BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029316
(195 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 65/87 (74%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+
Sbjct: 7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 69 EAQKAVDRLDGRVVDGREITVQFAKYG 95
+A+ A+D +DG V+DGRE+ VQ A+YG
Sbjct: 67 DAEDAMDAMDGAVLDGRELRVQMARYG 93
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes
GN=SRSF2 PE=2 SV=3
Length = 221
Score = 100 bits (249), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 65/87 (74%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+
Sbjct: 7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 69 EAQKAVDRLDGRVVDGREITVQFAKYG 95
+A+ A+D +DG V+DGRE+ VQ A+YG
Sbjct: 67 DAEDAMDAMDGAVLDGRELRVQMARYG 93
>sp|Q06A98|SRSF2_PIG Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2
PE=2 SV=1
Length = 221
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 65/87 (74%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+
Sbjct: 7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 69 EAQKAVDRLDGRVVDGREITVQFAKYG 95
+A+ A+D +DG V+DGRE+ VQ A+YG
Sbjct: 67 DAEDAMDAMDGAVLDGRELRVQMARYG 93
>sp|Q6PDU1|SRSF2_RAT Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus
GN=Srsf2 PE=1 SV=3
Length = 221
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 65/87 (74%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+
Sbjct: 7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 69 EAQKAVDRLDGRVVDGREITVQFAKYG 95
+A+ A+D +DG V+DGRE+ VQ A+YG
Sbjct: 67 DAEDAMDAMDGAVLDGRELRVQMARYG 93
>sp|Q62093|SRSF2_MOUSE Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2
PE=1 SV=4
Length = 221
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 65/87 (74%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+
Sbjct: 7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 69 EAQKAVDRLDGRVVDGREITVQFAKYG 95
+A+ A+D +DG V+DGRE+ VQ A+YG
Sbjct: 67 DAEDAMDAMDGAVLDGRELRVQMARYG 93
>sp|Q01130|SRSF2_HUMAN Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2
PE=1 SV=4
Length = 221
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 65/87 (74%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+
Sbjct: 7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 69 EAQKAVDRLDGRVVDGREITVQFAKYG 95
+A+ A+D +DG V+DGRE+ VQ A+YG
Sbjct: 67 DAEDAMDAMDGAVLDGRELRVQMARYG 93
>sp|Q3MHR5|SRSF2_BOVIN Serine/arginine-rich splicing factor 2 OS=Bos taurus GN=SRSF2
PE=2 SV=3
Length = 221
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 65/87 (74%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+
Sbjct: 7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 69 EAQKAVDRLDGRVVDGREITVQFAKYG 95
+A+ A+D +DG V+DGRE+ VQ A+YG
Sbjct: 67 DAEDAMDAMDGAVLDGRELRVQMARYG 93
>sp|Q9BRL6|SRSF8_HUMAN Serine/arginine-rich splicing factor 8 OS=Homo sapiens GN=SRSF8
PE=1 SV=1
Length = 282
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 59/87 (67%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ +L V N+T+RT+ D L +FEKYG+V DV+IPR+ T RGFAFVR+
Sbjct: 7 PPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRR 66
Query: 69 EAQKAVDRLDGRVVDGREITVQFAKYG 95
+AQ A +DG +DGRE+ VQ A+YG
Sbjct: 67 DAQDAEAAMDGAELDGRELRVQVARYG 93
>sp|Q09511|RSP4_CAEEL Probable splicing factor, arginine/serine-rich 4
OS=Caenorhabditis elegans GN=rsp-4 PE=3 SV=1
Length = 196
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 59/85 (69%)
Query: 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADE 69
PDI SL + N++++TT +DL FE+YG + DV IPRD+ + S+GF FVR+ +
Sbjct: 13 PDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRD 72
Query: 70 AQKAVDRLDGRVVDGREITVQFAKY 94
A+ A+DR DG++VDGRE+ V AKY
Sbjct: 73 AEHALDRTDGKLVDGRELRVTLAKY 97
>sp|Q9SEU4|SR33_ARATH Serine/arginine-rich splicing factor 33 OS=Arabidopsis thaliana
GN=SR33 PE=1 SV=1
Length = 287
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%)
Query: 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76
SLLV N+ +DL FE++G V D+++PRD TGD RGF FV++ +A A
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96
Query: 77 LDGRVVDGREITVQFAK 93
+DG ++ GRE+TV FA+
Sbjct: 97 MDGYLLLGRELTVVFAE 113
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 70.5 bits (171), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 7/102 (6%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PP+ SL V N+ T ++DL F +YG +VDV++P D T RGFA+V+++
Sbjct: 7 PPNT----SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVR 62
Query: 69 EAQKAVDRLDGRVVDGREITVQFAK---YGPNAEKIQQGRIV 107
+A+ A+ LD + + GR+I +QFA+ PN K ++GR V
Sbjct: 63 DAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 104
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 70.5 bits (171), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 7/102 (6%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PP+ SL V N+ T ++DL F +YG +VDV++P D T RGFA+V+++
Sbjct: 7 PPNT----SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVR 62
Query: 69 EAQKAVDRLDGRVVDGREITVQFAK---YGPNAEKIQQGRIV 107
+A+ A+ LD + + GR+I +QFA+ PN K ++GR V
Sbjct: 63 DAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 104
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa
subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 89/191 (46%), Gaps = 11/191 (5%)
Query: 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQ 71
+D+ + V I + T DL +F +YG+VVDV + RD+ TG S+GFAF+ Y+
Sbjct: 32 FKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTI 91
Query: 72 KAVDRLDGRVVDGREITVQFAKYGPNAEKIQ--------QGRIVESSSKSKGRSRSRSPR 123
AVD L+G V GR + V E+ + R V + + +R S R
Sbjct: 92 LAVDNLNGAKVLGRIVRVDHVSKYKKKEEEDEEELQKKREARGVCYAFQKGECNRGASCR 151
Query: 124 PRYRDEHRDKDYRRRSRSRSRERYDRDRYRSKERDHRRRSRSRSAS--PDRHKNHGRGKY 181
+ DE R+ + S+ S+ R++ DR+ H++ S PDR K +
Sbjct: 152 YSH-DEQRNANTGWGSKEESKARWEHDRHHEPPMSHKKFPSSAGEQRFPDRAKEENKSTG 210
Query: 182 DEERRSRSRSY 192
E + SRS +Y
Sbjct: 211 REGQSSRSEAY 221
>sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis
thaliana GN=At3g47120 PE=2 SV=1
Length = 352
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
+ V I F T DL +F +YG++VDV + RD+ TG S+GFAF+ Y+ AVD L
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 78 DGRVVDGREITVQFA 92
+G +V GR I V
Sbjct: 98 NGALVLGRTIKVDHC 112
>sp|P62997|TRA2B_RAT Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b
PE=1 SV=1
Length = 288
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 3 HFGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFV 62
H G PD L V ++ TT DL +F KYG + DV I D+++ SRGFAFV
Sbjct: 107 HVGNRANPD--PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 164
Query: 63 RYKYADEAQKAVDRLDGRVVDGREITVQFA 92
++ D+A++A +R +G +DGR I V F+
Sbjct: 165 YFENVDDAKEAKERANGMELDGRRIRVDFS 194
>sp|P62996|TRA2B_MOUSE Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1
SV=1
Length = 288
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 3 HFGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFV 62
H G PD L V ++ TT DL +F KYG + DV I D+++ SRGFAFV
Sbjct: 107 HVGNRANPD--PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 164
Query: 63 RYKYADEAQKAVDRLDGRVVDGREITVQFA 92
++ D+A++A +R +G +DGR I V F+
Sbjct: 165 YFENVDDAKEAKERANGMELDGRRIRVDFS 194
>sp|P62995|TRA2B_HUMAN Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1
SV=1
Length = 288
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 3 HFGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFV 62
H G PD L V ++ TT DL +F KYG + DV I D+++ SRGFAFV
Sbjct: 107 HVGNRANPD--PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 164
Query: 63 RYKYADEAQKAVDRLDGRVVDGREITVQFA 92
++ D+A++A +R +G +DGR I V F+
Sbjct: 165 YFENVDDAKEAKERANGMELDGRRIRVDFS 194
>sp|Q3ZBT6|TRA2B_BOVIN Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1
Length = 288
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 3 HFGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFV 62
H G PD L V ++ TT DL +F KYG + DV I D+++ SRGFAFV
Sbjct: 107 HVGNRANPD--PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 164
Query: 63 RYKYADEAQKAVDRLDGRVVDGREITVQFA 92
++ D+A++A +R +G +DGR I V F+
Sbjct: 165 YFENVDDAKEAKERANGMELDGRRIRVDFS 194
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L V + F TT + L +F KYG+V +V + +DR + SRGF FV ++ ++A+ A+ +
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 78 DGRVVDGREITV 89
+G+ VDGR+I V
Sbjct: 68 NGKSVDGRQIRV 79
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L V ++F T L +F KYG++ +V + +DR T SRGF FV ++ D+A+ A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 78 DGRVVDGREITV 89
+G+ VDGR+I V
Sbjct: 68 NGKSVDGRQIRV 79
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L V ++F T L +F KYG++ +V + +DR T SRGF FV ++ D+A+ A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 78 DGRVVDGREITV 89
+G+ VDGR+I V
Sbjct: 68 NGKSVDGRQIRV 79
>sp|Q6CQR6|MRD1_KLULA Multiple RNA-binding domain-containing protein 1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=MRD1 PE=3 SV=1
Length = 878
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%)
Query: 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQ 71
IR+T L + NI + T DD LF YG++ +V I D RTG S+GFA+V +K AD A
Sbjct: 326 IRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAA 385
Query: 72 KAVDRLDGRVVDGREITV 89
A LD ++ GR + +
Sbjct: 386 TAFVELDKQIFQGRLLHI 403
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
++V N+ F T D+F LF +G++ V +P+ + +RGFAFV + EA+ A+D+L
Sbjct: 754 IIVKNLPFEATRKDVFELFSSFGQLKSVRVPK-KFDKSARGFAFVEFLLPKEAENAMDQL 812
Query: 78 DGRVVDGREITVQFAKYGPNAEKIQQ 103
G + GR + ++F + P E ++Q
Sbjct: 813 QGVHLLGRRLVMEFVEQDP--EDVEQ 836
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 6 KSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFI---PRDRRTGD--SRGFA 60
++GP T S+ + N+ F TT+ L F+ + V + P ++ G S GF
Sbjct: 646 QAGP-----TVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFG 700
Query: 61 FVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92
F +K ++A + ++G ++DG ++ ++ +
Sbjct: 701 FAEFKTKEQANAVISAMEGTILDGHKLQLKLS 732
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 52 RTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93
R G+SR FAF+ ++ ++A V+ +G VD +I V AK
Sbjct: 48 RDGESRRFAFIGFRDEEDAFDCVNYFNGTFVDTSKIEVSMAK 89
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 4 FGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVR 63
FG + P + DT L + N++F D +F LF K+G+VV V IP T +GF +V+
Sbjct: 258 FGDT-PSEPSDT--LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQ 314
Query: 64 YKYADEAQKAVDRLDGRVVDGREITVQFAKYGPN 97
+ ++A+KA+D L G +D R + + F+ PN
Sbjct: 315 FSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPN 348
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 36 FEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95
FE G V+ + +R T SRG+ +V ++ A+KA+ + G+ +DGR I +
Sbjct: 188 FEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSK 247
Query: 96 P 96
P
Sbjct: 248 P 248
>sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12
PE=2 SV=1
Length = 261
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PP+ SL + N+ T +DL F +YG +VDV+IP D T RGFA+V+++
Sbjct: 7 PPNT----SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVR 62
Query: 69 EAQKAVDRLDGRVVDGREITVQFAK 93
+A+ A+ L+ + V GR+I +QFA+
Sbjct: 63 DAEDALYNLNRKWVCGRQIEIQFAQ 87
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L V ++F T L +F KYG++ +V + +DR T SRGF FV ++ D+A+ A+ +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 78 DGRVVDGREITV 89
+G+ VDGR+I V
Sbjct: 68 NGKSVDGRQIRV 79
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L V ++F T L +F KYG++ +V + +DR T SRGF FV ++ D+A+ A+ +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 78 DGRVVDGREITV 89
+G+ VDGR+I V
Sbjct: 68 NGKSVDGRQIRV 79
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L V ++F T L +F KYG++ +V + +DR T SRGF FV ++ D+A+ A+ +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 78 DGRVVDGREITV 89
+G+ VDGR+I V
Sbjct: 68 NGKSVDGRQIRV 79
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQ 71
+ D L + + F T D L F KYG++ +V + +DR T SRGF FV ++ D+A+
Sbjct: 1 MSDEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAK 60
Query: 72 KAVDRLDGRVVDGREITV 89
A+ ++G+ VDGR+I V
Sbjct: 61 DAMMAMNGKSVDGRQIRV 78
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQ 71
+ D L + + F T + L +F KYG++ +V + +DR T SRGF FV ++ D+A+
Sbjct: 1 MSDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAK 60
Query: 72 KAVDRLDGRVVDGREITV 89
A+ ++G+ VDGR+I V
Sbjct: 61 DAMMAMNGKAVDGRQIRV 78
>sp|Q54WM4|EIF3G_DICDI Eukaryotic translation initiation factor 3 subunit G
OS=Dictyostelium discoideum GN=eif3G PE=3 SV=1
Length = 233
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADE 69
P D S++V N++ T DL+ LF ++G V V IP+ G S+GFA+V Y + D
Sbjct: 146 PSGSDVPSIMVSNLSQNATEKDLYELFGQFGPVSRVSIPKSME-GSSKGFAYVTYNHLDS 204
Query: 70 AQKAVDRLDGRVVDGREITVQFAK 93
A+KA+ +L+G D ++++FAK
Sbjct: 205 AEKALKQLNGHRYDYLVLSLEFAK 228
>sp|Q6PFR5|TRA2A_MOUSE Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1
SV=1
Length = 281
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 3 HFGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFV 62
H G PD L V ++ TT DL +F +YG + V + D+RTG SRGFAFV
Sbjct: 106 HTGSRANPDPNT--CLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFV 163
Query: 63 RYKYADEAQKAVDRLDGRVVDGREITVQFA 92
++ D++++A++R +G +DGR I V ++
Sbjct: 164 YFERIDDSKEAMERANGMELDGRRIRVDYS 193
>sp|Q13595|TRA2A_HUMAN Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1
SV=1
Length = 282
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 3 HFGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFV 62
H G PD L V ++ TT DL +F +YG + V + D+RTG SRGFAFV
Sbjct: 108 HTGSRANPDPNT--CLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFV 165
Query: 63 RYKYADEAQKAVDRLDGRVVDGREITVQFA 92
++ D++++A++R +G +DGR I V ++
Sbjct: 166 YFERIDDSKEAMERANGMELDGRRIRVDYS 195
>sp|Q8CGC6|RBM28_MOUSE RNA-binding protein 28 OS=Mus musculus GN=Rbm28 PE=1 SV=4
Length = 750
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L++ N++F+ + DDL +F YG V++V IP+ + G RGFAFV++K EA KA+
Sbjct: 116 LIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPK-KPDGKMRGFAFVQFKNLLEAGKALKGA 174
Query: 78 DGRVVDGREITVQFA 92
+ + + GR + V +A
Sbjct: 175 NMKEIKGRTVAVDWA 189
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
P D+ + ++ + N++F + + L + +++G + V + T S+G AF ++ +
Sbjct: 318 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQE 377
Query: 69 EAQKAVDRLD------GRVVDGREITVQFAKYGPNAEKIQQGRI 106
AQK + G +DGR++ V A A K+Q ++
Sbjct: 378 AAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEAAKLQTKKV 421
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 29 ADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88
+D L LF + G V F+ ++ + RGF +V + ++ Q+A+ + +G +I
Sbjct: 17 SDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEIT--TFEGCKID 74
Query: 89 VQFAK 93
V AK
Sbjct: 75 VTVAK 79
>sp|O01671|SXL_MEGSC Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3
Length = 321
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 4 FGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVR 63
F + G +RDT +L V N++ T + L +F KYG++V I RD+ TG RG AF+R
Sbjct: 153 FARPGGEQLRDT-NLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIR 211
Query: 64 YKYADEAQKAVDRLDGRVVDG--REITVQFAK 93
+ +EAQ+A+ L+ + +G + +TV+ A+
Sbjct: 212 FNKREEAQEAISALNNVIPEGGTQPLTVRVAE 243
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 19 LVLNITFRTTAD-DLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L++N + D +L+ LF G + I RD +TG S G+ FV + +A +A++ L
Sbjct: 80 LIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNL 139
Query: 78 DGRVVDGREITVQFAKYGPNAEKI 101
+G V + I V FA+ P E++
Sbjct: 140 NGITVRNKRIKVSFAR--PGGEQL 161
>sp|Q6C747|EIF3G_YARLI Eukaryotic translation initiation factor 3 subunit G OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TIF35 PE=3 SV=1
Length = 294
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%)
Query: 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKA 73
D +L V N++ T DDL +F KYG + V++ +DR TG RGFAFV Y AQ A
Sbjct: 212 DELTLRVTNLSEEATDDDLRRMFGKYGMINRVYVAKDRDTGRPRGFAFVTYTLKSHAQAA 271
Query: 74 VDRLDGRVVDGREITVQFAK 93
++ +DG D + V ++K
Sbjct: 272 LEAMDGHGFDNLIMKVDYSK 291
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L V ++F T L +F KYG++ +V + +DR T SRGF FV ++ ++A+ A+ +
Sbjct: 8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67
Query: 78 DGRVVDGREITV 89
+G+ VDGR+I V
Sbjct: 68 NGKTVDGRQIRV 79
>sp|O97018|SXL_CHRRU Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2
Length = 307
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 4 FGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVR 63
+ + G I+DT +L V N+ T D+L +F KYG +V I RD+ TG RG AFVR
Sbjct: 160 YARPGGESIKDT-NLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVR 218
Query: 64 YKYADEAQKAVDRLDGRVVDG--REITVQFAK 93
+ +EAQ+A+ L+ + +G + +TV+ A+
Sbjct: 219 FNKREEAQEAISALNNVIPEGASQPLTVRLAE 250
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 19 LVLNITFRTTAD-DLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L++N + D +L+ LF G + I +D +TG S G+AFV + +AQ A+ L
Sbjct: 87 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSL 146
Query: 78 DGRVVDGREITVQFAKYGPNAEKIQ 102
+G V + + V +A+ P E I+
Sbjct: 147 NGVTVRNKRLKVSYAR--PGGESIK 169
>sp|O17310|SXL_MUSDO Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1
Length = 324
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 4 FGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVR 63
+ + G I+DT +L V N+ T D+L +F KYG +V I RD+ TG RG AFVR
Sbjct: 177 YARPGGESIKDT-NLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVR 235
Query: 64 YKYADEAQKAVDRLDGRVVDG--REITVQFAK 93
+ +EAQ+A+ L+ + +G + +TV+ A+
Sbjct: 236 FNKREEAQEAISALNNVIPEGASQPLTVRLAE 267
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 19 LVLNITFRTTAD-DLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L++N + D +L+ LF G + I +D +TG S G+AFV + +AQ A+ +
Sbjct: 104 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTV 163
Query: 78 DGRVVDGREITVQFAKYGPNAEKIQ 102
+G V + + V +A+ P E I+
Sbjct: 164 NGITVRNKRLKVSYAR--PGGESIK 186
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L + + + D L F KYG+VVD + DR TG SRGF FV + ++ A A+ L
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 78 DGRVVDGREITVQFAK 93
DGR + GR + V +A
Sbjct: 102 DGRDLHGRVVKVNYAN 117
>sp|O61374|SXL_CERCA Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2
Length = 348
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 4 FGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVR 63
+ + G I+DT +L V N+ T D L +F KYG +V I RD+ TG RG AFVR
Sbjct: 185 YARPGGESIKDT-NLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVR 243
Query: 64 YKYADEAQKAVDRLDGRVVDG--REITVQFAK 93
+ +EAQ+A+ L+ + +G + +TV+ A+
Sbjct: 244 FNKREEAQEAISALNNVIPEGASQPLTVRLAE 275
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 19 LVLNITFRTTAD-DLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L++N + D +L+ LF G + I RD +TG S G+AFV + ++Q+A+ L
Sbjct: 112 LIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSL 171
Query: 78 DGRVVDGREITVQFAKYGPNAEKIQ 102
+G V + + V +A+ P E I+
Sbjct: 172 NGITVRNKRLKVSYAR--PGGESIK 194
>sp|Q9Y388|RBMX2_HUMAN RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1
SV=2
Length = 322
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%)
Query: 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQK 72
+D+ + + + + T D+ +F +YG++V++ + RD++TG S+GF F+ Y+
Sbjct: 33 KDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTIL 92
Query: 73 AVDRLDGRVVDGREITV 89
AVD +G + GR I V
Sbjct: 93 AVDNFNGIKIKGRTIRV 109
>sp|Q29RT0|RBMX_BOVIN RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX
PE=2 SV=1
Length = 396
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L + + T L F KYG++ +V + +DR T SRGFAF+ ++ +A+ AV +
Sbjct: 10 LFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDM 69
Query: 78 DGRVVDGREITVQFA 92
+G+ +DG+ I V A
Sbjct: 70 NGKSLDGKAIKVAQA 84
>sp|Q60990|RBY1B_MOUSE RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus
musculus GN=Rbmy1b PE=2 SV=3
Length = 380
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
+ + + +T L +F ++G V V + RDR T SRGFAF+ ++ +A+ AV +
Sbjct: 10 IFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKNAVKEM 69
Query: 78 DGRVVDGREITVQFAK 93
+G ++DG+ I V+ A+
Sbjct: 70 NGVILDGKRIKVKQAR 85
>sp|O35698|RBY1A_MOUSE RNA-binding motif protein, Y chromosome, family 1 member A1
OS=Mus musculus GN=Rbmy1a1 PE=1 SV=2
Length = 380
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
+ + + +T L +F ++G V V + RDR T SRGFAF+ ++ +A+ AV +
Sbjct: 10 IFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEM 69
Query: 78 DGRVVDGREITVQFAK 93
+G ++DG+ I V+ A+
Sbjct: 70 NGVILDGKRIKVKQAR 85
>sp|Q24668|SXL_DROSU Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2
Length = 354
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 4 FGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVR 63
+ + G I+DT +L V N+ T D L +F KYG +V I RD+ TG RG AFVR
Sbjct: 202 YARPGGESIKDT-NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVR 260
Query: 64 YKYADEAQKAVDRLDGRVVDG--REITVQFAK 93
Y +EAQ+A+ L+ + +G + ++V+ A+
Sbjct: 261 YNKREEAQEAISALNNVIPEGGSQPLSVRLAQ 292
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 11 DIRDTYSLLVLNITFRTTAD-DLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADE 69
D R + + L++N + D +L+ LF G + I RD +TG S G+AFV + +
Sbjct: 121 DQRSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMD 180
Query: 70 AQKAVDRLDGRVVDGREITVQFAKYGPNAEKIQ 102
+Q+A+ L+G V + + V +A+ P E I+
Sbjct: 181 SQRAIKVLNGITVRNKRLKVSYAR--PGGESIK 211
>sp|A6SGN8|EIF3G_BOTFB Eukaryotic translation initiation factor 3 subunit G OS=Botryotinia
fuckeliana (strain B05.10) GN=tif35 PE=3 SV=1
Length = 288
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%)
Query: 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKA 73
D +L V N++ +L +FE++G+V VF+ +DR TG ++GFAF+ ++ +A KA
Sbjct: 206 DLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRETGLAKGFAFISFQERSDAAKA 265
Query: 74 VDRLDGRVVDGREITVQFAK 93
+++DG + V+FAK
Sbjct: 266 CEKMDGYGFKHLILRVEFAK 285
>sp|A7EWN6|EIF3G_SCLS1 Eukaryotic translation initiation factor 3 subunit G OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif35
PE=3 SV=1
Length = 288
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%)
Query: 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKA 73
D +L V N++ +L +FE++G+V VF+ +DR TG ++GFAF+ ++ +A KA
Sbjct: 206 DLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRETGLAKGFAFISFQERSDAAKA 265
Query: 74 VDRLDGRVVDGREITVQFAK 93
+++DG + V+FAK
Sbjct: 266 CEKMDGYGFKHLILRVEFAK 285
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 44/77 (57%)
Query: 20 VLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79
V N+ + D L LF + GKVVD + DR +G SRGF FV Y A+E A++ LDG
Sbjct: 192 VGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDG 251
Query: 80 RVVDGREITVQFAKYGP 96
++GR I V A+ P
Sbjct: 252 VDLNGRAIRVSPAEARP 268
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADE 69
PD++ + V N+ F + L LFE+ G V V + D+ TG SRGF FV +E
Sbjct: 85 PDLK----IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140
Query: 70 AQKAVDRLDGRVVDGREITVQFAKYGPNAEK 100
+ A + +G +DGR + V GP EK
Sbjct: 141 VEAACQQFNGYELDGRALRV---NSGPPPEK 168
>sp|P40565|IST3_YEAST U2 snRNP component IST3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=IST3 PE=1 SV=1
Length = 148
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%)
Query: 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQK 72
+D + + N+ T D+ +F +YG VDV + RD TG+S+GFA+++Y+
Sbjct: 28 KDNAYIYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTIL 87
Query: 73 AVDRLDGRVVDGREITVQFAKYGP 96
AVD L+G + GR + + Y P
Sbjct: 88 AVDNLNGFKIGGRALKIDHTFYRP 111
>sp|Q2H0U6|EIF3G_CHAGB Eukaryotic translation initiation factor 3 subunit G OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=TIF35 PE=3 SV=1
Length = 303
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKA 73
D +L V N++ +L +FE++G+V VF+ +DR TG ++GFAF+ Y D+A KA
Sbjct: 221 DLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGMAKGFAFISYADRDDAVKA 280
Query: 74 VDRLDGRVVDGREITVQFAK 93
+++DG + V+FAK
Sbjct: 281 CNKMDGFGFRHLILRVEFAK 300
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,273,655
Number of Sequences: 539616
Number of extensions: 3022509
Number of successful extensions: 36245
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 675
Number of HSP's that attempted gapping in prelim test: 14982
Number of HSP's gapped (non-prelim): 9586
length of query: 195
length of database: 191,569,459
effective HSP length: 111
effective length of query: 84
effective length of database: 131,672,083
effective search space: 11060454972
effective search space used: 11060454972
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)