 392 (474)
T KOG0572|consen 354 FEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIRIA 392 (474)
T ss_pred cCCceEEEEecceeccCchHHHHHHHHHcCCcEEEEEec
Confidence 599999999999999999999999999999999997654
No 76
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=98.28 E-value=3.9e-05 Score=61.31 Aligned_cols=151 Identities=17% Similarity=0.172 Sum_probs=93.6
Q ss_pred eEEechhh-----hcCHHHHHHHHHHHHHHhcC--CCccEEEEeCCcchHhHHHHHHHhCCCEEEEec-CCCCCCceeee
Q 029314 32 MFQDITTL-----LLDTKAFRDTIDLFVERYKD--KNISVVAGIEARGFIFGPPIALAIGAKFVPMRK-PKKLPGEVISE 103 (195)
Q Consensus 32 ~~~d~~~i-----~~~p~~~~~l~~~la~~~~~--~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk-~~~~~~~~~~~ 103 (195)
.|.-+|.+ -.+|......+..|+..+.+ .++-+++|..+-.--++..+++.++-...++.. |...++....-
T Consensus 17 ~fLfVSkVLGKHiPv~P~~~~~~~~~La~~~~~~~~~~~lvIGfAETATgLG~~V~~~~~~~~~ylhTTR~~v~~~~~~~ 96 (191)
T PF15609_consen 17 AFLFVSKVLGKHIPVRPSVMRDAGRLLAAQVPEALPGPVLVIGFAETATGLGHGVFDALGAACLYLHTTREPVPGVPPLL 96 (191)
T ss_pred eeEEEecccCcccCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEhHHHHHHHHHHHHHhhhccceeeeccccCCCCccce
Confidence 35556644 45899999999999988765 255689999999999999999999844433332 22233311111
Q ss_pred eeeecc--ccee-EEEeec-ccCCCCEEEEEeeeccchHHHHHHHHHHhhcCC-cEEEEEEEEecCccCchhHHHHhhhh
Q 029314 104 EYSLEY--GKDV-MEMHVG-AVQAGERALIVDDLVATGGTLSAAIRLLGSFQN-HIFILICIQMLNACFSSYILLFSYAT 178 (195)
Q Consensus 104 ~~~~~~--~~~~-~~~~~~-~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga-~~V~~~~lv~~~~~~~~~~~~~~~~~ 178 (195)
.+.-++ -.+. ++.... .+...+.++||||=+|||+|+...++.|++.-+ +.+.+++++|-...-..-....+-+.
T Consensus 97 ~F~E~HSHAt~h~ly~~~~~~l~~~~~lVLVDDEiSTG~T~lnli~al~~~~p~~~yvvasL~d~~~~~~~~~~~~~~~~ 176 (191)
T PF15609_consen 97 EFEEEHSHATDHLLYPPDPDLLRNARTLVLVDDEISTGNTFLNLIRALHAKYPRKRYVVASLLDWRSEEDRARFEALAEE 176 (191)
T ss_pred eeeccccccccceecCCChHHhcCCCCEEEEecCccchHHHHHHHHHHHHhCCCceEEEEEEeeCCCHHHHHHHHHHHHH
Confidence 111111 1111 221111 234567999999999999999999999997644 56667777665432222223444555
Q ss_pred cCce
Q 029314 179 NGFT 182 (195)
Q Consensus 179 ~~~~ 182 (195)
.|++
T Consensus 177 lgi~ 180 (191)
T PF15609_consen 177 LGIP 180 (191)
T ss_pred cCCc
Confidence 5644
No 77
>PLN02541 uracil phosphoribosyltransferase
Probab=98.11 E-value=3.5e-05 Score=64.13 Aligned_cols=64 Identities=30% Similarity=0.394 Sum_probs=44.9
Q ss_pred CCCEEEEEeeeccchHHHHHHHHHHhhcCCc--EEEEEEEEecCccCchhHHHHhhhhcCceeeEEeeccccc
Q 029314 123 AGERALIVDDLVATGGTLSAAIRLLGSFQNH--IFILICIQMLNACFSSYILLFSYATNGFTQFTITSEGVDA 193 (195)
Q Consensus 123 ~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~--~V~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (195)
.+++|+|+||++.||+|+.++++.|++.|++ .+.+++++..+ .+.+.+. +-||.++|---.+|.
T Consensus 156 ~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~v~~ias~------~Gl~~i~-~~fP~v~I~ta~ID~ 221 (244)
T PLN02541 156 EGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVVCAVAAP------PALKKLS-EKFPGLHVYAGIIDE 221 (244)
T ss_pred CCCEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEEEEEEECH------HHHHHHH-HHCcCCEEEEEEECc
Confidence 4679999999999999999999999999997 66666665443 2333332 224455554444443
No 78
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=97.95 E-value=0.00086 Score=54.46 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=59.8
Q ss_pred EEEEeCCcchHhHHHHHHHhC-CCEEEE--ecCCCCCCceeeeeeeecccceeEE-EeecccCCCCEEEEEeeeccchHH
Q 029314 64 VVAGIEARGFIFGPPIALAIG-AKFVPM--RKPKKLPGEVISEEYSLEYGKDVME-MHVGAVQAGERALIVDDLVATGGT 139 (195)
Q Consensus 64 ~Iv~v~~~G~~lA~~la~~l~-~p~~~~--rk~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Gk~VLLVDDV~tTG~T 139 (195)
++|++.+.|.++...+.+.+- .++..+ .+..+ ..+..+. .+-+..+.+++|+|+|-++.||+|
T Consensus 70 ~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~~-------------t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s 136 (207)
T PF14681_consen 70 CIVPILRAGLPMLEGFREVFPDARVGHIGIQRDEE-------------TLEPVLYYNKLPEDIENRKVILLDPMLATGGS 136 (207)
T ss_dssp EEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEETT-------------TSSEEEEEEE--TTGTTSEEEEEESEESSSHH
T ss_pred EEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcCC-------------ccceeeeHhhCCCCccCCEEEEEeccccchhh
Confidence 678888999999999888873 343222 22111 0111111 111233488999999999999999
Q ss_pred HHHHHHHHhhcCC--cEEEEEEEEecC
Q 029314 140 LSAAIRLLGSFQN--HIFILICIQMLN 164 (195)
Q Consensus 140 l~~a~~~L~~~Ga--~~V~~~~lv~~~ 164 (195)
+.++++.|++.|+ +.+.+++++..+
T Consensus 137 ~~~ai~~L~~~G~~~~~I~~v~~ias~ 163 (207)
T PF14681_consen 137 AIAAIEILKEHGVPEENIIIVSVIASP 163 (207)
T ss_dssp HHHHHHHHHHTTG-GGEEEEEEEEEEH
T ss_pred HHHHHHHHHHcCCCcceEEEEEEEecH
Confidence 9999999999886 677777776443
No 79
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.32 E-value=0.0019 Score=52.43 Aligned_cols=87 Identities=20% Similarity=0.206 Sum_probs=60.5
Q ss_pred EEEEeCCcchHhHHHHHHHhC-CCEEE--E-ecCCCCCCceeeeeeeecccceeEEE-eecccCCCCEEEEEeeeccchH
Q 029314 64 VVAGIEARGFIFGPPIALAIG-AKFVP--M-RKPKKLPGEVISEEYSLEYGKDVMEM-HVGAVQAGERALIVDDLVATGG 138 (195)
Q Consensus 64 ~Iv~v~~~G~~lA~~la~~l~-~p~~~--~-rk~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Gk~VLLVDDV~tTG~ 138 (195)
++|++-+.|..+...+.+.+- .+.-. + |.+.+ .+...+. .-+....++.|+|+|=.+.||+
T Consensus 73 ~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~~Rdeet--------------~~p~~yy~KLP~~~~~~~viv~DPMLATG~ 138 (210)
T COG0035 73 VIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDEET--------------LEPVLYYEKLPEDIDERTVIVLDPMLATGG 138 (210)
T ss_pred EEEEEeeccccHHHHHHHhCCcceEEEEEEEecCcc--------------CceehhHHhCCCcccCCeEEEECchhhccH
Confidence 567778999988888888753 11111 1 11111 1111111 1122358999999999999999
Q ss_pred HHHHHHHHHhhc-CCcEEEEEEEEecC
Q 029314 139 TLSAAIRLLGSF-QNHIFILICIQMLN 164 (195)
Q Consensus 139 Tl~~a~~~L~~~-Ga~~V~~~~lv~~~ 164 (195)
|+..+++.|++. |++.+.+.+++..+
T Consensus 139 s~i~ai~~L~~~G~~~~I~~v~~vAap 165 (210)
T COG0035 139 SAIAAIDLLKKRGGPKNIKVVSLVAAP 165 (210)
T ss_pred hHHHHHHHHHHhCCCceEEEEEEEecH
Confidence 999999999999 89999999998665
No 80
>PF15610 PRTase_3: PRTase ComF-like
Probab=96.19 E-value=0.048 Score=45.98 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=34.9
Q ss_pred eEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcE
Q 029314 113 VMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHI 154 (195)
Q Consensus 113 ~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~ 154 (195)
.+.+.... +.||.|+++|||..||++-..+.+.+++.|++-
T Consensus 128 ~y~ID~~~-l~gk~lIflDDIkITGshE~~V~~~~~~~~~~~ 168 (274)
T PF15610_consen 128 TYHIDKEF-LSGKHLIFLDDIKITGSHEDKVRKILKEYGLEN 168 (274)
T ss_pred ceEecHHH-hCCcEEEEeccEEecCcHHHHHHHHHHHcCccc
Confidence 34554443 599999999999999999999999999999865
No 81
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=95.97 E-value=0.11 Score=43.37 Aligned_cols=119 Identities=17% Similarity=0.161 Sum_probs=75.2
Q ss_pred chhhhcCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEEEecCCCC-----------CCceeeee
Q 029314 36 ITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKL-----------PGEVISEE 104 (195)
Q Consensus 36 ~~~i~~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~-----------~~~~~~~~ 104 (195)
+.++-.+|-+++.+-+ .+.++.-.+||+-..+-..-|...|++|.+.+.++.-+.+. |.......
T Consensus 146 vdnlraspfllqyiqe----~ipdyrnavivaksp~~akka~syaerlrlglavihge~k~~e~d~~dgr~spp~~~~~t 221 (354)
T KOG1503|consen 146 VDNLRASPFLLQYIQE----EIPDYRNAVIVAKSPGVAKKAQSYAERLRLGLAVIHGEQKDTESDLVDGRHSPPPVVTAT 221 (354)
T ss_pred ccccccCHHHHHHHHH----hCccccceEEEecCcchhhHHHhHHHHHhhceeEeeccccccccccccCCcCCCCccccc
Confidence 3456667777666544 34444445777776777788899999988887766433221 11111100
Q ss_pred e--eec------ccceeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEE
Q 029314 105 Y--SLE------YGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICI 160 (195)
Q Consensus 105 ~--~~~------~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~l 160 (195)
. ..+ ..+..+.+- +. +.|+-.++|||+++--.+..++++.|++.||-.+++.+-
T Consensus 222 ~~~~~~lp~~~~k~kppltvv-gd-vggriaimvddiiddvqsfvaaae~lkergaykiyv~at 283 (354)
T KOG1503|consen 222 THPSLELPAQISKEKPPLTVV-GD-VGGRIAIMVDDIIDDVQSFVAAAEVLKERGAYKIYVMAT 283 (354)
T ss_pred cCccccCchhhcccCCCeEEE-ec-cCceEEEEehhhHHhHHHHHHHHHHHHhcCceEEEEEee
Confidence 0 000 000111111 22 478889999999999999999999999999998887665
No 82
>KOG1377 consensus Uridine 5'- monophosphate synthase/orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=91.29 E-value=0.33 Score=40.47 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=71.4
Q ss_pred eEEechhhhcCHHHHHHHHHHHHHHhcC--CCccE--EEEeCCcch-HhHHHHHHHhCCCEEEEecCCCCCCceeeeeee
Q 029314 32 MFQDITTLLLDTKAFRDTIDLFVERYKD--KNISV--VAGIEARGF-IFGPPIALAIGAKFVPMRKPKKLPGEVISEEYS 106 (195)
Q Consensus 32 ~~~d~~~i~~~p~~~~~l~~~la~~~~~--~~~D~--Iv~v~~~G~-~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~ 106 (195)
.|.|.+... .+..+..+++..+..+-+ ..+|+ +++++..|. .-+...+...+++.+.-+...+ .+.+..-
T Consensus 64 i~~df~~~~-~~k~L~aLA~a~~f~I~edrkffDigntvg~qY~gg~~kia~wadl~n~h~v~g~~i~~----g~~rk~~ 138 (261)
T KOG1377|consen 64 IFFDFSLFN-SGKDLRALAQAYAFLIFEDRKFFDIGNTVGLQYKGGPLKIASWADLVNAHGVPGRGIIK----GLNRKLL 138 (261)
T ss_pred eeecccccc-cHHHHHHHHHHHHHHHHhhhhcccccceeccccccchHHHHHHHHHHhccCcccchHHH----HHhhhcc
Confidence 356666553 788889999988876643 46888 999998775 4556667777766543221000 0000000
Q ss_pred ecccceeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecC
Q 029314 107 LEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLN 164 (195)
Q Consensus 107 ~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~ 164 (195)
...+.+..-+ .....+|++|+.||+.++|.-+.+. .+.-..+.++++.+..+++
T Consensus 139 k~~~egG~ll--lAems~kg~L~~~dy~ea~~aI~ee--~~d~~~G~v~g~~~~ldrq 192 (261)
T KOG1377|consen 139 KDHGEGGVLL--LAELSSKGSLITGDYTEAATAIAEE--DIDFVNGFVAGSIVALDRQ 192 (261)
T ss_pred ccCCCCceEE--EEEeccCCceeehhHHHHHHHHHHh--hhchheeEEeeeeeeccHH
Confidence 0111111111 1224788899999966666666655 3333355677777766665
No 83
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=88.18 E-value=1.6 Score=35.53 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=30.7
Q ss_pred cCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcE
Q 029314 121 VQAGERALIVDDLVATGGTLSAAIRLLGSFQNHI 154 (195)
Q Consensus 121 ~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~ 154 (195)
.+..++|||.=-++.||+|+..|++.|+++|...
T Consensus 186 DI~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~ 219 (267)
T KOG1017|consen 186 DITSRRVLLMYPIISTGNTVCKAVEVLKEHGVPD 219 (267)
T ss_pred cccceeEEEEeeeecCCccHHHHHHHHHHcCCCc
Confidence 3477899999999999999999999999999754
No 84
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=85.39 E-value=12 Score=27.38 Aligned_cols=74 Identities=15% Similarity=0.158 Sum_probs=43.1
Q ss_pred cchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccc--hH--HHHHHHHH
Q 029314 71 RGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT--GG--TLSAAIRL 146 (195)
Q Consensus 71 ~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tT--G~--Tl~~a~~~ 146 (195)
..-.+|..+|+.+|.+......++- ..|+..+.+ ...++|+.|+||-..... -. -+.-+++.
T Consensus 8 ~~~~La~~ia~~L~~~~~~~~~~~F------------~dGE~~v~i--~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a 73 (116)
T PF13793_consen 8 SSQDLAERIAEALGIPLGKVETKRF------------PDGETYVRI--PESVRGKDVFIIQSTSPPVNDNLMELLLLIDA 73 (116)
T ss_dssp SGHHHHHHHHHHTTS-EE-EEEEE-------------TTS-EEEEE--SS--TTSEEEEE---SSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCceeeeEEEEc------------CCCCEEEEe--cccccCCceEEEEecCCchhHHHHHHHHHHHH
Confidence 3458999999999998865332211 123323333 334589999999988875 33 23447888
Q ss_pred HhhcCCcEEEEE
Q 029314 147 LGSFQNHIFILI 158 (195)
Q Consensus 147 L~~~Ga~~V~~~ 158 (195)
+++.|++.|.++
T Consensus 74 ~r~~~a~~i~~V 85 (116)
T PF13793_consen 74 LRRAGAKRITLV 85 (116)
T ss_dssp HHHTTBSEEEEE
T ss_pred HHHcCCcEEEEe
Confidence 999999876543
No 85
>PRK04940 hypothetical protein; Provisional
Probab=81.36 E-value=12 Score=29.73 Aligned_cols=75 Identities=12% Similarity=0.269 Sum_probs=46.4
Q ss_pred CCCCC--hHHHHHhhcccccCCCCCCCceEEechhhhcCHHH-HHHHHHHHHHHhcC--CCccEEEEeCCcchHhHHHHH
Q 029314 6 VKAQD--PRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKA-FRDTIDLFVERYKD--KNISVVAGIEARGFIFGPPIA 80 (195)
Q Consensus 6 ~~~~~--~~~~~l~~~~r~~~~~p~~g~~~~d~~~i~~~p~~-~~~l~~~la~~~~~--~~~D~Iv~v~~~G~~lA~~la 80 (195)
-++++ .+.+.++ -+ .|.+++++.+ ...|.. +..+-+.+++.... .+..++||..-||| +|..||
T Consensus 10 SS~~S~~~Ka~~l~-~~-------~p~~~~~~l~--~~~P~~a~~~l~~~i~~~~~~~~~~~~~liGSSLGGy-yA~~La 78 (180)
T PRK04940 10 STSPGNHEKVLQLQ-FI-------DPDVRLISYS--TLHPKHDMQHLLKEVDKMLQLSDDERPLICGVGLGGY-WAERIG 78 (180)
T ss_pred CCCCccHHHHHhhe-ee-------CCCCeEEECC--CCCHHHHHHHHHHHHHHhhhccCCCCcEEEEeChHHH-HHHHHH
Confidence 34555 5666666 33 3445555333 145654 34444444432321 14569999999997 899999
Q ss_pred HHhCCCEEEEe
Q 029314 81 LAIGAKFVPMR 91 (195)
Q Consensus 81 ~~l~~p~~~~r 91 (195)
...++|.+.+.
T Consensus 79 ~~~g~~aVLiN 89 (180)
T PRK04940 79 FLCGIRQVIFN 89 (180)
T ss_pred HHHCCCEEEEC
Confidence 99999988753
No 86
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=78.57 E-value=30 Score=30.10 Aligned_cols=75 Identities=11% Similarity=0.109 Sum_probs=47.8
Q ss_pred eCCcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccc-hHH---HHHH
Q 029314 68 IEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GGT---LSAA 143 (195)
Q Consensus 68 v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tT-G~T---l~~a 143 (195)
.-...-.+|..+|+.+|+++..+..++- ..|+..+.+ ...++|+.|+||-..... ... +.-+
T Consensus 26 ~g~~~~~la~~ia~~lg~~l~~~~~~~F------------pDGE~~v~i--~~~vrg~~V~ivqs~~~p~nd~l~eLll~ 91 (330)
T PRK02812 26 SGSSNPALAQEVARYLGMDLGPMIRKRF------------ADGELYVQI--QESIRGCDVYLIQPTCAPVNDHLMELLIM 91 (330)
T ss_pred ECCCCHHHHHHHHHHhCCCceeeEEEEC------------CCCCEEEEe--CCCCCCCEEEEECCCCCCccHHHHHHHHH
Confidence 3455578999999999998754432211 122222222 233589999999885433 232 3457
Q ss_pred HHHHhhcCCcEEE
Q 029314 144 IRLLGSFQNHIFI 156 (195)
Q Consensus 144 ~~~L~~~Ga~~V~ 156 (195)
++.|+++|++.+.
T Consensus 92 ~~alr~~ga~ri~ 104 (330)
T PRK02812 92 VDACRRASARQIT 104 (330)
T ss_pred HHHHHHhCCceEE
Confidence 7888999998655
No 87
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=77.59 E-value=35 Score=31.04 Aligned_cols=80 Identities=11% Similarity=0.043 Sum_probs=49.2
Q ss_pred EEEEeCCcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccc-hH-H--
Q 029314 64 VVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GG-T-- 139 (195)
Q Consensus 64 ~Iv~v~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tT-G~-T-- 139 (195)
.++-.-...-.+|..||..+|+++..+..++- ..|+-.+.+ ..-++|+.|+||-..... -. -
T Consensus 120 m~I~sgs~~~~LA~~IA~~Lg~~l~~~~~~rF------------pDGE~~Vri--~e~VrG~dV~IVqS~~~pvNd~LmE 185 (439)
T PTZ00145 120 AILFSGSSNPLLSKNIADHLGTILGRVHLKRF------------ADGEVSMQF--LESIRGKDVYIIQPTCPPVNENLIE 185 (439)
T ss_pred eEEEECCCCHHHHHHHHHHhCCCceeeEEEEC------------CCCCEEEEE--CCCcCCCeEEEEecCCCCCcHHHHH
Confidence 33334455568999999999998765432221 122222222 233589999999875433 22 2
Q ss_pred HHHHHHHHhhcCCcEEEE
Q 029314 140 LSAAIRLLGSFQNHIFIL 157 (195)
Q Consensus 140 l~~a~~~L~~~Ga~~V~~ 157 (195)
+.-+++.|+++||+.|.+
T Consensus 186 LLllidAlr~agAkrItl 203 (439)
T PTZ00145 186 LLLMISTCRRASAKKITA 203 (439)
T ss_pred HHHHHHHHHHhccCeEEE
Confidence 334678889999987653
No 88
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=76.30 E-value=27 Score=29.93 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=43.3
Q ss_pred HhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccc--hHH--HHHHHHHHhh
Q 029314 74 IFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT--GGT--LSAAIRLLGS 149 (195)
Q Consensus 74 ~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tT--G~T--l~~a~~~L~~ 149 (195)
.+|..+|+.+|+++..+..++- ..|+..+.+. ..++|+.|+||-..... -.. +.-+++.+++
T Consensus 2 ~lA~~ia~~lg~~l~~~~~~~F------------pdGE~~v~i~--~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~ 67 (302)
T PLN02369 2 ALSQEIACYLGLELGKITIKRF------------ADGEIYVQLQ--ESVRGCDVFLVQPTCPPANENLMELLIMIDACRR 67 (302)
T ss_pred hHHHHHHHHhCCceeeeEEEEC------------CCCCEEEEEC--CCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHH
Confidence 4789999999998764432221 1233223332 33589999999885522 222 3457788899
Q ss_pred cCCcEEE
Q 029314 150 FQNHIFI 156 (195)
Q Consensus 150 ~Ga~~V~ 156 (195)
+|++.+.
T Consensus 68 ~~a~~i~ 74 (302)
T PLN02369 68 ASAKRIT 74 (302)
T ss_pred cCCCeEE
Confidence 9998653
No 89
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=75.65 E-value=32 Score=29.18 Aligned_cols=72 Identities=11% Similarity=0.116 Sum_probs=45.7
Q ss_pred cchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchH---HHHHHHHHH
Q 029314 71 RGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGG---TLSAAIRLL 147 (195)
Q Consensus 71 ~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~---Tl~~a~~~L 147 (195)
..-.+|..+|+.+|+++.....++- ..|+..+.+. .-++|++|+|+-....-.. -+.-+++.|
T Consensus 7 ~~~~la~~ia~~l~~~~~~~~~~~F------------pdGE~~v~i~--~~v~g~~v~i~~~~~~~~d~l~ell~~~~al 72 (285)
T PRK00934 7 ASQLLASEVARLLNTELALVETKRF------------PDGELYVRIL--GEIDGEDVVIISTTYPQDENLVELLLLIDAL 72 (285)
T ss_pred CCHHHHHHHHHHHCCceEeeEEEEC------------CCCCEEEEEC--CCcCCCEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 3458999999999999865443221 1233333333 2358999988876433223 134477888
Q ss_pred hhcCCcEEE
Q 029314 148 GSFQNHIFI 156 (195)
Q Consensus 148 ~~~Ga~~V~ 156 (195)
+++|++.+.
T Consensus 73 r~~ga~~i~ 81 (285)
T PRK00934 73 RDEGAKSIT 81 (285)
T ss_pred HHcCCCeEE
Confidence 999998655
No 90
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=74.04 E-value=48 Score=28.39 Aligned_cols=74 Identities=15% Similarity=0.098 Sum_probs=46.9
Q ss_pred CcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchH---HHHHHHHH
Q 029314 70 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGG---TLSAAIRL 146 (195)
Q Consensus 70 ~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~---Tl~~a~~~ 146 (195)
...-.+|..+|+.+|+|+.....++- ..|+..+.+. ..++|+.|+||-.....-. -+.-+++.
T Consensus 9 ~~~~~la~~ia~~lg~~~~~~~~~~F------------~dGE~~v~i~--~~v~g~~V~ivqs~~~~n~~l~elll~~~a 74 (301)
T PRK07199 9 PGNEAAAGRLAAALGVEVGRIELHRF------------PDGESYVRLD--SPVAGRTVVLVCSLDRPDEKLLPLLFAAEA 74 (301)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEEC------------CCCCEEEEEC--CCCCCCEEEEECCCCCCcHHHHHHHHHHHH
Confidence 34458999999999999864332211 1233333332 3358999999988654222 23346788
Q ss_pred HhhcCCcEEEE
Q 029314 147 LGSFQNHIFIL 157 (195)
Q Consensus 147 L~~~Ga~~V~~ 157 (195)
|+++|++.+.+
T Consensus 75 lr~~~a~~i~~ 85 (301)
T PRK07199 75 ARELGARRVGL 85 (301)
T ss_pred HHHcCCCeEEE
Confidence 89999987654
No 91
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=73.66 E-value=48 Score=28.72 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=44.9
Q ss_pred CcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchH----HHHHHHH
Q 029314 70 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGG----TLSAAIR 145 (195)
Q Consensus 70 ~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~----Tl~~a~~ 145 (195)
...-.+|..+|+.+|+|+..+..++- ..|+..+.+ ...++|+.|+||-....... =+.-+++
T Consensus 13 ~~~~~La~~ia~~lg~~l~~~~~~~F------------pdGE~~v~i--~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~ 78 (319)
T PRK04923 13 NANKPLAQSICKELGVRMGKALVTRF------------SDGEVQVEI--EESVRRQEVFVIQPTCAPSAENLMELLVLID 78 (319)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEEC------------CCCCEEEEE--CCCcCCCeEEEEecCCCCCchHHHHHHHHHH
Confidence 34458999999999999764432221 122222333 23348999999966433211 2334678
Q ss_pred HHhhcCCcEEE
Q 029314 146 LLGSFQNHIFI 156 (195)
Q Consensus 146 ~L~~~Ga~~V~ 156 (195)
.|+++|++.+.
T Consensus 79 alr~~~a~~i~ 89 (319)
T PRK04923 79 ALKRASAASVT 89 (319)
T ss_pred HHHHcCCcEEE
Confidence 88899998765
No 92
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=73.18 E-value=49 Score=28.46 Aligned_cols=72 Identities=15% Similarity=0.106 Sum_probs=44.6
Q ss_pred cchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccc-hHH---HHHHHHH
Q 029314 71 RGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GGT---LSAAIRL 146 (195)
Q Consensus 71 ~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tT-G~T---l~~a~~~ 146 (195)
..-.+|..+|+.+|.+...+..++- ..|+..+.+ ...++|+.|+||=..... -.. +.-+++.
T Consensus 8 ~~~~la~~ia~~lg~~~~~~~~~~F------------pdGE~~vri--~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~a 73 (309)
T PRK01259 8 ANPELAEKIAKYLGIPLGKASVGRF------------SDGEISVEI--NENVRGKDVFIIQSTCAPTNDNLMELLIMIDA 73 (309)
T ss_pred CCHHHHHHHHHHhCCceeeeEEEEC------------CCCCEEEEe--CCCCCCCEEEEECCCCCCCcHHHHHHHHHHHH
Confidence 4458999999999998754332211 123222333 233589999999664322 122 3457788
Q ss_pred HhhcCCcEEE
Q 029314 147 LGSFQNHIFI 156 (195)
Q Consensus 147 L~~~Ga~~V~ 156 (195)
++++|++.+.
T Consensus 74 lr~~ga~~i~ 83 (309)
T PRK01259 74 LKRASAGRIT 83 (309)
T ss_pred HHHcCCceEE
Confidence 8999998654
No 93
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=72.37 E-value=34 Score=29.35 Aligned_cols=68 Identities=13% Similarity=0.120 Sum_probs=42.0
Q ss_pred hHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccc-hHH---HHHHHHHHhhc
Q 029314 75 FGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GGT---LSAAIRLLGSF 150 (195)
Q Consensus 75 lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tT-G~T---l~~a~~~L~~~ 150 (195)
+|..+|+.+|+++.....++- ..|+-.+.+ ...++|+.|+||--.... -.. +.-+++.++++
T Consensus 1 la~~ia~~l~~~l~~~~~~~F------------~DGE~~vri--~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~ 66 (304)
T PRK03092 1 LAEEVAKELGVEVTPTTAYDF------------ANGEIYVRF--EESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRA 66 (304)
T ss_pred CHHHHHHHhCCceeeeEEEEC------------CCCCEEEEE--CCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHc
Confidence 578899999998764432221 112222222 233589999998765432 222 34577888999
Q ss_pred CCcEEE
Q 029314 151 QNHIFI 156 (195)
Q Consensus 151 Ga~~V~ 156 (195)
||+.+.
T Consensus 67 ~a~~i~ 72 (304)
T PRK03092 67 SAKRIT 72 (304)
T ss_pred CCCeEE
Confidence 998765
No 94
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=71.14 E-value=64 Score=28.13 Aligned_cols=74 Identities=12% Similarity=0.053 Sum_probs=46.5
Q ss_pred CCcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccc-hHH---HHHHH
Q 029314 69 EARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GGT---LSAAI 144 (195)
Q Consensus 69 ~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tT-G~T---l~~a~ 144 (195)
-...-.+|..+|+.+|+++..+..++- ..|+-.+.+ ...++|+.|+||-+.... -.. +.-++
T Consensus 15 ~~~~~~La~~ia~~lg~~l~~~~~~~F------------pdGE~~v~i--~~~vrg~dV~ivqs~~~p~nd~l~eLll~~ 80 (332)
T PRK00553 15 LSKAKKLVDSICRKLSMKPGEIVIQKF------------ADGETYIRF--DESVRNKDVVIFQSTCSPVNDSLMELLIAI 80 (332)
T ss_pred CCCCHHHHHHHHHHhCCceeeeEEEEC------------CCCCEEEEE--CCCCCCCEEEEEcCCCCCCchHHHHHHHHH
Confidence 344568999999999998765432221 123322333 233589999999875432 222 34477
Q ss_pred HHHhhcCCcEEE
Q 029314 145 RLLGSFQNHIFI 156 (195)
Q Consensus 145 ~~L~~~Ga~~V~ 156 (195)
+.|+++||+.+.
T Consensus 81 ~alr~~~a~~i~ 92 (332)
T PRK00553 81 DALKRGSAKSIT 92 (332)
T ss_pred HHHHHcCCCeEE
Confidence 888899998654
No 95
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=70.99 E-value=37 Score=29.09 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=43.1
Q ss_pred cchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEE-eeeccc-hH---HHHHHHH
Q 029314 71 RGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIV-DDLVAT-GG---TLSAAIR 145 (195)
Q Consensus 71 ~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLV-DDV~tT-G~---Tl~~a~~ 145 (195)
..-.+|..+|+.+|.++..+..++- ..|+..+.+. ..++|+.|+|| -..... -. =+.-+++
T Consensus 8 ~~~~la~~ia~~lg~~~~~~~~~~F------------pdGE~~v~i~--~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~ 73 (308)
T TIGR01251 8 SNQELAQKVAKNLGLPLGDVEVKRF------------PDGELYVRIN--ESVRGKDVFIIQQSTSAPVNDNLMELLIMID 73 (308)
T ss_pred CCHHHHHHHHHHhCCeeeeeEEEEC------------CCCCEEEEEC--CCCCCCeEEEEeCCCCCCccHHHHHHHHHHH
Confidence 3457999999999998865432221 1222223332 23488899888 543211 12 2344678
Q ss_pred HHhhcCCcEEE
Q 029314 146 LLGSFQNHIFI 156 (195)
Q Consensus 146 ~L~~~Ga~~V~ 156 (195)
.++++|++.+.
T Consensus 74 a~r~~ga~~i~ 84 (308)
T TIGR01251 74 ALKRASAKSIT 84 (308)
T ss_pred HHHHcCCCeEE
Confidence 88899998653
No 96
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=70.97 E-value=69 Score=27.70 Aligned_cols=73 Identities=10% Similarity=0.088 Sum_probs=45.1
Q ss_pred CcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccc-h-H--HHHHHHH
Q 029314 70 ARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-G-G--TLSAAIR 145 (195)
Q Consensus 70 ~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tT-G-~--Tl~~a~~ 145 (195)
...-.+|..+|+.+|+++..+..++- ..|+..+.+ ...++|+.|+||-..... - . -+.-+++
T Consensus 12 ~~~~~la~~ia~~lg~~l~~~~~~~F------------pdGE~~v~i--~~~vrg~dV~iv~s~~~~~nd~lmelll~~~ 77 (320)
T PRK02269 12 SSNKELAEKVAQEIGIELGKSSVRQF------------SDGEIQVNI--EESIRGHHVFILQSTSSPVNDNLMEILIMVD 77 (320)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEEC------------CCCCEEEEE--CCCCCCCEEEEEecCCCCccchHHHHHHHHH
Confidence 34458999999999998764432221 122222222 233589999999774321 1 1 2445778
Q ss_pred HHhhcCCcEEE
Q 029314 146 LLGSFQNHIFI 156 (195)
Q Consensus 146 ~L~~~Ga~~V~ 156 (195)
.|+++|++.+.
T Consensus 78 alr~~~a~~i~ 88 (320)
T PRK02269 78 ALKRASAESIN 88 (320)
T ss_pred HHHHhCCCeEE
Confidence 88999998763
No 97
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=68.44 E-value=13 Score=30.73 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhcCCcEEEEEEEEecCccCch-hHHHHhhhhcCceeeEEeecccc
Q 029314 138 GTLSAAIRLLGSFQNHIFILICIQMLNACFSS-YILLFSYATNGFTQFTITSEGVD 192 (195)
Q Consensus 138 ~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 192 (195)
+|..++.+.|+..|++.+++++ ++..+. ......+++.||++.++.|.|..
T Consensus 106 t~~~A~~~AL~alg~~RIalvT----PY~~~v~~~~~~~l~~~G~eV~~~~~~~~~ 157 (239)
T TIGR02990 106 TPSSAAVDGLAALGVRRISLLT----PYTPETSRPMAQYFAVRGFEIVNFTCLGLT 157 (239)
T ss_pred CHHHHHHHHHHHcCCCEEEEEC----CCcHHHHHHHHHHHHhCCcEEeeeeccCCC
Confidence 6778889999999999877653 444333 45577799999999999998874
No 98
>COG3535 Uncharacterized conserved protein [Function unknown]
Probab=67.89 E-value=85 Score=27.56 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=64.6
Q ss_pred cCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchH--hHHHHHHHhCCCEEEEecCCC-CCCceeeeeeeecccceeEEEe
Q 029314 41 LDTKAFRDTIDLFVERYKDKNISVVAGIEARGFI--FGPPIALAIGAKFVPMRKPKK-LPGEVISEEYSLEYGKDVMEMH 117 (195)
Q Consensus 41 ~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~--lA~~la~~l~~p~~~~rk~~~-~~~~~~~~~~~~~~~~~~~~~~ 117 (195)
.+++.+...-+.+.+.+. .++|.|++++.||++ +--..|..+|+|++..---++ .|.-+ ..+|++.
T Consensus 76 p~g~e~~ra~e~~~~~~~-k~v~ai~s~EiGG~Ns~ip~v~aa~~g~PvVD~DgmGRAfPElq----------MtTf~~~ 144 (357)
T COG3535 76 PNGDEAIRAFEVLEDYLG-KPVDAIISIEIGGINSLIPLVVAAQLGLPVVDGDGMGRAFPELQ----------MTTFYLH 144 (357)
T ss_pred CCcHHHHHHHHHHHHHhC-CceeEEEEeecCCcchhHHHHHHHhcCCceecCCcccccCcceE----------EEEEEEc
Confidence 355666566666655554 589999999999992 333457788999986533222 12111 1112221
Q ss_pred e----c---ccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEE
Q 029314 118 V----G---AVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIF 155 (195)
Q Consensus 118 ~----~---~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V 155 (195)
. + .-.+|..+++ ..++...+-+.+..+.-+.|+..-
T Consensus 145 g~~~tPlvi~d~~gn~~i~--e~v~n~w~ERiAR~~tv~~GG~~~ 187 (357)
T COG3535 145 GLPATPLVICDERGNRVII--ETVSNKWAERIARAATVEMGGSAA 187 (357)
T ss_pred CCCCCceEEEecCCCEEEE--EeecchhHHHHHHHHHHHcCCeEE
Confidence 1 0 1136766655 889999999999999999998753
No 99
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=66.43 E-value=37 Score=29.46 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=46.9
Q ss_pred chHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchH----HHHHHHHHH
Q 029314 72 GFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGG----TLSAAIRLL 147 (195)
Q Consensus 72 G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~----Tl~~a~~~L 147 (195)
--.+|..+|+.+++|+..+..++- ..|+-.+.+ .+-++|+.|.|+........ -+.-+++.+
T Consensus 13 ~~~La~~ia~~l~~~l~~~~~~rF------------~DGE~~V~i--~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~ 78 (314)
T COG0462 13 NPELAEKIAKRLGIPLGKVEVKRF------------PDGEIYVRI--EESVRGKDVFIIQSTSPPVNDNLMELLIMIDAL 78 (314)
T ss_pred CHHHHHHHHHHhCCCcccceeEEc------------CCCcEEEEe--cccccCCeEEEEeCCCCCcCHHHHHHHHHHHHH
Confidence 347999999999999864332211 123322333 34469999998876655333 233467889
Q ss_pred hhcCCcEEEEE
Q 029314 148 GSFQNHIFILI 158 (195)
Q Consensus 148 ~~~Ga~~V~~~ 158 (195)
+.+||+.+.++
T Consensus 79 k~asA~~It~V 89 (314)
T COG0462 79 KRASAKRITAV 89 (314)
T ss_pred HhcCCceEEEE
Confidence 99999987654
No 100
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=66.09 E-value=13 Score=30.60 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhcCCcEEEEEEEEecCccCchhHH-HHhhhhcCceeeEEeecccc
Q 029314 138 GTLSAAIRLLGSFQNHIFILICIQMLNACFSSYIL-LFSYATNGFTQFTITSEGVD 192 (195)
Q Consensus 138 ~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 192 (195)
+|--++++.|+..|++.+.+++ ++..+.... ...++.+||+.+.++|+|+-
T Consensus 104 Tts~Avv~aL~al~a~ri~vlT----PY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~ 155 (238)
T COG3473 104 TTSTAVVEALNALGAQRISVLT----PYIDEVNQREIEFLEANGFEIVDFKGLGIT 155 (238)
T ss_pred echHHHHHHHHhhCcceEEEec----cchhhhhhHHHHHHHhCCeEEEEeeccCCc
Confidence 3445668888999999876554 444444333 56699999999999999963
No 101
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=61.15 E-value=1.1e+02 Score=26.51 Aligned_cols=74 Identities=12% Similarity=0.099 Sum_probs=45.1
Q ss_pred CCcchHhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccc-hHH---HHHHH
Q 029314 69 EARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GGT---LSAAI 144 (195)
Q Consensus 69 ~~~G~~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tT-G~T---l~~a~ 144 (195)
-...-.+|..+|+.+|+++.....++- ..|+..+.+. ..++|+.|+||-..... -.. +..++
T Consensus 15 ~~~~~~la~~ia~~lg~~l~~~~~~~F------------pdGE~~v~i~--~~v~g~dV~ii~s~~~~~nd~l~eLll~~ 80 (323)
T PRK02458 15 LNSNLEIAEKIAQAAGVPLGKLSSRQF------------SDGEIMINIE--ESVRGDDIYIIQSTSFPVNDHLWELLIMI 80 (323)
T ss_pred CCCCHHHHHHHHHHhCCceeeeEEEEC------------CCCCEEEEec--CCcCCCeEEEEecCCCCCchHHHHHHHHH
Confidence 345568999999999998754332211 1233223332 33589999999765322 222 23466
Q ss_pred HHHhhcCCcEEE
Q 029314 145 RLLGSFQNHIFI 156 (195)
Q Consensus 145 ~~L~~~Ga~~V~ 156 (195)
+.|+++|++.+.
T Consensus 81 ~alr~~~a~~i~ 92 (323)
T PRK02458 81 DACKRASANTVN 92 (323)
T ss_pred HHHHHcCCceEE
Confidence 788899997654
No 102
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=60.67 E-value=40 Score=26.76 Aligned_cols=77 Identities=18% Similarity=0.213 Sum_probs=45.6
Q ss_pred CCCChHHHHHhhcccccCCCCCCCceEEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCC
Q 029314 7 KAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAK 86 (195)
Q Consensus 7 ~~~~~~~~~l~~~~r~~~~~p~~g~~~~d~~~i~~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p 86 (195)
++.+.+.+.|+..+.... +.+.|.+. +.-.+|...-.....+.+...+.. .+++|-.-||| +|..+|...++|
T Consensus 11 sp~S~Ka~~l~~~~~~~~----~~~~~~~p-~l~~~p~~a~~~l~~~i~~~~~~~-~~liGSSlGG~-~A~~La~~~~~~ 83 (187)
T PF05728_consen 11 SPQSFKAQALKQYFAEHG----PDIQYPCP-DLPPFPEEAIAQLEQLIEELKPEN-VVLIGSSLGGF-YATYLAERYGLP 83 (187)
T ss_pred CCCCHHHHHHHHHHHHhC----CCceEECC-CCCcCHHHHHHHHHHHHHhCCCCC-eEEEEEChHHH-HHHHHHHHhCCC
Confidence 667777777777765421 12222211 122345544333334433333222 58999999996 788999999999
Q ss_pred EEEE
Q 029314 87 FVPM 90 (195)
Q Consensus 87 ~~~~ 90 (195)
.+.+
T Consensus 84 avLi 87 (187)
T PF05728_consen 84 AVLI 87 (187)
T ss_pred EEEE
Confidence 8664
No 103
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=60.36 E-value=23 Score=30.52 Aligned_cols=42 Identities=17% Similarity=0.043 Sum_probs=37.1
Q ss_pred cCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEe
Q 029314 121 VQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQM 162 (195)
Q Consensus 121 ~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~ 162 (195)
.+.|++|+||--=-.......++.++|+++|+++.+...+-+
T Consensus 80 ~L~g~~V~vV~~p~a~~~~~~~v~~~L~~AGA~v~g~i~lt~ 121 (308)
T PF11382_consen 80 RLTGRSVAVVTLPGADDEDVDAVRELLEQAGATVTGRITLTD 121 (308)
T ss_pred ccCCCEEEEEEcCCCChHHHHHHHHHHHHCCCeEEEEEEEch
Confidence 359999999986667889999999999999999999998853
No 104
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=59.91 E-value=24 Score=26.18 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=29.9
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecC
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLN 164 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~ 164 (195)
++|++++|+ -+|++.++++..|.+.|++.+. +++++
T Consensus 10 l~~~~vlvi----GaGg~ar~v~~~L~~~g~~~i~---i~nRt 45 (135)
T PF01488_consen 10 LKGKRVLVI----GAGGAARAVAAALAALGAKEIT---IVNRT 45 (135)
T ss_dssp GTTSEEEEE----SSSHHHHHHHHHHHHTTSSEEE---EEESS
T ss_pred cCCCEEEEE----CCHHHHHHHHHHHHHcCCCEEE---EEECC
Confidence 489999986 7899999999999999999764 44554
No 105
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=58.89 E-value=39 Score=21.46 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=34.0
Q ss_pred EEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCchhHHHHhhhh
Q 029314 126 RALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACFSSYILLFSYAT 178 (195)
Q Consensus 126 ~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~~~ 178 (195)
+++|+.++ ||.-+...++.+++.|.....-+++ ....-.|.+..++++
T Consensus 2 ~~ll~~g~--~~~el~~~l~~~r~~~~~~~~kAvl---T~tN~~Wt~~~L~~E 49 (58)
T PF12646_consen 2 EFLLFSGF--SGEELDKFLDALRKAGIPIPLKAVL---TPTNINWTLKDLLEE 49 (58)
T ss_pred CEEEECCC--CHHHHHHHHHHHHHcCCCcceEEEE---CCCcccCcHHHHHHH
Confidence 45677776 8899999999999999955444444 333445777777654
No 106
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=55.84 E-value=1.4e+02 Score=26.03 Aligned_cols=76 Identities=12% Similarity=0.036 Sum_probs=45.7
Q ss_pred CCcchHhHHHHHHHh-CCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchHHH---HHHH
Q 029314 69 EARGFIFGPPIALAI-GAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTL---SAAI 144 (195)
Q Consensus 69 ~~~G~~lA~~la~~l-~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl---~~a~ 144 (195)
-...-.+|..+|+.+ |+|+..+..++- ..|+..+.++....++|+.|+||--..+. .-+ .-++
T Consensus 22 g~~~~~LA~~ia~~l~g~~l~~~~~~~F------------pDGE~~v~v~~~~~vrg~~V~ivqs~~~p-d~lmELLl~~ 88 (326)
T PLN02297 22 CEETEELARKIAAESDAIELGSINWRKF------------PDGFPNLFINNAHGIRGQHVAFLASFSSP-AVIFEQLSVI 88 (326)
T ss_pred CCCCHHHHHHHHHHhCCCceeeeEEEEC------------CCCCEEEEEcCCCCcCCCeEEEECCCCCC-hHHHHHHHHH
Confidence 344568999999996 788765433221 11221233332234589999998664433 222 2366
Q ss_pred HHHhhcCCcEEEE
Q 029314 145 RLLGSFQNHIFIL 157 (195)
Q Consensus 145 ~~L~~~Ga~~V~~ 157 (195)
+.|+++|++.+.+
T Consensus 89 dAlr~~ga~~i~~ 101 (326)
T PLN02297 89 YALPKLFVASFTL 101 (326)
T ss_pred HHHHHcCCCEEEE
Confidence 7788999987653
No 107
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=54.08 E-value=20 Score=28.19 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=20.8
Q ss_pred EEEEEeeeccchHHHHHHH-HHHhhcCCcEEEEEEEEec
Q 029314 126 RALIVDDLVATGGTLSAAI-RLLGSFQNHIFILICIQML 163 (195)
Q Consensus 126 ~VLLVDDV~tTG~Tl~~a~-~~L~~~Ga~~V~~~~lv~~ 163 (195)
.=+||||++..+.-+.... ++|. |..+..+.+.+..
T Consensus 84 ~~VIvD~v~~~~~~l~d~l~~~L~--~~~vl~VgV~Cpl 120 (174)
T PF07931_consen 84 NNVIVDDVFLGPRWLQDCLRRLLA--GLPVLFVGVRCPL 120 (174)
T ss_dssp -EEEEEE--TTTHHHHHHHHHHHT--TS-EEEEEEE--H
T ss_pred CCEEEecCccCcHHHHHHHHHHhC--CCceEEEEEECCH
Confidence 4578999999998766666 7776 4455555555543
No 108
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=50.31 E-value=1.7e+02 Score=25.48 Aligned_cols=128 Identities=13% Similarity=0.043 Sum_probs=73.1
Q ss_pred EechhhhcCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHh-CCCEEEEecCCCCCCceeeeeeeecccce
Q 029314 34 QDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAI-GAKFVPMRKPKKLPGEVISEEYSLEYGKD 112 (195)
Q Consensus 34 ~d~~~i~~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l-~~p~~~~rk~~~~~~~~~~~~~~~~~~~~ 112 (195)
+|..+-..|+.....++ +++....+|+|+++.. |-|..+..+. ++|.++.--.... +
T Consensus 65 i~~~na~~~~~~a~~ia----rql~~~~~dviv~i~t---p~Aq~~~s~~~~iPVV~aavtd~v-------------~-- 122 (322)
T COG2984 65 IDYQNAQGDLGTAAQIA----RQLVGDKPDVIVAIAT---PAAQALVSATKTIPVVFAAVTDPV-------------G-- 122 (322)
T ss_pred EEeecCCCChHHHHHHH----HHhhcCCCcEEEecCC---HHHHHHHHhcCCCCEEEEccCchh-------------h--
Confidence 45555556666655544 4455567899998865 7777776655 5788764321100 0
Q ss_pred eEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCch---hHHHHhhhhcCceeeEEee
Q 029314 113 VMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACFSS---YILLFSYATNGFTQFTITS 188 (195)
Q Consensus 113 ~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 188 (195)
..+......+|.+|--|-|....-.++....+++- +++.+++ +.+.++..+. ..+.+..++.|+.++...-
T Consensus 123 -a~Lv~~~~~pg~NvTGvsD~~~v~q~i~lik~~~P--nak~Igv--~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v 196 (322)
T COG2984 123 -AKLVKSLEQPGGNVTGVSDLLPVAQQIELIKALLP--NAKSIGV--LYNPGEANSVSLVEELKKEARKAGLEVVEAAV 196 (322)
T ss_pred -ccCCccccCCCCceeecCCcchHHHHHHHHHHhCC--CCeeEEE--EeCCCCcccHHHHHHHHHHHHHCCCEEEEEec
Confidence 00111112367788888888855555443333332 5566553 4545543333 4456668889998887654
No 109
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=49.45 E-value=27 Score=30.73 Aligned_cols=63 Identities=13% Similarity=0.057 Sum_probs=40.4
Q ss_pred CCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEE--EE---EEecCc--------------c--CchhHHHHhhhhcCc
Q 029314 123 AGERALIVDDLVATGGTLSAAIRLLGSFQNHIFIL--IC---IQMLNA--------------C--FSSYILLFSYATNGF 181 (195)
Q Consensus 123 ~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~--~~---lv~~~~--------------~--~~~~~~~~~~~~~~~ 181 (195)
..+.+++|| |...++..++++++..|.+..++ =+ ++|+.. . ......+..+...||
T Consensus 202 e~~~ivlVD---~~~d~~~~al~~a~~~g~~l~gVRlDs~gdl~DK~~~~~~~~~~~~~~~G~~~~l~~~vr~~Ld~~g~ 278 (352)
T PRK07188 202 EDELIALVD---YNNDVITDSLKVAREFGDKLKGVRVDTSKNMIDKYFIRHPEVLGTFDPRGVNPELIKALRKALDENGG 278 (352)
T ss_pred CCCeEEEEe---cCcccHHHHHHHHHHhCCCccEEEeCCcchHhhhhcccccccccccccccccHHHHHHHHHHHhhCCC
Confidence 336788999 44567788888888888877333 11 343310 1 122455777889999
Q ss_pred eeeEEee
Q 029314 182 TQFTITS 188 (195)
Q Consensus 182 ~~~~~~~ 188 (195)
+.++|.-
T Consensus 279 ~~vkI~a 285 (352)
T PRK07188 279 KHVKIIV 285 (352)
T ss_pred CCcEEEE
Confidence 9887753
No 110
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=47.99 E-value=39 Score=22.26 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=26.8
Q ss_pred cCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEE
Q 029314 121 VQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFI 156 (195)
Q Consensus 121 ~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~ 156 (195)
..+++.|++.+ .+|.....+...|++.|-+.+.
T Consensus 53 ~~~~~~iv~~c---~~g~~a~~~~~~l~~~G~~~v~ 85 (100)
T smart00450 53 LDKDKPVVVYC---RSGNRSAKAAWLLRELGFKNVY 85 (100)
T ss_pred CCCCCeEEEEe---CCCcHHHHHHHHHHHcCCCceE
Confidence 34778899998 6788888999999999987633
No 111
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=47.79 E-value=41 Score=25.79 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCccEEEEeC-CcchHhHHHHHHHhCCCEEE
Q 029314 49 TIDLFVERYKDKNISVVAGIE-ARGFIFGPPIALAIGAKFVP 89 (195)
Q Consensus 49 l~~~la~~~~~~~~D~Iv~v~-~~G~~lA~~la~~l~~p~~~ 89 (195)
.++.|++.+.+.++++|+... ..|--++..+|.+||.|++.
T Consensus 71 ~a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vt 112 (168)
T cd01715 71 YAPALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLIS 112 (168)
T ss_pred HHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCcee
Confidence 344455544445678777664 57779999999999999853
No 112
>PRK04195 replication factor C large subunit; Provisional
Probab=47.68 E-value=2.1e+02 Score=25.97 Aligned_cols=113 Identities=15% Similarity=0.248 Sum_probs=63.0
Q ss_pred echhhhcCHHHHHHHHHHHHHHhcC--CCccEEEEeCCcch-HhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccc
Q 029314 35 DITTLLLDTKAFRDTIDLFVERYKD--KNISVVAGIEARGF-IFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGK 111 (195)
Q Consensus 35 d~~~i~~~p~~~~~l~~~la~~~~~--~~~D~Iv~v~~~G~-~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~ 111 (195)
.+..+..+....+.+..++...... ...-++.|++--|= .+|..+|..++.+++............+.. ...
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~-----~i~ 86 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIER-----VAG 86 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHH-----HHH
Confidence 3567788888888888777654432 22335677776665 789999999998776542211000000000 000
Q ss_pred eeEEEeecccC-CCCEEEEEeee--ccch---HHHHHHHHHHhhcCCcE
Q 029314 112 DVMEMHVGAVQ-AGERALIVDDL--VATG---GTLSAAIRLLGSFQNHI 154 (195)
Q Consensus 112 ~~~~~~~~~~~-~Gk~VLLVDDV--~tTG---~Tl~~a~~~L~~~Ga~~ 154 (195)
... ....+. ..++|+|+||+ ++.. ..+.+..++++..+...
T Consensus 87 ~~~--~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~i 133 (482)
T PRK04195 87 EAA--TSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPI 133 (482)
T ss_pred Hhh--ccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCE
Confidence 000 001122 35789999987 3321 45677888888665443
No 113
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=46.97 E-value=43 Score=21.73 Aligned_cols=32 Identities=13% Similarity=0.089 Sum_probs=25.9
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEE
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFI 156 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~ 156 (195)
.+++.|+++++- |.....+...|++.|-..+.
T Consensus 48 ~~~~~vv~~c~~---~~~a~~~~~~l~~~G~~~v~ 79 (89)
T cd00158 48 DKDKPIVVYCRS---GNRSARAAKLLRKAGGTNVY 79 (89)
T ss_pred CCCCeEEEEeCC---CchHHHHHHHHHHhCcccEE
Confidence 477889998876 77888899999999966544
No 114
>PRK12342 hypothetical protein; Provisional
Probab=45.16 E-value=66 Score=26.96 Aligned_cols=40 Identities=5% Similarity=-0.049 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCCccEEEEeC----CcchHhHHHHHHHhCCCEEE
Q 029314 50 IDLFVERYKDKNISVVAGIE----ARGFIFGPPIALAIGAKFVP 89 (195)
Q Consensus 50 ~~~la~~~~~~~~D~Iv~v~----~~G~~lA~~la~~l~~p~~~ 89 (195)
+..|+..++...+|+|++=. ...-..+..+|..||+|++.
T Consensus 98 a~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt 141 (254)
T PRK12342 98 AKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVIN 141 (254)
T ss_pred HHHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEe
Confidence 44445444444689888743 22226778999999999864
No 115
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=45.02 E-value=27 Score=27.17 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhcCCcEEEEEEEEecCccCchhHHHHhhhhcCceeeEE
Q 029314 138 GTLSAAIRLLGSFQNHIFILICIQMLNACFSSYILLFSYATNGFTQFTI 186 (195)
Q Consensus 138 ~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (195)
+-+.+.++..++.|.+.+++++=+... .+...+.+.|+.+||++++.
T Consensus 41 tRveEiieFak~mgykkiGiAfCiGL~--~EA~~~~~iL~~~gFev~sV 87 (157)
T PF08901_consen 41 TRVEEIIEFAKRMGYKKIGIAFCIGLR--KEARILAKILEANGFEVYSV 87 (157)
T ss_pred chHHHHHHHHHHcCCCeeeehhhHhHH--HHHHHHHHHHHHCCCEEEEE
Confidence 457788999999999999988776444 34556778899999998875
No 116
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=43.83 E-value=40 Score=22.63 Aligned_cols=32 Identities=6% Similarity=-0.065 Sum_probs=26.6
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEE
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFI 156 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~ 156 (195)
.+++.|+++.. +|.+...++..|++.|-..+.
T Consensus 54 ~~~~~ivv~c~---~g~~s~~a~~~l~~~G~~~v~ 85 (96)
T cd01444 54 DRDRPVVVYCY---HGNSSAQLAQALREAGFTDVR 85 (96)
T ss_pred CCCCCEEEEeC---CCChHHHHHHHHHHcCCceEE
Confidence 47788999877 899999999999999987643
No 117
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=43.34 E-value=47 Score=22.54 Aligned_cols=31 Identities=13% Similarity=-0.021 Sum_probs=24.1
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEE
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIF 155 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V 155 (195)
.++++|+++++ +|.....++..|++.|-+.+
T Consensus 54 ~~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v 84 (96)
T cd01529 54 GRATRYVLTCD---GSLLARFAAQELLALGGKPV 84 (96)
T ss_pred CCCCCEEEEeC---ChHHHHHHHHHHHHcCCCCE
Confidence 36778999975 67777788888999997654
No 118
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=42.15 E-value=2.5e+02 Score=25.02 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=24.6
Q ss_pred cCCCCEEEEEeeecc---------------chHHHHH---HHHHHhhcCCcEEEE
Q 029314 121 VQAGERALIVDDLVA---------------TGGTLSA---AIRLLGSFQNHIFIL 157 (195)
Q Consensus 121 ~~~Gk~VLLVDDV~t---------------TG~Tl~~---a~~~L~~~Ga~~V~~ 157 (195)
.++|+.|+||-.... .-..+-+ +++.|+ +||+.+.+
T Consensus 74 ~Vrg~dV~ivqs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~ 127 (382)
T PRK06827 74 SVRGKDIYILQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITV 127 (382)
T ss_pred CCCCCeEEEEecCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEE
Confidence 359999999998642 1222333 788899 99986653
No 119
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=40.41 E-value=65 Score=22.43 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=16.6
Q ss_pred CCCEEEEEeeeccchHHHHHHHHHHhhcC
Q 029314 123 AGERALIVDDLVATGGTLSAAIRLLGSFQ 151 (195)
Q Consensus 123 ~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~G 151 (195)
.+.+||+||| .-.......+.|...|
T Consensus 4 ~~~~vLivdD---~~~~~~~~~~~l~~~g 29 (130)
T COG0784 4 SGLRVLVVDD---EPVNRRLLKRLLEDLG 29 (130)
T ss_pred CCcEEEEEcC---CHHHHHHHHHHHHHcC
Confidence 5678999999 3344444555566666
No 120
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=40.20 E-value=95 Score=19.58 Aligned_cols=51 Identities=20% Similarity=0.102 Sum_probs=35.7
Q ss_pred eccchHHHHHHHHHHhhcCCcEEEEEEEEecCcc-----Cc-hhHHHHhhhhcCcee
Q 029314 133 LVATGGTLSAAIRLLGSFQNHIFILICIQMLNAC-----FS-SYILLFSYATNGFTQ 183 (195)
Q Consensus 133 V~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~-----~~-~~~~~~~~~~~~~~~ 183 (195)
+=+.-+.+..+.++|.++|....+..+....... .. ...+.+.|++.||..
T Consensus 8 v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~~G~~v 64 (66)
T cd04908 8 LENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKEAGFAV 64 (66)
T ss_pred EcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHHCCCEE
Confidence 4445678999999999999988877764332211 12 237788899999874
No 121
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=39.86 E-value=54 Score=26.22 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHHhcCCCccEEEEeCCc----chHhHHHHHHHhCCCEE
Q 029314 42 DTKAFRDTIDLFVERYKDKNISVVAGIEAR----GFIFGPPIALAIGAKFV 88 (195)
Q Consensus 42 ~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~----G~~lA~~la~~l~~p~~ 88 (195)
+++.+.. .+++.+...++|+|+...+. |-.++..+|.+||.+++
T Consensus 92 ~~e~~a~---al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lv 139 (202)
T cd01714 92 DTLATAK---ALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQI 139 (202)
T ss_pred ChHHHHH---HHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCcc
Confidence 4554433 33333333457888777543 77999999999999975
No 122
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=37.80 E-value=57 Score=25.20 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCccEEEEeC-CcchHhHHHHHHHhCCCEEE
Q 029314 50 IDLFVERYKDKNISVVAGIE-ARGFIFGPPIALAIGAKFVP 89 (195)
Q Consensus 50 ~~~la~~~~~~~~D~Iv~v~-~~G~~lA~~la~~l~~p~~~ 89 (195)
++.|++.+.+.++|+|+... ..|-.++..+|.+||.|++.
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vs 120 (181)
T cd01985 80 AKALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQIS 120 (181)
T ss_pred HHHHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcce
Confidence 34444444444678776654 56778999999999999853
No 123
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=37.36 E-value=34 Score=26.00 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=28.3
Q ss_pred cCHHHHHHHHHHHHHHhcCCCccEEEEeC-CcchHhHHHHHHHhCCCEEE
Q 029314 41 LDTKAFRDTIDLFVERYKDKNISVVAGIE-ARGFIFGPPIALAIGAKFVP 89 (195)
Q Consensus 41 ~~p~~~~~l~~~la~~~~~~~~D~Iv~v~-~~G~~lA~~la~~l~~p~~~ 89 (195)
.+++.+......+.+. .++|+|+... ..|--++..+|.+|+.|++.
T Consensus 73 ~~~~~~a~~l~~~~~~---~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~ 119 (164)
T PF01012_consen 73 YDPEAYADALAELIKE---EGPDLVLFGSTSFGRDLAPRLAARLGAPLVT 119 (164)
T ss_dssp C-HHHHHHHHHHHHHH---HT-SEEEEESSHHHHHHHHHHHHHHT-EEEE
T ss_pred cCHHHHHHHHHHHHHh---cCCCEEEEcCcCCCCcHHHHHHHHhCCCccc
Confidence 3566544444444333 4677766654 56777999999999999864
No 124
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=37.05 E-value=61 Score=27.19 Aligned_cols=41 Identities=5% Similarity=0.007 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCccEEEEeC----CcchHhHHHHHHHhCCCEEE
Q 029314 49 TIDLFVERYKDKNISVVAGIE----ARGFIFGPPIALAIGAKFVP 89 (195)
Q Consensus 49 l~~~la~~~~~~~~D~Iv~v~----~~G~~lA~~la~~l~~p~~~ 89 (195)
.+..|+..++..++|+|++=. ...-..+..+|..||+|++.
T Consensus 100 tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt 144 (256)
T PRK03359 100 TASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAIN 144 (256)
T ss_pred HHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCcee
Confidence 344555555445689888743 22236788999999999864
No 125
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=36.29 E-value=69 Score=21.65 Aligned_cols=34 Identities=15% Similarity=0.297 Sum_probs=24.4
Q ss_pred EEEEEeeeccchHHHHHHHHHHhhc-C-CcEEEEEE
Q 029314 126 RALIVDDLVATGGTLSAAIRLLGSF-Q-NHIFILIC 159 (195)
Q Consensus 126 ~VLLVDDV~tTG~Tl~~a~~~L~~~-G-a~~V~~~~ 159 (195)
.+.+++|.-.+=..+.++.+.+++. + .+.+.++.
T Consensus 13 ~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G 48 (91)
T PF02875_consen 13 GPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFG 48 (91)
T ss_dssp TEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEc
Confidence 4778888999999999999999987 3 34444444
No 126
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=34.95 E-value=81 Score=26.55 Aligned_cols=33 Identities=36% Similarity=0.465 Sum_probs=27.5
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEE
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILI 158 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~ 158 (195)
.+|++|+|+ -+|++.++++..|.+.|++.+.++
T Consensus 123 ~~~k~vlvl----GaGGaarai~~aL~~~G~~~i~I~ 155 (282)
T TIGR01809 123 LAGFRGLVI----GAGGTSRAAVYALASLGVTDITVI 155 (282)
T ss_pred cCCceEEEE----cCcHHHHHHHHHHHHcCCCeEEEE
Confidence 478899865 899999999999999998865543
No 127
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=34.93 E-value=1.9e+02 Score=28.83 Aligned_cols=34 Identities=12% Similarity=0.036 Sum_probs=24.7
Q ss_pred cCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEE
Q 029314 121 VQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFIL 157 (195)
Q Consensus 121 ~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~ 157 (195)
...|.+||+|||--.. ...+.+.|++.|+.++.+
T Consensus 686 ~l~g~~vLlvdD~~~~---r~~l~~~L~~~G~~v~~a 719 (894)
T PRK10618 686 LLDGVTVLLDITSEEV---RKIVTRQLENWGATCITP 719 (894)
T ss_pred cCCCCEEEEEeCCHHH---HHHHHHHHHHCCCEEEEc
Confidence 3578899999987654 334556888999887643
No 128
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=34.58 E-value=77 Score=28.03 Aligned_cols=26 Identities=8% Similarity=0.119 Sum_probs=21.4
Q ss_pred CccEEEEeCCcchHhHHHHHHHhCCCEEE
Q 029314 61 NISVVAGIEARGFIFGPPIALAIGAKFVP 89 (195)
Q Consensus 61 ~~D~Iv~v~~~G~~lA~~la~~l~~p~~~ 89 (195)
++|+|+++ |||. +...|...++|++.
T Consensus 93 ~p~~v~~~--Gg~v-~~~aA~~~~~p~~~ 118 (396)
T TIGR03492 93 KGDLIVAV--GDIV-PLLFAWLSGKPYAF 118 (396)
T ss_pred cCCEEEEE--CcHH-HHHHHHHcCCCceE
Confidence 78999887 8887 66777888999876
No 129
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=34.34 E-value=1.1e+02 Score=29.11 Aligned_cols=45 Identities=18% Similarity=0.044 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEeCCcchHh-HHHHHHHhCC--CEEE
Q 029314 45 AFRDTIDLFVERYKDKNISVVAGIEARGFIF-GPPIALAIGA--KFVP 89 (195)
Q Consensus 45 ~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~l-A~~la~~l~~--p~~~ 89 (195)
.+..+.+.+.+.+.+.+||+++.++.-||++ -..-++..|+ |+++
T Consensus 294 ~l~~~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviy 341 (608)
T PRK01021 294 KLWYRYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVH 341 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEE
Confidence 3344555566666667899999999999954 3344566675 7754
No 130
>PRK13584 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=33.58 E-value=22 Score=28.91 Aligned_cols=19 Identities=32% Similarity=0.116 Sum_probs=13.3
Q ss_pred eeeccchHHHHHHHHHHhhcCCcEEE
Q 029314 131 DDLVATGGTLSAAIRLLGSFQNHIFI 156 (195)
Q Consensus 131 DDV~tTG~Tl~~a~~~L~~~Ga~~V~ 156 (195)
=|++.||+|++ ++|-+++.
T Consensus 149 vDiv~TG~TLr-------~NgL~~~e 167 (204)
T PRK13584 149 VDIVQTGTTLK-------ANGLVEKQ 167 (204)
T ss_pred EEEECccHHHH-------HCCCEEEE
Confidence 38999999965 45655543
No 131
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=33.44 E-value=2.3e+02 Score=22.34 Aligned_cols=63 Identities=14% Similarity=0.049 Sum_probs=37.0
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCchhHHHHhhhhcCceeeEEee
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACFSSYILLFSYATNGFTQFTITS 188 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (195)
..|++||+. .....-....+.|++.|+.+..+.+.-..............+....+..+-+||
T Consensus 123 ~~~~~ili~----~~~~~~~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~ivftS 185 (249)
T PRK05928 123 LKGKRVLYL----RGNGGREVLGDTLEERGAEVDECEVYERVPPKLDGAELLARLQSGEVDAVIFTS 185 (249)
T ss_pred cCCCEEEEE----CCCCCHHHHHHHHHHCCCEEeEEEEEEeeCCCCChHHHHHHHHhCCCCEEEECC
Confidence 478999987 333445567889999999877766654333221222222333334566666655
No 132
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=33.18 E-value=1.2e+02 Score=26.48 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=27.9
Q ss_pred HHHHHhcCCCccEEEEeCCcchHhHH-HHHHHhCCCEEEE
Q 029314 52 LFVERYKDKNISVVAGIEARGFIFGP-PIALAIGAKFVPM 90 (195)
Q Consensus 52 ~la~~~~~~~~D~Iv~v~~~G~~lA~-~la~~l~~p~~~~ 90 (195)
...+.+++.+||+|+++..-|+++.. .-|+.+++|+++.
T Consensus 80 ~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 80 EVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred HHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 33445566789999999988887432 3466789998764
No 133
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=32.77 E-value=43 Score=32.65 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=23.5
Q ss_pred EEEEeCCcch-HhHHHHHHHhCCCEEEE
Q 029314 64 VVAGIEARGF-IFGPPIALAIGAKFVPM 90 (195)
Q Consensus 64 ~Iv~v~~~G~-~lA~~la~~l~~p~~~~ 90 (195)
+++|+|--|- .+|.++|-..|+||+.+
T Consensus 348 LL~GPPGTGKTLLAKAiAGEAgVPF~sv 375 (774)
T KOG0731|consen 348 LLVGPPGTGKTLLAKAIAGEAGVPFFSV 375 (774)
T ss_pred EEECCCCCcHHHHHHHHhcccCCceeee
Confidence 7888987776 78999999999999865
No 134
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.68 E-value=1.7e+02 Score=23.28 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=22.1
Q ss_pred CCccEEEEeCC------cch--HhHHHHHHHhCCCEEE
Q 029314 60 KNISVVAGIEA------RGF--IFGPPIALAIGAKFVP 89 (195)
Q Consensus 60 ~~~D~Iv~v~~------~G~--~lA~~la~~l~~p~~~ 89 (195)
++||+|++-.. |-. ..|.+||+.+++|+..
T Consensus 123 E~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfE 160 (219)
T KOG0081|consen 123 ENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFE 160 (219)
T ss_pred CCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeee
Confidence 47898888542 222 5788999999999864
No 135
>PF01634 HisG: ATP phosphoribosyltransferase; InterPro: IPR013820 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. ATP phosphoribosyltransferase is found in two distinct forms: a long form containing two catalytic domains and a C-terminal regulatory domain, and a short form in which the regulatory domain is missing. The long form is catalytically competent, but in organisms with the short form, a histidyl-tRNA synthetase paralogue, HisZ, is required for enzyme activity []. This entry represents the catalytic region of this enzyme. The structures of the long form enzymes from Escherichia coli (P60757 from SWISSPROT) and Mycobacterium tuberculosis (P60759 from SWISSPROT) have been determined [, ]. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. The two catalytic domains are linked by a two-stranded beta-sheet and togther form a "periplasmic binding protein fold". A crevice between these domains contains the active site. The C-terminal domain is not directly involved in catalysis but appears to be involved the formation of hexamers, induced by the binding of inhibitors such as histidine to the enzyme, thus regulating activity.; GO: 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1VE4_A 2VD3_B 1NH7_A 1NH8_A 1Z7N_G 1Z7M_E 1O64_A 1O63_A 1USY_F 1Q1K_A ....
Probab=30.91 E-value=27 Score=27.28 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=12.8
Q ss_pred eeccchHHHHHHHHHHhhcCCcEE
Q 029314 132 DLVATGGTLSAAIRLLGSFQNHIF 155 (195)
Q Consensus 132 DV~tTG~Tl~~a~~~L~~~Ga~~V 155 (195)
|++.||+||+ ++|-+++
T Consensus 112 Div~TG~TLr-------~NgL~~i 128 (163)
T PF01634_consen 112 DIVETGTTLR-------ANGLKEI 128 (163)
T ss_dssp EEESSSHHHH-------HTTEEEE
T ss_pred EeccCcHHHH-------HCCCEEe
Confidence 8999999964 5566655
No 136
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed
Probab=30.59 E-value=26 Score=28.64 Aligned_cols=11 Identities=64% Similarity=0.881 Sum_probs=9.2
Q ss_pred eeccchHHHHH
Q 029314 132 DLVATGGTLSA 142 (195)
Q Consensus 132 DV~tTG~Tl~~ 142 (195)
|++.||+||++
T Consensus 160 DivsTG~TLr~ 170 (215)
T PRK01686 160 DIVETGNTLRA 170 (215)
T ss_pred EeecChHHHHH
Confidence 89999999654
No 137
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=30.26 E-value=93 Score=21.17 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=23.0
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhcCCc
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSFQNH 153 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~ 153 (195)
.+++.|+++ +.+|.....+++.|++.|-.
T Consensus 59 ~~~~~ivv~---C~~G~rs~~aa~~L~~~G~~ 87 (100)
T cd01523 59 PDDQEVTVI---CAKEGSSQFVAELLAERGYD 87 (100)
T ss_pred CCCCeEEEE---cCCCCcHHHHHHHHHHcCce
Confidence 366777776 67888888889999999876
No 138
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=30.26 E-value=89 Score=25.78 Aligned_cols=19 Identities=37% Similarity=0.552 Sum_probs=10.4
Q ss_pred ccchHHHHHHHHHHhhcCC
Q 029314 134 VATGGTLSAAIRLLGSFQN 152 (195)
Q Consensus 134 ~tTG~Tl~~a~~~L~~~Ga 152 (195)
+-|-+|+.++...++...+
T Consensus 29 vg~A~~~~ea~~~i~~~~p 47 (224)
T COG4565 29 VGTAGTLEEAKMIIEEFKP 47 (224)
T ss_pred EEeeccHHHHHHHHHhhCC
Confidence 3444555666666665544
No 139
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=30.16 E-value=1.9e+02 Score=23.43 Aligned_cols=51 Identities=10% Similarity=-0.016 Sum_probs=35.2
Q ss_pred ccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCchhHHHHhhhhcCceeeEEee
Q 029314 134 VATGGTLSAAIRLLGSFQNHIFILICIQMLNACFSSYILLFSYATNGFTQFTITS 188 (195)
Q Consensus 134 ~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (195)
-.+|+.+++.++.+++.+-...-++++.++++. .+....++.|++.+.+..
T Consensus 7 Sg~Gsn~~al~~~~~~~~l~~~i~~visn~~~~----~~~~~A~~~gIp~~~~~~ 57 (207)
T PLN02331 7 SGGGSNFRAIHDACLDGRVNGDVVVVVTNKPGC----GGAEYARENGIPVLVYPK 57 (207)
T ss_pred eCCChhHHHHHHHHHcCCCCeEEEEEEEeCCCC----hHHHHHHHhCCCEEEecc
Confidence 457899999999988776544446666666543 346667777888877654
No 140
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=29.87 E-value=1.3e+02 Score=26.62 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=28.3
Q ss_pred HHHHhcCCCccEEEEeCCcch-HhHHHHHHHhCCCEEEE
Q 029314 53 FVERYKDKNISVVAGIEARGF-IFGPPIALAIGAKFVPM 90 (195)
Q Consensus 53 la~~~~~~~~D~Iv~v~~~G~-~lA~~la~~l~~p~~~~ 90 (195)
+.....+.+.|+|+|+--|-. -.|..+|..+++|++.+
T Consensus 76 ~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~~~pfIsv 114 (360)
T COG0371 76 LAAEAGEDGADVVIGVGGGKTIDTAKAAAYRLGLPFISV 114 (360)
T ss_pred HHHHhcccCCCEEEEecCcHHHHHHHHHHHHcCCCEEEe
Confidence 333333346799999976554 68999999999999865
No 141
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=29.76 E-value=84 Score=26.01 Aligned_cols=51 Identities=16% Similarity=0.046 Sum_probs=33.6
Q ss_pred ccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCchhHHHHhhhhcCceeeEEeecc
Q 029314 134 VATGGTLSAAIRLLGSFQNHIFILICIQMLNACFSSYILLFSYATNGFTQFTITSEG 190 (195)
Q Consensus 134 ~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (195)
+-||+|+...++.|-+.-.....+.++ -+++.-..+++++|++..++....
T Consensus 26 lGTGST~~~fI~~Lg~~~~~e~~i~~V------~TS~~t~~l~~~~GI~v~~l~~~~ 76 (227)
T COG0120 26 LGTGSTAAYFIEALGRRVKGELDIGGV------PTSFQTEELARELGIPVSSLNEVD 76 (227)
T ss_pred EcCcHHHHHHHHHHHHhhccCccEEEE------eCCHHHHHHHHHcCCeecCccccC
Confidence 689999999999996411111112222 233556778899999998887653
No 142
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=29.56 E-value=1.3e+02 Score=21.04 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=24.4
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEE
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFI 156 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~ 156 (195)
++|++|||| -.|.....-++.|.+.||++.-
T Consensus 5 l~~~~vlVv----GgG~va~~k~~~Ll~~gA~v~v 35 (103)
T PF13241_consen 5 LKGKRVLVV----GGGPVAARKARLLLEAGAKVTV 35 (103)
T ss_dssp -TT-EEEEE----EESHHHHHHHHHHCCCTBEEEE
T ss_pred cCCCEEEEE----CCCHHHHHHHHHHHhCCCEEEE
Confidence 489999986 5599999999999999987643
No 143
>PF14502 HTH_41: Helix-turn-helix domain
Probab=28.65 E-value=67 Score=19.93 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=16.4
Q ss_pred chHHHHHHHHHHhhcCCcEE
Q 029314 136 TGGTLSAAIRLLGSFQNHIF 155 (195)
Q Consensus 136 TG~Tl~~a~~~L~~~Ga~~V 155 (195)
+=+|++.|.+.|++.||...
T Consensus 19 s~GtiQ~Alk~Le~~gaI~L 38 (48)
T PF14502_consen 19 SRGTIQNALKFLEENGAIKL 38 (48)
T ss_pred chhHHHHHHHHHHHCCcEEe
Confidence 34799999999999998643
No 144
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=28.64 E-value=1.7e+02 Score=21.99 Aligned_cols=44 Identities=14% Similarity=-0.034 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhcCCcEEEEEEEEecCccC-------chhHHHHhhhhcCcee
Q 029314 139 TLSAAIRLLGSFQNHIFILICIQMLNACF-------SSYILLFSYATNGFTQ 183 (195)
Q Consensus 139 Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~-------~~~~~~~~~~~~~~~~ 183 (195)
-+..+++.|+++|-+ +.++++++.+.+. ....+...|++.||.+
T Consensus 16 RL~~~~~~L~eagIN-iRA~tiAdt~dFGIiRmvV~~~d~A~~~Lee~gF~V 66 (142)
T COG4747 16 RLASVANKLKEAGIN-IRAFTIADTGDFGIIRMVVDRPDEAHSVLEEAGFTV 66 (142)
T ss_pred hHHHHHHHHHHcCCc-eEEEEeccccCcceEEEEcCChHHHHHHHHHCCcEE
Confidence 478889999999855 5788888877641 3355677799999864
No 145
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=28.58 E-value=1.2e+02 Score=20.72 Aligned_cols=31 Identities=16% Similarity=0.041 Sum_probs=22.9
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEE
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIF 155 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V 155 (195)
.+++.|++..+ +|..-..++..|++.|-+.+
T Consensus 59 ~~~~~ivvyC~---~G~rs~~a~~~L~~~G~~~v 89 (101)
T cd01518 59 LKGKKVLMYCT---GGIRCEKASAYLKERGFKNV 89 (101)
T ss_pred cCCCEEEEECC---CchhHHHHHHHHHHhCCcce
Confidence 36778888864 67777777888888887643
No 146
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=28.31 E-value=29 Score=29.78 Aligned_cols=19 Identities=32% Similarity=0.246 Sum_probs=13.4
Q ss_pred eeeccchHHHHHHHHHHhhcCCcEEE
Q 029314 131 DDLVATGGTLSAAIRLLGSFQNHIFI 156 (195)
Q Consensus 131 DDV~tTG~Tl~~a~~~L~~~Ga~~V~ 156 (195)
=|+++||+||+ ++|-+.+.
T Consensus 160 vDivsTG~TLk-------aNgL~~id 178 (290)
T COG0040 160 VDIVSTGTTLK-------ANGLKEIE 178 (290)
T ss_pred EEeecCCHhHH-------HCCCEEEE
Confidence 38999999965 45655553
No 147
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=27.93 E-value=1.2e+02 Score=26.05 Aligned_cols=71 Identities=10% Similarity=0.061 Sum_probs=43.5
Q ss_pred HhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCc
Q 029314 74 IFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNH 153 (195)
Q Consensus 74 ~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~ 153 (195)
.....++...++|++-.--...+|.+.+..-+... . ..+. ++|.+|.+|=| .++|++..+.++...|++
T Consensus 110 ~~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~Ti~---e----~~g~-l~gl~i~~vGd---~~~v~~Sl~~~l~~~g~~ 178 (304)
T PRK00779 110 ETLEELAEYSTVPVINGLTDLSHPCQILADLLTIY---E----HRGS-LKGLKVAWVGD---GNNVANSLLLAAALLGFD 178 (304)
T ss_pred hHHHHHHHhCCCCEEeCCCCCCChHHHHHHHHHHH---H----HhCC-cCCcEEEEEeC---CCccHHHHHHHHHHcCCE
Confidence 34566788888888765322223333222111100 0 0133 48999999988 467999999999999976
Q ss_pred EE
Q 029314 154 IF 155 (195)
Q Consensus 154 ~V 155 (195)
+.
T Consensus 179 v~ 180 (304)
T PRK00779 179 LR 180 (304)
T ss_pred EE
Confidence 43
No 148
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=27.56 E-value=1.7e+02 Score=23.80 Aligned_cols=50 Identities=18% Similarity=0.132 Sum_probs=33.0
Q ss_pred ccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCchhHHHHhhhhcCceeeEEe
Q 029314 134 VATGGTLSAAIRLLGSFQNHIFILICIQMLNACFSSYILLFSYATNGFTQFTIT 187 (195)
Q Consensus 134 ~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (195)
--+|+.+++.++.++......--.+++.|+++. .++..-++.|++.+.+.
T Consensus 8 SG~GSNlqaiida~~~~~~~a~i~~Visd~~~A----~~lerA~~~gIpt~~~~ 57 (200)
T COG0299 8 SGNGSNLQAIIDAIKGGKLDAEIVAVISDKADA----YALERAAKAGIPTVVLD 57 (200)
T ss_pred eCCcccHHHHHHHHhcCCCCcEEEEEEeCCCCC----HHHHHHHHcCCCEEEec
Confidence 458999999999999443333345556666543 45666777777766554
No 149
>COG3150 Predicted esterase [General function prediction only]
Probab=27.54 E-value=1.5e+02 Score=23.66 Aligned_cols=49 Identities=16% Similarity=0.311 Sum_probs=32.6
Q ss_pred hhcCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEE
Q 029314 39 LLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP 89 (195)
Q Consensus 39 i~~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~ 89 (195)
+-.+|..+-.-.+.+.....+.. -.|||+.-||+ +|+.|+...|++-++
T Consensus 38 l~h~p~~a~~ele~~i~~~~~~~-p~ivGssLGGY-~At~l~~~~Girav~ 86 (191)
T COG3150 38 LPHDPQQALKELEKAVQELGDES-PLIVGSSLGGY-YATWLGFLCGIRAVV 86 (191)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC-ceEEeecchHH-HHHHHHHHhCChhhh
Confidence 33456544444444444444334 38999999997 899999999987654
No 150
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=26.91 E-value=1.3e+02 Score=26.63 Aligned_cols=41 Identities=24% Similarity=0.252 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCCCccEEEEeCCcchHh-HHHHHHHhCCC
Q 029314 46 FRDTIDLFVERYKDKNISVVAGIEARGFIF-GPPIALAIGAK 86 (195)
Q Consensus 46 ~~~l~~~la~~~~~~~~D~Iv~v~~~G~~l-A~~la~~l~~p 86 (195)
+..+.+.+.+.+...++|++|.++.-||++ -..-++..+.+
T Consensus 67 ~~~~~~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~ 108 (373)
T PF02684_consen 67 LKRLFRKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIP 108 (373)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCC
Confidence 344445556666667999999999999954 22344556666
No 151
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=26.88 E-value=2.9e+02 Score=22.17 Aligned_cols=63 Identities=16% Similarity=0.114 Sum_probs=37.6
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCchhHHHHhhhhcCceeeEEee
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACFSSYILLFSYATNGFTQFTITS 188 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (195)
.+|++||++= ..++. ....+.|++.|+.+..+.+--..............++...+..+.++|
T Consensus 116 ~~~~~vL~~r---g~~~r-~~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~i~f~S 178 (240)
T PRK09189 116 APTARLLYLA---GRPRA-PVFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAILGGAPFDAVLLYS 178 (240)
T ss_pred CCCCcEEEec---cCccc-chhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHHhcCCCCEEEEeC
Confidence 3678888873 22222 456788999998876665543222222223445556666777777776
No 152
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=26.40 E-value=2.3e+02 Score=24.48 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=24.0
Q ss_pred HHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEE
Q 029314 54 VERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP 89 (195)
Q Consensus 54 a~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~ 89 (195)
.+.+.+.++|+|+.-. ....|..+|+.+|+|++.
T Consensus 85 ~~~~~~~~pDlVi~d~--~~~~~~~~A~~~giP~v~ 118 (392)
T TIGR01426 85 EEAYKGDRPDLIVYDI--ASWTGRLLARKWDVPVIS 118 (392)
T ss_pred HHHhcCCCCCEEEECC--ccHHHHHHHHHhCCCEEE
Confidence 3344556789887754 345678889999999864
No 153
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=26.37 E-value=2.9e+02 Score=20.85 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=40.7
Q ss_pred HhHHHHHHHhCCCEEEEecCCC-CCCceeeeeeeecccceeEEEeecccCCCCEEEEEeeeccc-hHHHHHHHHHHhhcC
Q 029314 74 IFGPPIALAIGAKFVPMRKPKK-LPGEVISEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVAT-GGTLSAAIRLLGSFQ 151 (195)
Q Consensus 74 ~lA~~la~~l~~p~~~~rk~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gk~VLLVDDV~tT-G~Tl~~a~~~L~~~G 151 (195)
.+|..+|..++..+.-++-... .|.+..-..+ .....+.+++..+.+. .+|+|+|.+-.. =.|-.++.+++.+..
T Consensus 14 ~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v-~~~~~~~f~~~~GPif--~~ill~DEiNrappktQsAlLeam~Er~ 90 (131)
T PF07726_consen 14 TLAKALARSLGLSFKRIQFTPDLLPSDILGFPV-YDQETGEFEFRPGPIF--TNILLADEINRAPPKTQSALLEAMEERQ 90 (131)
T ss_dssp HHHHHHHHHTT--EEEEE--TT--HHHHHEEEE-EETTTTEEEEEE-TT---SSEEEEETGGGS-HHHHHHHHHHHHHSE
T ss_pred HHHHHHHHHcCCceeEEEecCCCCcccceeeee-eccCCCeeEeecChhh--hceeeecccccCCHHHHHHHHHHHHcCe
Confidence 6888999999988753332211 1222211111 1122355667666654 469999999654 566666777777654
No 154
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=26.01 E-value=2.9e+02 Score=24.64 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=35.4
Q ss_pred CCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCch-hHHHHhhhhcCceee
Q 029314 123 AGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACFSS-YILLFSYATNGFTQF 184 (195)
Q Consensus 123 ~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~-~~~~~~~~~~~~~~~ 184 (195)
.|++|+||. .|.|...++..+...|++.|.++..-+.. ..+. ......+++.|+...
T Consensus 272 ~g~~VvViG----gG~~g~e~A~~l~~~G~~~Vtlv~~~~~~-~~~~~~~~~~~~~~~GV~i~ 329 (457)
T PRK11749 272 VGKRVVVIG----GGNTAMDAARTAKRLGAESVTIVYRRGRE-EMPASEEEVEHAKEEGVEFE 329 (457)
T ss_pred CCCeEEEEC----CCHHHHHHHHHHHHcCCCeEEEeeecCcc-cCCCCHHHHHHHHHCCCEEE
Confidence 688999986 57888888888888998766654331111 1222 223444666776544
No 155
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=25.88 E-value=1.3e+02 Score=23.11 Aligned_cols=59 Identities=10% Similarity=0.034 Sum_probs=34.9
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEE---EEecCccCch---hHHHHhhhhcCce
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILIC---IQMLNACFSS---YILLFSYATNGFT 182 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~---lv~~~~~~~~---~~~~~~~~~~~~~ 182 (195)
++||+|+|+-|- -|---.+..+.++..|++++.+.+ ++...+.+.- ++..++-++.|-+
T Consensus 3 l~gkKviiiGdR--DGiPgpAie~c~~~~gaevvfs~TeCFVctaagaMDLEnQ~rvk~~aEk~g~e 67 (150)
T PF04723_consen 3 LEGKKVIIIGDR--DGIPGPAIEECVKTAGAEVVFSSTECFVCTAAGAMDLENQQRVKDLAEKYGAE 67 (150)
T ss_pred cCCcEEEEEecC--CCCCcHHHHHHHHhcCceEEEEeeeEEEecccccccHHHHHHHHHHHHhcCCc
Confidence 589999999874 344445556667788998877653 2222332222 3445556666543
No 156
>TIGR00070 hisG ATP phosphoribosyltransferase. Members of this family from B. subtilis, Aquifex aeolicus, and Synechocystis PCC6803 (and related taxa) lack the C-terminal third of the sequence. The sole homolog from Archaeoglobus fulgidus lacks the N-terminal 50 residues (as reported) and is otherwise atypical of the rest of the family. This model excludes the C-terminal extension.
Probab=25.82 E-value=37 Score=27.04 Aligned_cols=26 Identities=38% Similarity=0.386 Sum_probs=16.7
Q ss_pred CCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEE
Q 029314 123 AGERALIVDDLVATGGTLSAAIRLLGSFQNHIFI 156 (195)
Q Consensus 123 ~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~ 156 (195)
.|--=.|| |++.||+|+++ +|-+++.
T Consensus 146 ~GlaD~Iv-Div~TG~TL~~-------NgL~~ie 171 (182)
T TIGR00070 146 LGLADAIV-DIVSTGTTLRE-------NGLRIIE 171 (182)
T ss_pred CCceeEEE-EEeCCHHHHHH-------CCCEEee
Confidence 44333344 78999999876 5655553
No 157
>PRK13583 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=25.79 E-value=30 Score=28.62 Aligned_cols=11 Identities=55% Similarity=0.776 Sum_probs=9.3
Q ss_pred eeccchHHHHH
Q 029314 132 DLVATGGTLSA 142 (195)
Q Consensus 132 DV~tTG~Tl~~ 142 (195)
|++.||+||++
T Consensus 177 DivsTG~TLr~ 187 (228)
T PRK13583 177 DITSTGETLRA 187 (228)
T ss_pred hhhchhHHHHH
Confidence 89999999754
No 158
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=25.58 E-value=77 Score=25.10 Aligned_cols=56 Identities=13% Similarity=0.028 Sum_probs=40.4
Q ss_pred chHHHHHHHHHHhhcCCcEEEEEEEEecCcc-----CchhHHHHhhhhcCceeeEEeeccc
Q 029314 136 TGGTLSAAIRLLGSFQNHIFILICIQMLNAC-----FSSYILLFSYATNGFTQFTITSEGV 191 (195)
Q Consensus 136 TG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (195)
+=+|+++..++|.++....+.+-.+...+=. -+......+++++||.|+-.-..+.
T Consensus 46 rlSt~k~Il~aL~e~e~~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k 106 (187)
T COG3620 46 RLSTVKRILEALEEAEKTRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDK 106 (187)
T ss_pred cHHHHHHHHHHHHHhhcceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeCCe
Confidence 3388999999999887777777777655432 2445667889999999886655543
No 159
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=25.35 E-value=95 Score=21.37 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=11.8
Q ss_pred eccchHHHHHHHHHHhhcCCcEEEEE
Q 029314 133 LVATGGTLSAAIRLLGSFQNHIFILI 158 (195)
Q Consensus 133 V~tTG~Tl~~a~~~L~~~Ga~~V~~~ 158 (195)
++.|++| .+.|+++|-.+..+.
T Consensus 16 i~AT~gT----a~~L~~~Gi~~~~v~ 37 (95)
T PF02142_consen 16 IYATEGT----AKFLKEHGIEVTEVV 37 (95)
T ss_dssp EEEEHHH----HHHHHHTT--EEECC
T ss_pred EEEChHH----HHHHHHcCCCceeee
Confidence 5666776 566666666544433
No 160
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=24.98 E-value=3.1e+02 Score=25.90 Aligned_cols=57 Identities=11% Similarity=-0.002 Sum_probs=35.7
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCc-cCchhH-HHHhhhhcCceee
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNA-CFSSYI-LLFSYATNGFTQF 184 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~-~~~~~~-~~~~~~~~~~~~~ 184 (195)
..|++|+||- .|.|...++..+...|++.|.++.. .+. ..+.+. ....+++.|+..+
T Consensus 466 ~~gk~VvVIG----gG~~a~d~A~~a~r~ga~~Vt~i~~--~~~~~~~~~~~e~~~~~~~Gv~~~ 524 (654)
T PRK12769 466 TAGLNVVVLG----GGDTAMDCVRTALRHGASNVTCAYR--RDEANMPGSKKEVKNAREEGANFE 524 (654)
T ss_pred CCCCeEEEEC----CcHHHHHHHHHHHHcCCCeEEEeEe--cCCCCCCCCHHHHHHHHHcCCeEE
Confidence 3688999985 8888888888888899977654332 222 133222 2344666776543
No 161
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=24.98 E-value=2.2e+02 Score=20.39 Aligned_cols=86 Identities=13% Similarity=0.171 Sum_probs=45.1
Q ss_pred EEEEeCCcch-HhHHHHHHHhCCCEEEEecCCCCCCceeeeeeeecccceeEEEeecccC---CCCEEEEEeeeccchHH
Q 029314 64 VVAGIEARGF-IFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGKDVMEMHVGAVQ---AGERALIVDDLVATGGT 139 (195)
Q Consensus 64 ~Iv~v~~~G~-~lA~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~Gk~VLLVDDV~tTG~T 139 (195)
+++|++--|= .++..+|..++.++..+.-........+...+....+...+ ..+.+. +...++++|++=..-.+
T Consensus 3 lL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~--~~~~l~~a~~~~~il~lDEin~a~~~ 80 (139)
T PF07728_consen 3 LLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEF--KDGPLVRAMRKGGILVLDEINRAPPE 80 (139)
T ss_dssp EEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCE--EE-CCCTTHHEEEEEEESSCGG--HH
T ss_pred EEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccc--ccccccccccceeEEEECCcccCCHH
Confidence 4566665554 78999999999888665433221111111122211122122 222222 34689999999876677
Q ss_pred HHHHHHHHhhcC
Q 029314 140 LSAAIRLLGSFQ 151 (195)
Q Consensus 140 l~~a~~~L~~~G 151 (195)
+.....-+-+.+
T Consensus 81 v~~~L~~ll~~~ 92 (139)
T PF07728_consen 81 VLESLLSLLEER 92 (139)
T ss_dssp HHHTTHHHHSSS
T ss_pred HHHHHHHHHhhC
Confidence 776665555543
No 162
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=24.96 E-value=86 Score=30.66 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=28.7
Q ss_pred cCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEE
Q 029314 121 VQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILI 158 (195)
Q Consensus 121 ~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~ 158 (195)
..+|.+|||||| +.-+.+-+...|++.|++++.+.
T Consensus 663 ~l~g~~iLlvdd---n~vn~~Va~~~l~~~g~~~~~~~ 697 (786)
T KOG0519|consen 663 LLTGPKILLVDD---NPVNRKVATGMLKKLGAEVTEVN 697 (786)
T ss_pred cccCCceEEEec---ccchHHHHHHHHHHhCCeeEeec
Confidence 468999999999 45667778899999999886654
No 163
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=24.86 E-value=1.6e+02 Score=20.07 Aligned_cols=31 Identities=10% Similarity=0.037 Sum_probs=23.9
Q ss_pred CCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEE
Q 029314 123 AGERALIVDDLVATGGTLSAAIRLLGSFQNHIFI 156 (195)
Q Consensus 123 ~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~ 156 (195)
+++.|+|+++ +|.....++..|.+.|-..+.
T Consensus 57 ~~~~vv~~c~---~g~rs~~~~~~l~~~G~~~v~ 87 (101)
T cd01528 57 PDKDIVVLCH---HGGRSMQVAQWLLRQGFENVY 87 (101)
T ss_pred CCCeEEEEeC---CCchHHHHHHHHHHcCCccEE
Confidence 4778888865 687888888889889887543
No 164
>COG2006 Uncharacterized conserved protein [Function unknown]
Probab=24.64 E-value=2.5e+02 Score=24.06 Aligned_cols=63 Identities=11% Similarity=0.092 Sum_probs=42.3
Q ss_pred CCCCEEEEEeee----------ccchHHHHHHHHHHhhcCCcEEEEEEEEecCccC------chhHHHHhhhhcCceeeE
Q 029314 122 QAGERALIVDDL----------VATGGTLSAAIRLLGSFQNHIFILICIQMLNACF------SSYILLFSYATNGFTQFT 185 (195)
Q Consensus 122 ~~Gk~VLLVDDV----------~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~------~~~~~~~~~~~~~~~~~~ 185 (195)
.+|++|||==.+ .|-=.++.++++.++++|++++- .++++.. ...-.+.+.+..+++.++
T Consensus 35 ~~G~~VlLKPN~lta~ppe~~~tThPevv~Av~~~v~e~g~ep~v----gd~pg~~st~~vlk~~Gi~dla~~~~~~iv~ 110 (293)
T COG2006 35 SPGDRVLLKPNLLTADPPEAPCTTHPEVVAAVAEVVKEAGGEPVV----GDSPGFGSTSGVLKTTGILDLAEALGLEIVN 110 (293)
T ss_pred CCCCEEEecCccccCCCCCCCCccCHHHHHHHHHHHHHhCCcceE----ecCCCCccHHHHHHHhCHHHHHHHcCCceee
Confidence 456666664433 34456899999999999999854 4466532 222336677888888888
Q ss_pred Eee
Q 029314 186 ITS 188 (195)
Q Consensus 186 ~~~ 188 (195)
..+
T Consensus 111 F~~ 113 (293)
T COG2006 111 FDT 113 (293)
T ss_pred ecc
Confidence 774
No 165
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=24.30 E-value=1.6e+02 Score=25.02 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=29.2
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecC
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLN 164 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~ 164 (195)
.+|++++|+ -.|++.++++-.|.+.|++.+. ++++.
T Consensus 124 ~~~~~vlil----GAGGAarAv~~aL~~~g~~~i~---V~NRt 159 (283)
T COG0169 124 VTGKRVLIL----GAGGAARAVAFALAEAGAKRIT---VVNRT 159 (283)
T ss_pred cCCCEEEEE----CCcHHHHHHHHHHHHcCCCEEE---EEeCC
Confidence 368999974 8999999999999999997654 44554
No 166
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=24.25 E-value=2.6e+02 Score=23.47 Aligned_cols=43 Identities=7% Similarity=0.022 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCCccEEEEeCCcchHh-HHHHHHHhCCCEEEE
Q 029314 48 DTIDLFVERYKDKNISVVAGIEARGFIF-GPPIALAIGAKFVPM 90 (195)
Q Consensus 48 ~l~~~la~~~~~~~~D~Iv~v~~~G~~l-A~~la~~l~~p~~~~ 90 (195)
.+...+.+.+.+.+||+|++...+...+ +...|..+++|++..
T Consensus 75 ~~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~ 118 (363)
T cd03786 75 GLLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPVAHV 118 (363)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCEEEE
Confidence 3444555556666899999986554445 455667789998754
No 167
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=23.96 E-value=1.3e+02 Score=26.45 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEEeCCcchH--hHHHHHHHhCCCEEEE
Q 029314 44 KAFRDTIDLFVERYKDKNISVVAGIEARGFI--FGPPIALAIGAKFVPM 90 (195)
Q Consensus 44 ~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~--lA~~la~~l~~p~~~~ 90 (195)
..+....+.+.+... .+++.|++++-+|.+ .+-..|..+|+|++..
T Consensus 75 ~e~~~a~~~le~~~g-~~~~av~~~EiGG~N~~~pl~~Aa~~GlPvvDa 122 (353)
T PF06032_consen 75 DEALRAVEALEKYLG-RKIDAVIPIEIGGSNGLNPLLAAAQLGLPVVDA 122 (353)
T ss_dssp HHHHHHHHHHHHHTT---EEEEE-SSSSCCHHHHHHHHHHHHT-EEESB
T ss_pred hHHHHHHHHHHHhhC-CCccEEeehhcCccchhHHHHHHHHhCCCEEcC
Confidence 344455555555444 469999999999984 3444577899999864
No 168
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=23.93 E-value=3.5e+02 Score=24.22 Aligned_cols=57 Identities=11% Similarity=0.085 Sum_probs=35.2
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEEEecCccCch-hHHHHhhhhcCceee
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICIQMLNACFSS-YILLFSYATNGFTQF 184 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~-~~~~~~~~~~~~~~~ 184 (195)
..|++|+|| -.|.|...++..+...|++ |.++..-+. ...+. ......+++.|+...
T Consensus 270 ~~gk~VvVI----GgG~~a~d~A~~l~~~G~~-Vtlv~~~~~-~~~~~~~~~~~~l~~~GV~~~ 327 (449)
T TIGR01316 270 YAGKSVVVI----GGGNTAVDSARTALRLGAE-VHCLYRRTR-EDMTARVEEIAHAEEEGVKFH 327 (449)
T ss_pred cCCCeEEEE----CCCHHHHHHHHHHHHcCCE-EEEEeecCc-ccCCCCHHHHHHHHhCCCEEE
Confidence 367888876 5788888999999999987 443322111 12222 222345677776554
No 169
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=23.69 E-value=2.2e+02 Score=23.70 Aligned_cols=38 Identities=13% Similarity=-0.095 Sum_probs=25.4
Q ss_pred HHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEE
Q 029314 52 LFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVP 89 (195)
Q Consensus 52 ~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~ 89 (195)
.+.+.+++.++|+|++.......++..++..+++|++.
T Consensus 81 ~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~ 118 (348)
T TIGR01133 81 QARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFH 118 (348)
T ss_pred HHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEE
Confidence 44455666789999997543334455567778889864
No 170
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=23.63 E-value=1.7e+02 Score=26.33 Aligned_cols=56 Identities=16% Similarity=0.087 Sum_probs=42.4
Q ss_pred EEechhhhcCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchHhH-H---HHHHHhCCCEEEE
Q 029314 33 FQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFG-P---PIALAIGAKFVPM 90 (195)
Q Consensus 33 ~~d~~~i~~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA-~---~la~~l~~p~~~~ 90 (195)
-+|+..++-+++..+.+++.|..... +.|.|+.+.-=|..++ . .+...+|.++..+
T Consensus 190 ~~~iAr~ld~~~~~~~l~~~l~~~~~--~~~~V~~PavIGle~a~~v~~~L~~~LG~~V~~v 249 (422)
T PRK05329 190 AVNIARLLDDPENREALADALKPLAG--DAEAVLLPAVLGLDDDAAVLAELEEALGCPVFEL 249 (422)
T ss_pred HHHHHHHhCChhHHHHHHHHHHHhcC--CCCEEEECceecCCChHHHHHHHHHHHCCCEEEe
Confidence 35777888899888888888877554 4578888888888776 4 3446799998765
No 171
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=23.40 E-value=2.5e+02 Score=23.20 Aligned_cols=40 Identities=10% Similarity=0.046 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHhCCCEEEE
Q 029314 48 DTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPM 90 (195)
Q Consensus 48 ~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l~~p~~~~ 90 (195)
...+.+.+.+...++|+||+= ..+++...|+..++|++.+
T Consensus 81 ~~~~~~~~~l~~~~pDlVIsD---~~~~~~~aa~~~giP~i~i 120 (318)
T PF13528_consen 81 RRIRREIRWLREFRPDLVISD---FYPLAALAARRAGIPVIVI 120 (318)
T ss_pred HHHHHHHHHHHhcCCCEEEEc---ChHHHHHHHHhcCCCEEEE
Confidence 334444555666789999986 3466778889999998754
No 172
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=23.38 E-value=2.8e+02 Score=19.72 Aligned_cols=62 Identities=15% Similarity=0.034 Sum_probs=43.9
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhc---CCcEEEEEEEEecCccCchhHHHHhhhhcCceeeEE
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSF---QNHIFILICIQMLNACFSSYILLFSYATNGFTQFTI 186 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~---Ga~~V~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (195)
..||.|-+|.-+-..+.-+...++.|++. |+.+..- .+...+.. .......|.+.||+.=+|
T Consensus 34 ~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsvk~~--~I~iQGD~-r~~v~~~L~~~G~~~~~i 98 (99)
T PRK00939 34 RYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTVKDG--RIELQGDH-RERVKELLIKMGFSEENI 98 (99)
T ss_pred CCCceEEEEeCCCCcchhHHHHHHHHHHHhCCCceEECC--EEEEeCcH-HHHHHHHHHHcCCChhhc
Confidence 47899999999998999999999999964 5554322 13334332 245667788889887665
No 173
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=23.27 E-value=92 Score=25.62 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=30.3
Q ss_pred cccCCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEEEE
Q 029314 119 GAVQAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILICI 160 (195)
Q Consensus 119 ~~~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~~l 160 (195)
+....|++++++||+..--+-=...-++.+.+|+. .+.+.+
T Consensus 88 gdynsgrhiilcdD~FY~kSMR~k~~ki~kd~Gci-FG~Ifl 128 (291)
T KOG4622|consen 88 GDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCI-FGIIFL 128 (291)
T ss_pred CCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCe-eeeeeh
Confidence 45568999999999998766666677777888864 344444
No 174
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=22.88 E-value=2.9e+02 Score=23.52 Aligned_cols=42 Identities=10% Similarity=0.027 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCccEEEEeCCcchHh-HHHHHHHhCCCEEEE
Q 029314 49 TIDLFVERYKDKNISVVAGIEARGFIF-GPPIALAIGAKFVPM 90 (195)
Q Consensus 49 l~~~la~~~~~~~~D~Iv~v~~~G~~l-A~~la~~l~~p~~~~ 90 (195)
....+.+.+.+.+||+|+..-.+.-.+ +...|..+++|++.+
T Consensus 74 ~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 74 MLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 334556666677899999986555445 455677889998754
No 175
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=22.52 E-value=24 Score=21.21 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=16.2
Q ss_pred eeccchHHHHHHHHHHhhc
Q 029314 132 DLVATGGTLSAAIRLLGSF 150 (195)
Q Consensus 132 DV~tTG~Tl~~a~~~L~~~ 150 (195)
.+.|.|.|+.++.+.++++
T Consensus 23 g~~t~G~t~eea~~~~~ea 41 (48)
T PF03681_consen 23 GCFTQGDTLEEALENAKEA 41 (48)
T ss_dssp TCEEEESSHHHHHHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHHH
Confidence 5679999999999988864
No 176
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=22.25 E-value=2e+02 Score=23.99 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=25.5
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEE
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFI 156 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~ 156 (195)
..+++|+|+ -+|++-++++..|.+.|+..+.
T Consensus 121 ~~~k~vlVl----GaGg~a~ai~~aL~~~g~~~V~ 151 (278)
T PRK00258 121 LKGKRILIL----GAGGAARAVILPLLDLGVAEIT 151 (278)
T ss_pred CCCCEEEEE----cCcHHHHHHHHHHHHcCCCEEE
Confidence 478899876 6799999999999999965543
No 177
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=22.14 E-value=2.9e+02 Score=24.19 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCCccEEEEeCCcchH--hHHHHHHHh--CCCEEE
Q 029314 49 TIDLFVERYKDKNISVVAGIEARGFI--FGPPIALAI--GAKFVP 89 (195)
Q Consensus 49 l~~~la~~~~~~~~D~Iv~v~~~G~~--lA~~la~~l--~~p~~~ 89 (195)
+.+.+.+.. .+||+++.++.-||+ +|..+ +.. |+|+++
T Consensus 66 ~~~~~~~~~--~~pd~~i~iD~p~Fnl~lak~~-k~~~~~i~viy 107 (347)
T PRK14089 66 AIKEMVELA--KQADKVLLMDSSSFNIPLAKKI-KKAYPKKEIIY 107 (347)
T ss_pred HHHHHHHHh--cCCCEEEEeCCCCCCHHHHHHH-HhcCCCCCEEE
Confidence 333444443 589999999999995 45544 455 788764
No 178
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=22.11 E-value=95 Score=25.65 Aligned_cols=28 Identities=36% Similarity=0.635 Sum_probs=23.7
Q ss_pred cCCCCEEEEEeeeccchHHHHHHHHHHhhcCC
Q 029314 121 VQAGERALIVDDLVATGGTLSAAIRLLGSFQN 152 (195)
Q Consensus 121 ~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga 152 (195)
+..||+|||+ +-|+|+++.++.|....-
T Consensus 171 l~~Gk~VlI~----AHGNSlRaLiK~L~~iSd 198 (230)
T COG0588 171 LKSGKNVLIV----AHGNSLRALIKYLEGISD 198 (230)
T ss_pred HhCCCeEEEE----ecchhHHHHHHHHhCCCH
Confidence 4699999987 569999999999997643
No 179
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=22.10 E-value=3.4e+02 Score=23.62 Aligned_cols=67 Identities=16% Similarity=0.105 Sum_probs=38.4
Q ss_pred CCCCEEEEEeeeccch-HHHHHHHHHHhhcCCcEEEEEEEEecCccCch--hHHHHhhhhcCceeeEEee
Q 029314 122 QAGERALIVDDLVATG-GTLSAAIRLLGSFQNHIFILICIQMLNACFSS--YILLFSYATNGFTQFTITS 188 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG-~Tl~~a~~~L~~~Ga~~V~~~~lv~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 188 (195)
.+|++|+|.==-..-| .......+.|++.|+.+..+.+.-......+. -.....++...+..+.+||
T Consensus 140 ~~g~~vli~~~~~~~~~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~l~~~~~d~v~FtS 209 (381)
T PRK07239 140 VAGKRIAVQLHGATDEWEPLPEFLEALRAAGAEVVPVPVYRWVPPPDPGPLDRLVDAIASRGLDAVTFTS 209 (381)
T ss_pred CCCCEEEEEcCCCccccCchHHHHHHHHHCCCEEEEeCcEEEcCCCChhHHHHHHHHHHcCCccEEEEcC
Confidence 4789999861001111 22345788999999998877666322211111 1334555666677777776
No 180
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=21.90 E-value=2.6e+02 Score=24.70 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=31.9
Q ss_pred hhcCHHHHHHHHHHHHHHhcCCCccEEEEeC---Ccch-----HhHHHHHHHhCCCEEEE
Q 029314 39 LLLDTKAFRDTIDLFVERYKDKNISVVAGIE---ARGF-----IFGPPIALAIGAKFVPM 90 (195)
Q Consensus 39 i~~~p~~~~~l~~~la~~~~~~~~D~Iv~v~---~~G~-----~lA~~la~~l~~p~~~~ 90 (195)
+..|++. ..+.+.+.+++.++|++++=| .+.| .++..+.+.+++|.+..
T Consensus 61 f~en~ee---a~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 61 FNENKEE---ALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred hhhCHHH---HHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 3345543 445555555666889877755 3444 57777888999998754
No 181
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=21.71 E-value=1.5e+02 Score=22.18 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhc--CCCccEEEEeCCcch----HhHHHHHHHhCCCEEEEe
Q 029314 46 FRDTIDLFVERYK--DKNISVVAGIEARGF----IFGPPIALAIGAKFVPMR 91 (195)
Q Consensus 46 ~~~l~~~la~~~~--~~~~D~Iv~v~~~G~----~lA~~la~~l~~p~~~~r 91 (195)
+..+.+++.+.+. ..+..-++--+.||| +++..++..++.|+.++.
T Consensus 73 l~~Lv~~~~~~v~~~~~~~~~v~~n~TGGfK~~~~~~~~~g~~~~~~v~Yi~ 124 (136)
T PF09651_consen 73 LRNLVRWVAEEVKNYKGRGYEVIFNATGGFKAEIAYLTLLGMLYGDPVYYIF 124 (136)
T ss_dssp HHHHHHHTHHHHHHHHHTT-EEEEE-SSS-HHHHHHHHHHHHHT--EEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEeCCChHHHHHHHHHHHHHcCCCEEEEE
Confidence 4445555555443 122335666788999 678888889999988764
No 182
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=21.67 E-value=86 Score=24.31 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=15.7
Q ss_pred CcchHhHHHHHHHhCCCEEE
Q 029314 70 ARGFIFGPPIALAIGAKFVP 89 (195)
Q Consensus 70 ~~G~~lA~~la~~l~~p~~~ 89 (195)
.+|-.+|..||+.||.++..
T Consensus 10 sgg~~Ia~~LA~~Lg~~~~d 29 (179)
T PF13189_consen 10 SGGREIAERLAEKLGYPYYD 29 (179)
T ss_dssp SSHHHHHHHHHHHCT--EE-
T ss_pred CChHHHHHHHHHHcCCccCC
Confidence 68889999999999999864
No 183
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=21.64 E-value=1.6e+02 Score=19.95 Aligned_cols=31 Identities=16% Similarity=0.035 Sum_probs=24.2
Q ss_pred CCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEE
Q 029314 123 AGERALIVDDLVATGGTLSAAIRLLGSFQNHIFI 156 (195)
Q Consensus 123 ~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~ 156 (195)
+++.|+++++ +|.+...++..|+..|-+.+.
T Consensus 65 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~ 95 (106)
T cd01519 65 KDKELIFYCK---AGVRSKAAAELARSLGYENVG 95 (106)
T ss_pred CCCeEEEECC---CcHHHHHHHHHHHHcCCccce
Confidence 5778888854 688888888999999977543
No 184
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=21.45 E-value=2.8e+02 Score=23.01 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=25.8
Q ss_pred echhhhcCHHHHHHHHHHHHHHhcCCCccEEEEeCCcchHhHHHHHHHh-C-CCEEEE
Q 029314 35 DITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAI-G-AKFVPM 90 (195)
Q Consensus 35 d~~~i~~~p~~~~~l~~~la~~~~~~~~D~Iv~v~~~G~~lA~~la~~l-~-~p~~~~ 90 (195)
+..+.-.|+..+..+. +++...++|+|+++.... +..+...+ + +|++++
T Consensus 37 ~~~~a~~d~~~~~~~~----~~l~~~~~DlIi~~gt~a---a~~~~~~~~~~iPVVf~ 87 (294)
T PF04392_consen 37 EYKNAEGDPEKLRQIA----RKLKAQKPDLIIAIGTPA---AQALAKHLKDDIPVVFC 87 (294)
T ss_dssp EEEE-TT-HHHHHHHH----HHHCCTS-SEEEEESHHH---HHHHHHH-SS-S-EEEE
T ss_pred EEecCCCCHHHHHHHH----HHHhcCCCCEEEEeCcHH---HHHHHHhcCCCcEEEEE
Confidence 3444455666555444 445667899999986433 33444443 4 798765
No 185
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=21.17 E-value=1.9e+02 Score=23.99 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=25.7
Q ss_pred cCCCccEEEEeCCcc--hHhHHHHHHHhCCCEEEEecC
Q 029314 58 KDKNISVVAGIEARG--FIFGPPIALAIGAKFVPMRKP 93 (195)
Q Consensus 58 ~~~~~D~Iv~v~~~G--~~lA~~la~~l~~p~~~~rk~ 93 (195)
+++++|++|+=++|| +.-=-..|+.+|+|++++++.
T Consensus 187 ~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP 224 (248)
T PRK08057 187 RQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIARP 224 (248)
T ss_pred HHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCC
Confidence 345788999988887 433335688889998887653
No 186
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=20.95 E-value=1.5e+02 Score=19.99 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=21.8
Q ss_pred CCCEEEEEeeeccchHH--HHHHHHHHhhcCCcEEE
Q 029314 123 AGERALIVDDLVATGGT--LSAAIRLLGSFQNHIFI 156 (195)
Q Consensus 123 ~Gk~VLLVDDV~tTG~T--l~~a~~~L~~~Ga~~V~ 156 (195)
+.+.|+|+.+ +|.. ...+++.|++.|-+.+.
T Consensus 49 ~~~~ivl~c~---~G~~~~s~~aa~~L~~~G~~~v~ 81 (92)
T cd01532 49 RDTPIVVYGE---GGGEDLAPRAARRLSELGYTDVA 81 (92)
T ss_pred CCCeEEEEeC---CCCchHHHHHHHHHHHcCccCEE
Confidence 3667888865 5533 56778888999887664
No 187
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=20.70 E-value=2.5e+02 Score=21.38 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=22.0
Q ss_pred cCCCCEEEEEeeeccchHHHHHHHHHHhhcCC
Q 029314 121 VQAGERALIVDDLVATGGTLSAAIRLLGSFQN 152 (195)
Q Consensus 121 ~~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga 152 (195)
..+|++|+|| -+|.|...++..|.+.|.
T Consensus 164 ~~~~k~V~VV----G~G~SA~d~a~~l~~~g~ 191 (203)
T PF13738_consen 164 DFKGKRVVVV----GGGNSAVDIAYALAKAGK 191 (203)
T ss_dssp GCTTSEEEEE------SHHHHHHHHHHTTTCS
T ss_pred hcCCCcEEEE----cChHHHHHHHHHHHhhCC
Confidence 3589999964 899999999999999983
No 188
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=20.54 E-value=1.9e+02 Score=24.39 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=27.0
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEEE
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFILI 158 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~~ 158 (195)
.+|++++| +-+|++.++++-.|.+.|++.+.++
T Consensus 125 ~~~k~vli----lGaGGaarAi~~aL~~~g~~~i~i~ 157 (283)
T PRK14027 125 AKLDSVVQ----VGAGGVGNAVAYALVTHGVQKLQVA 157 (283)
T ss_pred cCCCeEEE----ECCcHHHHHHHHHHHHCCCCEEEEE
Confidence 46888875 5899999999999999999765443
No 189
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=20.40 E-value=1.9e+02 Score=23.66 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=44.3
Q ss_pred CCCC-EEEEEee--eccchHHHHHHHHHHhhcCCcEEEEEE-EEecCccC-chhHHHHhhhhcCceeeEEee
Q 029314 122 QAGE-RALIVDD--LVATGGTLSAAIRLLGSFQNHIFILIC-IQMLNACF-SSYILLFSYATNGFTQFTITS 188 (195)
Q Consensus 122 ~~Gk-~VLLVDD--V~tTG~Tl~~a~~~L~~~Ga~~V~~~~-lv~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 188 (195)
.+|. ..|...+ ++.--+--++++++.+-+|...++++| +++..+.. +.-.+.++-++++++.++|..
T Consensus 133 ~PGHv~pL~a~~ggvl~R~GhtEaavdLa~lAgl~P~avi~ei~~~~G~~~~~~~~~~fA~~~~l~~v~i~d 204 (217)
T PRK03353 133 RPGHVFPLRAQPGGVLTRRGHTEATIDLMTLAGLKPAGVLCELTNDDGTMARAPECIAFAKQHNMPVLTIED 204 (217)
T ss_pred CCCCccceeeccCCcccCCCchHHHHHHHHHcCCCceEEEEEeecCCCCcccHHHHHHHHHHcCCcEEEHHH
Confidence 4665 4555554 333333347889999999998877777 44443432 335667888999999887754
No 190
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=20.39 E-value=2.3e+02 Score=24.01 Aligned_cols=32 Identities=16% Similarity=0.079 Sum_probs=25.7
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEEE
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHIFIL 157 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~~ 157 (195)
.+|+++|| +-+|++.++++-.|.+.|++.+.+
T Consensus 122 ~~~k~vlv----lGaGGaarAi~~~l~~~g~~~i~i 153 (288)
T PRK12749 122 IKGKTMVL----LGAGGASTAIGAQGAIEGLKEIKL 153 (288)
T ss_pred cCCCEEEE----ECCcHHHHHHHHHHHHCCCCEEEE
Confidence 47888886 478999999999899999876443
No 191
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=20.39 E-value=2.2e+02 Score=22.78 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=22.2
Q ss_pred CCCCEEEEEeeeccchHHHHHHHHHHhhcCCcE
Q 029314 122 QAGERALIVDDLVATGGTLSAAIRLLGSFQNHI 154 (195)
Q Consensus 122 ~~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~ 154 (195)
++|++|||| -.|.....-++.|.++||.+
T Consensus 7 l~gk~vlVv----GgG~va~rk~~~Ll~~ga~V 35 (205)
T TIGR01470 7 LEGRAVLVV----GGGDVALRKARLLLKAGAQL 35 (205)
T ss_pred cCCCeEEEE----CcCHHHHHHHHHHHHCCCEE
Confidence 478888875 66777777788888888865
No 192
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=20.27 E-value=1.9e+02 Score=19.38 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=21.0
Q ss_pred CCCEEEEEeeeccchHHHHHHHHHHhhcCCc
Q 029314 123 AGERALIVDDLVATGGTLSAAIRLLGSFQNH 153 (195)
Q Consensus 123 ~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~ 153 (195)
++++|++.. .+|.....++..|+..|-+
T Consensus 55 ~~~~iv~~c---~~G~rs~~aa~~L~~~G~~ 82 (95)
T cd01534 55 RGARIVLAD---DDGVRADMTASWLAQMGWE 82 (95)
T ss_pred CCCeEEEEC---CCCChHHHHHHHHHHcCCE
Confidence 466788875 4676667778888888886
No 193
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=20.25 E-value=1.9e+02 Score=19.62 Aligned_cols=31 Identities=13% Similarity=0.014 Sum_probs=22.3
Q ss_pred CCCEEEEEeeeccchHHHHHHHHHHhhcCCcEEE
Q 029314 123 AGERALIVDDLVATGGTLSAAIRLLGSFQNHIFI 156 (195)
Q Consensus 123 ~Gk~VLLVDDV~tTG~Tl~~a~~~L~~~Ga~~V~ 156 (195)
.++.|++++ .+|.....++..|+..|...|.
T Consensus 64 ~~~~vv~~c---~~g~~s~~~a~~L~~~G~~~v~ 94 (105)
T cd01525 64 KGKIIVIVS---HSHKHAALFAAFLVKCGVPRVC 94 (105)
T ss_pred cCCeEEEEe---CCCccHHHHHHHHHHcCCCCEE
Confidence 366788875 4666677778888989887554
No 194
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=20.03 E-value=1.4e+02 Score=24.86 Aligned_cols=41 Identities=17% Similarity=0.402 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCccEEEEeCCcch-HhHHHHHHHhCCCEEEE
Q 029314 50 IDLFVERYKDKNISVVAGIEARGF-IFGPPIALAIGAKFVPM 90 (195)
Q Consensus 50 ~~~la~~~~~~~~D~Iv~v~~~G~-~lA~~la~~l~~p~~~~ 90 (195)
...+.+.++..+.|+|+++-.|-+ -++..+|..+++||+.+
T Consensus 64 ~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~~~~p~isV 105 (250)
T PF13685_consen 64 VEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFELGIPFISV 105 (250)
T ss_dssp HHHHHTTS--TT--EEEEEESHHHHHHHHHHHHHHT--EEEE
T ss_pred HHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHhcCCCEEEe
Done!