BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029320
(195 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NLC8|Y1648_ARATH Uncharacterized protein At1g66480 OS=Arabidopsis thaliana
GN=At1g66480 PE=1 SV=1
Length = 225
Score = 151 bits (382), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/208 (45%), Positives = 130/208 (62%), Gaps = 19/208 (9%)
Query: 1 MKITGETFKIKTPVKAGEVVKDYPGHVLLESESVKHYGVRAKPLGAEQNLEAKRLYFLVE 60
MKI GETF+IKTPV A EV DYPG+VLL+S++VKH+GVR+KPL Q L+ K+ YFLVE
Sbjct: 15 MKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEPNQTLKPKKTYFLVE 74
Query: 61 LPDV--------ARKEIVPRRVRSGINMSAKDRLESLKLSRRSVSDLSILKPVSSSSSSL 112
LP + ++ RRV SGI++ AK+RL+ L LSRR+VSD++I + S
Sbjct: 75 LPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSDVTIGR--SDGGDGF 132
Query: 113 PEE---GAMRLKLKLPKAEVEKLMRESNNDAE-IAEKIRELCMAKQIHWNNNNNNNNGG- 167
E G ++L+LP++++ KLM E+NNDA IAEKI + M + +G
Sbjct: 133 GPELGPGHTSVRLRLPRSQITKLMEENNNDASAIAEKILGIYMERSGELGGGRGGVDGRR 192
Query: 168 --GNQGFKAREKRVSFMPICEGGNQITV 193
G+ KAREK+VSF EGG ++ V
Sbjct: 193 ELGSGEIKAREKQVSFA--GEGGRELPV 218
>sp|Q28XE2|AN32A_DROPS Acidic leucine-rich nuclear phosphoprotein 32 family member A
OS=Drosophila pseudoobscura pseudoobscura GN=Anp32a PE=3
SV=2
Length = 263
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 61 LPDVARKEIVPRRVRSGIN-MSAKDRLESLKLSRRSVSDLSILKPV 105
LP++ + E+ R+ SG+N ++ +L+ L LS + DL LKP+
Sbjct: 59 LPNLKKLELSDNRISSGLNYLTTSPKLQYLNLSGNKIKDLETLKPL 104
>sp|Q9V895|AN32A_DROME Acidic leucine-rich nuclear phosphoprotein 32 family member A
OS=Drosophila melanogaster GN=Anp32a PE=2 SV=1
Length = 261
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 61 LPDVARKEIVPRRVRSGIN-MSAKDRLESLKLSRRSVSDLSILKPV 105
LP++ + E+ R+ SG+N ++ +L+ L LS + DL LKP+
Sbjct: 59 LPNLKKLELSDNRISSGLNYLTTSPKLQYLNLSGNKIKDLETLKPL 104
>sp|A1T100|MNMG_PSYIN tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Psychromonas ingrahamii (strain 37) GN=mnmG PE=3 SV=1
Length = 629
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 126 KAEVEKLMRESNNDAEIAEKIRELCMAKQIHW 157
+AE L+RE N D + EK REL + I W
Sbjct: 432 RAEYRLLLREDNADTRLTEKGRELGLVDDIRW 463
>sp|Q87K98|MNMG_VIBPA tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD
2210633) GN=mnmG PE=3 SV=1
Length = 631
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 126 KAEVEKLMRESNNDAEIAEKIRELCMAKQIHWNNNN 161
+AE L+RE N D + EK REL + + W N
Sbjct: 432 RAEYRLLLREDNADLRLTEKARELGLIDDVRWARFN 467
>sp|A1AVB1|MNMG_RUTMC tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Ruthia magnifica subsp. Calyptogena magnifica GN=mnmG
PE=3 SV=1
Length = 624
Score = 31.6 bits (70), Expect = 3.9, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 43 PLGAEQNLEAKR---LYFLVELP-DVARKEIVPRRVRSGINMSAKDRLESLKLSRRSVSD 98
P G +Q LE K+ LYF ++ +E + + +G+N + L +R+ S
Sbjct: 352 PRGLKQTLEVKKISGLYFAGQINGTTGYEEAAAQGLLAGVNAACAILERDAWLPKRNESY 411
Query: 99 LSILKPVSSSSSSLPEEGAMR-LKLKLPKAEVEKLMRESNNDAEIAEKIRELCMAKQIHW 157
+ ++ L +GA ++ +AE L+RE N D + K R+L + ++ W
Sbjct: 412 IGVM------VDDLITKGANEPYRMFTSRAEYRLLLREDNADERLTPKARDLGLISEVCW 465
Query: 158 NN 159
+
Sbjct: 466 QS 467
>sp|Q3M5D0|RPOB_ANAVT DNA-directed RNA polymerase subunit beta OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=rpoB PE=3 SV=1
Length = 1117
Score = 31.2 bits (69), Expect = 4.2, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 68 EIVPRRVRSGINMSAKDRLESLKLSRRSVSDLSILKPVSSSSSSLPEEGAMRLKLKLPKA 127
E++ +VR G+N RLE + R +VSD +L P S + P+ +K +
Sbjct: 316 ELLQNQVRVGLN-----RLERIIRERMTVSDAEVLTPASLVN---PKPLVAAIKEFFGSS 367
Query: 128 EVEKLMRESNNDAEIAEKIR 147
++ + M ++N AE+ K R
Sbjct: 368 QLSQFMDQTNPLAELTHKRR 387
>sp|C5BKL4|MNMG_TERTT tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Teredinibacter turnerae (strain ATCC 39867 / T7901)
GN=mnmG PE=3 SV=1
Length = 630
Score = 31.2 bits (69), Expect = 4.7, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 126 KAEVEKLMRESNNDAEIAEKIRELCMAKQIHW 157
+AE L+RE N D + EK REL + I W
Sbjct: 432 RAEYRLLLREDNADLRLTEKGRELGLVDDIRW 463
>sp|A5CXV2|MNMG_VESOH tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii
(strain HA) GN=mnmG PE=3 SV=1
Length = 621
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 43 PLGAEQNLEAKR---LYFLVEL-PDVARKEIVPRRVRSGINMSAKDRLESLKLSRRSVSD 98
P G +Q LE K+ LYF ++ +E + + +G+N + + L +R S
Sbjct: 350 PRGLKQTLEVKKISGLYFAGQINGTTGYEEAAAQGLLAGVNAACAILEKDAWLPKRDESY 409
Query: 99 LSIL-KPVSSSSSSLPEEGAMRLKLKLPKAEVEKLMRESNNDAEIAEKIRELCMAKQIHW 157
+ ++ + + ++ P ++ +AE L+RE N D + K +EL + + W
Sbjct: 410 IGVMVDDLITKGTNEP------YRMFTSRAEYRLLLREDNADERLTPKAKELGLISEARW 463
Query: 158 NN 159
+
Sbjct: 464 QS 465
>sp|B7VN07|MNMG_VIBSL tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Vibrio splendidus (strain LGP32) GN=mnmG PE=3 SV=1
Length = 631
Score = 30.4 bits (67), Expect = 8.4, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 126 KAEVEKLMRESNNDAEIAEKIRELCMAKQIHWNNNN 161
+AE L+RE N D + EK REL + W N
Sbjct: 432 RAEYRLLLREDNADIRLTEKSRELGLVDDARWTRFN 467
>sp|Q8K2Z4|CND1_MOUSE Condensin complex subunit 1 OS=Mus musculus GN=Ncapd2 PE=1 SV=2
Length = 1392
Score = 30.0 bits (66), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 85 RLESLKLSRRSVSDLSILKPVSSSSSSLPE-EGAMRLKLKLPKAEVEKLMRESNNDAEIA 143
+L+ ++ RRS + + L P + LPE + ++ LKLP+ E + + ++ E+
Sbjct: 456 KLQEMRAQRRSAAATAALDPEEEWDAMLPELKSTLQQLLKLPQEEGDHQIADAETAEEVK 515
Query: 144 EKIREL 149
+IR+L
Sbjct: 516 GRIRQL 521
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,857,660
Number of Sequences: 539616
Number of extensions: 2882443
Number of successful extensions: 53534
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 45230
Number of HSP's gapped (non-prelim): 7772
length of query: 195
length of database: 191,569,459
effective HSP length: 111
effective length of query: 84
effective length of database: 131,672,083
effective search space: 11060454972
effective search space used: 11060454972
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)