Query 029315
Match_columns 195
No_of_seqs 137 out of 770
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 17:52:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029315.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029315hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.0 9E-06 3.1E-10 59.6 5.0 69 118-186 35-104 (137)
2 3b5d_A Multidrug transporter E 97.9 6.2E-05 2.1E-09 52.9 8.1 69 119-187 36-105 (110)
3 2i68_A Protein EMRE; transmemb 90.9 0.06 2E-06 39.0 0.8 28 1-28 78-105 (137)
4 2l2t_A Receptor tyrosine-prote 15.4 69 0.0024 18.1 1.4 15 176-190 26-40 (44)
5 1m45_B IQ2, IQ2 motif from MYO 9.3 1E+02 0.0036 14.7 0.7 16 131-146 3-18 (26)
6 2hn8_A Protein PB1-F2; Pro-apo 8.7 26 0.0009 18.9 -1.8 11 4-14 5-15 (38)
7 2ks1_B Epidermal growth factor 8.0 1.6E+02 0.0054 16.5 1.2 11 177-187 28-38 (44)
8 2l9u_A Receptor tyrosine-prote 7.6 1.5E+02 0.0051 15.8 0.9 10 176-185 22-31 (40)
9 1u7g_A Probable ammonium trans 6.9 1E+03 0.034 19.6 7.1 35 45-79 229-263 (385)
10 2ls4_A High affinity copper up 8.7 1.1E+02 0.0038 15.1 0.0 17 147-163 6-22 (26)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.96 E-value=9e-06 Score=59.56 Aligned_cols=69 Identities=13% Similarity=0.093 Sum_probs=48.8
Q ss_pred HHHHHHHHhhHHhhhhhhcccchhhHHH-HHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccC
Q 029315 118 IPVIFNSLGGILVGLVTSHAGGVRKGFV-IVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKY 186 (195)
Q Consensus 118 ~~v~~~a~gg~~v~~vlk~~~~i~k~~~-~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~ 186 (195)
+.++..++.-.+....+|+.+....... +.++++++.++++++|||+++...++|+.+|+.|+++....
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3445556666788899999999988776 89999999999999999999999999999999999877654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.88 E-value=6.2e-05 Score=52.92 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=58.5
Q ss_pred HHHHHHHhhHHhhhhhhcccchhhHHH-HHHHHHHHHHHHHHhcCCCCchhhHHHHHHHhhhhheeccCC
Q 029315 119 PVIFNSLGGILVGLVTSHAGGVRKGFV-IVSALLVTAMLQFIFEGKPPSLYCLIALPLVVSSISIYQKYP 187 (195)
Q Consensus 119 ~v~~~a~gg~~v~~vlk~~~~i~k~~~-~~~siv~s~lls~~lfg~~~t~~~~~G~~lV~~s~~ly~~~~ 187 (195)
.+....+.-.+.+..+|+.|....... ...+++++.++++++|||+++...++|..+++.|+.+-...+
T Consensus 36 ~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344445555777889999999888776 899999999999999999999999999999999998776644
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=90.95 E-value=0.06 Score=39.01 Aligned_cols=28 Identities=14% Similarity=0.353 Sum_probs=18.7
Q ss_pred CCCCcCcHHHHHHHHHHHHHHHHHhcCC
Q 029315 1 MCRQRQSMQQIVAVFLLILAAVFLSIGE 28 (195)
Q Consensus 1 ~l~~~ls~~qw~al~ll~~Gv~~~~~~~ 28 (195)
++||++|..||.++.+..+|++++...+
T Consensus 78 ~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 78 FFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3799999999999999999999998654
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=15.44 E-value=69 Score=18.07 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=8.2
Q ss_pred HhhhhheeccCCCcc
Q 029315 176 VVSSISIYQKYPYQV 190 (195)
Q Consensus 176 V~~s~~ly~~~~~~~ 190 (195)
+....++|.+..+.+
T Consensus 26 i~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 26 VGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHTTCSS
T ss_pred HHHHHHHHhhhhhhh
Confidence 344557777654433
No 5
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=9.31 E-value=1e+02 Score=14.73 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=11.6
Q ss_pred hhhhhcccchhhHHHH
Q 029315 131 GLVTSHAGGVRKGFVI 146 (195)
Q Consensus 131 ~~vlk~~~~i~k~~~~ 146 (195)
+-.+||..|-.|+|..
T Consensus 3 sqaikylqnnikgfii 18 (26)
T 1m45_B 3 SQAIKYLQNNIKGFII 18 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccceEEE
Confidence 4567888888888753
No 6
>2hn8_A Protein PB1-F2; Pro-apoptotic mitochondrial targeting protein, viral protein; NMR {Synthetic}
Probab=8.67 E-value=26 Score=18.93 Aligned_cols=11 Identities=18% Similarity=0.093 Sum_probs=6.4
Q ss_pred CcCcHHHHHHH
Q 029315 4 QRQSMQQIVAV 14 (195)
Q Consensus 4 ~~ls~~qw~al 14 (195)
+..+++||.++
T Consensus 5 qtv~wkqWlsl 15 (38)
T 2hn8_A 5 QIVYWKQWLSL 15 (38)
T ss_dssp HHHHHHHHHTT
T ss_pred cceeHHHHhhc
Confidence 34556666655
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=8.04 E-value=1.6e+02 Score=16.49 Aligned_cols=11 Identities=9% Similarity=0.295 Sum_probs=6.0
Q ss_pred hhhhheeccCC
Q 029315 177 VSSISIYQKYP 187 (195)
Q Consensus 177 ~~s~~ly~~~~ 187 (195)
..+.++|.+..
T Consensus 28 ~~~~~~~~RRr 38 (44)
T 2ks1_B 28 ALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHhhhh
Confidence 44456666643
No 8
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=7.57 E-value=1.5e+02 Score=15.79 Aligned_cols=10 Identities=10% Similarity=0.381 Sum_probs=6.6
Q ss_pred Hhhhhheecc
Q 029315 176 VVSSISIYQK 185 (195)
Q Consensus 176 V~~s~~ly~~ 185 (195)
+..++|+|.+
T Consensus 22 ~lg~tflywr 31 (40)
T 2l9u_A 22 MLGGTFLYWR 31 (40)
T ss_dssp HHHHHHHHHH
T ss_pred HhCceeEEEc
Confidence 3556788865
No 9
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=6.86 E-value=1e+03 Score=19.61 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHH
Q 029315 45 YGIVPVLVASVLSGLASALCQWASQVKKHSSYLMT 79 (195)
Q Consensus 45 ~G~~~~l~a~~~s~~a~vy~e~~~k~~~~~~~~~n 79 (195)
.-.+-+.+++..+++.....|+..+++.+.....|
T Consensus 229 ~a~~nT~lAaaag~l~~~~~~~~~~gk~~~~~~~n 263 (385)
T 1u7g_A 229 LAFVNTVVATAAAILGWIFGEWALRGLPSLLGACS 263 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34455667777788888888988765544445555
No 10
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=8.72 E-value=1.1e+02 Score=15.12 Aligned_cols=17 Identities=12% Similarity=-0.038 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhcCC
Q 029315 147 VSALLVTAMLQFIFEGK 163 (195)
Q Consensus 147 ~~siv~s~lls~~lfg~ 163 (195)
.+++++.+.++.++|+.
T Consensus 6 ~iavvlGa~~Gyf~F~~ 22 (26)
T 2ls4_A 6 CIAVAAGAGTGYFLFSW 22 (26)
Confidence 34455556666666553
Done!