Query 029315
Match_columns 195
No_of_seqs 137 out of 770
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 10:56:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029315.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029315hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2234 Predicted UDP-galactos 100.0 3.8E-46 8.3E-51 309.3 17.7 189 1-190 139-327 (345)
2 PF04142 Nuc_sug_transp: Nucle 100.0 2.7E-40 5.9E-45 268.7 14.8 175 1-176 64-244 (244)
3 TIGR00803 nst UDP-galactose tr 99.9 2E-27 4.4E-32 190.6 13.1 177 2-183 46-222 (222)
4 PF08449 UAA: UAA transporter 99.8 3.3E-17 7.1E-22 137.3 15.5 188 1-190 111-302 (303)
5 KOG1583 UDP-N-acetylglucosamin 99.7 1.7E-16 3.6E-21 128.4 8.5 185 1-186 112-315 (330)
6 PF06027 DUF914: Eukaryotic pr 99.7 5.6E-15 1.2E-19 124.9 15.7 179 1-188 126-308 (334)
7 TIGR00817 tpt Tpt phosphate/ph 99.6 1.9E-14 4E-19 120.3 13.2 181 1-193 112-301 (302)
8 PLN00411 nodulin MtN21 family 99.6 5.1E-13 1.1E-17 114.4 18.5 181 2-186 132-329 (358)
9 PRK11453 O-acetylserine/cystei 99.5 6.2E-13 1.3E-17 111.2 18.0 175 1-185 107-287 (299)
10 PTZ00343 triose or hexose phos 99.5 1.4E-12 2.9E-17 111.6 16.3 175 1-186 161-349 (350)
11 KOG1580 UDP-galactose transpor 99.5 4.6E-13 9.9E-18 106.6 12.1 179 1-185 132-313 (337)
12 PRK11689 aromatic amino acid e 99.5 1.2E-12 2.6E-17 109.3 15.4 173 1-186 112-288 (295)
13 TIGR00950 2A78 Carboxylate/Ami 99.5 3.1E-12 6.7E-17 104.2 17.1 164 1-180 94-259 (260)
14 PRK11272 putative DMT superfam 99.5 2.8E-12 6.1E-17 106.9 16.0 168 2-189 117-289 (292)
15 PRK15430 putative chlorampheni 99.3 4.4E-11 9.6E-16 99.9 14.9 163 1-184 120-284 (296)
16 PRK10532 threonine and homoser 99.3 1.2E-10 2.5E-15 97.2 17.1 170 4-195 117-292 (293)
17 COG0697 RhaT Permeases of the 99.2 2.3E-09 5E-14 87.7 16.5 170 2-186 119-288 (292)
18 TIGR03340 phn_DUF6 phosphonate 99.1 2.4E-10 5.3E-15 94.7 9.6 166 1-182 110-280 (281)
19 KOG1581 UDP-galactose transpor 99.1 1E-09 2.2E-14 90.3 11.9 177 2-182 131-310 (327)
20 PF03151 TPT: Triose-phosphate 99.0 1.1E-08 2.4E-13 76.8 14.0 140 46-185 1-153 (153)
21 KOG1582 UDP-galactose transpor 98.8 3.9E-08 8.4E-13 80.1 10.8 173 3-185 155-332 (367)
22 KOG2765 Predicted membrane pro 98.6 1E-07 2.2E-12 80.7 7.9 177 3-187 208-392 (416)
23 COG2962 RarD Predicted permeas 98.6 1.4E-06 3.1E-11 71.6 13.5 162 1-187 119-285 (293)
24 KOG3912 Predicted integral mem 98.6 4.9E-07 1.1E-11 74.1 10.6 182 1-185 133-334 (372)
25 KOG1441 Glucose-6-phosphate/ph 98.6 4.2E-09 9.1E-14 88.4 -1.7 181 1-194 130-316 (316)
26 TIGR00776 RhaT RhaT L-rhamnose 98.5 4.7E-06 1E-10 69.6 13.5 165 2-182 108-285 (290)
27 TIGR00688 rarD rarD protein. T 98.5 5.3E-06 1.1E-10 67.6 13.4 139 1-160 117-255 (256)
28 PF00892 EamA: EamA-like trans 98.2 1.1E-05 2.3E-10 57.7 9.0 61 123-183 64-124 (126)
29 KOG1443 Predicted integral mem 98.2 1.9E-05 4.2E-10 65.5 10.9 173 4-191 134-321 (349)
30 COG2510 Predicted membrane pro 98.2 3.3E-05 7.2E-10 56.4 10.3 128 47-184 5-138 (140)
31 KOG1444 Nucleotide-sugar trans 98.2 3.5E-05 7.5E-10 64.3 11.3 172 1-187 124-302 (314)
32 KOG2766 Predicted membrane pro 97.9 7.8E-07 1.7E-11 72.1 -2.9 176 2-191 126-305 (336)
33 KOG4510 Permease of the drug/m 97.8 2.7E-05 5.8E-10 63.7 4.9 169 1-180 144-320 (346)
34 PRK02971 4-amino-4-deoxy-L-ara 97.7 0.0023 5E-08 47.2 13.8 119 45-188 2-125 (129)
35 PRK15430 putative chlorampheni 97.7 0.0018 3.9E-08 54.1 14.2 137 42-183 5-143 (296)
36 TIGR03340 phn_DUF6 phosphonate 97.7 0.0011 2.3E-08 54.9 12.3 127 47-184 3-134 (281)
37 KOG1442 GDP-fucose transporter 97.6 2.2E-05 4.7E-10 64.4 1.6 145 40-186 180-328 (347)
38 PF08449 UAA: UAA transporter 97.6 0.0034 7.4E-08 52.6 14.9 121 59-187 14-138 (303)
39 PF06800 Sugar_transport: Suga 97.5 0.0073 1.6E-07 49.9 15.0 162 2-180 94-266 (269)
40 TIGR00688 rarD rarD protein. T 97.5 0.0042 9.2E-08 50.5 13.6 134 45-182 2-139 (256)
41 PF13536 EmrE: Multidrug resis 97.4 0.0019 4.1E-08 46.2 9.1 59 125-184 47-105 (113)
42 PRK15051 4-amino-4-deoxy-L-ara 97.4 0.0013 2.9E-08 47.1 7.8 59 124-182 48-106 (111)
43 COG5070 VRG4 Nucleotide-sugar 97.3 0.0011 2.3E-08 53.2 7.2 175 1-186 115-297 (309)
44 PRK10452 multidrug efflux syst 97.3 0.0031 6.8E-08 45.9 9.1 70 118-187 35-105 (120)
45 KOG4314 Predicted carbohydrate 97.3 0.00067 1.5E-08 53.4 5.8 166 2-184 101-275 (290)
46 PF05653 Mg_trans_NIPA: Magnes 97.3 0.0029 6.4E-08 53.2 9.9 116 41-182 3-119 (300)
47 PRK09541 emrE multidrug efflux 97.1 0.006 1.3E-07 43.7 8.7 68 120-187 37-105 (110)
48 TIGR00817 tpt Tpt phosphate/ph 96.8 0.045 9.8E-07 45.6 13.1 124 53-184 11-136 (302)
49 PTZ00343 triose or hexose phos 96.7 0.077 1.7E-06 45.5 14.3 128 52-184 56-185 (350)
50 TIGR00776 RhaT RhaT L-rhamnose 96.7 0.062 1.3E-06 44.8 12.9 130 46-187 2-138 (290)
51 COG5006 rhtA Threonine/homoser 96.6 0.31 6.6E-06 40.0 16.0 164 3-187 116-284 (292)
52 TIGR00950 2A78 Carboxylate/Ami 96.6 0.046 1E-06 44.1 11.4 63 123-185 57-119 (260)
53 COG2076 EmrE Membrane transpor 96.3 0.03 6.6E-07 39.7 7.7 62 121-182 38-100 (106)
54 PF05653 Mg_trans_NIPA: Magnes 96.2 0.005 1.1E-07 51.8 3.5 61 128-188 228-295 (300)
55 PRK11272 putative DMT superfam 96.2 0.24 5.2E-06 41.1 13.5 129 46-184 9-140 (292)
56 PF10639 UPF0546: Uncharacteri 96.1 0.026 5.6E-07 40.6 6.4 66 117-182 45-111 (113)
57 PRK10650 multidrug efflux syst 96.1 0.062 1.3E-06 38.4 8.2 63 120-182 42-105 (109)
58 PRK11453 O-acetylserine/cystei 96.0 0.38 8.2E-06 40.0 14.3 122 48-184 7-131 (299)
59 PRK11689 aromatic amino acid e 95.9 0.41 8.9E-06 39.8 13.9 127 46-184 5-136 (295)
60 PRK11431 multidrug efflux syst 95.9 0.1 2.2E-06 37.1 8.5 64 120-183 36-100 (105)
61 COG0697 RhaT Permeases of the 95.8 0.83 1.8E-05 36.9 15.0 140 43-187 5-145 (292)
62 PLN00411 nodulin MtN21 family 95.5 0.51 1.1E-05 40.7 13.0 55 128-182 93-153 (358)
63 PF00893 Multi_Drug_Res: Small 95.4 0.066 1.4E-06 37.0 6.2 56 121-176 37-93 (93)
64 PF06027 DUF914: Eukaryotic pr 95.1 0.82 1.8E-05 39.1 12.9 59 126-184 92-150 (334)
65 PF04142 Nuc_sug_transp: Nucle 94.1 0.36 7.8E-06 39.4 8.3 67 121-187 25-91 (244)
66 PRK13499 rhamnose-proton sympo 93.9 0.96 2.1E-05 38.9 10.8 135 42-185 4-153 (345)
67 COG2962 RarD Predicted permeas 93.6 1.7 3.7E-05 36.3 11.3 128 45-180 7-139 (293)
68 KOG2922 Uncharacterized conser 93.6 0.053 1.1E-06 45.7 2.4 79 113-191 64-143 (335)
69 PF04657 DUF606: Protein of un 93.1 2.7 5.9E-05 31.1 13.3 131 47-182 3-138 (138)
70 PRK10452 multidrug efflux syst 92.3 0.22 4.7E-06 36.3 3.9 30 1-30 78-107 (120)
71 KOG4831 Unnamed protein [Funct 88.9 0.74 1.6E-05 32.7 3.9 66 117-182 56-122 (125)
72 TIGR00803 nst UDP-galactose tr 88.7 3 6.6E-05 33.0 7.9 73 2-74 26-109 (222)
73 PRK13499 rhamnose-proton sympo 88.6 15 0.00033 31.6 14.5 56 8-65 135-194 (345)
74 KOG1444 Nucleotide-sugar trans 87.4 17 0.00036 30.8 12.3 136 42-186 9-150 (314)
75 PF06379 RhaT: L-rhamnose-prot 83.4 9.8 0.00021 32.6 8.6 139 41-186 3-154 (344)
76 PF06800 Sugar_transport: Suga 82.2 17 0.00038 30.1 9.5 66 124-189 56-126 (269)
77 KOG4510 Permease of the drug/m 79.6 1.5 3.3E-05 36.4 2.4 49 136-187 123-171 (346)
78 KOG1581 UDP-galactose transpor 78.8 18 0.00039 30.6 8.4 71 117-187 87-157 (327)
79 PF04342 DUF486: Protein of un 77.7 5.4 0.00012 28.2 4.4 42 141-182 64-105 (108)
80 COG4665 FcbT2 TRAP-type mannit 68.0 25 0.00055 27.1 6.3 63 51-116 27-89 (182)
81 KOG3912 Predicted integral mem 60.8 75 0.0016 26.9 8.3 64 119-182 92-155 (372)
82 PF07857 DUF1632: CEO family ( 52.0 79 0.0017 26.0 7.1 19 167-185 116-134 (254)
83 KOG1441 Glucose-6-phosphate/ph 51.8 32 0.0007 29.2 4.9 66 120-185 90-155 (316)
84 COG3238 Uncharacterized protei 50.9 1.1E+02 0.0023 23.2 11.6 135 45-186 5-147 (150)
85 PF11023 DUF2614: Protein of u 49.8 71 0.0015 22.9 5.6 24 4-27 6-29 (114)
86 COG4711 Predicted membrane pro 49.5 1.2E+02 0.0025 24.3 7.3 20 4-23 119-138 (217)
87 COG3169 Uncharacterized protei 47.8 59 0.0013 22.9 4.8 41 142-182 72-112 (116)
88 PF05297 Herpes_LMP1: Herpesvi 46.7 6.5 0.00014 33.0 0.0 81 2-92 72-154 (381)
89 PF06379 RhaT: L-rhamnose-prot 45.7 1.4E+02 0.003 25.8 7.8 66 40-105 134-200 (344)
90 COG4975 GlcU Putative glucose 44.7 26 0.00057 28.9 3.2 68 126-193 72-144 (288)
91 KOG2765 Predicted membrane pro 38.0 61 0.0013 28.4 4.5 60 127-186 173-232 (416)
92 PF12270 Cyt_c_ox_IV: Cytochro 36.7 1.7E+02 0.0038 21.7 6.2 54 11-72 10-63 (137)
93 PF04304 DUF454: Protein of un 34.9 87 0.0019 19.9 4.0 39 146-184 32-70 (71)
94 PF02694 UPF0060: Uncharacteri 34.7 74 0.0016 22.6 3.8 46 138-183 54-101 (107)
95 PF09964 DUF2198: Uncharacteri 34.0 1.4E+02 0.003 19.7 6.0 15 4-18 18-32 (74)
96 PRK02935 hypothetical protein; 34.0 1.2E+02 0.0027 21.5 4.8 25 4-28 7-31 (110)
97 KOG1442 GDP-fucose transporter 33.8 11 0.00024 31.6 -0.5 55 131-185 120-174 (347)
98 PRK02237 hypothetical protein; 33.7 82 0.0018 22.4 3.9 43 140-182 58-102 (109)
99 PRK10532 threonine and homoser 33.5 2.7E+02 0.0058 22.8 13.6 125 42-182 9-134 (293)
100 smart00793 AgrB Accessory gene 33.2 1.3E+02 0.0029 23.1 5.5 55 136-193 72-126 (184)
101 cd08554 Cyt_b561 Eukaryotic cy 31.4 1.8E+02 0.0039 20.7 5.7 43 9-53 42-84 (131)
102 PRK10527 hypothetical protein; 30.5 1.5E+02 0.0033 21.6 5.0 32 161-192 91-122 (125)
103 COG4975 GlcU Putative glucose 29.0 4.9 0.00011 33.0 -3.3 42 11-55 121-162 (288)
104 smart00665 B561 Cytochrome b-5 27.5 1.9E+02 0.0041 20.6 5.2 17 9-25 40-56 (129)
105 KOG1443 Predicted integral mem 26.7 3.5E+02 0.0077 23.2 7.1 119 61-187 32-158 (349)
106 PRK11715 inner membrane protei 26.4 4.7E+02 0.01 23.4 8.7 46 45-90 357-402 (436)
107 KOG2234 Predicted UDP-galactos 26.2 1.5E+02 0.0033 25.5 5.0 56 129-184 108-163 (345)
108 COG4042 Predicted membrane pro 24.5 1.7E+02 0.0036 20.2 4.0 28 45-72 75-102 (104)
109 PRK00611 putative disulfide ox 22.4 3.3E+02 0.0071 20.1 5.8 38 50-87 13-51 (135)
110 PF02656 DUF202: Domain of unk 22.3 2.2E+02 0.0047 18.0 6.2 47 12-59 16-62 (73)
111 PF04550 Phage_holin_2: Phage 22.2 2.7E+02 0.0058 19.1 6.3 27 3-29 27-59 (89)
112 PF04133 Vps55: Vacuolar prote 22.0 3.1E+02 0.0068 19.8 9.8 79 44-143 9-91 (120)
113 PF11118 DUF2627: Protein of u 21.9 1.3E+02 0.0028 20.1 2.9 27 168-194 42-73 (77)
114 PF06123 CreD: Inner membrane 21.7 5.8E+02 0.013 22.8 8.4 46 45-90 351-396 (430)
115 PF06609 TRI12: Fungal trichot 21.5 6.7E+02 0.015 23.4 12.8 21 8-28 238-258 (599)
116 PF04647 AgrB: Accessory gene 20.8 1.7E+02 0.0037 22.2 4.0 23 136-158 72-94 (185)
117 PF12537 DUF3735: Protein of u 20.4 1.1E+02 0.0023 19.9 2.4 20 45-64 13-32 (72)
No 1
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-46 Score=309.26 Aligned_cols=189 Identities=31% Similarity=0.477 Sum_probs=174.1
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 029315 1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTI 80 (195)
Q Consensus 1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~ 80 (195)
+||||++++||.|++++++|+.++|.+..++.+...+.++.+...|+.+++.+|++||+||+|+||++|+.+.+.|+||+
T Consensus 139 ~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~Ni 218 (345)
T KOG2234|consen 139 ILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNI 218 (345)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 48999999999999999999999996655544333356678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHh
Q 029315 81 EMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIF 160 (195)
Q Consensus 81 ~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~l 160 (195)
|||++|++++++.+ ...|++++...|||+||+..+|.+++.|++||+++++++||+|||+|+|++++++++++++|+++
T Consensus 219 qL~~~g~~f~~l~~-~~~d~~~i~~~gff~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~L 297 (345)
T KOG2234|consen 219 QLYFFGILFNLLTI-LLQDGEAINEYGFFYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIAL 297 (345)
T ss_pred HHHHHHHHHHHHHH-hhccccccccCCccccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887776 45688888888999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhhHHHHHHHhhhhheeccCCCcc
Q 029315 161 EGKPPSLYCLIALPLVVSSISIYQKYPYQV 190 (195)
Q Consensus 161 fg~~~t~~~~~G~~lV~~s~~ly~~~~~~~ 190 (195)
||++||..+++|+.+|+.|+++|+.+|+++
T Consensus 298 f~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 298 FDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred ccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 999999999999999999999999888654
No 2
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=100.00 E-value=2.7e-40 Score=268.66 Aligned_cols=175 Identities=30% Similarity=0.507 Sum_probs=158.3
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCC------CCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 029315 1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSS------GDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHS 74 (195)
Q Consensus 1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~------~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~ 74 (195)
+||||++++||.|++++++|+++++.++..++++++ +..+.+...|+++++.++++||++|||.||++|+++.|
T Consensus 64 ~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s 143 (244)
T PF04142_consen 64 LLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVS 143 (244)
T ss_pred HHHcccchhhHHHHHHHHHHHheeecCCccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 479999999999999999999999987766532111 11345788999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHH
Q 029315 75 SYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTA 154 (195)
Q Consensus 75 ~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~ 154 (195)
+|.||+|||++|++++++.. ...|++++.++|||+||++++|.++..|++||+++++++||+||++|+|+++++++++.
T Consensus 144 ~~~~N~qL~~~gi~~~~~~~-~~~~~~~~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~ 222 (244)
T PF04142_consen 144 LWIQNMQLYLFGILFNLLAL-LLSDGSAISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTA 222 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcccccccccCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999988886654 56788888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCchhhHHHHHHH
Q 029315 155 MLQFIFEGKPPSLYCLIALPLV 176 (195)
Q Consensus 155 lls~~lfg~~~t~~~~~G~~lV 176 (195)
++|+++||.+|+..+++|+.+|
T Consensus 223 ~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 223 VLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred HHHHHHhCCCCchHHhhheecC
Confidence 9999999999999999998875
No 3
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.95 E-value=2e-27 Score=190.63 Aligned_cols=177 Identities=19% Similarity=0.221 Sum_probs=149.3
Q ss_pred CCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 029315 2 CRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIE 81 (195)
Q Consensus 2 l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~ 81 (195)
+++|++..||.++.++..|+...+.++..+ .....++...|..+++.++.+++++++|+|+.+|+++.+.|.+|++
T Consensus 46 l~~~ls~~q~~al~~l~~~~~~~~~~~~~~----~~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~ 121 (222)
T TIGR00803 46 LVASLGDDQWFSLKLLKLGVAIVQMVQSSA----KTLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQ 121 (222)
T ss_pred HHhHhhHHHHHHHHHHHHhHeeeecCCCCc----cccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHH
Confidence 356666666666666666666665543321 1122357789999999999999999999999999988889999999
Q ss_pred HHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhc
Q 029315 82 MSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFE 161 (195)
Q Consensus 82 l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lf 161 (195)
+++++.+.+... ....+++...+.++++||+..+|.+++.++.+|+++++++||+|+++|+++++++++++.++|+++|
T Consensus 122 l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f 200 (222)
T TIGR00803 122 LPLFGLFSTFSV-LLWSDGTLISNFGFFIGYPTAVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLF 200 (222)
T ss_pred HHHHHHHHHHHH-HhhcccchhhccCcccCCchHHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999997655433 3456667777789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHhhhhhee
Q 029315 162 GKPPSLYCLIALPLVVSSISIY 183 (195)
Q Consensus 162 g~~~t~~~~~G~~lV~~s~~ly 183 (195)
|++++..+++|+.+|+.|+++|
T Consensus 201 ~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 201 DAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred cCCccHHHHHHHHHHHeeeEeC
Confidence 9999999999999999999988
No 4
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.75 E-value=3.3e-17 Score=137.27 Aligned_cols=188 Identities=19% Similarity=0.249 Sum_probs=138.4
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 029315 1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTI 80 (195)
Q Consensus 1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~ 80 (195)
++|||++++||.+++++++|+++...++.+++++.+ ....+...|+.+++++.++.|+.++|+||++++++.+.+....
T Consensus 111 ~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~-~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mf 189 (303)
T PF08449_consen 111 ILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSN-SSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMF 189 (303)
T ss_pred hcCccccHHHHHHHHHHHhhHheeeecccccccccc-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 479999999999999999999999987765442221 1222223499999999999999999999999999877654444
Q ss_pred HHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHH----HHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHH
Q 029315 81 EMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLI----PVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAML 156 (195)
Q Consensus 81 ~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~----~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~ll 156 (195)
....++..+........+.++......|...+ +..+. ..+.+++|...+..++|..++...+..+++.-++|.++
T Consensus 190 y~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~-p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sill 268 (303)
T PF08449_consen 190 YTNLFSLPFLLILLFLLPTGEFRSAIRFISAH-PSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILL 268 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHH
Confidence 45667755544443331111111111122222 22332 34455666677788899999999999999999999999
Q ss_pred HHHhcCCCCchhhHHHHHHHhhhhheeccCCCcc
Q 029315 157 QFIFEGKPPSLYCLIALPLVVSSISIYQKYPYQV 190 (195)
Q Consensus 157 s~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~~~~ 190 (195)
|+++||++++..+++|..+|+.|+.+|....+++
T Consensus 269 S~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 269 SVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 9999999999999999999999999998865544
No 5
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.67 E-value=1.7e-16 Score=128.36 Aligned_cols=185 Identities=15% Similarity=0.180 Sum_probs=133.9
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCC--------CCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 029315 1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRS--------SSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKK 72 (195)
Q Consensus 1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~--------~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~ 72 (195)
++|||+|.+|+.+++++++|+++..+.+..+..+ +...+...+.+|+.++..+.+.|+..|.|+|..||+++
T Consensus 112 l~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyG 191 (330)
T KOG1583|consen 112 LLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYG 191 (330)
T ss_pred hccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999998755443211 11223346789999999999999999999999999997
Q ss_pred CchHHHHHHHHHHHHHHhhhhhh--ccCCchhhhh-cc---ccccc-chhhHHHHHHHHHhh-HHhhhhhhc---ccchh
Q 029315 73 HSSYLMTIEMSIVGSLCLLASIS--KSPDGEAIRQ-HG---FFYGW-TPLTLIPVIFNSLGG-ILVGLVTSH---AGGVR 141 (195)
Q Consensus 73 ~~~~~~n~~l~~~~~l~~~~~~~--~~~~~~~~~~-~~---ff~g~-~~~~~~~v~~~a~gg-~~v~~vlk~---~~~i~ 141 (195)
++ |.+++++.++-.+|..+.+. +..+|..... +. ...|. -|..|...+.|.+.+ .|+..+.-. .++..
T Consensus 192 Kh-~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLT 270 (330)
T KOG1583|consen 192 KH-WKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLT 270 (330)
T ss_pred CC-hHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceE
Confidence 55 88898876665578766531 0011111111 10 11122 356677777777754 555444332 55666
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccC
Q 029315 142 KGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKY 186 (195)
Q Consensus 142 k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~ 186 (195)
.+...++.-.+|.++|..+|++|+++..++|+.+|++|+.+|...
T Consensus 271 VTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~ 315 (330)
T KOG1583|consen 271 VTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANV 315 (330)
T ss_pred EEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 666667777899999999999999999999999999999999854
No 6
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.65 E-value=5.6e-15 Score=124.86 Aligned_cols=179 Identities=14% Similarity=0.167 Sum_probs=136.9
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 029315 1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTI 80 (195)
Q Consensus 1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~ 80 (195)
+||+|+++.||.++++.++|+.++...|...+++ +....+...|.+++++++++.|+..|+.|+..|+++ .....-
T Consensus 126 fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~--~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~--~~~~lg 201 (334)
T PF06027_consen 126 FLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSD--SSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP--RVEFLG 201 (334)
T ss_pred HHHhhhhHHHHHHHHHHHhhhhheeeeccccccc--CCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC--HHHHHH
Confidence 4799999999999999999999998877654321 234467889999999999999999999999998764 344456
Q ss_pred HHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHH----HHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHH
Q 029315 81 EMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIF----NSLGGILVGLVTSHAGGVRKGFVIVSALLVTAML 156 (195)
Q Consensus 81 ~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~----~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~ll 156 (195)
++.++|.+++.+...+ .|++++.+ + .|++..+..... ...--.++..++|+.++..-+.....+.+++.+.
T Consensus 202 ~~Glfg~ii~~iq~~i-le~~~i~~--~--~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~ 276 (334)
T PF06027_consen 202 MLGLFGFIISGIQLAI-LERSGIES--I--HWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALII 276 (334)
T ss_pred HHHHHHHHHHHHHHHh-eehhhhhc--c--CCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHH
Confidence 6778887766554432 34433321 1 234333322221 1223467789999999999999999999999999
Q ss_pred HHHhcCCCCchhhHHHHHHHhhhhheeccCCC
Q 029315 157 QFIFEGKPPSLYCLIALPLVVSSISIYQKYPY 188 (195)
Q Consensus 157 s~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~~ 188 (195)
++++||+++++..++|.++|+.|..+|...|+
T Consensus 277 ~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 277 DIFFFGYKFSWLYILAFALIIIGFVVYNLAES 308 (334)
T ss_pred HHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence 99999999999999999999999999987653
No 7
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.60 E-value=1.9e-14 Score=120.33 Aligned_cols=181 Identities=12% Similarity=0.109 Sum_probs=119.1
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 029315 1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTI 80 (195)
Q Consensus 1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~ 80 (195)
++|||++++||.++++.++|+++...++. .....|.++.+++++++++..++.+|..++++.+.+..+.
T Consensus 112 ~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~-----------~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~ 180 (302)
T TIGR00817 112 FLGQEFPSTLWLSLLPIVGGVALASDTEL-----------SFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYA 180 (302)
T ss_pred HhCCCCcHHHHHHHHHHHHHHhhhcCCcc-----------cccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHH
Confidence 36999999999999999999987642211 1224799999999999999999999988733222222222
Q ss_pred HHHHHHHHHhhhhhhccCCchhhhhccccc---ccch-hhHHHHHHHHHh-h----HHhhhhhhcccchhhHHHHHHHHH
Q 029315 81 EMSIVGSLCLLASISKSPDGEAIRQHGFFY---GWTP-LTLIPVIFNSLG-G----ILVGLVTSHAGGVRKGFVIVSALL 151 (195)
Q Consensus 81 ~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~---g~~~-~~~~~v~~~a~g-g----~~v~~vlk~~~~i~k~~~~~~siv 151 (195)
.....+.++..+.....++... ..++..+ ..+. ..+......+.+ . .+....+|+.++.+.+....+.++
T Consensus 181 ~~~~~~~~~l~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv 259 (302)
T TIGR00817 181 YISIMSLFLLSPPAFITEGPPF-LPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRV 259 (302)
T ss_pred HHHHHHHHHHHHHHHHHcchHH-HHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhh
Confidence 2223333333333222222111 1111111 0111 112212122211 1 122257999999999999999999
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccCCCccccC
Q 029315 152 VTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYPYQVKKK 193 (195)
Q Consensus 152 ~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~~~~~~~ 193 (195)
++.+++++++||+++...++|.++++.|+++|++.+.++|++
T Consensus 260 ~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~ 301 (302)
T TIGR00817 260 VVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPKP 301 (302)
T ss_pred heeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcCC
Confidence 999999999999999999999999999999999876555544
No 8
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.55 E-value=5.1e-13 Score=114.41 Aligned_cols=181 Identities=12% Similarity=0.102 Sum_probs=121.5
Q ss_pred CCCcCcHHHHHHHHHHHHHHHHHhcCCCCC---C-----------CCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHh
Q 029315 2 CRQRQSMQQIVAVFLLILAAVFLSIGEGSS---K-----------RSSSGDPDHILFYGIVPVLVASVLSGLASALCQWA 67 (195)
Q Consensus 2 l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~---~-----------~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~ 67 (195)
+|||++++||.++++.++|+.++..++... + +.+......+...|..+.+++++++++..++.++.
T Consensus 132 ~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~ 211 (358)
T PLN00411 132 FKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHI 211 (358)
T ss_pred hcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999876532210 0 00011122345679999999999999999999998
Q ss_pred hccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHH---HHHHHhhHHhhhhhhcccchhhHH
Q 029315 68 SQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPV---IFNSLGGILVGLVTSHAGGVRKGF 144 (195)
Q Consensus 68 ~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v---~~~a~gg~~v~~vlk~~~~i~k~~ 144 (195)
.+++++......++..+.+ ++..+.....++.+ .......++...+.++ +..+++-.+-++.+|+.+....+.
T Consensus 212 ~~~~~~~~~~t~~~~~~~~-~~~~~~~l~~~~~~---~~~~~~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~ 287 (358)
T PLN00411 212 MSEYPAAFTVSFLYTVCVS-IVTSMIGLVVEKNN---PSVWIIHFDITLITIVTMAIITSVYYVIHSWTVRHKGPLYLAI 287 (358)
T ss_pred HHHcCcHhHHHHHHHHHHH-HHHHHHHHHHccCC---cccceeccchHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHH
Confidence 8777443222223333333 33333322222111 0111122333222211 122334455667899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccC
Q 029315 145 VIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKY 186 (195)
Q Consensus 145 ~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~ 186 (195)
...+.++++.+++++++||+++...++|+++|+.|+++..+.
T Consensus 288 ~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~ 329 (358)
T PLN00411 288 FKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG 329 (358)
T ss_pred HHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999887754
No 9
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.55 E-value=6.2e-13 Score=111.15 Aligned_cols=175 Identities=9% Similarity=0.073 Sum_probs=118.1
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCch-HHHH
Q 029315 1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSS-YLMT 79 (195)
Q Consensus 1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~-~~~n 79 (195)
++|||++++||.++++.++|+.++..++.++ ......|+++.++++++.+...++.+|..++.+... ...+
T Consensus 107 ~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~--------~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~ 178 (299)
T PRK11453 107 TFGERLQGKQLAGIALAIFGVLVLIEDSLNG--------QHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLV 178 (299)
T ss_pred HhcCcCcHHHHHHHHHHHHhHHHhccccCCC--------cchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHH
Confidence 3799999999999999999998887432211 122347999999999999999999999765543221 1122
Q ss_pred HHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHHH-----HhhHHhhhhhhcccchhhHHHHHHHHHHHH
Q 029315 80 IEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNS-----LGGILVGLVTSHAGGVRKGFVIVSALLVTA 154 (195)
Q Consensus 80 ~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~a-----~gg~~v~~vlk~~~~i~k~~~~~~siv~s~ 154 (195)
......+.++........++.... ......+++..|..+...+ ++..+....+|+.++...+....++++++.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~ 256 (299)
T PRK11453 179 VWSALIPIIPFFVASLILDGSATM--IHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGL 256 (299)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhh--hhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 222333333333222111111110 0111233444444444443 344555666788999999999999999999
Q ss_pred HHHHHhcCCCCchhhHHHHHHHhhhhheecc
Q 029315 155 MLQFIFEGKPPSLYCLIALPLVVSSISIYQK 185 (195)
Q Consensus 155 lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~ 185 (195)
+++++++||+++..+++|+.+++.|+++-..
T Consensus 257 ~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~ 287 (299)
T PRK11453 257 ASAALLLDERLTGLQFLGAVLIMAGLYINVF 287 (299)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999877543
No 10
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.49 E-value=1.4e-12 Score=111.56 Aligned_cols=175 Identities=12% Similarity=0.151 Sum_probs=123.2
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC---chHH
Q 029315 1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKH---SSYL 77 (195)
Q Consensus 1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~---~~~~ 77 (195)
++|||++++||.++++.++|+++...++. .....|+++.+++++++++..++.+|.+++++. +...
T Consensus 161 ~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~-----------~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~ 229 (350)
T PTZ00343 161 FLKQFLNLYAYLSLIPIVGGVALASVKEL-----------HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTA 229 (350)
T ss_pred HhCCCccHHHHHHHHHHHHHHHheecccc-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCH
Confidence 37999999999999999999999874322 123579999999999999999999999977641 2222
Q ss_pred HHHHH--HHHHHHHhhhhhhccCCchhhhh--c--ccccccch-hhHHHHHHHHHhhHHhh----hhhhcccchhhHHHH
Q 029315 78 MTIEM--SIVGSLCLLASISKSPDGEAIRQ--H--GFFYGWTP-LTLIPVIFNSLGGILVG----LVTSHAGGVRKGFVI 146 (195)
Q Consensus 78 ~n~~l--~~~~~l~~~~~~~~~~~~~~~~~--~--~ff~g~~~-~~~~~v~~~a~gg~~v~----~vlk~~~~i~k~~~~ 146 (195)
.|... ...|.++.+......+..+.... . .....+.. ..+..++..++.+.+.+ ..+++.+....+.+.
T Consensus 230 ~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~ 309 (350)
T PTZ00343 230 SNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVAN 309 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 33322 33444444333222222111000 0 11112221 12223444455566656 489999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccC
Q 029315 147 VSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKY 186 (195)
Q Consensus 147 ~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~ 186 (195)
.+..+++.++|+++|||+++...++|.++++.|+++|+..
T Consensus 310 ~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 310 TLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999864
No 11
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.49 E-value=4.6e-13 Score=106.57 Aligned_cols=179 Identities=14% Similarity=0.185 Sum_probs=133.8
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 029315 1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTI 80 (195)
Q Consensus 1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~ 80 (195)
+.||++++++..+++++++||++..+.+..- .+.++++..+|.++++++-.+.|+.|+.+||+.+.+.++-.....
T Consensus 132 ~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv----~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~ 207 (337)
T KOG1580|consen 132 FAHKSYHWRKYCCVLMIVVGVALFMYKENKV----GGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMF 207 (337)
T ss_pred hhcccccHHHHHHHHHHHHHHHHhhcccccc----CCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHH
Confidence 4689999999999999999999999876542 244556778999999999999999999999999887653222222
Q ss_pred HHHHHHHHHhhhhhhccCCchhhhhcccccccchhhH---HHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHH
Q 029315 81 EMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTL---IPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQ 157 (195)
Q Consensus 81 ~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~---~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls 157 (195)
-+.+++++....+..+ .+|....-.|-+.++...| +..+..++|..++-..+-+.+...+++.++..-.++.++|
T Consensus 208 ~~NlwStL~Lg~g~lf--TGElweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~S 285 (337)
T KOG1580|consen 208 YTNLWSTLYLGAGLLF--TGELWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILIS 285 (337)
T ss_pred HHHHHHHHHhhhhhee--hhhHHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHH
Confidence 2455676655554433 2332222223333332222 2234556688888888899999999999999999999999
Q ss_pred HHhcCCCCchhhHHHHHHHhhhhheecc
Q 029315 158 FIFEGKPPSLYCLIALPLVVSSISIYQK 185 (195)
Q Consensus 158 ~~lfg~~~t~~~~~G~~lV~~s~~ly~~ 185 (195)
+++|++|++..+++|..+|+.+...--.
T Consensus 286 Vllf~npls~rQwlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 286 VLLFNNPLSGRQWLGTVLVFSALTADVV 313 (337)
T ss_pred HHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence 9999999999999999999999765443
No 12
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.49 E-value=1.2e-12 Score=109.27 Aligned_cols=173 Identities=9% Similarity=0.023 Sum_probs=116.2
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 029315 1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTI 80 (195)
Q Consensus 1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~ 80 (195)
++|||++++||.++++.++|+.++..++.+.+.++......+...|..+.+.++++++...++.+|..++.+ +... .
T Consensus 112 ~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~--~ 188 (295)
T PRK11689 112 FNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITL--F 188 (295)
T ss_pred HhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhH--H
Confidence 369999999999999999999888755431110000001112346999999999999999999999865543 2211 1
Q ss_pred HHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHH----HHhhHHhhhhhhcccchhhHHHHHHHHHHHHHH
Q 029315 81 EMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFN----SLGGILVGLVTSHAGGVRKGFVIVSALLVTAML 156 (195)
Q Consensus 81 ~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~----a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~ll 156 (195)
+ ...+ +........ +++. ....++..|..+... .++..+-...+|+.+....+...+++++++.++
T Consensus 189 ~-~~~~-~~l~~~~~~--~~~~------~~~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~ 258 (295)
T PRK11689 189 F-ILTA-LALWIKYFL--SPQP------AMVFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAAL 258 (295)
T ss_pred H-HHHH-HHHHHHHHH--hcCc------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHH
Confidence 1 1122 222221111 1111 012333333322222 224466778999999999999999999999999
Q ss_pred HHHhcCCCCchhhHHHHHHHhhhhheeccC
Q 029315 157 QFIFEGKPPSLYCLIALPLVVSSISIYQKY 186 (195)
Q Consensus 157 s~~lfg~~~t~~~~~G~~lV~~s~~ly~~~ 186 (195)
+++++||+++..+++|.++|+.|+++-...
T Consensus 259 ~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 259 AALLLSTPLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence 999999999999999999999998665443
No 13
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.48 E-value=3.1e-12 Score=104.17 Aligned_cols=164 Identities=18% Similarity=0.132 Sum_probs=116.7
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 029315 1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTI 80 (195)
Q Consensus 1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~ 80 (195)
++|||++++||.++++.++|+.++..++.. .+...|+.+.++++++.+...++..+..++.+.+....+.
T Consensus 94 ~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~----------~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~ 163 (260)
T TIGR00950 94 MGKERPRKLVLLAAVLGLAGAVLLLSDGNL----------SINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTG 163 (260)
T ss_pred HccCCCcHHHHHHHHHHHHhHHhhccCCcc----------cccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHH
Confidence 479999999999999999999998643311 2335799999999999999999999888766543333332
Q ss_pred HHHHHHHHHhhhhhhccCCchhhhhcccccccch--hhHHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHH
Q 029315 81 EMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTP--LTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQF 158 (195)
Q Consensus 81 ~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~--~~~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~ 158 (195)
..+..+.++........++... ....++ ..+..++...++..+....+|+.+....+.....+++++.++++
T Consensus 164 ~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~ 237 (260)
T TIGR00950 164 WVLLLGALLLLPFAWFLGPNPQ------ALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGL 237 (260)
T ss_pred HHHHHHHHHHHHHHHhcCCCCC------cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 2233443444333222221110 011111 11122233445667788899999999999999999999999999
Q ss_pred HhcCCCCchhhHHHHHHHhhhh
Q 029315 159 IFEGKPPSLYCLIALPLVVSSI 180 (195)
Q Consensus 159 ~lfg~~~t~~~~~G~~lV~~s~ 180 (195)
+++||+++...++|..+++.|+
T Consensus 238 ~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 238 LILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHhCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999998875
No 14
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.47 E-value=2.8e-12 Score=106.86 Aligned_cols=168 Identities=14% Similarity=0.027 Sum_probs=119.0
Q ss_pred CCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 029315 2 CRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIE 81 (195)
Q Consensus 2 l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~ 81 (195)
+|||++++||.++++.++|+.++..++.. +....|.+..++++++.++..++.+|.-++ ++......+
T Consensus 117 ~~e~~~~~~~~~~~la~~Gv~ll~~~~~~----------~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~ 184 (292)
T PRK11272 117 FGIRTRKLEWLGIAIGLAGIVLLNSGGNL----------SGNPWGAILILIASASWAFGSVWSSRLPLP--VGMMAGAAE 184 (292)
T ss_pred hcccCchhHHHHHHHHHHhHHHHhcCccc----------ccchHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHH
Confidence 59999999999999999999888643211 122479999999999999999998886432 234444455
Q ss_pred HHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHH-----HHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHH
Q 029315 82 MSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPV-----IFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAML 156 (195)
Q Consensus 82 l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v-----~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~ll 156 (195)
+...+. .........++.. ....+...|..+ ....++..+....+|+.+....+....++++++.++
T Consensus 185 ~~~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~ 256 (292)
T PRK11272 185 MLAAGV-VLLIASLLSGERL-------TALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLL 256 (292)
T ss_pred HHHHHH-HHHHHHHHcCCcc-------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 444443 2222221111110 001122233333 333445567778889999999999999999999999
Q ss_pred HHHhcCCCCchhhHHHHHHHhhhhheeccCCCc
Q 029315 157 QFIFEGKPPSLYCLIALPLVVSSISIYQKYPYQ 189 (195)
Q Consensus 157 s~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~~~ 189 (195)
+++++||+++...++|.++++.|+++.+..+++
T Consensus 257 ~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~ 289 (292)
T PRK11272 257 GTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL 289 (292)
T ss_pred HHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999887765543
No 15
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.34 E-value=4.4e-11 Score=99.88 Aligned_cols=163 Identities=13% Similarity=0.094 Sum_probs=106.1
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 029315 1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTI 80 (195)
Q Consensus 1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~ 80 (195)
++|||++++||.++++.++|+.++..++.+ .. ...+++++++++..++.+|..++...+....+.
T Consensus 120 ~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~----------~~-----~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~ 184 (296)
T PRK15430 120 FLGERFRRMQWLAVILAICGVLVQLWTFGS----------LP-----IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETM 184 (296)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHcCC----------cc-----HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 369999999999999999999987642110 01 346667888888888877764322222233343
Q ss_pred HHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHH--HHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHH
Q 029315 81 EMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLI--PVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQF 158 (195)
Q Consensus 81 ~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~--~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~ 158 (195)
.....+..+. ... ..+...... ...+..+.+. .....+++..+....+|+.++...+...+++++++.++++
T Consensus 185 ~~~~~~~~~~-~~~--~~~~~~~~~---~~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~ 258 (296)
T PRK15430 185 WLLPVAAIYL-FAI--ADSSTSHMG---QNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAV 258 (296)
T ss_pred HHHHHHHHHH-HHH--ccCCccccc---CCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3333332221 111 111100000 0011111111 1223445678999999999999999999999999999999
Q ss_pred HhcCCCCchhhHHHHHHHhhhhheec
Q 029315 159 IFEGKPPSLYCLIALPLVVSSISIYQ 184 (195)
Q Consensus 159 ~lfg~~~t~~~~~G~~lV~~s~~ly~ 184 (195)
+++||+|+..+++|+.+|+.++-+..
T Consensus 259 l~l~E~~~~~~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 259 TFYGEKPGADKMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999977754444
No 16
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.33 E-value=1.2e-10 Score=97.20 Aligned_cols=170 Identities=18% Similarity=0.116 Sum_probs=114.7
Q ss_pred CcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHH
Q 029315 4 QRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMS 83 (195)
Q Consensus 4 ~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~ 83 (195)
||.++.+| +.+.++|+.++..++.+. +.....|.++.++++++.+...++.+|..++++ +.. ...+.
T Consensus 117 ~~~~~~~~--~~i~~~Gv~li~~~~~~~--------~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~-~~~~~- 183 (293)
T PRK10532 117 RRPVDFVW--VVLAVLGLWFLLPLGQDV--------SHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PAT-VAIGS- 183 (293)
T ss_pred CChHHHHH--HHHHHHHHheeeecCCCc--------ccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chH-HHHHH-
Confidence 55555555 556688988765332211 012247999999999999998888888876553 322 23433
Q ss_pred HHHHHHhhhhhhccCCchhhhhcccccccchh-----hHHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHH
Q 029315 84 IVGSLCLLASISKSPDGEAIRQHGFFYGWTPL-----TLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQF 158 (195)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~-----~~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~ 158 (195)
..+.+........ .+.+ . .+++. .++.++...++..+....+|+.++...+...+++++++.++++
T Consensus 184 ~~~~~~l~~~~~~-~~~~------~--~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~ 254 (293)
T PRK10532 184 LIAALIFVPIGAL-QAGE------A--LWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGM 254 (293)
T ss_pred HHHHHHHHHHHHH-ccCc------c--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHH
Confidence 3333333332211 1110 0 12222 2333444455566778999999999999999999999999999
Q ss_pred HhcCCCCchhhHHHHHHHhhhhheeccC-CCccccCCC
Q 029315 159 IFEGKPPSLYCLIALPLVVSSISIYQKY-PYQVKKKEV 195 (195)
Q Consensus 159 ~lfg~~~t~~~~~G~~lV~~s~~ly~~~-~~~~~~~~~ 195 (195)
+++||+++..+++|.++|+.++..+... ++++|-|||
T Consensus 255 l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~~~~ 292 (293)
T PRK10532 255 IFLGETLTLIQWLALGAIIAASMGSTLTIRREPKIKEV 292 (293)
T ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 9999999999999999999998777655 466677765
No 17
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.17 E-value=2.3e-09 Score=87.67 Aligned_cols=170 Identities=19% Similarity=0.202 Sum_probs=117.9
Q ss_pred CCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 029315 2 CRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIE 81 (195)
Q Consensus 2 l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~ 81 (195)
+|||+++++|.++++.++|+.++..++.... .. ...|..+.++++++.++..++.++.. +.+........+
T Consensus 119 ~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~-------~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~ 189 (292)
T COG0697 119 LGERLSLLQILGILLALAGVLLILLGGGGGG-------IL-SLLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQ 189 (292)
T ss_pred ccCCCcHHHHHHHHHHHHhHHheecCCCcch-------hH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHH
Confidence 5999999999999999999999987665421 01 57899999999999999999999888 332222222233
Q ss_pred HHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhc
Q 029315 82 MSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFE 161 (195)
Q Consensus 82 l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lf 161 (195)
+.... ...... ...+.. .......+....+..+....++..+....+|..+....+.....+++.+.+++++++
T Consensus 190 ~~~~~--~~~~~~-~~~~~~---~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~ 263 (292)
T COG0697 190 LLLAL--LLLLLF-FLSGFG---APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLL 263 (292)
T ss_pred HHHHH--HHHHHH-Hhcccc---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh
Confidence 22111 111111 111110 000011122222333333335667777889999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHhhhhheeccC
Q 029315 162 GKPPSLYCLIALPLVVSSISIYQKY 186 (195)
Q Consensus 162 g~~~t~~~~~G~~lV~~s~~ly~~~ 186 (195)
||+++...++|.++++.|+.+....
T Consensus 264 ~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 264 GEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999998887765
No 18
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.14 E-value=2.4e-10 Score=94.65 Aligned_cols=166 Identities=13% Similarity=0.055 Sum_probs=105.3
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC--chH-H
Q 029315 1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKH--SSY-L 77 (195)
Q Consensus 1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~--~~~-~ 77 (195)
++|||++++||.++.+.+.|+.++..++.. . ....|..+.++++++.+...++.++..++.++ +.. .
T Consensus 110 ~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~-------~---~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~ 179 (281)
T TIGR03340 110 TLGETLSPLAWLGILIITLGLLVLGLSRFA-------Q---HRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGY 179 (281)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhccccc-------c---cchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHH
Confidence 379999999999999999999988754321 0 11247777888888888877765554332221 111 1
Q ss_pred HHHHHHHHHHHHhhhhhhccCCchhhhhcccccccch--hhHHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHH
Q 029315 78 MTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTP--LTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAM 155 (195)
Q Consensus 78 ~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~--~~~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~l 155 (195)
...++-..+ ++....... .++.... ....+. ..+.......++..+....+|+.+....+.....+++++.+
T Consensus 180 ~~~~~~~~~-~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l 253 (281)
T TIGR03340 180 LGIGFLAMG-WPFLLLYLK-RHGRSMF----PYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVV 253 (281)
T ss_pred HHHHHHHHH-HHHHHHHHH-Hhccchh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHH
Confidence 122211111 222121110 0111000 001111 12222333344556677889999999989899999999999
Q ss_pred HHHHhcCCCCchhhHHHHHHHhhhhhe
Q 029315 156 LQFIFEGKPPSLYCLIALPLVVSSISI 182 (195)
Q Consensus 156 ls~~lfg~~~t~~~~~G~~lV~~s~~l 182 (195)
++++++||+++...++|+.+++.|+++
T Consensus 254 ~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 254 LGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 999999999999999999999999864
No 19
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.12 E-value=1e-09 Score=90.35 Aligned_cols=177 Identities=16% Similarity=0.135 Sum_probs=138.4
Q ss_pred CCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 029315 2 CRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIE 81 (195)
Q Consensus 2 l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~ 81 (195)
-|||++....++..+...|+.+..+.+.+++ +....+.+..+|+.++...-+..|+....+++++|+++.+.|....-
T Consensus 131 y~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s--~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~ 208 (327)
T KOG1581|consen 131 YGRKYSSFEYLVAFLISLGVSIFSLFPNSDS--SSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFG 208 (327)
T ss_pred hcCccCcHHHHHHHHHHhheeeEEEecCCCC--ccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHH
Confidence 4899999999999999999999988765542 22233357789999999999999999999999999998888877777
Q ss_pred HHHHHHHHhhhhhhccCCchhhhhcccccccc---hhhHHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHH
Q 029315 82 MSIVGSLCLLASISKSPDGEAIRQHGFFYGWT---PLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQF 158 (195)
Q Consensus 82 l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~---~~~~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~ 158 (195)
+.+++++.+.........+. ..-.|-.-.. +-..+.-.++++|...+...+...++++-...++..-.++.++|.
T Consensus 209 vNLf~~i~~~~~li~qg~~~--~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~ 286 (327)
T KOG1581|consen 209 VNLFSAILNGTYLILQGHLL--PAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSC 286 (327)
T ss_pred HHHHHHHHHHHhhhcCCCCc--hHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 78888777766532211111 1111111111 112344566788899999999999999999999999999999999
Q ss_pred HhcCCCCchhhHHHHHHHhhhhhe
Q 029315 159 IFEGKPPSLYCLIALPLVVSSISI 182 (195)
Q Consensus 159 ~lfg~~~t~~~~~G~~lV~~s~~l 182 (195)
..||++++..+++|..+|+.++++
T Consensus 287 i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 287 IVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HHhCCccchhhccCeeeehHHHHH
Confidence 999999999999999999999754
No 20
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.04 E-value=1.1e-08 Score=76.83 Aligned_cols=140 Identities=16% Similarity=0.160 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccC-----CCchHHHHHHHHHHHHHHhhhhhhccCCchhhhh-ccccc-cc--chhh
Q 029315 46 GIVPVLVASVLSGLASALCQWASQVK-----KHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQ-HGFFY-GW--TPLT 116 (195)
Q Consensus 46 G~~~~l~a~~~s~~a~vy~e~~~k~~-----~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~-~~ff~-g~--~~~~ 116 (195)
|.++++.+++++++-.++.|+.+|++ +.+.+..-..++..+.++..+.....++++.... ....+ .. +...
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 77899999999999999999999984 2232222222344554444444333343331111 11111 11 1223
Q ss_pred HHHHHHHHHh----hHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheecc
Q 029315 117 LIPVIFNSLG----GILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQK 185 (195)
Q Consensus 117 ~~~v~~~a~g----g~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~ 185 (195)
+..+...++- -+..-.++|+.+++..+....+-.++..++|+++|||++|...++|..+.+.|.++|++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 3333333332 25566889999999999999999999999999999999999999999999999999974
No 21
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.84 E-value=3.9e-08 Score=80.12 Aligned_cols=173 Identities=18% Similarity=0.202 Sum_probs=121.2
Q ss_pred CCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHH-
Q 029315 3 RQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIE- 81 (195)
Q Consensus 3 ~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~- 81 (195)
++|+......|..++.+|.+...+.|.+.+ ++. ..+|+.+.-.|-++.|+.|-.+|+.+|..+.+.. +.++
T Consensus 155 GkRY~v~d~~aA~lm~lGli~FTLADs~~s------PNF-~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~-Emvfy 226 (367)
T KOG1582|consen 155 GKRYGVHDYIAAMLMSLGLIWFTLADSQTS------PNF-NLIGVMMISGALLADAVIGNVQEKAMKMNPASSS-EMVFY 226 (367)
T ss_pred cccccHHHHHHHHHHHHHHHhhhhcccccC------CCc-ceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcc-eEEEe
Confidence 789999999999999999999999887643 222 3589999999999999999999999998865431 1111
Q ss_pred HHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHHHHh----hHHhhhhhhcccchhhHHHHHHHHHHHHHHH
Q 029315 82 MSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLG----GILVGLVTSHAGGVRKGFVIVSALLVTAMLQ 157 (195)
Q Consensus 82 l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~a~g----g~~v~~vlk~~~~i~k~~~~~~siv~s~lls 157 (195)
-|..|..+.++.+.+. ++-.+...|..-.++.++...+..++. -..+-..+|..++....-.++..-.+|.++|
T Consensus 227 Sy~iG~vflf~~mvlT--ge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lS 304 (367)
T KOG1582|consen 227 SYGIGFVFLFAPMVLT--GELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLS 304 (367)
T ss_pred eecccHHHHHHHHHhc--ccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHH
Confidence 1334434444433322 221122222222333355444444442 2344455677777777777888888999999
Q ss_pred HHhcCCCCchhhHHHHHHHhhhhheecc
Q 029315 158 FIFEGKPPSLYCLIALPLVVSSISIYQK 185 (195)
Q Consensus 158 ~~lfg~~~t~~~~~G~~lV~~s~~ly~~ 185 (195)
+++|..|+|....-|..+|+.|+|+--.
T Consensus 305 fllFsKPfT~qy~~~gllv~lgI~Ln~y 332 (367)
T KOG1582|consen 305 FLLFSKPFTEQYVWSGLLVVLGIYLNMY 332 (367)
T ss_pred HHHHcCchHHHHhhhhHHHHHHHHhhcc
Confidence 9999999999999999999999987554
No 22
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=98.65 E-value=1e-07 Score=80.72 Aligned_cols=177 Identities=15% Similarity=0.164 Sum_probs=113.3
Q ss_pred CCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 029315 3 RQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEM 82 (195)
Q Consensus 3 ~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l 82 (195)
++|+|..+.+++++=+.|++++..++.+..+ +.++.+...|.++.++++++.|...+...|-..+++...-++ ++.
T Consensus 208 ~e~ft~sKllav~~si~GViiVt~~~s~~~~---~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~-lff 283 (416)
T KOG2765|consen 208 VERFTLSKLLAVFVSIAGVIIVTMGDSKQNS---DLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQ-LFF 283 (416)
T ss_pred cchhhHHHHHHHHHhhccEEEEEeccccccc---cCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHH-HHH
Confidence 6899999999999999999999887665421 233456789999999999966655555554444443232222 333
Q ss_pred HHHHHHHhhhhhhc---cCCchhhhhccccc-ccchhhHHHHHHHHHhh----HHhhhhhhcccchhhHHHHHHHHHHHH
Q 029315 83 SIVGSLCLLASISK---SPDGEAIRQHGFFY-GWTPLTLIPVIFNSLGG----ILVGLVTSHAGGVRKGFVIVSALLVTA 154 (195)
Q Consensus 83 ~~~~~l~~~~~~~~---~~~~~~~~~~~ff~-g~~~~~~~~v~~~a~gg----~~v~~vlk~~~~i~k~~~~~~siv~s~ 154 (195)
.+.| +++++..+. ..|. ....-|+ .-+.-.-.+++.+.+|- .+=+..+-..+..+.+.+.+++|.++.
T Consensus 284 GfvG-LfnllllwP~l~iL~~---~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~ 359 (416)
T KOG2765|consen 284 GFVG-LFNLLLLWPPLIILDF---FGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAM 359 (416)
T ss_pred HHHH-HHHHHHHhHHHHHHHH---hccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHH
Confidence 4455 455444320 0000 0000011 11111122333333322 222334445788888889999999999
Q ss_pred HHHHHhcCCCCchhhHHHHHHHhhhhheeccCC
Q 029315 155 MLQFIFEGKPPSLYCLIALPLVVSSISIYQKYP 187 (195)
Q Consensus 155 lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~ 187 (195)
+.+.++-|.++++.+++|+..|+.|-.+.+...
T Consensus 360 ~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 360 FADVLIKGKHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence 999999999999999999999999977766543
No 23
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.61 E-value=1.4e-06 Score=71.64 Aligned_cols=162 Identities=18% Similarity=0.154 Sum_probs=105.2
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC-CchHHHH
Q 029315 1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKK-HSSYLMT 79 (195)
Q Consensus 1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~-~~~~~~n 79 (195)
++|||+|+.||+|+.+..+||....+...+-+ ... +.-|+..|+.|..- |..|-.. .....+.
T Consensus 119 flkErls~~Q~iAV~lA~~GV~~~~~~~g~lp-----------wva----l~la~sf~~Ygl~R-K~~~v~a~~g~~lE~ 182 (293)
T COG2962 119 FLKERLSRLQWIAVGLAAAGVLIQTWLLGSLP-----------WVA----LALALSFGLYGLLR-KKLKVDALTGLTLET 182 (293)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHcCCCc-----------HHH----HHHHHHHHHHHHHH-HhcCCchHHhHHHHH
Confidence 37999999999999999999998876433211 122 22334444433322 3332221 2344555
Q ss_pred HHHHHHHHHHhhhhhhccCCchhhhhccccc-ccchhhHHHHHHHHHhh---HHhhhhhhcccchhhHHHHHHHHHHHHH
Q 029315 80 IEMSIVGSLCLLASISKSPDGEAIRQHGFFY-GWTPLTLIPVIFNSLGG---ILVGLVTSHAGGVRKGFVIVSALLVTAM 155 (195)
Q Consensus 80 ~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~-g~~~~~~~~v~~~a~gg---~~v~~vlk~~~~i~k~~~~~~siv~s~l 155 (195)
+.+.-.+.... . ...|..+ |.. +-+...++.+....+.+ ++.+..-|+..-.+-++..+.++.+-.+
T Consensus 183 l~l~p~al~yl-~---~l~~~~~-----~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fl 253 (293)
T COG2962 183 LLLLPVALIYL-L---FLADSGQ-----FLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFL 253 (293)
T ss_pred HHHhHHHHHHH-H---HHhcCch-----hhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 55554442222 1 1222211 111 12223334444444443 6677778889999999999999999999
Q ss_pred HHHHhcCCCCchhhHHHHHHHhhhhheeccCC
Q 029315 156 LQFIFEGKPPSLYCLIALPLVVSSISIYQKYP 187 (195)
Q Consensus 156 ls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~ 187 (195)
+++++|||+++....+.-+.+-.|..+|+.+.
T Consensus 254 lav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~ 285 (293)
T COG2962 254 LAVLIFGEPFDSDQLVTFAFIWLALALFSIDG 285 (293)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988765
No 24
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.61 E-value=4.9e-07 Score=74.11 Aligned_cols=182 Identities=12% Similarity=0.171 Sum_probs=116.9
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCc-hHHHH
Q 029315 1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHS-SYLMT 79 (195)
Q Consensus 1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~-~~~~n 79 (195)
+|||+++.+||+++....+|++++...|...++++. ..-.+.+.|.++.+++.++-|..-++-||.+|+++.+ .....
T Consensus 133 ~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~-~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg 211 (372)
T KOG3912|consen 133 FLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPY-TDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVG 211 (372)
T ss_pred HHhcccchhhHHHHHHHHhhhheeeeeecccccCCc-cccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhh
Confidence 479999999999999999999999876654332221 1224668999999999999999999999999988643 22222
Q ss_pred HH----HHHHHHHHhhhhhhccCCchhhh--hcccccccch----hhHHHHHHHHHhhHHhh---------hhhhcccch
Q 029315 80 IE----MSIVGSLCLLASISKSPDGEAIR--QHGFFYGWTP----LTLIPVIFNSLGGILVG---------LVTSHAGGV 140 (195)
Q Consensus 80 ~~----l~~~~~l~~~~~~~~~~~~~~~~--~~~ff~g~~~----~~~~~v~~~a~gg~~v~---------~vlk~~~~i 140 (195)
.+ +-+.+. ..+.+...+.+++.+ .+|-++.|.- ..--+.+.-+++|.+++ .+-|+.++.
T Consensus 212 ~eGlfG~v~~sl--L~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~Sat 289 (372)
T KOG3912|consen 212 WEGLFGLVILSL--LAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSAT 289 (372)
T ss_pred hhhhHHHHHHHH--HHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHH
Confidence 22 122221 111111122222111 1222222110 00001111122222222 456777777
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheecc
Q 029315 141 RKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQK 185 (195)
Q Consensus 141 ~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~ 185 (195)
.+...-.+...+--+++...+.|.+...+++|.++...|+.+|+.
T Consensus 290 tRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~ 334 (372)
T KOG3912|consen 290 TRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQ 334 (372)
T ss_pred HHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777788888888888899999999999999999999999984
No 25
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.60 E-value=4.2e-09 Score=88.45 Aligned_cols=181 Identities=14% Similarity=0.229 Sum_probs=117.5
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 029315 1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTI 80 (195)
Q Consensus 1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~ 80 (195)
+.+|++++.-|.+++....||.+....+.+ -...|.+..+.+.+..++-.++.++.+++++.+..-.|.
T Consensus 130 ~~~~~~s~~~~lsL~piv~GV~ias~~e~~-----------fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~l 198 (316)
T KOG1441|consen 130 LLGKTYSSMTYLSLLPIVFGVAIASVTELS-----------FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNL 198 (316)
T ss_pred HhCCCCcceEEEEEEEeeeeEEEeeecccc-----------ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHH
Confidence 357899999999999999999888875542 225899999999999999999999999866555444443
Q ss_pred HHH--HHHHHHhhhhhhccCCchhhhhcc-cccccchhhHHHHHHHHHh---hHHhhhhhhcccchhhHHHHHHHHHHHH
Q 029315 81 EMS--IVGSLCLLASISKSPDGEAIRQHG-FFYGWTPLTLIPVIFNSLG---GILVGLVTSHAGGVRKGFVIVSALLVTA 154 (195)
Q Consensus 81 ~l~--~~~~l~~~~~~~~~~~~~~~~~~~-ff~g~~~~~~~~v~~~a~g---g~~v~~vlk~~~~i~k~~~~~~siv~s~ 154 (195)
-.| -.+..+.++......++... . + -+..|+...+..++...+. -+..-.++...+++.-+.+...=-++..
T Consensus 199 l~y~ap~s~~~Ll~P~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi 276 (316)
T KOG1441|consen 199 LYYTAPISLIFLLIPFLDYVEGNKF-V-GFLTAPWFVTFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVI 276 (316)
T ss_pred HHHhhhHHHHHHhcchHhhhcccce-e-eeeccccchhhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEE
Confidence 322 22222222121111222211 1 1 1224444433333333221 1334455666666655554444445667
Q ss_pred HHHHHhcCCCCchhhHHHHHHHhhhhheeccCCCccccCC
Q 029315 155 MLQFIFEGKPPSLYCLIALPLVVSSISIYQKYPYQVKKKE 194 (195)
Q Consensus 155 lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~~~~~~~~ 194 (195)
..|+++|+++.|+...+|..+-++|+++|++...++|+++
T Consensus 277 ~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~~ 316 (316)
T KOG1441|consen 277 VVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKGK 316 (316)
T ss_pred EeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 7889999999999999999999999999999877666543
No 26
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.48 E-value=4.7e-06 Score=69.57 Aligned_cols=165 Identities=13% Similarity=0.166 Sum_probs=108.2
Q ss_pred CCCcCcHHH----HHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchH-
Q 029315 2 CRQRQSMQQ----IVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSY- 76 (195)
Q Consensus 2 l~~~ls~~q----w~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~- 76 (195)
+|||.+++| +.++++.++|+.++...+.++. ++++..+...|+...++++++.++..+..++.. + ++..
T Consensus 108 f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~---~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~~--~-~~~~~ 181 (290)
T TIGR00776 108 FGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSA---GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAFG--V-DGLSV 181 (290)
T ss_pred hhhccchHHHHHHHHHHHHHHHhHheEEecccccc---ccccccchhhHHHHHHHHHHHHHHHHHHHHHcC--C-Cccee
Confidence 689999999 9999999999998865432211 101002345699999999999988888888652 3 2322
Q ss_pred --HHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchh-hHHHHHHHHHhhHHhhhhhh-cccchhhHHHHHHHHHH
Q 029315 77 --LMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPL-TLIPVIFNSLGGILVGLVTS-HAGGVRKGFVIVSALLV 152 (195)
Q Consensus 77 --~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~-~~~~v~~~a~gg~~v~~vlk-~~~~i~k~~~~~~siv~ 152 (195)
.+...+.+.+++.+... .+.++ ...-+.+ ....-....++-.+...-.+ +.+.......+..+++.
T Consensus 182 ~~~~~~g~~~~~~~~~~~~----~~~~~------~~~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvi 251 (290)
T TIGR00776 182 LLPQAIGMVIGGIIFNLGH----ILAKP------LKKYAILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVII 251 (290)
T ss_pred hhHHHHHHHHHHHHHHHHH----hcccc------hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHH
Confidence 25555555665444332 01010 0111111 11111112333334445556 88888889999999999
Q ss_pred HHHHHHHhcCCCCchhhH----HHHHHHhhhhhe
Q 029315 153 TAMLQFIFEGKPPSLYCL----IALPLVVSSISI 182 (195)
Q Consensus 153 s~lls~~lfg~~~t~~~~----~G~~lV~~s~~l 182 (195)
+++.+++++||+.+...+ +|.++++.++.+
T Consensus 252 a~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l 285 (290)
T TIGR00776 252 STLGGILILGEKKTKREMIAISVGIILIIIAANI 285 (290)
T ss_pred HHHHHHHHhccCCCcceeehhHHHHHHHHHHHHH
Confidence 999999999999999999 999999998754
No 27
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.47 E-value=5.3e-06 Score=67.65 Aligned_cols=139 Identities=14% Similarity=0.041 Sum_probs=81.4
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHH
Q 029315 1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTI 80 (195)
Q Consensus 1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~ 80 (195)
++|||++++||.++++.++|++++..++.+ .. ...++++++.+...++.+|..+++.......+.
T Consensus 117 ~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~----------~~-----~~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~ 181 (256)
T TIGR00688 117 FLKERISRFQFIAVIIATLGVISNIVLKGS----------LP-----WEALVLAFSFTAYGLIRKALKNTDLAGFCLETL 181 (256)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHcCC----------ch-----HHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHH
Confidence 379999999999999999999987543110 11 245678888888888877764322111111111
Q ss_pred HHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHh
Q 029315 81 EMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIF 160 (195)
Q Consensus 81 ~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~l 160 (195)
. . .+.........++...........|...... .....++..+....+|+.++...+...+++++++.++++++
T Consensus 182 ~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 182 S----L-MPVAIYYLLQTDFATVQQTNPFPIWLLLVLA-GLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred H----H-HHHHHHHHHHhccCcccccCchhHHHHHHHH-HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1 1111111011111100000000012111111 22345577889999999999999999999999999999764
No 28
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.24 E-value=1.1e-05 Score=57.73 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=55.4
Q ss_pred HHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhee
Q 029315 123 NSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIY 183 (195)
Q Consensus 123 ~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly 183 (195)
.+++..+....+|+.+....+....++++++.++++++++|+++...++|..+++.|+.+.
T Consensus 64 ~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 64 TALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred eehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4556688888999999999999999999999999999999999999999999999997653
No 29
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.21 E-value=1.9e-05 Score=65.52 Aligned_cols=173 Identities=20% Similarity=0.235 Sum_probs=106.3
Q ss_pred CcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC---Cc--hHHH
Q 029315 4 QRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKK---HS--SYLM 78 (195)
Q Consensus 4 ~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~---~~--~~~~ 78 (195)
||.++.=..-+.+..+|+.+..+.+.+ =...|..++..++.+||+--.+.++++++++ ++ ..+.
T Consensus 134 Ek~~w~L~l~v~lI~~Glflft~KsTq-----------f~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~ 202 (349)
T KOG1443|consen 134 EKFRWALVLIVLLIAVGLFLFTYKSTQ-----------FNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIF 202 (349)
T ss_pred HHHHHHHHHHHHHHhhheeEEEecccc-----------eeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHH
Confidence 344444445556666777777776553 1257999999999999999999999998875 11 1223
Q ss_pred HHH-HHHHHHHHhhhhhhccCCchhhhhcccccccch-hhHHHHHHHHHhhHHhhhhhhc--------ccchhhHHHHHH
Q 029315 79 TIE-MSIVGSLCLLASISKSPDGEAIRQHGFFYGWTP-LTLIPVIFNSLGGILVGLVTSH--------AGGVRKGFVIVS 148 (195)
Q Consensus 79 n~~-l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~-~~~~~v~~~a~gg~~v~~vlk~--------~~~i~k~~~~~~ 148 (195)
.+| ...++.++... ..++-........|+-+++ ..+-++...++||++. +++-. .+.+.-+++--+
T Consensus 203 ~l~p~M~~~Ll~~~l---~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~la-F~l~~sEflLl~~Ts~ltlSIaGI~ 278 (349)
T KOG1443|consen 203 HLQPWMSIGLLPLSL---LFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLA-FLLEFSEFLLLSRTSSLTLSIAGIV 278 (349)
T ss_pred HhhhHHHHHHHHHHH---HHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHH-HHHHHHHHheeeeccceeeeHHHHH
Confidence 444 23334344323 2233222222222222222 1233344555555422 33332 445555555555
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccCCCccc
Q 029315 149 ALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYPYQVK 191 (195)
Q Consensus 149 siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~~~~~ 191 (195)
=-+.+.+++....++.++..-++|..+...++-.|..+|++-|
T Consensus 279 Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~~~~~~~ 321 (349)
T KOG1443|consen 279 KEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRNEPQNFK 321 (349)
T ss_pred HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhccCccccc
Confidence 5668899999999999999999999999999999976654433
No 30
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.18 E-value=3.3e-05 Score=56.38 Aligned_cols=128 Identities=17% Similarity=0.190 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCc--hHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHH-
Q 029315 47 IVPVLVASVLSGLASALCQWASQVKKHS--SYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFN- 123 (195)
Q Consensus 47 ~~~~l~a~~~s~~a~vy~e~~~k~~~~~--~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~- 123 (195)
++..+++++..|+..++-+--+|+.+++ ..+|+.-+..+-.... ....+++... ..+...|..+...
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~----~~~g~~~~~~------~~~~k~~lflilSG 74 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVL----LVTGNWQAGG------EIGPKSWLFLILSG 74 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHH----HhcCceeccc------ccCcceehhhhHHH
Confidence 4557788888888544444446555433 2346655433322221 1223333211 1233333332222
Q ss_pred ---HHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheec
Q 029315 124 ---SLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQ 184 (195)
Q Consensus 124 ---a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~ 184 (195)
+++-++--..+|-.+.....+....++++..++|++++||++|..+++|..++.+|..+-.
T Consensus 75 la~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 75 LAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 2234666678888999999999999999999999999999999999999999999876543
No 31
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=3.5e-05 Score=64.30 Aligned_cols=172 Identities=15% Similarity=0.109 Sum_probs=116.2
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCch---HH
Q 029315 1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSS---YL 77 (195)
Q Consensus 1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~---~~ 77 (195)
++|+|.++.-|.++....+|......+|...+ ..|....+..+++.+.-.+|.++..+..+.+- ..
T Consensus 124 f~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~-----------~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~ 192 (314)
T KOG1444|consen 124 FFGKRPSNKVWASVFAMIIGSVAAAFTDLSFN-----------LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVF 192 (314)
T ss_pred hcCcCchhhHHHHHHHHHHHHHhhccccceec-----------chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEe
Confidence 47899999999999999999988887666422 23889999999999999999999998775432 23
Q ss_pred HHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHHHHhh----HHhhhhhhcccchhhHHHHHHHHHHH
Q 029315 78 MTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLGG----ILVGLVTSHAGGVRKGFVIVSALLVT 153 (195)
Q Consensus 78 ~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~a~gg----~~v~~vlk~~~~i~k~~~~~~siv~s 153 (195)
+|= +.+..+......+++|+++. ...+-.-.....|..+....+-| .+..++.++-++..-...-..-...+
T Consensus 193 yNn---l~~L~~l~~~~~~~ge~~~l-~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t 268 (314)
T KOG1444|consen 193 YNN---LLSLPPLLILSFITGELDAL-SLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLT 268 (314)
T ss_pred ehh---HHHHHHHHHHHHHhcchHHH-HhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHH
Confidence 342 22323333333356676622 11221122234455555545544 44456666666666655555566677
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHhhhhheeccCC
Q 029315 154 AMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYP 187 (195)
Q Consensus 154 ~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~ 187 (195)
.+...+++|.+.++.-++|..+-++|-.+|+...
T Consensus 269 ~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~ 302 (314)
T KOG1444|consen 269 YLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYAT 302 (314)
T ss_pred HHHHHhcCCceechhhhHHHHHHhhhhhHHhhhh
Confidence 7777777899999999999999999987777664
No 32
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=97.89 E-value=7.8e-07 Score=72.06 Aligned_cols=176 Identities=9% Similarity=0.114 Sum_probs=124.1
Q ss_pred CCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 029315 2 CRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIE 81 (195)
Q Consensus 2 l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~ 81 (195)
||.|+...|+.++++-..|+.++-.+|..+.+ ...+.|...|..++++++.+.|...+.-|..-|+- +.....-|
T Consensus 126 LktrYrlmki~gV~iCi~GvvmvV~sDV~agd---~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~--d~~elm~~ 200 (336)
T KOG2766|consen 126 LKTRYRLMKISGVVICIVGVVMVVFSDVHAGD---RAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA--DRVELMGF 200 (336)
T ss_pred HHHHHhhheeeeEEeEecceEEEEEeeecccc---ccCCCCCccCcEEEEecceeeeeccccHHHHHhcC--cHHHHHHH
Confidence 67788889999999999999988877765421 22235678899999999999999999999999776 34445566
Q ss_pred HHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHHHH----hhHHhhhhhhcccchhhHHHHHHHHHHHHHHH
Q 029315 82 MSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSL----GGILVGLVTSHAGGVRKGFVIVSALLVTAMLQ 157 (195)
Q Consensus 82 l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~a~----gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls 157 (195)
+.++|+++..+-. +. +..++ ---.|++..... +..++ --.+...++|--++..-+.....+=.++.++
T Consensus 201 lgLfGaIIsaIQ~-i~-~~~~~----~tl~w~~~i~~y-l~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i- 272 (336)
T KOG2766|consen 201 LGLFGAIISAIQF-IF-ERHHV----STLHWDSAIFLY-LRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI- 272 (336)
T ss_pred HHHHHHHHHHHHH-hh-hccce----eeEeehHHHHHH-HHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH-
Confidence 8888887776542 21 21111 111233221111 11222 2345567778888888887777777888887
Q ss_pred HHhcCCCCchhhHHHHHHHhhhhheeccCCCccc
Q 029315 158 FIFEGKPPSLYCLIALPLVVSSISIYQKYPYQVK 191 (195)
Q Consensus 158 ~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~~~~~ 191 (195)
-.||-+.++..++....+..|..+|...+++++
T Consensus 273 -~~FgYhv~wLY~laF~~i~~GliiYs~re~~~~ 305 (336)
T KOG2766|consen 273 -RTFGYHVDWLYFLAFATIATGLIIYSTREKDEE 305 (336)
T ss_pred -HHHhcchhhhhHHHHHHHHHhhEEeeccccCcH
Confidence 678988999999999999999999987655444
No 33
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.83 E-value=2.7e-05 Score=63.71 Aligned_cols=169 Identities=11% Similarity=0.145 Sum_probs=99.5
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCC--CCCc-chhhhhHHHHHHHHHHHHHHHHHHH--HhhccCCC--
Q 029315 1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSS--GDPD-HILFYGIVPVLVASVLSGLASALCQ--WASQVKKH-- 73 (195)
Q Consensus 1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~--~~~~-~~~~~G~~~~l~a~~~s~~a~vy~e--~~~k~~~~-- 73 (195)
+||||+|+..-+..++-..||+++..++.--.++.+ +.+. .....|.++.+.+.+..+ ++|.- ++=|+-+.
T Consensus 144 ~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~aai~s~lf~a--svyIilR~iGk~~h~~m 221 (346)
T KOG4510|consen 144 FLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTVAAISSVLFGA--SVYIILRYIGKNAHAIM 221 (346)
T ss_pred HHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCchHHHHHhHhhhh--hHHHHHHHhhccccEEE
Confidence 489999999999999999999999765532111111 1110 122356666666555333 45544 33355432
Q ss_pred chHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHHHH-hhHHhhhhhhcccchhhHHHHHHHHHH
Q 029315 74 SSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSL-GGILVGLVTSHAGGVRKGFVIVSALLV 152 (195)
Q Consensus 74 ~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~a~-gg~~v~~vlk~~~~i~k~~~~~~siv~ 152 (195)
+.|-... .+.+..+++....++++- +. -|-+++....+....+ |+++...-+..=.+-..+.+++..+++
T Consensus 222 svsyf~~----i~lV~s~I~~~~ig~~~l-P~----cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvf 292 (346)
T KOG4510|consen 222 SVSYFSL----ITLVVSLIGCASIGAVQL-PH----CGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVF 292 (346)
T ss_pred EehHHHH----HHHHHHHHHHhhccceec-Cc----cccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHH
Confidence 2222221 222222222222223221 10 0222222222333333 457777777776666777888999999
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHhhhh
Q 029315 153 TAMLQFIFEGKPPSLYCLIALPLVVSSI 180 (195)
Q Consensus 153 s~lls~~lfg~~~t~~~~~G~~lV~~s~ 180 (195)
+.+..+++||+.||...++|++.|+.+.
T Consensus 293 Af~wqv~ff~~~Pt~ws~~Ga~~vvsS~ 320 (346)
T KOG4510|consen 293 AFFWQVLFFGHWPTIWSWVGAVMVVSST 320 (346)
T ss_pred HHHHHHHHhcCCChHHHhhceeeeehhH
Confidence 9999999999999999999999998885
No 34
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.75 E-value=0.0023 Score=47.15 Aligned_cols=119 Identities=10% Similarity=-0.012 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccCCC-chHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccch--hhHHHHH
Q 029315 45 YGIVPVLVASVLSGLASALCQWASQVKKH-SSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTP--LTLIPVI 121 (195)
Q Consensus 45 ~G~~~~l~a~~~s~~a~vy~e~~~k~~~~-~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~--~~~~~v~ 121 (195)
.|+++.+.+.++.+.+=+...+-.++.++ +..... + ..+.. . .++ +.+..+.
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~--~---~~~~~-~-------------------~~p~~~i~lgl~ 56 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDF--I---AALLA-F-------------------GLALRAVLLGLA 56 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHH--H---HHHHH-H-------------------hccHHHHHHHHH
Confidence 46778888888877766777666655432 111111 0 00110 0 111 3344445
Q ss_pred HHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHH--hcCCCCchhhHHHHHHHhhhhheeccCCC
Q 029315 122 FNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFI--FEGKPPSLYCLIALPLVVSSISIYQKYPY 188 (195)
Q Consensus 122 ~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~--lfg~~~t~~~~~G~~lV~~s~~ly~~~~~ 188 (195)
.-++.-.+-..++|..|........+...+...++++. +|||++|...++|.++++.|+++-++.++
T Consensus 57 ~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 57 GYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 55555567778889999988888877777778888885 89999999999999999999988776433
No 35
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.71 E-value=0.0018 Score=54.05 Aligned_cols=137 Identities=12% Similarity=0.092 Sum_probs=88.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhH--HH
Q 029315 42 ILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTL--IP 119 (195)
Q Consensus 42 ~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~--~~ 119 (195)
+...|....+++++++|..+++.+. ..+. ++......+..+ +.++........++.++..+ . ++......+ .-
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~-~~~~-~~~~~~~~R~~~-a~~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 79 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKL-IYYV-PADEILTHRVIW-SFFFMVVLMSICRQWSYLKT-L-IQTPQKIFMLAVS 79 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH-hcCC-CHHHHHHHHHHH-HHHHHHHHHHHHccHHHHHH-H-HcCHHHHHHHHHH
Confidence 4567999999999999999999954 4322 233333344333 32333222222222221110 0 111111111 11
Q ss_pred HHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhee
Q 029315 120 VIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIY 183 (195)
Q Consensus 120 v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly 183 (195)
....+.+..+....+++.+....+...+..++++.++++++++|+++...++|..+.+.|+.+-
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li 143 (296)
T PRK15430 80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQ 143 (296)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 2223344577778899999999999999999999999999999999999999999999997543
No 36
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.67 E-value=0.0011 Score=54.94 Aligned_cols=127 Identities=10% Similarity=-0.001 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhcc---CCchhhhhcccccccchhhHH--HHH
Q 029315 47 IVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKS---PDGEAIRQHGFFYGWTPLTLI--PVI 121 (195)
Q Consensus 47 ~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~---~~~~~~~~~~ff~g~~~~~~~--~v~ 121 (195)
+++.++++++.+...+...+..+++.. . + ...+..+.+......... .++++. ..+++.+. ...
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~--~-~-~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 71 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPD--F-L-WWALLAHSVLLTPYGLWYLAQVGWSRL-------PATFWLLLAISAV 71 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhH--H-H-HHHHHHHHHHHHHHHHHhcccCCCCCc-------chhhHHHHHHHHH
Confidence 456778888888888887767655422 1 1 111222322222221110 111110 11111111 122
Q ss_pred HHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheec
Q 029315 122 FNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQ 184 (195)
Q Consensus 122 ~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~ 184 (195)
.++....+....+++.|........+..++++.+++++++||+++...++|..+.+.|+.+-.
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~ 134 (281)
T TIGR03340 72 ANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLG 134 (281)
T ss_pred HHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 334455677778899999999999999999999999999999999999999999999976543
No 37
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=2.2e-05 Score=64.41 Aligned_cols=145 Identities=12% Similarity=0.066 Sum_probs=110.6
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHH
Q 029315 40 DHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIP 119 (195)
Q Consensus 40 ~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~ 119 (195)
+.-...|.+.-+.++++-++-++|+.|.+-..++.+|..++-....+.+..+....+..|.+++. +|-+-+.+..|.+
T Consensus 180 ~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~--~~~~l~a~~Fw~~ 257 (347)
T KOG1442|consen 180 GTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVV--GFPHLPAIKFWIL 257 (347)
T ss_pred CccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHc--CcccchHHHHHHH
Confidence 34456899999999999999999999888777788898777777777555444444556666543 3334455666776
Q ss_pred HHHHHHhh----HHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccC
Q 029315 120 VIFNSLGG----ILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKY 186 (195)
Q Consensus 120 v~~~a~gg----~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~ 186 (195)
.....+.| ..+.+=+|..+..+.++..+.--+.-+++++.+.+|.-+..-+-|-.+|..|...|++.
T Consensus 258 mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~v 328 (347)
T KOG1442|consen 258 MTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLV 328 (347)
T ss_pred HHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHH
Confidence 66655544 55556678888888888777777888999999999999999999999999999888864
No 38
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.63 E-value=0.0034 Score=52.57 Aligned_cols=121 Identities=12% Similarity=-0.005 Sum_probs=82.1
Q ss_pred HHHHHHHHhhccCCCc--hHH-HHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhh-HHHHHHHHHhhHHhhhhh
Q 029315 59 LASALCQWASQVKKHS--SYL-MTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLT-LIPVIFNSLGGILVGLVT 134 (195)
Q Consensus 59 ~a~vy~e~~~k~~~~~--~~~-~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~-~~~v~~~a~gg~~v~~vl 134 (195)
..++++|++.+++..+ .+. .-.|..... +.......... .+. .+... ... ......+.++..+.+..+
T Consensus 14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~-~~~~~~~~~~~-~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~al 85 (303)
T PF08449_consen 14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNA-LFSFILLSLFK-FPK-SRKIP-----LKKYAILSFLFFLASVLSNAAL 85 (303)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHH-HHHHHHHHhcc-ccC-CCcCh-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999887544 232 223322222 23322222112 010 01111 122 233566666778888999
Q ss_pred hcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccCC
Q 029315 135 SHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYP 187 (195)
Q Consensus 135 k~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~ 187 (195)
+|.+--+....-+..++.+.+++.++++++.+...+++.+++..|+.++...+
T Consensus 86 ~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~ 138 (303)
T PF08449_consen 86 KYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSD 138 (303)
T ss_pred HhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecc
Confidence 99999999999999999999999999999999999999999999998877654
No 39
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.52 E-value=0.0073 Score=49.90 Aligned_cols=162 Identities=19% Similarity=0.186 Sum_probs=88.5
Q ss_pred CCCcCcHHHHH----HHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCc-hH
Q 029315 2 CRQRQSMQQIV----AVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHS-SY 76 (195)
Q Consensus 2 l~~~ls~~qw~----al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~-~~ 76 (195)
++|--+..||. |++++.+|+.+....|.+++ +.++..+..-|+..++.+++-.....+..+ ..+-++.+ +.
T Consensus 94 fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~---~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~-~~~~~~~~~~l 169 (269)
T PF06800_consen 94 FGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSD---KSSSKSNMKKGILALLISTIGYWIYSVIPK-AFHVSGWSAFL 169 (269)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHhcccccccc---ccccccchhhHHHHHHHHHHHHHHHHHHHH-hcCCChhHhHH
Confidence 56666666665 99999999999998776543 112234555688888888886655444433 33222222 34
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccc--hhhHHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHH
Q 029315 77 LMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWT--PLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTA 154 (195)
Q Consensus 77 ~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~--~~~~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~ 154 (195)
.|.+-+.+.+.+++...- .+-.++..-.+.+.|.- .-....+....-.|..+++. .+-+++++++
T Consensus 170 PqaiGm~i~a~i~~~~~~--~~~~~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~-----------lSQ~~vvISt 236 (269)
T PF06800_consen 170 PQAIGMLIGAFIFNLFSK--KPFFEKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFT-----------LSQLGVVIST 236 (269)
T ss_pred HHHHHHHHHHHHHhhccc--ccccccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhh-----------HHhHHHHHHH
Confidence 577667666654443210 00000001112222211 11111111112223333333 4566788999
Q ss_pred HHHHHhcCCCCch----hhHHHHHHHhhhh
Q 029315 155 MLQFIFEGKPPSL----YCLIALPLVVSSI 180 (195)
Q Consensus 155 lls~~lfg~~~t~----~~~~G~~lV~~s~ 180 (195)
+-+.++++|.=+. ..++|.++++.|.
T Consensus 237 lgGI~il~E~Kt~ke~~~~~~G~~Liv~G~ 266 (269)
T PF06800_consen 237 LGGIFILKEKKTKKEMIYTLIGLILIVIGA 266 (269)
T ss_pred hhhheEEEecCchhhHHHHHHHHHHHHHhh
Confidence 9999999988764 4677888887764
No 40
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.51 E-value=0.0042 Score=50.49 Aligned_cols=134 Identities=16% Similarity=0.105 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhh-hhcccccccchhhHHH---H
Q 029315 45 YGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAI-RQHGFFYGWTPLTLIP---V 120 (195)
Q Consensus 45 ~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~-~~~~ff~g~~~~~~~~---v 120 (195)
.|..+.+++++++|..++..+. ..+- ++....-.. .+++.++.........+++.. ++.... ......... .
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~-~~~~i~~~R-~~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g 77 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPL-PATDILGHR-MIWSFPFMLLSVTLFRQWAALIERLKRI-QKRPLILSLLLCG 77 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccC-CHHHHHHHH-HHHHHHHHHHHHHHHcchHHHHHHHhCc-ccchHHHHHHHHH
Confidence 3888999999999999998886 4322 222222222 223333332222122222211 000000 011111111 1
Q ss_pred HHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhe
Q 029315 121 IFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI 182 (195)
Q Consensus 121 ~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~l 182 (195)
...+.+..+....++|.+........+..++++.++++++++|+++...++|..+.+.|+.+
T Consensus 78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~l 139 (256)
T TIGR00688 78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVIS 139 (256)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 11333446777889999999999999999999999999999999999999999999988643
No 41
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.41 E-value=0.0019 Score=46.19 Aligned_cols=59 Identities=17% Similarity=0.154 Sum_probs=50.5
Q ss_pred HhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheec
Q 029315 125 LGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQ 184 (195)
Q Consensus 125 ~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~ 184 (195)
.+-.+....++|.+. .......++++++.++++++|+|+++...++|..++..|+.+-.
T Consensus 47 ~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~ 105 (113)
T PF13536_consen 47 VAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIA 105 (113)
T ss_pred HHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 445677788899995 66688889999999999999999999999999999999975433
No 42
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.36 E-value=0.0013 Score=47.10 Aligned_cols=59 Identities=14% Similarity=0.055 Sum_probs=52.1
Q ss_pred HHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhe
Q 029315 124 SLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI 182 (195)
Q Consensus 124 a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~l 182 (195)
.....+...++|..|-.......+.+.+++.++++++|||+++...++|..+++.|+.+
T Consensus 48 ~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~ 106 (111)
T PRK15051 48 GLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVI 106 (111)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 44557777889999888888888899999999999999999999999999999999754
No 43
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.30 E-value=0.0011 Score=53.23 Aligned_cols=175 Identities=14% Similarity=0.126 Sum_probs=112.2
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC---CCchHH
Q 029315 1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVK---KHSSYL 77 (195)
Q Consensus 1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~---~~~~~~ 77 (195)
++|+|.+.....+-.+..+......++|.+...- .....-.|.+.+..-|+.++..-....+..|-. +.+...
T Consensus 115 ~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~----~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmf 190 (309)
T COG5070 115 FFGGRVTSLELLSFILMVLSSVVATWGDQQASAF----KAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMF 190 (309)
T ss_pred HhcCccchhhHHHHHHHHHHHHHhccchhhHHHH----HhcccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHH
Confidence 3688999999999999999998888888764310 011223577777777777665333333332211 112333
Q ss_pred HHHHHHHHHHHHhhh-hhhccCCchhhhhcccccccch--hhHHHHHHH-HHh-hHHhhhhhhcccchhhHHHHHHHHHH
Q 029315 78 MTIEMSIVGSLCLLA-SISKSPDGEAIRQHGFFYGWTP--LTLIPVIFN-SLG-GILVGLVTSHAGGVRKGFVIVSALLV 152 (195)
Q Consensus 78 ~n~~l~~~~~l~~~~-~~~~~~~~~~~~~~~ff~g~~~--~~~~~v~~~-a~g-g~~v~~vlk~~~~i~k~~~~~~siv~ 152 (195)
+| ...+ +|.++ .....+||++- +.-.+++. ..|..+... ++| -.+.+|++|..++..-+..-++.-..
T Consensus 191 Yn---Nlls-lPiL~~~s~~~edws~~---n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp 263 (309)
T COG5070 191 YN---NLLS-LPILLSFSFLFEDWSPG---NLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLP 263 (309)
T ss_pred Hh---hhHH-HHHHHHHHHHhccCCcc---hhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhCh
Confidence 33 2223 34333 23456788642 22234333 335444333 333 47889999999988888888887788
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHhhhhheeccC
Q 029315 153 TAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKY 186 (195)
Q Consensus 153 s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~ 186 (195)
.++.+.++||+|.+...+....+=+.+-.+|...
T Consensus 264 ~alaGlvffdap~nf~si~sillGflsg~iYava 297 (309)
T COG5070 264 IALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVA 297 (309)
T ss_pred HHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999998887776666654
No 44
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.29 E-value=0.0031 Score=45.89 Aligned_cols=70 Identities=13% Similarity=0.146 Sum_probs=53.0
Q ss_pred HHHHHHHHhhHHhhhhhhcccchhh-HHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccCC
Q 029315 118 IPVIFNSLGGILVGLVTSHAGGVRK-GFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYP 187 (195)
Q Consensus 118 ~~v~~~a~gg~~v~~vlk~~~~i~k-~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~ 187 (195)
..+..-++.-.+.+.++|+.+-... ...+.+.++.+.++++++|||+++...++|..+++.|+..-+...
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 3344445555677788888665443 334578999999999999999999999999999999986655543
No 45
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=97.28 E-value=0.00067 Score=53.39 Aligned_cols=166 Identities=14% Similarity=0.078 Sum_probs=107.4
Q ss_pred CCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHH
Q 029315 2 CRQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIE 81 (195)
Q Consensus 2 l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~ 81 (195)
||.|+...++++.++..-|++++.+.|.. ..+.++|+.+.+.++..+++.-|.+++..-+. +.--...+
T Consensus 101 L~D~~~~~kIlaailAI~GiVmiay~DN~---------~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnA--n~Gdaa~F 169 (290)
T KOG4314|consen 101 LGDRFMGFKILAAILAIGGIVMIAYADNE---------HADEIIGIACAVGSAFMAALYKVLFKMFIGNA--NFGDAAHF 169 (290)
T ss_pred hccchhhhhHHHHHHHhCcEEEEEeccch---------hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccC--cchhHHHH
Confidence 68899999999999999999998865543 24668999999999998888888777776433 32223334
Q ss_pred HHHHHHHHhhhhhhc---------cCCchhhhhcccccccchhhHHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHH
Q 029315 82 MSIVGSLCLLASISK---------SPDGEAIRQHGFFYGWTPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLV 152 (195)
Q Consensus 82 l~~~~~l~~~~~~~~---------~~~~~~~~~~~ff~g~~~~~~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~ 152 (195)
++..| .+++..... .+.++... -..|..+.-..-++.+++ +++++-+-....++.+.-+.+++..
T Consensus 170 mS~LG-F~NL~~~~~~~lIL~~T~VE~~qsFA----~~PWG~l~G~A~L~lAFN-~~iN~GiaL~~PilISiG~l~~iP~ 243 (290)
T KOG4314|consen 170 MSCLG-FFNLCFISFPALILAFTGVEHLQSFA----AAPWGCLCGAAGLSLAFN-FLINFGIALLNPILISIGMLCGIPG 243 (290)
T ss_pred HHHHH-HHHHHHHhhhHHHHHHhchHHHHHHh----hCCchhhhhHHHHHHHHh-hheeehhhhhchhhheehheecCcc
Confidence 44444 233332211 12222110 001222222222333322 3344444556677777788888889
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHhhhhheec
Q 029315 153 TAMLQFIFEGKPPSLYCLIALPLVVSSISIYQ 184 (195)
Q Consensus 153 s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~ 184 (195)
.+..+.++-+-..+..++.|.+++..|-.+--
T Consensus 244 NaaiDiL~q~l~~ntl~La~T~iI~i~FiLii 275 (290)
T KOG4314|consen 244 NAAIDILFQELEFNTLFLAATCIICIGFILII 275 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhee
Confidence 99999998888899999999999999854433
No 46
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.26 E-value=0.0029 Score=53.17 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=83.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCc-hHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHH
Q 029315 41 HILFYGIVPVLVASVLSGLASALCQWASQVKKHS-SYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIP 119 (195)
Q Consensus 41 ~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~-~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~ 119 (195)
.+..+|+.+.+.++++.+.+-.+++|..+|.++. ..... . + .... -++.+|.=
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~-~----~--~~~l-------------------~~~~W~~G 56 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGS-G----G--RSYL-------------------RRPLWWIG 56 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-h----h--hHHH-------------------hhHHHHHH
Confidence 4678999999999999999999999887766431 10000 0 0 0000 01122322
Q ss_pred HHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhe
Q 029315 120 VIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI 182 (195)
Q Consensus 120 v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~l 182 (195)
....++|-++--..+.+++..+..+..+++++++.+++.++.+|+++...++|..+++.|+.+
T Consensus 57 ~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~l 119 (300)
T PF05653_consen 57 LLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVL 119 (300)
T ss_pred HHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhhee
Confidence 333445545555778889999999999999999999999999999999999999999998643
No 47
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.08 E-value=0.006 Score=43.72 Aligned_cols=68 Identities=12% Similarity=0.124 Sum_probs=50.3
Q ss_pred HHHHHHhhHHhhhhhhcccchhh-HHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccCC
Q 029315 120 VIFNSLGGILVGLVTSHAGGVRK-GFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYP 187 (195)
Q Consensus 120 v~~~a~gg~~v~~vlk~~~~i~k-~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~ 187 (195)
+..-++.-.+.+..+|..+-... ...+.+..+.+.+.++++|||+++...++|+.+++.|+..-+...
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33334444556677777654433 224567999999999999999999999999999999986655543
No 48
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=96.81 E-value=0.045 Score=45.58 Aligned_cols=124 Identities=14% Similarity=0.072 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhh-hccCCchhhhhcccccccchhhHH-HHHHHHHhhHHh
Q 029315 53 ASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASI-SKSPDGEAIRQHGFFYGWTPLTLI-PVIFNSLGGILV 130 (195)
Q Consensus 53 a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~-~~~~~~~~~~~~~ff~g~~~~~~~-~v~~~a~gg~~v 130 (195)
.+...++ ..|++..+++...+...-..|+.... +...+.. ....+.++. ..-++..+. .-+.++..-.+.
T Consensus 11 ~~~~~~~-~~~NK~~l~~~~~P~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~ 82 (302)
T TIGR00817 11 YFLNVYF-NIYNKKLLNVFPYPYFKTLISLAVGS-LYCLLSWSSGLPKRLKI------SSALLKLLLPVAIVHTIGHVTS 82 (302)
T ss_pred HHHHHHH-HHHHHHHHhhCChhHHHHHHHHHHHH-HHHHHHHHhCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 58888888764445555555544433 2222211 001111111 111111222 123344555677
Q ss_pred hhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheec
Q 029315 131 GLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQ 184 (195)
Q Consensus 131 ~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~ 184 (195)
+..++|.+....+...+..++++.++++++++|+++...++|..+.+.|+.+..
T Consensus 83 ~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 83 NVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 889999999999999999999999999999999999999999999999986643
No 49
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=96.74 E-value=0.077 Score=45.47 Aligned_cols=128 Identities=11% Similarity=-0.001 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccc-cccchhhH-HHHHHHHHhhHH
Q 029315 52 VASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFF-YGWTPLTL-IPVIFNSLGGIL 129 (195)
Q Consensus 52 ~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff-~g~~~~~~-~~v~~~a~gg~~ 129 (195)
.-=.+|.....++..++++-+-+...-.+|+.+.+.. ..+.... +..+. ..+. ....+... ..-+++..+...
T Consensus 56 ~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~-~~~~~~~--~~~~~--~~~~~~~~~~~~llp~gl~~~~~~~~ 130 (350)
T PTZ00343 56 TWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLF-ALLYWAT--GFRKI--PRIKSLKLFLKNFLPQGLCHLFVHFG 130 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH-HHHHHHh--CCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455557788888877643666677776655432 2221111 11100 0010 00011111 122333333344
Q ss_pred hhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheec
Q 029315 130 VGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQ 184 (195)
Q Consensus 130 v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~ 184 (195)
....+++.+........+.+++++.++++++++|+++...++|.+++++|+.+-.
T Consensus 131 ~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 131 AVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 4577889999999999999999999999999999999999999999999987654
No 50
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=96.67 E-value=0.062 Score=44.80 Aligned_cols=130 Identities=15% Similarity=0.068 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHH--HH
Q 029315 46 GIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVI--FN 123 (195)
Q Consensus 46 G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~--~~ 123 (195)
|+++++++++++|..++..++.. +. ++.|. +.+.+.+ ++.........+. .++......+..+. .-
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~-~~~~~--~~~~~g~-l~~~~~~~~~~~~-------~~~~~~~~~~g~l~G~~w 69 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GG-PYSQT--LGTTFGA-LILSIAIAIFVLP-------EFWALSIFLVGLLSGAFW 69 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CC-HHHHH--HHHHHHH-HHHHHHHHHHhCC-------cccccHHHHHHHHHHHHH
Confidence 67889999999999999998765 21 22222 2333233 3322222111110 01111111111111 12
Q ss_pred HHhhHHhhhhhhcccchhhHHHHH-HHHHHHHHHHHHhcCCCCchhh----HHHHHHHhhhhheeccCC
Q 029315 124 SLGGILVGLVTSHAGGVRKGFVIV-SALLVTAMLQFIFEGKPPSLYC----LIALPLVVSSISIYQKYP 187 (195)
Q Consensus 124 a~gg~~v~~vlk~~~~i~k~~~~~-~siv~s~lls~~lfg~~~t~~~----~~G~~lV~~s~~ly~~~~ 187 (195)
+.|.+..-..+|+.+..+.-...+ ..++++.+.+.++|||.++... ++|.++++.|+++....+
T Consensus 70 ~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 70 ALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred HhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 334455556677766555544434 7888999999999999999999 999999999998876653
No 51
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.61 E-value=0.31 Score=40.04 Aligned_cols=164 Identities=18% Similarity=0.112 Sum_probs=92.1
Q ss_pred CCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Q 029315 3 RQRQSMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEM 82 (195)
Q Consensus 3 ~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l 82 (195)
.||..-.-|+++.++=.+..+....+.+ .-...|....+.+..+++..=+.-+|.=+.. +..--...-|
T Consensus 116 sRr~~d~vwvaLAvlGi~lL~p~~~~~~----------~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~-~g~~g~a~gm 184 (292)
T COG5006 116 SRRLRDFVWVALAVLGIWLLLPLGQSVW----------SLDPVGVALALGAGACWALYIVLGQRAGRAE-HGTAGVAVGM 184 (292)
T ss_pred ccchhhHHHHHHHHHHHHhheeccCCcC----------cCCHHHHHHHHHHhHHHHHHHHHcchhcccC-CCchHHHHHH
Confidence 4666666677776654443332221111 2224899999999999987544444554222 1222222223
Q ss_pred HHHHHHHhhhhhhccCCchhhhhcccccccchhhHHH-----HHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHH
Q 029315 83 SIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIP-----VIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQ 157 (195)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~-----v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls 157 (195)
.... +..+.... ...+. .+ +++..... ++..++-..+=-..++....-.-+...++++.+.++.+
T Consensus 185 ~vAa-viv~Pig~-~~ag~-----~l---~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G 254 (292)
T COG5006 185 LVAA-LIVLPIGA-AQAGP-----AL---FSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSG 254 (292)
T ss_pred HHHH-HHHhhhhh-hhcch-----hh---cChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHH
Confidence 2222 22222211 11111 11 12211111 11122223444456677777777788899999999999
Q ss_pred HHhcCCCCchhhHHHHHHHhhhhheeccCC
Q 029315 158 FIFEGKPPSLYCLIALPLVVSSISIYQKYP 187 (195)
Q Consensus 158 ~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~ 187 (195)
+++.||.+|..++++...|+.++-=-+...
T Consensus 255 ~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~ 284 (292)
T COG5006 255 LIFLGETLTLIQWLAIAAVIAASAGSTLTA 284 (292)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999988875444333
No 52
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=96.59 E-value=0.046 Score=44.13 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=54.2
Q ss_pred HHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheecc
Q 029315 123 NSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQK 185 (195)
Q Consensus 123 ~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~ 185 (195)
..+.-.+....++|.+....+......++++.++++++++|+++...++|..+.+.|+.+...
T Consensus 57 ~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 57 IGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 344446666788999998899999999999999999999999999999999999999766543
No 53
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.35 E-value=0.03 Score=39.72 Aligned_cols=62 Identities=18% Similarity=0.120 Sum_probs=49.4
Q ss_pred HHHHHhhHHhhhhhhcccchh-hHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhe
Q 029315 121 IFNSLGGILVGLVTSHAGGVR-KGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI 182 (195)
Q Consensus 121 ~~~a~gg~~v~~vlk~~~~i~-k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~l 182 (195)
..-...-.+.+..+|+.+-.+ -...+...++.+.+.++++|||+++...++|..+++.|+..
T Consensus 38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~ 100 (106)
T COG2076 38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIG 100 (106)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHH
Confidence 333444466778888866443 34578889999999999999999999999999999999754
No 54
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.17 E-value=0.005 Score=51.78 Aligned_cols=61 Identities=7% Similarity=-0.062 Sum_probs=41.7
Q ss_pred HHhhhhhhcccchhhHHHHHHHHHH-HHHHHHHhcCC--CCch----hhHHHHHHHhhhhheeccCCC
Q 029315 128 ILVGLVTSHAGGVRKGFVIVSALLV-TAMLQFIFEGK--PPSL----YCLIALPLVVSSISIYQKYPY 188 (195)
Q Consensus 128 ~~v~~vlk~~~~i~k~~~~~~siv~-s~lls~~lfg~--~~t~----~~~~G~~lV~~s~~ly~~~~~ 188 (195)
...+..+++.|+....+...+.-.. +.+-|.++|+| ..+. .++.|..+++.|+++=+...+
T Consensus 228 ~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~ 295 (300)
T PF05653_consen 228 YYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKD 295 (300)
T ss_pred HHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCc
Confidence 6677888898988877755554444 44445567774 3333 678889999999988766543
No 55
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=96.15 E-value=0.24 Score=41.13 Aligned_cols=129 Identities=11% Similarity=0.084 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHH--HHH
Q 029315 46 GIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPV--IFN 123 (195)
Q Consensus 46 G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v--~~~ 123 (195)
=+++.++..+++|...+.....+.+- ++.....+...+.+ +........ +... ....-++...... +..
T Consensus 9 ~~~~~~~~~~iWg~~~~~~K~~~~~~-~p~~~~~~R~~~a~-l~ll~~~~~-~~~~------~~~~~~~~~~~~~g~~~~ 79 (292)
T PRK11272 9 LFGALFALYIIWGSTYLVIRIGVESW-PPLMMAGVRFLIAG-ILLLAFLLL-RGHP------LPTLRQWLNAALIGLLLL 79 (292)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhccC-CHHHHHHHHHHHHH-HHHHHHHHH-hCCC------CCcHHHHHHHHHHHHHHH
Confidence 35667888999999888888777532 34444444444444 232222211 1110 0001111111111 112
Q ss_pred HHhhHHhhhhh-hcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheec
Q 029315 124 SLGGILVGLVT-SHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQ 184 (195)
Q Consensus 124 a~gg~~v~~vl-k~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~ 184 (195)
+.+..+..... ++.++...+...+..++++.+++++ ++|+++...++|..+.+.|+.+-.
T Consensus 80 ~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~ 140 (292)
T PRK11272 80 AVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN 140 (292)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh
Confidence 22333444455 7888777888899999999999985 799999999999999999976554
No 56
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.11 E-value=0.026 Score=40.62 Aligned_cols=66 Identities=18% Similarity=0.282 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhHHhhhhhhcccchhhHHH-HHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhe
Q 029315 117 LIPVIFNSLGGILVGLVTSHAGGVRKGFV-IVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI 182 (195)
Q Consensus 117 ~~~v~~~a~gg~~v~~vlk~~~~i~k~~~-~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~l 182 (195)
++....|-.|-+..-+.+..+|-.+..+. ++++.++|.+.++++.++..+...++|+.+|+.|+.+
T Consensus 45 ~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 45 IIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 45677777888888888999998888875 6999999999999999999999999999999999764
No 57
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.08 E-value=0.062 Score=38.43 Aligned_cols=63 Identities=10% Similarity=-0.056 Sum_probs=49.0
Q ss_pred HHHHHHhhHHhhhhhhcccchh-hHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhe
Q 029315 120 VIFNSLGGILVGLVTSHAGGVR-KGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI 182 (195)
Q Consensus 120 v~~~a~gg~~v~~vlk~~~~i~-k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~l 182 (195)
+..-++.-.+.+..+|+.+-.. -...+....+.+.+.++++|||+++...++|..+++.|+..
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~ 105 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVM 105 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 3334445567778888765433 34466788899999999999999999999999999998754
No 58
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=96.05 E-value=0.38 Score=40.05 Aligned_cols=122 Identities=13% Similarity=0.076 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHH-HHHHHh
Q 029315 48 VPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPV-IFNSLG 126 (195)
Q Consensus 48 ~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v-~~~a~g 126 (195)
++.+++++++|...+..+..+.+- ++.+...+...+.+ ++.+... ..... ++...... .....+
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~~-~p~~~~~~R~~~a~-~~l~~~~--~~~~~-----------~~~~~~~~g~~~~~~ 71 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHNM-PPLMLAGLRFMLVA-FPAIFFV--ARPKV-----------PLNLLLGYGLTISFG 71 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHH-HHHHHHh--cCCCC-----------chHHHHHHHHHHHHH
Confidence 457888999999999888777432 34444443433323 2322211 11111 01111111 111111
Q ss_pred h-HHhhhhhhc-ccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheec
Q 029315 127 G-ILVGLVTSH-AGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQ 184 (195)
Q Consensus 127 g-~~v~~vlk~-~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~ 184 (195)
. .+.-..++| .++.......+..++++.++++++++|+++...++|..+.+.|+.+-.
T Consensus 72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~ 131 (299)
T PRK11453 72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI 131 (299)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence 1 222234566 466677777889999999999999999999999999999999975443
No 59
>PRK11689 aromatic amino acid exporter; Provisional
Probab=95.91 E-value=0.41 Score=39.80 Aligned_cols=127 Identities=17% Similarity=0.135 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHH-HHH
Q 029315 46 GIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVI-FNS 124 (195)
Q Consensus 46 G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~-~~a 124 (195)
++++.+++++++|..-+..+...++- ++.+.-.+-+...+ ++..... ...+.+ ...+....... ...
T Consensus 5 ~~l~~l~a~~~Wg~~~~~~k~~~~~~-~P~~~~~~R~~~a~-l~l~~~~----~~~~~~------~~~~~~~~~~~l~~~ 72 (295)
T PRK11689 5 ATLIGLIAILLWSTMVGLIRGVSESL-GPVGGAAMIYSVSG-LLLLLTV----GFPRLR------QFPKRYLLAGGLLFV 72 (295)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHccC-ChHHHHHHHHHHHH-HHHHHHc----cccccc------cccHHHHHHHhHHHH
Confidence 46678889999999878888777544 34444333333333 3332211 111101 01111111111 111
Q ss_pred HhhHHhhhhh----hcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheec
Q 029315 125 LGGILVGLVT----SHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQ 184 (195)
Q Consensus 125 ~gg~~v~~vl----k~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~ 184 (195)
....+....+ ++.++...+...+..++++.++++++++|+++...++|..+.++|+.+-.
T Consensus 73 ~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~ 136 (295)
T PRK11689 73 SYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVL 136 (295)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhee
Confidence 1122222233 34567777888899999999999999999999999999999999975544
No 60
>PRK11431 multidrug efflux system protein; Provisional
Probab=95.86 E-value=0.1 Score=37.09 Aligned_cols=64 Identities=16% Similarity=0.071 Sum_probs=49.6
Q ss_pred HHHHHHhhHHhhhhhhcccc-hhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhee
Q 029315 120 VIFNSLGGILVGLVTSHAGG-VRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIY 183 (195)
Q Consensus 120 v~~~a~gg~~v~~vlk~~~~-i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly 183 (195)
+..-++.-.+.+..+|..+- +.-...+...++.+.+.++++|||+++...++|..+++.|+..-
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 33334455667777877554 33445678899999999999999999999999999999997543
No 61
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=95.76 E-value=0.83 Score=36.87 Aligned_cols=140 Identities=17% Similarity=0.187 Sum_probs=83.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHH
Q 029315 43 LFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIF 122 (195)
Q Consensus 43 ~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~ 122 (195)
...+....+..++.++......+...++. .+.......-...+... ..... ..+.. .......++-+........
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~ 79 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESL-DPFLFAAALRFLIAALL-LLPLL-LLEPR--GLRPALRPWLLLLLLALLG 79 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-CChHHHHHHHHHHHHHH-HHHHH-Hhhcc--cccccccchHHHHHHHHHH
Confidence 34667777778888888888877777552 23222222112222222 11111 01100 0000000111112222333
Q ss_pred HHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHH-HhcCCCCchhhHHHHHHHhhhhheeccCC
Q 029315 123 NSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQF-IFEGKPPSLYCLIALPLVVSSISIYQKYP 187 (195)
Q Consensus 123 ~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~-~lfg~~~t~~~~~G~~lV~~s~~ly~~~~ 187 (195)
...+..+....+++.+........+.+++++.++++ ++++|+++...+.|..+.+.|+.+-....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~ 145 (292)
T COG0697 80 LALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGG 145 (292)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCC
Confidence 344446666668888888888899999999999997 66799999999999999899987776644
No 62
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=95.46 E-value=0.51 Score=40.71 Aligned_cols=55 Identities=13% Similarity=0.012 Sum_probs=49.8
Q ss_pred HHhhhhhhcccchhhHHHHHHHHHHHHHHHHHh------cCCCCchhhHHHHHHHhhhhhe
Q 029315 128 ILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIF------EGKPPSLYCLIALPLVVSSISI 182 (195)
Q Consensus 128 ~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~l------fg~~~t~~~~~G~~lV~~s~~l 182 (195)
.+...-++|.++...+...+..++++.++++++ ++|+++...++|..+-+.|+.+
T Consensus 93 ~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~l 153 (358)
T PLN00411 93 ITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALV 153 (358)
T ss_pred HHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHH
Confidence 356678899999999999999999999999999 6999999999999999888643
No 63
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.44 E-value=0.066 Score=36.99 Aligned_cols=56 Identities=13% Similarity=0.039 Sum_probs=31.5
Q ss_pred HHHHHhhHHhhhhhhcccchhhHH-HHHHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 029315 121 IFNSLGGILVGLVTSHAGGVRKGF-VIVSALLVTAMLQFIFEGKPPSLYCLIALPLV 176 (195)
Q Consensus 121 ~~~a~gg~~v~~vlk~~~~i~k~~-~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV 176 (195)
....+.-.+.+..+|+.|-...-. .+....+.+.+++.++|||++|...++|..++
T Consensus 37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 334444477788888877666633 56789999999999999999999999999875
No 64
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=95.06 E-value=0.82 Score=39.10 Aligned_cols=59 Identities=14% Similarity=0.238 Sum_probs=51.5
Q ss_pred hhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheec
Q 029315 126 GGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQ 184 (195)
Q Consensus 126 gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~ 184 (195)
+=.++...++|.+-.......+.+++++.++|+++++++.++..++|..+++.|+-+-.
T Consensus 92 aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~ 150 (334)
T PF06027_consen 92 ANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVV 150 (334)
T ss_pred HHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhee
Confidence 44666688889888888889999999999999999999999999999999999965433
No 65
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=94.12 E-value=0.36 Score=39.36 Aligned_cols=67 Identities=18% Similarity=0.128 Sum_probs=57.0
Q ss_pred HHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccCC
Q 029315 121 IFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYP 187 (195)
Q Consensus 121 ~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~ 187 (195)
+.-++.-.+.-..+++.|..+-....-..++.|+++++++++.+++..++++..+..+|+.+.+..+
T Consensus 25 ~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~ 91 (244)
T PF04142_consen 25 LLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSS 91 (244)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCC
Confidence 3344444555578899999998889999999999999999999999999999999999988777654
No 66
>PRK13499 rhamnose-proton symporter; Provisional
Probab=93.95 E-value=0.96 Score=38.86 Aligned_cols=135 Identities=21% Similarity=0.222 Sum_probs=78.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhccCC-CchHHHHHHHHHHHHH--HhhhhhhccCCchhhhhcccccccchhhHH
Q 029315 42 ILFYGIVPVLVASVLSGLASALCQWASQVKK-HSSYLMTIEMSIVGSL--CLLASISKSPDGEAIRQHGFFYGWTPLTLI 118 (195)
Q Consensus 42 ~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~-~~~~~~n~~l~~~~~l--~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~ 118 (195)
+...|++..+++++++|--.+=++| .|+-+ ++.|. .+-. +..+ +........++..+. ++..++..+.
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~wE~~W~--v~gi-~~wl~~~~~~g~~~~~~f~~~-----~~~~~~~~~~ 74 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWSWETMWS--VGGI-FSWLILPWLIAALLLPDFWAY-----YSSFSGSTLL 74 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCCchhHHHH--HHHH-HHHHHHHHHHHHHHhhhHHHH-----HHhcCHHHHH
Confidence 5678999999999999875555444 44443 23333 1111 1111 111122222222211 1223444443
Q ss_pred HHHH----HHHhhHHhhhhhhcccchhhH-HHHHHHHHHHHHHHHHhcCCCC-------chhhHHHHHHHhhhhheecc
Q 029315 119 PVIF----NSLGGILVGLVTSHAGGVRKG-FVIVSALLVTAMLQFIFEGKPP-------SLYCLIALPLVVSSISIYQK 185 (195)
Q Consensus 119 ~v~~----~a~gg~~v~~vlk~~~~i~k~-~~~~~siv~s~lls~~lfg~~~-------t~~~~~G~~lV~~s~~ly~~ 185 (195)
..+. =++|++.....+||.+-.+.- .++.+.+++++++..++|||=. ....++|.++++.|+.+-.+
T Consensus 75 ~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 75 PVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3222 244778888889997765544 4778888999999999997422 24567888888888766554
No 67
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=93.64 E-value=1.7 Score=36.30 Aligned_cols=128 Identities=20% Similarity=0.138 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccCCCch-HHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHH
Q 029315 45 YGIVPVLVASVLSGLASALCQWASQVKKHSS-YLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFN 123 (195)
Q Consensus 45 ~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~-~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~ 123 (195)
-|++..+.+.+++|+.-.|...+-.-....+ ..|-+. +..+..+.....+++++..+ ..-++..+......
T Consensus 7 ~Gil~~l~Ay~lwG~lp~y~kll~~~~~~eIlahRviw----S~~~~l~ll~~~r~~~~~~~----~~~~p~~~~~~~l~ 78 (293)
T COG2962 7 KGILLALLAYLLWGLLPLYFKLLEPLPATEILAHRVIW----SFPFMLALLFLLRQWRELKQ----LLKQPKTLLMLALT 78 (293)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH----HHHHHHHHHHHHhhhHHHHH----HHhCcHHHHHHHHH
Confidence 5999999999999997777766543332222 223322 32222222223345444322 12233334333222
Q ss_pred HH--hh--HHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhh
Q 029315 124 SL--GG--ILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSI 180 (195)
Q Consensus 124 a~--gg--~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~ 180 (195)
+. ++ .+.-+.+.....+-.+.-=..-+.++.+++.++++|+++..+++...+-.+|+
T Consensus 79 a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV 139 (293)
T COG2962 79 ALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGV 139 (293)
T ss_pred HHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 22 21 33335555555556666667888999999999999999999999998887775
No 68
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.57 E-value=0.053 Score=45.71 Aligned_cols=79 Identities=16% Similarity=0.120 Sum_probs=64.2
Q ss_pred chhhHHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhh-eeccCCCccc
Q 029315 113 TPLTLIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSIS-IYQKYPYQVK 191 (195)
Q Consensus 113 ~~~~~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~-ly~~~~~~~~ 191 (195)
.+++|.=++.-.+|-+.--...-++..++..+..+++++.+++++..+.+|.++..-.+|..+.+.|.+ +....|++++
T Consensus 64 ~~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~ 143 (335)
T KOG2922|consen 64 EPLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQE 143 (335)
T ss_pred hHHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccc
Confidence 355566667777776666678889999999999999999999999999999999999999999998864 4444454433
No 69
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=93.09 E-value=2.7 Score=31.14 Aligned_cols=131 Identities=14% Similarity=0.166 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHHHHh
Q 029315 47 IVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNSLG 126 (195)
Q Consensus 47 ~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~a~g 126 (195)
.++.+++-.+.++.+..+-+.-|+.+ +.+.-+..-+..|.+...+.....++. +. .-..+.+++.|.-=...+..
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~-~~---~~~~~~p~w~~lGG~lG~~~ 77 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRP-SL---ASLSSVPWWAYLGGLLGVFF 77 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhccc-cc---chhccCChHHhccHHHHHHH
Confidence 34566666777777888888877665 345545444555654444433333332 11 11223444444322222222
Q ss_pred hHHhhhhhhcccchh-hHHHHHHHHHHHHHHHHH-hc---CCCCchhhHHHHHHHhhhhhe
Q 029315 127 GILVGLVTSHAGGVR-KGFVIVSALLVTAMLQFI-FE---GKPPSLYCLIALPLVVSSISI 182 (195)
Q Consensus 127 g~~v~~vlk~~~~i~-k~~~~~~siv~s~lls~~-lf---g~~~t~~~~~G~~lV~~s~~l 182 (195)
-.+....++..+... ........++.+.+++.+ +| ..+++...++|..+++.|+++
T Consensus 78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 233334444433333 333455566677777775 33 489999999999999998764
No 70
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=92.30 E-value=0.22 Score=36.26 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=26.5
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhcCCCC
Q 029315 1 MCRQRQSMQQIVAVFLLILAAVFLSIGEGS 30 (195)
Q Consensus 1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~~~ 30 (195)
++||++|..||.++.++++|++.+...+.+
T Consensus 78 ~f~E~~s~~~~~gi~lIi~GVi~l~l~~~~ 107 (120)
T PRK10452 78 LFDESLSLMKIAGLTTLVAGIVLIKSGTRK 107 (120)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHhhcCCCC
Confidence 379999999999999999999999876643
No 71
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=88.92 E-value=0.74 Score=32.67 Aligned_cols=66 Identities=21% Similarity=0.189 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhHHhhhhhhcccchhhH-HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhe
Q 029315 117 LIPVIFNSLGGILVGLVTSHAGGVRKG-FVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI 182 (195)
Q Consensus 117 ~~~v~~~a~gg~~v~~vlk~~~~i~k~-~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~l 182 (195)
|+..+.|-+|-.+.-+.+.+++-.... +.++++..++.+.+..+-.+.+....++|+.++++|+++
T Consensus 56 ~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 56 LIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred HHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhh
Confidence 566777777766666777776655443 478889999999999998899999999999999999875
No 72
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=88.66 E-value=3 Score=32.97 Aligned_cols=73 Identities=19% Similarity=0.164 Sum_probs=52.2
Q ss_pred CCCcCcHHHHHHHHHHHHHHHHHhcCCCCCC-----------CCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 029315 2 CRQRQSMQQIVAVFLLILAAVFLSIGEGSSK-----------RSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQV 70 (195)
Q Consensus 2 l~~~ls~~qw~al~ll~~Gv~~~~~~~~~~~-----------~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~ 70 (195)
.+||++..|+.+..+++.|++...+++.+.. .+.++..++.+..|.....+.+++.+...-+.+..+++
T Consensus 26 ~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~~~~g~~~~l~a~~~~~~~~~y~e 105 (222)
T TIGR00803 26 AGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNPVVGLSAVLSALLSSGFAGVYFE 105 (222)
T ss_pred cceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 5899999999999999999998777554321 00111222345568888888888888888888888887
Q ss_pred CCCc
Q 029315 71 KKHS 74 (195)
Q Consensus 71 ~~~~ 74 (195)
+..+
T Consensus 106 ~~~k 109 (222)
T TIGR00803 106 KILK 109 (222)
T ss_pred Hccc
Confidence 7543
No 73
>PRK13499 rhamnose-proton symporter; Provisional
Probab=88.56 E-value=15 Score=31.62 Aligned_cols=56 Identities=11% Similarity=0.164 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHhc----CCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 029315 8 MQQIVAVFLLILAAVFLSI----GEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQ 65 (195)
Q Consensus 8 ~~qw~al~ll~~Gv~~~~~----~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e 65 (195)
..-..++++..+|+++... .+.+.+ .++..+.+.--|+..++++.+.++......+
T Consensus 135 ~~~~~gv~liliGi~l~s~Ag~~k~~~~~--~~~~~~~~~~KGi~ialisgi~~~~f~~~~~ 194 (345)
T PRK13499 135 RMTLLGVLVALIGVAIVGRAGQLKERKMG--IKKAEEFNLKKGLILAVMSGIFSACFSFAMD 194 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccc--cccccccchHhHHHHHHHHHHHHHHHHHHHh
Confidence 4456788999999999987 433221 1112345777899999999998888773333
No 74
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.41 E-value=17 Score=30.84 Aligned_cols=136 Identities=13% Similarity=-0.014 Sum_probs=85.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHH--HHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHH
Q 029315 42 ILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYL--MTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIP 119 (195)
Q Consensus 42 ~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~--~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~ 119 (195)
...-.+..++..|++|.+..+.+..++.+++-|-.. .-.|.-... +...+.-. ..+.+...++--....|.+
T Consensus 9 ~~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~-~~v~~lk~-----~~lv~~~~l~~~~~kk~~P 82 (314)
T KOG1444|consen 9 KQSSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASV-LVVLVLKR-----LGLVNFRPLDLRTAKKWFP 82 (314)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH-HHHHHHHH-----hceeecCCcChHHHHHHcc
Confidence 334567888999999999999999999888654333 235532222 22222110 0001111111111223332
Q ss_pred H----HHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccC
Q 029315 120 V----IFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKY 186 (195)
Q Consensus 120 v----~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~ 186 (195)
+ ..+...|. ..+||.+--+-...--.+++++++.+.++||..++...+.......++...+...
T Consensus 83 ~~~lf~~~i~t~~---~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~ 150 (314)
T KOG1444|consen 83 VSLLFVGMLFTGS---KSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFT 150 (314)
T ss_pred HHHHHHHHHHHcc---ccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccc
Confidence 2 22233344 6788888777777788899999999999999999999999998888887766543
No 75
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=83.36 E-value=9.8 Score=32.64 Aligned_cols=139 Identities=19% Similarity=0.217 Sum_probs=78.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhccCC-CchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHH
Q 029315 41 HILFYGIVPVLVASVLSGLASALCQWASQVKK-HSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIP 119 (195)
Q Consensus 41 ~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~-~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~ 119 (195)
.+.+.|++...++++++|...+=.+|+ |+-+ ++.|...-..+. -.+|........+|..++.+ ..+..++..
T Consensus 3 ~~ii~Gii~h~iGg~~~~sfy~P~kkv-k~WsWEs~Wlv~gi~sw-li~P~~~a~l~ip~~~~i~~-----~~~~~~l~~ 75 (344)
T PF06379_consen 3 SAIILGIIFHAIGGFASGSFYVPFKKV-KGWSWESYWLVQGIFSW-LIVPWLWALLAIPDFFSIYS-----ATPASTLFW 75 (344)
T ss_pred chHHHHHHHHHHHHHHhhhhccchhhc-CCccHHHHHHHHHHHHH-HHHHHHHHHHhCCcHHHHHH-----hCChhHHHH
Confidence 356789999999999888755443333 2221 233432211121 22344333334556544332 222222222
Q ss_pred -HHHH---HHhhHHhhhhhhcccchh-hHHHHHHHHHHHHHHHHHhcC-------CCCchhhHHHHHHHhhhhheeccC
Q 029315 120 -VIFN---SLGGILVGLVTSHAGGVR-KGFVIVSALLVTAMLQFIFEG-------KPPSLYCLIALPLVVSSISIYQKY 186 (195)
Q Consensus 120 -v~~~---a~gg~~v~~vlk~~~~i~-k~~~~~~siv~s~lls~~lfg-------~~~t~~~~~G~~lV~~s~~ly~~~ 186 (195)
.+.. .+||+..+..+||.+-.+ -+++.-+..++.+++..++.| .+-....++|.++++.++.+-.+.
T Consensus 76 ~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 76 TFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA 154 (344)
T ss_pred HHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence 2233 348999999999976443 344555566666666555533 333457888999998888776654
No 76
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=82.25 E-value=17 Score=30.12 Aligned_cols=66 Identities=15% Similarity=0.075 Sum_probs=45.6
Q ss_pred HHhhHHhhhhhhcccchhhHH-HHHHHHHHHHHHHHHhcCCCCchhhH----HHHHHHhhhhheeccCCCc
Q 029315 124 SLGGILVGLVTSHAGGVRKGF-VIVSALLVTAMLQFIFEGKPPSLYCL----IALPLVVSSISIYQKYPYQ 189 (195)
Q Consensus 124 a~gg~~v~~vlk~~~~i~k~~-~~~~siv~s~lls~~lfg~~~t~~~~----~G~~lV~~s~~ly~~~~~~ 189 (195)
++|.+.--..+|+.+-.+.-+ .+...++.+.+.++++|||-.+.... ++.++++.|+++-+..+++
T Consensus 56 ~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~ 126 (269)
T PF06800_consen 56 AIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKK 126 (269)
T ss_pred HHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccc
Confidence 335555556667766655544 67889999999999999987765443 3667778887766655433
No 77
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=79.63 E-value=1.5 Score=36.44 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=41.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccCC
Q 029315 136 HAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYP 187 (195)
Q Consensus 136 ~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~ 187 (195)
.+|+.+.. ..+++++.+++|.+++|+.|..-.+|..+.+.|+.+-.++|
T Consensus 123 laDA~vIt---FssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 123 LADAVVIT---FSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred hhheEEEE---ecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 36776654 56789999999999999999999999999999987777654
No 78
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=78.80 E-value=18 Score=30.63 Aligned_cols=71 Identities=11% Similarity=0.114 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccCC
Q 029315 117 LIPVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYP 187 (195)
Q Consensus 117 ~~~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~ 187 (195)
+.+-..|.+++.+=-..+||.|=-+...+-++=++-..+...++.+.+.+....+-+.+|-.|+-++...|
T Consensus 87 ~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~ 157 (327)
T KOG1581|consen 87 SLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFP 157 (327)
T ss_pred hHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEec
Confidence 45567778877777799999999999999999999999999999999999999999999988876665554
No 79
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=77.74 E-value=5.4 Score=28.24 Aligned_cols=42 Identities=21% Similarity=0.240 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhe
Q 029315 141 RKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI 182 (195)
Q Consensus 141 ~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~l 182 (195)
+|..-...++.+=+.+|+++++|+++++.+.|...+..++|.
T Consensus 64 LKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 64 LKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 344455555566677888899999999999999999988764
No 80
>COG4665 FcbT2 TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.00 E-value=25 Score=27.12 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhh
Q 029315 51 LVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLT 116 (195)
Q Consensus 51 l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~ 116 (195)
+++++.|+ ..+...+.+ ...|.+..+.|=|++++++.+.......++++++-+=+...++..+
T Consensus 27 l~~vl~~~-~nvv~Ry~~--N~sSna~lEaqWyLF~~vFllaaaYtL~~neHVRvDi~Y~~ls~R~ 89 (182)
T COG4665 27 LVAVLVSA-GNVVMRYAF--NMSSNAWLEAQWYLFGAVFLLAAAYTLKQNEHVRVDIIYGSLSRRT 89 (182)
T ss_pred HHHHHHHH-HHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEeeccccCHHH
Confidence 34444443 355555664 3356788889999999888877666666777766555555666554
No 81
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=60.80 E-value=75 Score=26.90 Aligned_cols=64 Identities=9% Similarity=0.146 Sum_probs=44.4
Q ss_pred HHHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhe
Q 029315 119 PVIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI 182 (195)
Q Consensus 119 ~v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~l 182 (195)
..++-.+|-.+...-+.+.++..--..--..++++.++|..+++.+++..+++|+..|..|..+
T Consensus 92 Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlvi 155 (372)
T KOG3912|consen 92 PALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVI 155 (372)
T ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhhe
Confidence 4455555554444444444433333344556789999999999999999999999999888644
No 82
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=52.04 E-value=79 Score=26.02 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=14.3
Q ss_pred hhhHHHHHHHhhhhheecc
Q 029315 167 LYCLIALPLVVSSISIYQK 185 (195)
Q Consensus 167 ~~~~~G~~lV~~s~~ly~~ 185 (195)
..-.+|.+++++|..+|..
T Consensus 116 ~Ln~~G~~l~~~~~~~f~f 134 (254)
T PF07857_consen 116 WLNYIGVALVLVSGIIFSF 134 (254)
T ss_pred HHHHHHHHHHHHHHHheee
Confidence 4467899999888777664
No 83
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=51.76 E-value=32 Score=29.24 Aligned_cols=66 Identities=15% Similarity=0.060 Sum_probs=55.0
Q ss_pred HHHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheecc
Q 029315 120 VIFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQK 185 (195)
Q Consensus 120 v~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~ 185 (195)
-..++++...-+..++|..-...-..-+.+++++.++++++.++..+....+....+..|+.+-..
T Consensus 90 ~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~ 155 (316)
T KOG1441|consen 90 GLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV 155 (316)
T ss_pred HHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeee
Confidence 455666777777888888887777888999999999999999999999999888888888766554
No 84
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.95 E-value=1.1e+02 Score=23.19 Aligned_cols=135 Identities=18% Similarity=0.218 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHHHHHH
Q 029315 45 YGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPVIFNS 124 (195)
Q Consensus 45 ~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v~~~a 124 (195)
+.++..+++..+....+..+-+.-+.-+.+ ..-...=+..|++........ .++.+ ......+-++|.|.- ..
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~sp-l~As~isf~vGt~~L~~l~l~-~~~~~--~~a~~~~~pwW~~~G---G~ 77 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLGSP-LLASLISFLVGTVLLLILLLI-KQGHP--GLAAVASAPWWAWIG---GL 77 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHH-hcCCC--chhhccCCchHHHHc---cc
Confidence 445666667777777777777776655433 222222233344333333322 22211 111122334444431 13
Q ss_pred HhhHHhhhhhh----cccchhhHHHHHHHHHHHHHHHHHhc-C---CCCchhhHHHHHHHhhhhheeccC
Q 029315 125 LGGILVGLVTS----HAGGVRKGFVIVSALLVTAMLQFIFE-G---KPPSLYCLIALPLVVSSISIYQKY 186 (195)
Q Consensus 125 ~gg~~v~~vlk----~~~~i~k~~~~~~siv~s~lls~~lf-g---~~~t~~~~~G~~lV~~s~~ly~~~ 186 (195)
+|.+.+...+. .....+.....+..++.+.+++-+=+ | .+++..-++|.++++.|+++..+.
T Consensus 78 lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 78 LGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred hhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 34333322222 23333344445555666677766432 2 789999999999999997776554
No 85
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=49.79 E-value=71 Score=22.91 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=20.4
Q ss_pred CcCcHHHHHHHHHHHHHHHHHhcC
Q 029315 4 QRQSMQQIVAVFLLILAAVFLSIG 27 (195)
Q Consensus 4 ~~ls~~qw~al~ll~~Gv~~~~~~ 27 (195)
-|+++.|-.|+.+.++|..+.-.+
T Consensus 6 ~KiN~~R~~al~lif~g~~vmy~g 29 (114)
T PF11023_consen 6 SKINKIRTFALSLIFIGMIVMYIG 29 (114)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Confidence 467889999999999998888764
No 86
>COG4711 Predicted membrane protein [Function unknown]
Probab=49.53 E-value=1.2e+02 Score=24.29 Aligned_cols=20 Identities=25% Similarity=0.394 Sum_probs=10.1
Q ss_pred CcCcHHHHHHHHHHHHHHHH
Q 029315 4 QRQSMQQIVAVFLLILAAVF 23 (195)
Q Consensus 4 ~~ls~~qw~al~ll~~Gv~~ 23 (195)
.|+|+.+.+++++.+++.+-
T Consensus 119 ~~isp~h~lal~~~~l~I~y 138 (217)
T COG4711 119 YRISPYHSLALVLVVLVIMY 138 (217)
T ss_pred HHcCHHHHHHHHHHHHHHHH
Confidence 34555555555555555443
No 87
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.80 E-value=59 Score=22.85 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhe
Q 029315 142 KGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI 182 (195)
Q Consensus 142 k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~l 182 (195)
|..-...++.+=..+|++..+||+.++.+.|..++..+.+.
T Consensus 72 K~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~f 112 (116)
T COG3169 72 KTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYF 112 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 44444445556667888999999999999999999888754
No 88
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=46.73 E-value=6.5 Score=32.95 Aligned_cols=81 Identities=14% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCCcC-cHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHH-H
Q 029315 2 CRQRQ-SMQQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLM-T 79 (195)
Q Consensus 2 l~~~l-s~~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~-n 79 (195)
+|||+ -+.-.+|++++++-..+..+=. ......++|++..++++++.=..=.|+| ++++++.++|.- .
T Consensus 72 F~RrLLCPLGlLCiilimi~lLv~~L~t---------LtGQ~LF~Gi~~l~l~~lLaL~vW~Ym~-lLr~~GAs~WtiLa 141 (381)
T PF05297_consen 72 FKRRLLCPLGLLCIILIMIVLLVSMLWT---------LTGQTLFVGIVILFLCCLLALGVWFYMW-LLRELGASFWTILA 141 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhcCcchHHHHHHHHHHHHHHHHHH---------hhccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHH
Confidence 44443 3455556666655444443311 1235667899988888886655455755 778888888864 5
Q ss_pred HHHHHHHHHHhhh
Q 029315 80 IEMSIVGSLCLLA 92 (195)
Q Consensus 80 ~~l~~~~~l~~~~ 92 (195)
+.++++-++..++
T Consensus 142 FcLAF~LaivlLI 154 (381)
T PF05297_consen 142 FCLAFLLAIVLLI 154 (381)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 5566555444433
No 89
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=45.71 E-value=1.4e+02 Score=25.76 Aligned_cols=66 Identities=11% Similarity=0.172 Sum_probs=40.5
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHH-HHHHHHHHHHHHhhhhhhccCCchhhhh
Q 029315 40 DHILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYL-MTIEMSIVGSLCLLASISKSPDGEAIRQ 105 (195)
Q Consensus 40 ~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~-~n~~l~~~~~l~~~~~~~~~~~~~~~~~ 105 (195)
..-.+.|.+.++++-...|-||..-||-+.++.+.... .-+.++..+-+....+..-.+.++++.+
T Consensus 134 g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~ 200 (344)
T PF06379_consen 134 GQIVLLGVAVCLIGIAICGKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHE 200 (344)
T ss_pred chhhhhHHHHHHHHHHHHhHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 45678999999999999999999999987654332222 2333444433333333333344555433
No 90
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=44.73 E-value=26 Score=28.92 Aligned_cols=68 Identities=18% Similarity=0.021 Sum_probs=46.1
Q ss_pred hhHHhhhhhhcccchhhHH-HHHHHHHHHHHHHHHhcCCCCchhhH----HHHHHHhhhhheeccCCCccccC
Q 029315 126 GGILVGLVTSHAGGVRKGF-VIVSALLVTAMLQFIFEGKPPSLYCL----IALPLVVSSISIYQKYPYQVKKK 193 (195)
Q Consensus 126 gg~~v~~vlk~~~~i~k~~-~~~~siv~s~lls~~lfg~~~t~~~~----~G~~lV~~s~~ly~~~~~~~~~~ 193 (195)
|...---.+++.+.....+ .+...++-+.+++++.|||=.+...+ +..++++.|+++-+..++.+|+.
T Consensus 72 GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~ 144 (288)
T COG4975 72 GQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEE 144 (288)
T ss_pred hhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccc
Confidence 4443334556655555544 56778899999999999987776553 45667788888877766655543
No 91
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=37.97 E-value=61 Score=28.41 Aligned_cols=60 Identities=13% Similarity=0.110 Sum_probs=49.7
Q ss_pred hHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccC
Q 029315 127 GILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKY 186 (195)
Q Consensus 127 g~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~ 186 (195)
-+..+..++|.+--..+..++.|-+++..++..+-+|++|...+++..+-+.|+.+-+..
T Consensus 173 nl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~ 232 (416)
T KOG2765|consen 173 NLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMG 232 (416)
T ss_pred HHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEec
Confidence 345566777766666667778888899999999999999999999999999998877765
No 92
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=36.68 E-value=1.7e+02 Score=21.71 Aligned_cols=54 Identities=19% Similarity=0.197 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 029315 11 IVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGLASALCQWASQVKK 72 (195)
Q Consensus 11 w~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~ 72 (195)
++++..+.++++-.-.....+. +....|..++++++.++.+.+.|.-...||.+
T Consensus 10 ~l~~Ff~~~~~vY~~~t~~~~~--------~~E~~Gt~aL~ls~~l~~mig~yl~~~~rr~~ 63 (137)
T PF12270_consen 10 GLAVFFLVVAVVYGFWTKWSGD--------GGEWVGTVALVLSGGLALMIGFYLRFTARRIG 63 (137)
T ss_pred HHHHHHHHHHHHHHHHHhccCC--------CCCcchHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4455555555554443332211 12458999999999999999999998887764
No 93
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=34.85 E-value=87 Score=19.90 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheec
Q 029315 146 IVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQ 184 (195)
Q Consensus 146 ~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~ 184 (195)
....+.++..++.+++.+++.....++++.+..+.|+..
T Consensus 32 a~~~m~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~i~~ 70 (71)
T PF04304_consen 32 ALLMMWLSMGISAFFFVPNLWVRIVLAAILLIVAIYILR 70 (71)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhee
Confidence 344444555666566666666666666666666666543
No 94
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=34.70 E-value=74 Score=22.61 Aligned_cols=46 Identities=9% Similarity=0.316 Sum_probs=32.9
Q ss_pred cchhhHHHHHHHHH--HHHHHHHHhcCCCCchhhHHHHHHHhhhhhee
Q 029315 138 GGVRKGFVIVSALL--VTAMLQFIFEGKPPSLYCLIALPLVVSSISIY 183 (195)
Q Consensus 138 ~~i~k~~~~~~siv--~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly 183 (195)
++-=+.++.+..+. .|.+-.+.+.|++|+..-++|..+++.|+.+-
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI 101 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAII 101 (107)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe
Confidence 44455555555544 45566667789999999999999998886443
No 95
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=34.03 E-value=1.4e+02 Score=19.72 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=10.3
Q ss_pred CcCcHHHHHHHHHHH
Q 029315 4 QRQSMQQIVAVFLLI 18 (195)
Q Consensus 4 ~~ls~~qw~al~ll~ 18 (195)
.|.|..+|+++++-+
T Consensus 18 trVT~n~~vg~~lt~ 32 (74)
T PF09964_consen 18 TRVTYNHYVGTILTV 32 (74)
T ss_pred hhhhHHHHHHHHHHH
Confidence 467888888875443
No 96
>PRK02935 hypothetical protein; Provisional
Probab=33.99 E-value=1.2e+02 Score=21.46 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=20.4
Q ss_pred CcCcHHHHHHHHHHHHHHHHHhcCC
Q 029315 4 QRQSMQQIVAVFLLILAAVFLSIGE 28 (195)
Q Consensus 4 ~~ls~~qw~al~ll~~Gv~~~~~~~ 28 (195)
-|+++.|=.|+.+.++|..+.-.+-
T Consensus 7 sKINkiRt~aL~lvfiG~~vMy~Gi 31 (110)
T PRK02935 7 NKINKIRTFALSLVFIGFIVMYLGI 31 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999988877653
No 97
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.75 E-value=11 Score=31.57 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=41.0
Q ss_pred hhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheecc
Q 029315 131 GLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQK 185 (195)
Q Consensus 131 ~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~ 185 (195)
+.++||.+-..-...-++..+++.++++++++++=+..-+.+..+|+.|-++=.+
T Consensus 120 nlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvd 174 (347)
T KOG1442|consen 120 NLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVD 174 (347)
T ss_pred ceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccc
Confidence 3567776665555566677799999999999998888877777777777655433
No 98
>PRK02237 hypothetical protein; Provisional
Probab=33.72 E-value=82 Score=22.44 Aligned_cols=43 Identities=7% Similarity=0.280 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHH--HHHHHHHHhcCCCCchhhHHHHHHHhhhhhe
Q 029315 140 VRKGFVIVSALL--VTAMLQFIFEGKPPSLYCLIALPLVVSSISI 182 (195)
Q Consensus 140 i~k~~~~~~siv--~s~lls~~lfg~~~t~~~~~G~~lV~~s~~l 182 (195)
-=+.++.+..+. .|.+-.+...|.+|+..-++|..+++.|+.+
T Consensus 58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~i 102 (109)
T PRK02237 58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAV 102 (109)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHH
Confidence 334455555444 4555666778999999999999999888643
No 99
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=33.48 E-value=2.7e+02 Score=22.81 Aligned_cols=125 Identities=14% Similarity=0.080 Sum_probs=62.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCchhhhhcccccccchhhHHHH-
Q 029315 42 ILFYGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLIPV- 120 (195)
Q Consensus 42 ~~~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~~v- 120 (195)
+...|+.++++++++.+..++..+..+++-+ +....-.... .+.++..... .....+. ..-++......
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~-~~~~~~~R~~-~a~l~l~~~~--~~~~~~~------~~~~~~~~~~~g 78 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFPLVG-APGVTALRLA-LGTLILIAIF--KPWRLRF------AKEQRLPLLFYG 78 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHcC-HHHHHHHHHH-HHHHHHHHHH--hHHhccC------CHHHHHHHHHHH
Confidence 3457889999999999998888877775432 2222222222 2223322211 0010000 00011111111
Q ss_pred HHHHHhhHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhhe
Q 029315 121 IFNSLGGILVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISI 182 (195)
Q Consensus 121 ~~~a~gg~~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~l 182 (195)
........+....++|.+...........++++.+++. +++... .+..+.+.|+++
T Consensus 79 ~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~~--~~~~i~~~Gv~l 134 (293)
T PRK10532 79 VSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVDF--VWVVLAVLGLWF 134 (293)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHHH--HHHHHHHHHHhe
Confidence 11222223444567787777777777777877777662 455443 344444555544
No 100
>smart00793 AgrB Accessory gene regulator B. The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein PUBMED:11195102. AgrB is involved in the proteolyt
Probab=33.21 E-value=1.3e+02 Score=23.13 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=26.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccCCCccccC
Q 029315 136 HAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYPYQVKKK 193 (195)
Q Consensus 136 ~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~~~~~~~ 193 (195)
|+++-.+|+..+..+.+...+-.-.++ .+....+...++ ....+|-..|.+++.|
T Consensus 72 Ha~t~~~C~i~S~~~~~~~~~l~~~~~--~~~~~~~ii~i~-s~~~i~~~APv~~~~k 126 (184)
T smart00793 72 HAKSSLLCTLLSIIIFVGIPFLIKFLD--LNLPFILGLFLI-GLVLIYIYAPADTEKQ 126 (184)
T ss_pred ecCCcHHHHHHHHHHHHHHHHHHHHcC--hhHHHHHHHHHH-HHHHHHhcCCcccccC
Confidence 688888887766655544433322222 444444433222 2233444445444433
No 101
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=31.42 E-value=1.8e+02 Score=20.69 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHH
Q 029315 9 QQIVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVA 53 (195)
Q Consensus 9 ~qw~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a 53 (195)
.|++++++..+|..+.-......+ .+.-.+.+..+|+...++.
T Consensus 42 l~~l~~~~~~~G~~~~~~~~~~~~--~~h~~s~Hs~lGl~~~~l~ 84 (131)
T cd08554 42 LHLLAFVLGLVGLLAVFLFHNAGG--IANLYSLHSWLGLATVLLF 84 (131)
T ss_pred HHHHHHHHHHHHHHHHHHhccccC--cccchhHHHHHHHHHHHHH
Confidence 456666666666665544322111 1112234556666555443
No 102
>PRK10527 hypothetical protein; Provisional
Probab=30.51 E-value=1.5e+02 Score=21.60 Aligned_cols=32 Identities=16% Similarity=0.067 Sum_probs=15.5
Q ss_pred cCCCCchhhHHHHHHHhhhhheeccCCCcccc
Q 029315 161 EGKPPSLYCLIALPLVVSSISIYQKYPYQVKK 192 (195)
Q Consensus 161 fg~~~t~~~~~G~~lV~~s~~ly~~~~~~~~~ 192 (195)
+.+++-....++...+....|+..+.++++++
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~i~~~pt~~~~~ 122 (125)
T PRK10527 91 LVQMPWVRILLLVILACLLIFMWRIPVIDEKQ 122 (125)
T ss_pred HhhHHHHHHHHHHHHHHHHHheeecCCCCccc
Confidence 33344334444444444456777765544333
No 103
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=28.95 E-value=4.9 Score=33.04 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHH
Q 029315 11 IVAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASV 55 (195)
Q Consensus 11 w~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~ 55 (195)
..|++++..|+.+....+.+++ +++..+++-.|+..++.+++
T Consensus 121 ~iAliliviG~~lTs~~~~~nk---~~~~~~n~kkgi~~L~iSt~ 162 (288)
T COG4975 121 FIALILIVIGIYLTSKQDRNNK---EEENPSNLKKGIVILLISTL 162 (288)
T ss_pred HHHHHHHHHhheEeeeeccccc---cccChHhhhhheeeeeeecc
Confidence 4688889999988887776543 22333455567766655554
No 104
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=27.50 E-value=1.9e+02 Score=20.60 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 029315 9 QQIVAVFLLILAAVFLS 25 (195)
Q Consensus 9 ~qw~al~ll~~Gv~~~~ 25 (195)
.|..++++..+|..+.-
T Consensus 40 lq~~a~~~~~~g~~~~~ 56 (129)
T smart00665 40 LQILALVLGVIGLLAIF 56 (129)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35566666666655543
No 105
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=26.69 E-value=3.5e+02 Score=23.20 Aligned_cols=119 Identities=8% Similarity=0.032 Sum_probs=71.0
Q ss_pred HHHHHHhhccCCCchHHHHHHH---HHHHHHHhhhhhhccCCchhhhhcccccccchhhHH----HHHHHHHh-hHHhhh
Q 029315 61 SALCQWASQVKKHSSYLMTIEM---SIVGSLCLLASISKSPDGEAIRQHGFFYGWTPLTLI----PVIFNSLG-GILVGL 132 (195)
Q Consensus 61 ~vy~e~~~k~~~~~~~~~n~~l---~~~~~l~~~~~~~~~~~~~~~~~~~ff~g~~~~~~~----~v~~~a~g-g~~v~~ 132 (195)
.-|+.+.-|+.+-|..+.+.|+ +.++.+.-.+. +..+ ++-..+++|...+ +...-+.. =-+.++
T Consensus 32 tf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~----~~~~----~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~ 103 (349)
T KOG1443|consen 32 TFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLY----QCSV----PRARVVLSWRDYLRRLAPTALATALDIGLSNW 103 (349)
T ss_pred HHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHH----hccC----CccccCCcHHHHHHHhhhhhhhhhcccccccc
Confidence 5566666666666777776664 33332222121 1111 1111244444333 22211111 023567
Q ss_pred hhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccCC
Q 029315 133 VTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYP 187 (195)
Q Consensus 133 vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~ 187 (195)
.+.|..-..-..+-+-++++-.++|.++-=|.+.+..++-..++..|+++.+..+
T Consensus 104 sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks 158 (349)
T KOG1443|consen 104 SLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS 158 (349)
T ss_pred eeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc
Confidence 7778776666667777888888888887779999999888888888888877654
No 106
>PRK11715 inner membrane protein; Provisional
Probab=26.36 E-value=4.7e+02 Score=23.37 Aligned_cols=46 Identities=11% Similarity=0.007 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHh
Q 029315 45 YGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCL 90 (195)
Q Consensus 45 ~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~ 90 (195)
.+..-++.++.+.++.+.|.-.++|+.+....+-.+...++|.+..
T Consensus 357 F~~AYliAa~a~v~li~~Y~~~vl~~~k~g~~~~~~L~~LYg~Ly~ 402 (436)
T PRK11715 357 FTLAYLIAALACVLLIGFYLSAVLRSWKRGLLFAAALAALYGVLYG 402 (436)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 4555667788888899999999999887666665555566664443
No 107
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=26.16 E-value=1.5e+02 Score=25.54 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=48.4
Q ss_pred HhhhhhhcccchhhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheec
Q 029315 129 LVGLVTSHAGGVRKGFVIVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQ 184 (195)
Q Consensus 129 ~v~~vlk~~~~i~k~~~~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~ 184 (195)
+.-..+.+.|+.+-....-+-|.-|++++.++++.+++..++...++-..|+-+-+
T Consensus 108 l~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 108 LQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 34466778888888888899999999999999999999999999999988886666
No 108
>COG4042 Predicted membrane protein [Function unknown]
Probab=24.50 E-value=1.7e+02 Score=20.18 Aligned_cols=28 Identities=21% Similarity=-0.016 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 029315 45 YGIVPVLVASVLSGLASALCQWASQVKK 72 (195)
Q Consensus 45 ~G~~~~l~a~~~s~~a~vy~e~~~k~~~ 72 (195)
.+..+...+.++|++...|.||++-+.+
T Consensus 75 ~~a~lgavaG~lsA~~taY~ek~FprPe 102 (104)
T COG4042 75 PLASLGAVAGLLSALLTAYAEKLFPRPE 102 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444555667788888899999986654
No 109
>PRK00611 putative disulfide oxidoreductase; Provisional
Probab=22.41 E-value=3.3e+02 Score=20.12 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCch-HHHHHHHHHHHH
Q 029315 50 VLVASVLSGLASALCQWASQVKKHSS-YLMTIEMSIVGS 87 (195)
Q Consensus 50 ~l~a~~~s~~a~vy~e~~~k~~~~~~-~~~n~~l~~~~~ 87 (195)
.-+-++..-.++.|.|.++.-++-+. |.|-+.++..+.
T Consensus 13 aw~va~~a~~~sLy~q~v~gl~PC~LCiyQRi~~~~l~l 51 (135)
T PRK00611 13 AWLISCIGTLMSIYYSYILNVEPCVLCYYQRICLFPLVV 51 (135)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 33334444455789999987776554 667777777773
No 110
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=22.29 E-value=2.2e+02 Score=18.03 Aligned_cols=47 Identities=13% Similarity=0.060 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHH
Q 029315 12 VAVFLLILAAVFLSIGEGSSKRSSSGDPDHILFYGIVPVLVASVLSGL 59 (195)
Q Consensus 12 ~al~ll~~Gv~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~s~~ 59 (195)
.++.++..|+.+.+....+..+++.. .......|.++..++.++...
T Consensus 16 t~l~l~~~g~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 62 (73)
T PF02656_consen 16 TALALVGVGLALLRFFSLDHPSSSAS-RRVSKVLGLLLIVLGLLTLIY 62 (73)
T ss_pred HHHHHHHHHHHHHHhccccccccccc-hHHHHHHHHHHHHHHHHHHHH
Confidence 36667777777777655432211111 223445566655555554443
No 111
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=22.23 E-value=2.7e+02 Score=19.08 Aligned_cols=27 Identities=4% Similarity=0.228 Sum_probs=16.0
Q ss_pred CCcCcHHHHHHHHH------HHHHHHHHhcCCC
Q 029315 3 RQRQSMQQIVAVFL------LILAAVFLSIGEG 29 (195)
Q Consensus 3 ~~~ls~~qw~al~l------l~~Gv~~~~~~~~ 29 (195)
+|++|.+..++=++ ..+|+++++++|.
T Consensus 27 ~Epit~RL~iGR~ilGs~~S~~Aga~Li~~Pdl 59 (89)
T PF04550_consen 27 NEPITLRLFIGRVILGSAVSVVAGAALIQFPDL 59 (89)
T ss_pred CCCCchhHHhHHHHHhhHHHHHHHHHHhcCCCC
Confidence 46666666665444 3556666666655
No 112
>PF04133 Vps55: Vacuolar protein sorting 55 ; InterPro: IPR007262 Vps55 is involved in the secretion of the Golgi form of the soluble vacuolar carboxypeptidase Y, but not the trafficking of the membrane-bound vacuolar alkaline phosphatase. Both Vps55 and obesity receptor gene-related protein are important for functioning membrane trafficking to the vacuole/lysosome of eukaryotic cells [].
Probab=22.01 E-value=3.1e+02 Score=19.77 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccCCCchHH-HHHHHHHHHHHHhhhhhhccCCchhhhhcccccc---cchhhHHH
Q 029315 44 FYGIVPVLVASVLSGLASALCQWASQVKKHSSYL-MTIEMSIVGSLCLLASISKSPDGEAIRQHGFFYG---WTPLTLIP 119 (195)
Q Consensus 44 ~~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~-~n~~l~~~~~l~~~~~~~~~~~~~~~~~~~ff~g---~~~~~~~~ 119 (195)
.+|+++.+++|.+ +| +.|. .....|..+=+|+.+..-.. +. +.+-+. +.-.....
T Consensus 9 aiG~lL~IL~CAL-----------~~----nw~PL~v~~~y~laPiP~~i~~~~~-~~-----~~~~~~~~~~~d~~~Fl 67 (120)
T PF04133_consen 9 AIGFLLVILSCAL-----------YK----NWWPLFVVLFYVLAPIPNLIARRYS-SD-----DDFSSDSGSCQDFGKFL 67 (120)
T ss_pred HHHHHHHHHHHHH-----------hc----ccHHHHHHHHHHHHhhhHHHHCCCC-CC-----cccccCcchHHHHHHHH
Confidence 4788888888884 22 3343 34445666666665531111 11 111111 11122233
Q ss_pred HHHHHHhhHHhhhhhhcccchhhH
Q 029315 120 VIFNSLGGILVGLVTSHAGGVRKG 143 (195)
Q Consensus 120 v~~~a~gg~~v~~vlk~~~~i~k~ 143 (195)
.....+.|+....+++|++-|..+
T Consensus 68 T~~~vvSg~aLP~VL~H~~~I~~~ 91 (120)
T PF04133_consen 68 TGFLVVSGFALPIVLAHAGIIQWG 91 (120)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHH
Confidence 444566888889999999887654
No 113
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=21.87 E-value=1.3e+02 Score=20.07 Aligned_cols=27 Identities=19% Similarity=0.039 Sum_probs=17.0
Q ss_pred hhHHHHHHH-----hhhhheeccCCCccccCC
Q 029315 168 YCLIALPLV-----VSSISIYQKYPYQVKKKE 194 (195)
Q Consensus 168 ~~~~G~~lV-----~~s~~ly~~~~~~~~~~~ 194 (195)
.++.|.++. ++|-|+++++.|++|.++
T Consensus 42 qfl~G~~lf~~G~~Fi~GfI~~RDRKrnkV~p 73 (77)
T PF11118_consen 42 QFLAGLLLFAIGVGFIAGFILHRDRKRNKVQP 73 (77)
T ss_pred HHHHHHHHHHHHHHHHHhHhheeeccccccch
Confidence 344444444 445588888888887654
No 114
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=21.72 E-value=5.8e+02 Score=22.76 Aligned_cols=46 Identities=15% Similarity=0.155 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHh
Q 029315 45 YGIVPVLVASVLSGLASALCQWASQVKKHSSYLMTIEMSIVGSLCL 90 (195)
Q Consensus 45 ~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n~~l~~~~~l~~ 90 (195)
.+..-.+.++.+.++.+.|.-.++|+.+....+--+...+++.+..
T Consensus 351 F~~AYliAa~a~i~Li~~Y~~~vl~~~k~~~~~~~~L~~LY~~Ly~ 396 (430)
T PF06123_consen 351 FNLAYLIAALACIGLISLYLSSVLKSWKRGLIFAGLLAALYGFLYV 396 (430)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 4455567777888899999999999886655554555555564443
No 115
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=21.51 E-value=6.7e+02 Score=23.41 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 029315 8 MQQIVAVFLLILAAVFLSIGE 28 (195)
Q Consensus 8 ~~qw~al~ll~~Gv~~~~~~~ 28 (195)
..-|++.+|.+.|..+...+=
T Consensus 238 ~lD~IG~~L~~~Gl~LfLlgl 258 (599)
T PF06609_consen 238 ELDWIGIFLFIAGLALFLLGL 258 (599)
T ss_pred HhhHHHHHHHHHHHHHHHHHH
Confidence 334899999999998886543
No 116
>PF04647 AgrB: Accessory gene regulator B; InterPro: IPR006741 The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein [] involved in the proteolytic processing of AgrD, and may have both proteolytic and transporter activities, facilitating the export of the processed AgrD peptide []. ; GO: 0016020 membrane
Probab=20.80 E-value=1.7e+02 Score=22.21 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=15.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHH
Q 029315 136 HAGGVRKGFVIVSALLVTAMLQF 158 (195)
Q Consensus 136 ~~~~i~k~~~~~~siv~s~lls~ 158 (195)
|+++-.+|+..+..+.....+-.
T Consensus 72 Ha~t~~~C~i~s~~~~~~~~~~~ 94 (185)
T PF04647_consen 72 HAKTFFRCFIFSVLIFIIIILLI 94 (185)
T ss_pred eCCCChHHHHHHHHHHHHHHHHH
Confidence 78888888876666665555444
No 117
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=20.37 E-value=1.1e+02 Score=19.89 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 029315 45 YGIVPVLVASVLSGLASALC 64 (195)
Q Consensus 45 ~G~~~~l~a~~~s~~a~vy~ 64 (195)
+|++=+.+.+++||+++|..
T Consensus 13 i~ViGVt~mAiLSG~gaVst 32 (72)
T PF12537_consen 13 IGVIGVTLMAILSGFGAVST 32 (72)
T ss_pred HHHHHHHHHHHHhhhhHHcc
Confidence 56666677889999998844
Done!