BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029315
(195 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LES0|CSTR5_ARATH CMP-sialic acid transporter 5 OS=Arabidopsis thaliana GN=At5g65000
PE=2 SV=1
Length = 325
Score = 305 bits (782), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 151/192 (78%), Positives = 172/192 (89%)
Query: 3 RQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASA 62
RQ+QS+ QI A+ LLI+AAV LS+GEGS+K SS + D LFYGI+PVL ASVLSGLAS+
Sbjct: 132 RQKQSILQIGALCLLIMAAVLLSVGEGSNKDSSGINADQKLFYGIIPVLAASVLSGLASS 191
Query: 63 LCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIF 122
LCQWASQVKKHSSYLMT+EMSIVGSLCLL S KSPDGEAI+++GFF+GWT LTL+PVI
Sbjct: 192 LCQWASQVKKHSSYLMTVEMSIVGSLCLLVSTLKSPDGEAIKKYGFFHGWTALTLVPVIS 251
Query: 123 NSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI 182
N+LGGILVGLVTSHAGGVRKGFVIVSALLVTA+LQF FEGKPPS YCL+ALPLV+SSIS+
Sbjct: 252 NALGGILVGLVTSHAGGVRKGFVIVSALLVTALLQFAFEGKPPSSYCLVALPLVMSSISM 311
Query: 183 YQKYPYQVKKKE 194
YQKYPY KKK+
Sbjct: 312 YQKYPYIDKKKK 323
>sp|Q6AXR5|S35A3_RAT UDP-N-acetylglucosamine transporter OS=Rattus norvegicus GN=Slc35a3
PE=2 SV=1
Length = 326
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 97/189 (51%), Gaps = 4/189 (2%)
Query: 1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLA 60
M ++ M Q +++ +L+ F+ S + +S F G++ VL+A SG A
Sbjct: 131 MLGKKLGMYQWLSLVILMAGVAFVQWPSDSQELNSKDLSTGSQFVGLMAVLIACFSSGFA 190
Query: 61 SALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPV 120
+ + K S ++ I++ GS+ L + DGE + ++GFF G+ LT I V
Sbjct: 191 GVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGV-YVYDGELVSKNGFFQGYNQLTWIVV 249
Query: 121 IFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIF--EGKPPSLYCLIALPLVVS 178
+ +LGG+++ V +A + KGF +++++ ++ + + + P S++ L A+ LV++
Sbjct: 250 VLQALGGLVIAAVIKYADNILKGFATSLSIILSTIISYFWLQDFVPTSVFFLGAI-LVIA 308
Query: 179 SISIYQKYP 187
+ +Y P
Sbjct: 309 ATFLYGYDP 317
>sp|O77592|S35A3_CANFA UDP-N-acetylglucosamine transporter OS=Canis familiaris GN=SLC35A3
PE=2 SV=1
Length = 326
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 85/162 (52%), Gaps = 8/162 (4%)
Query: 28 EGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGS 87
E SK S+G F G++ VL A SG A + + K S ++ I++ GS
Sbjct: 162 ELDSKELSAGSQ----FVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGS 217
Query: 88 LCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIV 147
+ L + DGE + ++GFF G+ LT I VI +LGG+++ V +A + KGF
Sbjct: 218 IFGLMGVYIY-DGELVSKNGFFQGYNRLTWIVVILQALGGLVIAAVIKYADNILKGFATS 276
Query: 148 SALLVTAMLQFIF--EGKPPSLYCLIALPLVVSSISIYQKYP 187
+++++ ++ + + + P S++ L A+ LV+++ +Y P
Sbjct: 277 LSIILSTLISYFWLQDFVPTSVFFLGAI-LVITATFLYGYDP 317
>sp|Q6YC49|S35A3_BOVIN UDP-N-acetylglucosamine transporter OS=Bos taurus GN=SLC35A3 PE=2
SV=1
Length = 326
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 86/162 (53%), Gaps = 8/162 (4%)
Query: 28 EGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGS 87
E +SK S+G F G++ VL A SG A + + K S ++ I++ GS
Sbjct: 162 ELNSKELSAGSQ----FVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGS 217
Query: 88 LCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIV 147
+ L + DGE + ++GFF G+ LT I V+ +LGG+++ V +A + KGF
Sbjct: 218 IFGLMGV-YVYDGELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATS 276
Query: 148 SALLVTAMLQFIF--EGKPPSLYCLIALPLVVSSISIYQKYP 187
+++++ ++ + + + P S++ L A+ LV+++ +Y P
Sbjct: 277 LSIILSTLISYFWLQDFVPTSVFFLGAI-LVITATFLYGYDP 317
>sp|Q9Y2D2|S35A3_HUMAN UDP-N-acetylglucosamine transporter OS=Homo sapiens GN=SLC35A3 PE=2
SV=1
Length = 325
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 99/192 (51%), Gaps = 11/192 (5%)
Query: 1 MCRQRQSMQQIVAVFLLILAAVFL---SIGEGSSKRSSSGDPDHILFYGIVPVLVASVLS 57
M ++ + Q +++ +L+ F+ S + SK S+G F G++ VL A S
Sbjct: 131 MLSKKLGVYQWLSLVILMTGVAFVQWPSDSQLDSKELSAGSQ----FVGLMAVLTACFSS 186
Query: 58 GLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTL 117
G A + + K S ++ I++ GS+ L + DGE + ++GFF G+ LT
Sbjct: 187 GFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYIY-DGELVSKNGFFQGYNRLTW 245
Query: 118 IPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIF--EGKPPSLYCLIALPL 175
I V+ +LGG+++ V +A + KGF +++++ ++ + + + P S++ L A+ L
Sbjct: 246 IVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTSVFFLGAI-L 304
Query: 176 VVSSISIYQKYP 187
V+++ +Y P
Sbjct: 305 VITATFLYGYDP 316
>sp|Q8R1T4|S35A3_MOUSE UDP-N-acetylglucosamine transporter OS=Mus musculus GN=Slc35a3 PE=2
SV=1
Length = 326
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 85/162 (52%), Gaps = 8/162 (4%)
Query: 28 EGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGS 87
E +SK S+G F G++ VL A SG A + + K S ++ I++ GS
Sbjct: 162 ELNSKDLSTGSQ----FVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGS 217
Query: 88 LCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIV 147
+ L + DGE + ++GFF G+ LT I V +LGG+++ V +A + KGF
Sbjct: 218 IFGLMGV-YVYDGELVSKNGFFQGYNQLTWIVVALQALGGLVIAAVIKYADNILKGFATS 276
Query: 148 SALLVTAMLQFIF--EGKPPSLYCLIALPLVVSSISIYQKYP 187
+++++ ++ + + + P S++ L A+ LV+++ +Y P
Sbjct: 277 LSIILSTIISYFWLQDFVPTSVFFLGAI-LVIAATFLYGYDP 317
>sp|P78382|S35A1_HUMAN CMP-sialic acid transporter OS=Homo sapiens GN=SLC35A1 PE=2 SV=1
Length = 337
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 4/183 (2%)
Query: 1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLA 60
M + S Q V+VF+L A V L + + + + +L +G + + A + SG A
Sbjct: 135 MLNRTLSKLQWVSVFMLC-AGVTLVQWKPAQATKVVVEQNPLLGFGAIAI--AVLCSGFA 191
Query: 61 SALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPV 120
+ + S ++ I+M + G + LA + S DG I++ GFFYG+T +
Sbjct: 192 GVYFEKVLKSSDTSLWVRNIQMYLSGIIVTLAGVYLS-DGAEIKEKGFFYGYTYYVWFVI 250
Query: 121 IFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSI 180
S+GG+ +V + + KGF +A++++ + + G +L + LV SI
Sbjct: 251 FLASVGGLYTSVVVKYTDNIMKGFSAAAAIVLSTIASVMLFGLQITLTFALGTLLVCVSI 310
Query: 181 SIY 183
+Y
Sbjct: 311 YLY 313
>sp|A4IHW3|S35A4_XENTR Probable UDP-sugar transporter protein SLC35A4 OS=Xenopus
tropicalis GN=slc35a4 PE=2 SV=1
Length = 321
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 94/189 (49%), Gaps = 16/189 (8%)
Query: 3 RQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPD-HILFYGIVPVLVASVLSGLAS 61
RQR S+++ ++VFLL+ A VF S G S D + ++ G++ +L ++SGL++
Sbjct: 141 RQRLSVRRWLSVFLLLAAGVFYSYGGIQDLEKVSSDTNLYVTLPGLLLMLAYCLISGLSA 200
Query: 62 ALCQWASQVKK---HSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLI 118
+ + +K + L I+ +L + SK+ D FF G++ +
Sbjct: 201 VYTEMTLKTQKIPLNMQNLYLYSFGIIINLTAHLTSSKNSD--------FFDGFSVWVWV 252
Query: 119 PVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFI-FEGKPPSLYCLIALPLVV 177
++ +L G+++ LV + + + F+I ++L L FI F+ + +L+ L +V+
Sbjct: 253 IILSQALNGLIMSLVMKLSNNITRLFIISFSMLANGFLSFILFQLQLTALFF---LAVVL 309
Query: 178 SSISIYQKY 186
+++Y Y
Sbjct: 310 IGLAVYMYY 318
>sp|Q61420|S35A1_MOUSE CMP-sialic acid transporter OS=Mus musculus GN=Slc35a1 PE=1 SV=2
Length = 336
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 1/138 (0%)
Query: 46 GIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQ 105
G + +A + SG A + + S ++ I+M + G + LA S DG I++
Sbjct: 177 GFGAIAIAVLCSGFAGVYFEKVLKSSDTSLWVRNIQMYLSGIVVTLAGTYLS-DGAEIQE 235
Query: 106 HGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPP 165
GFFYG+T + S+GG+ +V + + KGF +A++++ + + G
Sbjct: 236 KGFFYGYTYYVWFVIFLASVGGLYTSVVVKYTDNIMKGFSAAAAIVLSTIASVLLFGLQI 295
Query: 166 SLYCLIALPLVVSSISIY 183
+L + LV SI +Y
Sbjct: 296 TLSFALGALLVCVSIYLY 313
>sp|P87041|GMS1_SCHPO UDP-galactose transporter OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=gms1 PE=2 SV=3
Length = 353
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 3/141 (2%)
Query: 46 GIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSL-CLLASISKSPDGEAIR 104
G VLVA ++SGLA + + S ++ +++S CL + K D I
Sbjct: 186 GFSAVLVACLISGLAGVYFEKVLKDTNPSLWVRNVQLSFFSLFPCLFTILMK--DYHNIA 243
Query: 105 QHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKP 164
++GFF+G+ + + ++ + GGI+V L + A + K F +++++++
Sbjct: 244 ENGFFFGYNSIVWLAILLQAGGGIIVALCVAFADNIMKNFSTSISIIISSLASVYLMDFK 303
Query: 165 PSLYCLIALPLVVSSISIYQK 185
SL LI + LV+++ +Y K
Sbjct: 304 ISLTFLIGVMLVIAATFLYTK 324
>sp|O08520|S35A1_CRIGR CMP-sialic acid transporter OS=Cricetulus griseus GN=SLC35A1 PE=2
SV=1
Length = 336
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
Query: 46 GIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQ 105
G + +A + SG A + + S ++ I+M + G + L S DG I++
Sbjct: 177 GFGAIAIAVLCSGFAGVYFEKVLKSSDTSLWVRNIQMYLSGIVVTLVGTYLS-DGAEIKE 235
Query: 106 HGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPP 165
GFFYG+T + S+GG+ +V + + KGF +A++++ + + G
Sbjct: 236 KGFFYGYTYYVWFVIFLASVGGLYTSVVVKYTDNIMKGFSAAAAIVLSTIASVMLFGLQI 295
Query: 166 SLYCLIALPLVVSSISIY 183
+L + LV SI +Y
Sbjct: 296 TLSFAMGALLVCISIYLY 313
>sp|Q9R0M8|S35A2_MOUSE UDP-galactose translocator OS=Mus musculus GN=Slc35a2 PE=2 SV=1
Length = 390
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 29 GSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSL 88
GS R +P G+ V+ + + SG A + + S +L +++ + G+
Sbjct: 189 GSGPRPLDQNPGA----GLAAVVASCLSSGFAGVYFEKILKGSSGSVWLRNLQLGLFGTA 244
Query: 89 CLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGF 144
L + + +G A+ GFF+G+TP V+ + GG+LV +V +A + KGF
Sbjct: 245 LGLVGLWWA-EGTAVASQGFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNILKGF 299
>sp|Q8WMS0|S35A2_CANFA UDP-galactose translocator OS=Canis familiaris GN=SLC35A2 PE=2 SV=2
Length = 397
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 31 SKRSSSGDP---DHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGS 87
++++ G P D G+ V+ + + SG A + + S +L +++ + G+
Sbjct: 184 AQQAGGGGPRPLDQNPGAGLAAVVASCLSSGFAGVYFEKILKGSSGSVWLRNLQLGLFGT 243
Query: 88 LCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGF 144
L + + +G A+ + GFF+G+TP V+ + GG+LV +V +A + KGF
Sbjct: 244 ALGLVGLWWA-EGTAVARRGFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNILKGF 299
>sp|Q58DA6|S35A2_BOVIN UDP-galactose translocator OS=Bos taurus GN=SLC35A2 PE=2 SV=1
Length = 393
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 31 SKRSSSGDP---DHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGS 87
++++ G P D G+ V+ + + SG A + + S +L +++ + G+
Sbjct: 184 AQQAGGGGPRPLDQNPGVGLAAVVASCLSSGFAGVYFEKILKGSSGSVWLRNLQLGLFGT 243
Query: 88 LCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGF 144
L + + +G A+ GFF+G+TP V+ + GG+LV +V +A + KGF
Sbjct: 244 ALGLVGLWWA-EGTAVTHRGFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNILKGF 299
>sp|P78381|S35A2_HUMAN UDP-galactose translocator OS=Homo sapiens GN=SLC35A2 PE=2 SV=1
Length = 396
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 31 SKRSSSGDP---DHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGS 87
++++ G P D G+ V+ + + SG A + + S +L +++ + G+
Sbjct: 184 AQQAGGGGPRPLDQNPGAGLAAVVASCLSSGFAGVYFEKILKGSSGSVWLRNLQLGLFGT 243
Query: 88 LCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGF 144
L + + +G A+ GFF+G+TP V+ + GG+LV +V +A + KGF
Sbjct: 244 ALGLVGLWWA-EGTAVATRGFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNILKGF 299
>sp|A0JMG9|S35A4_DANRE Probable UDP-sugar transporter protein SLC35A4 OS=Danio rerio
GN=slc35a4 PE=2 SV=1
Length = 314
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 7/146 (4%)
Query: 41 HILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDG 100
+I +G++ VLV +SGLA+ + + ++ + + + G + LAS G
Sbjct: 175 YITSWGLLLVLVYCFVSGLAAVYTERVLKSQRLPLSMQNLFLYTFGVVVNLAS--HLSGG 232
Query: 101 EAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIF 160
E Q GFF G++ + + V G+L+ +V H G+ + FVI SA+LV A+L +
Sbjct: 233 E---QKGFFEGYSAVVWVIVAGQVANGLLMSVVMKHGTGITRLFVISSAMLVNAVLSWGI 289
Query: 161 EGKPPSLYCLIALPLVVSSISIYQKY 186
G + Y L P+V+ ++Y Y
Sbjct: 290 LGVQLTGYFL--FPVVLIGWAVYLYY 313
>sp|F4JN00|CSTR4_ARATH CMP-sialic acid transporter 4 OS=Arabidopsis thaliana GN=At4g35335
PE=2 SV=1
Length = 352
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 99 DGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQ- 157
D +A+ GFF+G++ +TL+ ++ ++L GI V +V +A + K + A+L+TA++
Sbjct: 262 DFDAVANKGFFHGYSFITLLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSV 321
Query: 158 FIFE 161
F+F
Sbjct: 322 FLFN 325
>sp|Q02334|UGTP1_CAEEL UDP-galactose translocator 1 OS=Caenorhabditis elegans GN=ugtp-1
PE=3 SV=2
Length = 355
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 87/190 (45%), Gaps = 17/190 (8%)
Query: 4 QRQSMQQIVAVFLLILAAVFL-----SIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSG 58
++ S ++ +A+ LL+ F+ S E ++KR ++ ++I+ G+ VL V +G
Sbjct: 170 RKFSTRRWMAITLLMFGVAFVQMNNVSASEANTKRETA--ENYIV--GLSAVLATCVTAG 225
Query: 59 LASALCQWASQVKKHSS---YLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPL 115
A + +K S ++ ++M G + ASI+ D I GFF+G+T
Sbjct: 226 FAGVYFE--KMLKDGGSTPFWIRNMQMYSCGVIS--ASIACLTDFSRISDKGFFFGYTDK 281
Query: 116 TLIPVIFNSLGGILVGLVTSHAGGVRKGFV-IVSALLVTAMLQFIFEGKPPSLYCLIALP 174
VI +GG+ + LV + + K VS +LV + IF +Y ++
Sbjct: 282 VWAVVILLGVGGLYISLVMRYLDNLYKSMASAVSIILVVVLSMLIFPDIFIGMYFVLGTI 341
Query: 175 LVVSSISIYQ 184
VV ++ +Y
Sbjct: 342 CVVLAVLLYN 351
>sp|Q93890|SRF3_CAEEL UDP-galactose/UDP-N-acetylglucosamine transporter srf-3
OS=Caenorhabditis elegans GN=srf-3 PE=1 SV=5
Length = 368
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%)
Query: 99 DGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQF 158
D + + ++G YG+ + + V++ +GG+ V + +A + K F A++++ +
Sbjct: 258 DSKTVNEYGLLYGFDSIVWLTVLWYGVGGLSVAVCIKYADNIAKNFATSVAIILSTIGSI 317
Query: 159 IFEGKPPSLYCLIALPLVVSSISIYQKY 186
PS L+ LV+ SI +Y +
Sbjct: 318 FLFDFIPSFTFLLGASLVIFSIFLYSSH 345
>sp|P75547|LGT_MYCPN Prolipoprotein diacylglyceryl transferase OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=lgt PE=3 SV=1
Length = 389
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 114 PLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFE 161
PL LI FN++ + + V H G+R G + S L T +++ I E
Sbjct: 221 PLFLIESFFNTIFFVFIYFVMDHIKGIRSGTIGFSYFLATGIVRLILE 268
>sp|Q921R7|S35A5_MOUSE Probable UDP-sugar transporter protein SLC35A5 OS=Mus musculus
GN=Slc35a5 PE=1 SV=3
Length = 437
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 91 LASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVI-VSA 149
L + +S + + I+ GFFYG +++ + + G+ V + + + V+
Sbjct: 294 LTLVLQSSNRDQIQNCGFFYGHNAFSVVLIFVTAFQGLSVAFILKFLDNMFHVLMAQVTT 353
Query: 150 LLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQ 184
+++T + +F+ + PSL + P V+ SI IY
Sbjct: 354 VIITTVSVLVFDFR-PSLDFFLEAPSVLLSIFIYN 387
>sp|Q9BS91|S35A5_HUMAN Probable UDP-sugar transporter protein SLC35A5 OS=Homo sapiens
GN=SLC35A5 PE=1 SV=2
Length = 424
Score = 30.0 bits (66), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 96 KSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVI-VSALLVTA 154
+ + + I+ GFFYG + ++ + + G+ V + + + V+ +++T
Sbjct: 286 QRSNRDQIKNCGFFYGHSAFSVALIFVTAFQGLSVAFILKFLDNMFHVLMAQVTTVIITT 345
Query: 155 MLQFIFEGKPPSLYCLIALPLVVSSISIYQKYPYQV 190
+ +F+ + PSL + P V+ SI IY QV
Sbjct: 346 VSVLVFDFR-PSLEFFLEAPSVLLSIFIYNASKPQV 380
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,870,154
Number of Sequences: 539616
Number of extensions: 2580288
Number of successful extensions: 8585
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 8541
Number of HSP's gapped (non-prelim): 52
length of query: 195
length of database: 191,569,459
effective HSP length: 111
effective length of query: 84
effective length of database: 131,672,083
effective search space: 11060454972
effective search space used: 11060454972
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)