Query 029320
Match_columns 195
No_of_seqs 95 out of 105
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 18:00:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029320.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029320hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ryj_A Unknown; beta/alpha pro 71.0 4.6 0.00016 27.4 3.8 55 1-60 7-65 (70)
2 2iq1_A Protein phosphatase 2C 62.1 9.1 0.00031 31.2 4.5 31 123-153 218-248 (274)
3 2pk0_A Serine/threonine protei 55.8 13 0.00043 29.3 4.2 30 124-153 203-232 (250)
4 2p8e_A PPM1B beta isoform vari 55.1 14 0.00048 30.7 4.6 31 123-153 250-284 (307)
5 4da1_A Protein phosphatase 1K, 53.4 14 0.00046 32.2 4.4 32 123-154 332-363 (389)
6 1tyg_B YJBS; alpha beta barrel 47.5 17 0.0006 26.2 3.5 54 2-60 24-82 (87)
7 2j82_A TPPHA, protein serine-t 47.0 21 0.00073 27.7 4.2 29 124-153 199-227 (240)
8 2xv9_A ABA-1A1 repeat UNIT; li 43.1 25 0.00084 27.8 4.0 28 126-153 26-53 (134)
9 2i0o_A Ser/Thr phosphatase; be 42.5 22 0.00075 29.4 3.8 31 123-153 249-284 (304)
10 1a6q_A Phosphatase 2C; catalyt 42.0 28 0.00095 30.4 4.6 31 123-153 244-278 (382)
11 2jfr_A Ser-Thr phosphatase MSP 41.9 30 0.001 26.8 4.3 29 124-153 192-220 (234)
12 2cu3_A Unknown function protei 40.3 16 0.00054 24.1 2.1 54 1-60 2-59 (64)
13 1f0z_A THis protein; ubiquitin 39.2 13 0.00044 24.6 1.6 54 2-60 4-61 (66)
14 2i44_A Serine-threonine phosph 38.7 32 0.0011 28.5 4.2 30 123-152 271-306 (324)
15 1txo_A Putative bacterial enzy 35.5 39 0.0013 26.2 4.1 30 123-153 193-222 (237)
16 2kl0_A Putative thiamin biosyn 33.1 15 0.00051 25.4 1.2 21 2-23 4-24 (73)
17 2k5p_A THis protein, thiamine- 32.8 16 0.00056 25.5 1.3 23 1-23 3-27 (78)
18 3qn1_B Protein phosphatase 2C 31.2 32 0.0011 29.1 3.1 32 123-154 263-315 (337)
19 3kdj_B Protein phosphatase 2C 27.9 40 0.0014 28.0 3.1 32 123-154 234-292 (316)
20 2isn_A NYSGXRC-8828Z, phosphat 21.9 86 0.0029 27.1 4.2 24 130-153 296-319 (364)
21 1rws_A Hypothetical protein PF 21.8 36 0.0012 23.2 1.4 50 2-56 19-68 (77)
22 2kmm_A Guanosine-3',5'-BIS(dip 21.8 42 0.0014 21.8 1.7 20 4-23 9-28 (73)
23 3bzy_A ESCU; auto cleavage pro 20.9 1E+02 0.0034 20.9 3.5 33 121-153 4-36 (54)
24 2k5j_A Uncharacterized protein 20.8 2.1E+02 0.0073 19.7 5.5 37 118-154 10-50 (80)
No 1
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=70.98 E-value=4.6 Score=27.36 Aligned_cols=55 Identities=9% Similarity=0.177 Sum_probs=37.8
Q ss_pred Cccccce----EEeeccchHhHHhhhCCCceeeccccccccceecccCCCcccccCCceEEEEe
Q 029320 1 MKITGET----FKIKTPVKAGEVVKDYPGHVLLESESVKHYGVRAKPLGAEQNLEAKRLYFLVE 60 (195)
Q Consensus 1 MklDG~V----~E~k~PitA~eVl~d~PgHvL~~S~sv~~~Gvr~kpL~pd~eL~~GklYFLvP 60 (195)
+++||+. .++....|+.+++...- ++...+ ..-+.-..+++|+.|+.|--.-++|
T Consensus 7 i~vNg~~~~~~~~~~~~~tv~~Ll~~l~----~~~~~v-~vavN~~~v~~~~~L~~gD~V~ii~ 65 (70)
T 1ryj_A 7 FTVITDDGKKILESGAPRRIKDVLGELE----IPIETV-VVKKNGQIVIDEEEIFDGDIIEVIR 65 (70)
T ss_dssp EEEEETTEEEEEEESSCCBHHHHHHHTT----CCTTTE-EEEETTEECCTTSBCCTTCEEEEEE
T ss_pred EEEeCccCceeEECCCCCcHHHHHHHhC----CCCCCE-EEEECCEECCCcccCCCCCEEEEEe
Confidence 3589999 99999999999999862 112211 1123345688889999996666664
No 2
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens}
Probab=62.15 E-value=9.1 Score=31.18 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=28.0
Q ss_pred eecHHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 029320 123 KLPKAEVEKLMRESNNDAEIAEKIRELCMAK 153 (195)
Q Consensus 123 rLpKaelekLm~es~d~~eaaekim~l~~~~ 153 (195)
.|+-+|+.+++....|..++|++|++.+..+
T Consensus 218 ~l~~~ei~~~~~~~~~~~~~a~~L~~~A~~~ 248 (274)
T 2iq1_A 218 MVNSQEICDFVNQCHDPNEAAHAVTEQAIQY 248 (274)
T ss_dssp TCCHHHHHHHHHTSSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 3788999999999999999999999998864
No 3
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae}
Probab=55.83 E-value=13 Score=29.32 Aligned_cols=30 Identities=10% Similarity=0.266 Sum_probs=27.5
Q ss_pred ecHHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 029320 124 LPKAEVEKLMRESNNDAEIAEKIRELCMAK 153 (195)
Q Consensus 124 LpKaelekLm~es~d~~eaaekim~l~~~~ 153 (195)
|+.+|+.+++++..+..++|++|++.+..+
T Consensus 203 l~~~~i~~~~~~~~~~~~~a~~L~~~a~~~ 232 (250)
T 2pk0_A 203 LSNADIATVLTQEKTLDDKNQDLITLANHR 232 (250)
T ss_dssp SCHHHHHHHHTSSSCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 688999999999999999999999998865
No 4
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens}
Probab=55.11 E-value=14 Score=30.72 Aligned_cols=31 Identities=13% Similarity=0.368 Sum_probs=27.5
Q ss_pred eecHHHHHHHHHh----cCChHHHHHHHHHHHHhc
Q 029320 123 KLPKAEVEKLMRE----SNNDAEIAEKIRELCMAK 153 (195)
Q Consensus 123 rLpKaelekLm~e----s~d~~eaaekim~l~~~~ 153 (195)
.|+-+|+.+++.+ ..+..++|++|++++..+
T Consensus 250 ~ls~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A~~~ 284 (307)
T 2p8e_A 250 VMSNEELCEYVKSRLEVSDDLENVCNWVVDTCLHK 284 (307)
T ss_dssp TSCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 4789999999988 789999999999999865
No 5
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=53.37 E-value=14 Score=32.24 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=28.9
Q ss_pred eecHHHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 029320 123 KLPKAEVEKLMRESNNDAEIAEKIRELCMAKQ 154 (195)
Q Consensus 123 rLpKaelekLm~es~d~~eaaekim~l~~~~~ 154 (195)
.|+-+|+..++.++.+..++|++|++++..+.
T Consensus 332 ~l~~~ei~~il~~~~~~~~~a~~Lv~~A~~~g 363 (389)
T 4da1_A 332 MVNSQEICDFVNQCHDPNEAAHAVTEQAIQYG 363 (389)
T ss_dssp TCCHHHHHHHHHHSSSHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHHHHHcC
Confidence 37899999999999999999999999998653
No 6
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=47.52 E-value=17 Score=26.16 Aligned_cols=54 Identities=20% Similarity=0.300 Sum_probs=34.5
Q ss_pred ccccceEEeecc-chHhHHhhhCCCceeeccccccccceecccCCC----cccccCCceEEEEe
Q 029320 2 KITGETFKIKTP-VKAGEVVKDYPGHVLLESESVKHYGVRAKPLGA----EQNLEAKRLYFLVE 60 (195)
Q Consensus 2 klDG~V~E~k~P-itA~eVl~d~PgHvL~~S~sv~~~Gvr~kpL~p----d~eL~~GklYFLvP 60 (195)
++||+..++... .|+.++|.+.- +++..+ ..-+.-..++. +..|+.|--.-+||
T Consensus 24 ~vNGe~~el~~~~~Tv~dLL~~L~----~~~~~v-aVavNg~iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 24 QLNGKDVKWKKDTGTIQDLLASYQ----LENKIV-IVERNKEIIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp EETTEEECCSSSCCBHHHHHHHTT----CTTSCC-EEEETTEEECGGGTTTSBCCSSSEEEEEE
T ss_pred EECCEEEECCCCCCcHHHHHHHhC----CCCCCE-EEEECCEECChhhcCCcCCCCCCEEEEEc
Confidence 689999999987 99999999862 122222 11222233443 67888885555554
No 7
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A
Probab=46.97 E-value=21 Score=27.72 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=26.1
Q ss_pred ecHHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 029320 124 LPKAEVEKLMRESNNDAEIAEKIRELCMAK 153 (195)
Q Consensus 124 LpKaelekLm~es~d~~eaaekim~l~~~~ 153 (195)
++.+|+.+++. ..+..++|++|++.+..+
T Consensus 199 l~~~~i~~~l~-~~~~~~~a~~l~~~a~~~ 227 (240)
T 2j82_A 199 LTDDVISIYLS-EPNVQKAAAALVDAAKTH 227 (240)
T ss_dssp SCHHHHHHHHT-CSSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHc-cCCHHHHHHHHHHHHHHc
Confidence 67899999999 889999999999998865
No 8
>2xv9_A ABA-1A1 repeat UNIT; lipid binding protein, fatty acid binding, retinol binding,; NMR {Ascaris suum}
Probab=43.12 E-value=25 Score=27.75 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 029320 126 KAEVEKLMRESNNDAEIAEKIRELCMAK 153 (195)
Q Consensus 126 KaelekLm~es~d~~eaaekim~l~~~~ 153 (195)
|-||.||-++.++.+++=+||++.|-.-
T Consensus 26 k~EI~kMk~~gksk~~v~~KI~efye~l 53 (134)
T 2xv9_A 26 KDELLKMKKDGKAKKELEAKILHYYDEL 53 (134)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 6789999999999999999999999754
No 9
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae}
Probab=42.55 E-value=22 Score=29.41 Aligned_cols=31 Identities=19% Similarity=0.390 Sum_probs=26.0
Q ss_pred eecHHHHHHHHHh-----cCChHHHHHHHHHHHHhc
Q 029320 123 KLPKAEVEKLMRE-----SNNDAEIAEKIRELCMAK 153 (195)
Q Consensus 123 rLpKaelekLm~e-----s~d~~eaaekim~l~~~~ 153 (195)
.|+-+|+.+++.+ ..+..++|++|++.|.++
T Consensus 249 ~l~~~ei~~~v~~~~~~~~~~~~~~a~~L~~~a~~~ 284 (304)
T 2i0o_A 249 FMTSEQVVQFVQERINKPGMKLSKICEELFDHCLAP 284 (304)
T ss_dssp TCCHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Confidence 4788999999987 688999999999999875
No 10
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Probab=42.01 E-value=28 Score=30.42 Aligned_cols=31 Identities=13% Similarity=0.413 Sum_probs=27.5
Q ss_pred eecHHHHHHHHHh----cCChHHHHHHHHHHHHhc
Q 029320 123 KLPKAEVEKLMRE----SNNDAEIAEKIRELCMAK 153 (195)
Q Consensus 123 rLpKaelekLm~e----s~d~~eaaekim~l~~~~ 153 (195)
.|+-+|+.+++.. ..|..++|++|++.|..+
T Consensus 244 ~ls~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A~~~ 278 (382)
T 1a6q_A 244 VMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYK 278 (382)
T ss_dssp TSCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 3789999999987 689999999999999875
No 11
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A
Probab=41.90 E-value=30 Score=26.82 Aligned_cols=29 Identities=10% Similarity=0.066 Sum_probs=26.2
Q ss_pred ecHHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 029320 124 LPKAEVEKLMRESNNDAEIAEKIRELCMAK 153 (195)
Q Consensus 124 LpKaelekLm~es~d~~eaaekim~l~~~~ 153 (195)
++.+++.+++ +..+..++|++|++.+..+
T Consensus 192 ~~~~~i~~~~-~~~~~~~~a~~l~~~a~~~ 220 (234)
T 2jfr_A 192 ADEALIVDAA-TSPDPQVAVRRLVEVANDA 220 (234)
T ss_dssp SCHHHHHHHH-TCSSHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHH-ccCCHHHHHHHHHHHHHHc
Confidence 6889999999 8889999999999998865
No 12
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=40.30 E-value=16 Score=24.07 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=33.3
Q ss_pred CccccceEEeeccchHhHHhhhCCCceeeccccccccceecccCCC----cccccCCceEEEEe
Q 029320 1 MKITGETFKIKTPVKAGEVVKDYPGHVLLESESVKHYGVRAKPLGA----EQNLEAKRLYFLVE 60 (195)
Q Consensus 1 MklDG~V~E~k~PitA~eVl~d~PgHvL~~S~sv~~~Gvr~kpL~p----d~eL~~GklYFLvP 60 (195)
+++||+..++ ...|+.+++...- ++...+ ..-+.-..+++ +..|+.|--.-++|
T Consensus 2 i~vNg~~~~~-~~~tv~~ll~~l~----~~~~~v-~vavN~~~v~~~~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 2 VWLNGEPRPL-EGKTLKEVLEEMG----VELKGV-AVLLNEEAFLGLEVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp EEETTEEECC-TTCCHHHHHHHHT----BCGGGE-EEEETTEEEEGGGCCCCCCCTTCEEEEEE
T ss_pred EEECCEEEEc-CCCcHHHHHHHcC----CCCCcE-EEEECCEECCccccCCcCCCCCCEEEEEe
Confidence 4789999999 8999999998762 112211 11122233443 47888886555554
No 13
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=39.24 E-value=13 Score=24.59 Aligned_cols=54 Identities=4% Similarity=0.105 Sum_probs=33.7
Q ss_pred ccccceEEeeccchHhHHhhhCCCceeeccccccccceecccCCC----cccccCCceEEEEe
Q 029320 2 KITGETFKIKTPVKAGEVVKDYPGHVLLESESVKHYGVRAKPLGA----EQNLEAKRLYFLVE 60 (195)
Q Consensus 2 klDG~V~E~k~PitA~eVl~d~PgHvL~~S~sv~~~Gvr~kpL~p----d~eL~~GklYFLvP 60 (195)
++||+..++....|+.+++...- ++...+ ..-+.-..+++ +..|+.|--.-++|
T Consensus 4 ~vNg~~~~~~~~~tv~~ll~~l~----~~~~~v-~vavN~~~v~~~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 4 LFNDQAMQCAAGQTVHELLEQLD----QRQAGA-ALAINQQIVPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp EESSCEECCCTTCCHHHHHHHHT----CCCSSE-EEEETTEEECHHHHTTCCCCTTEEECEEE
T ss_pred EECCEEEEcCCCCcHHHHHHHcC----CCCCCE-EEEECCEECCchhcCCcCCCCCCEEEEEe
Confidence 68999999999999999998752 111111 11122234444 67888885444454
No 14
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii}
Probab=38.69 E-value=32 Score=28.47 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=26.2
Q ss_pred eecHHHHHHHHHhc----CChHH--HHHHHHHHHHh
Q 029320 123 KLPKAEVEKLMRES----NNDAE--IAEKIRELCMA 152 (195)
Q Consensus 123 rLpKaelekLm~es----~d~~e--aaekim~l~~~ 152 (195)
.|+-+|+.+++.+. .+..+ +|++|++++..
T Consensus 271 ~ls~~ei~~~v~~~~~~~~~~~~~~~a~~L~~~A~~ 306 (324)
T 2i44_A 271 VMSAAQAVEIAMQARQEGRNPAQALVEMTLAEQQSR 306 (324)
T ss_dssp TCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 37899999999876 78999 99999999875
No 15
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A
Probab=35.55 E-value=39 Score=26.21 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=25.5
Q ss_pred eecHHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 029320 123 KLPKAEVEKLMRESNNDAEIAEKIRELCMAK 153 (195)
Q Consensus 123 rLpKaelekLm~es~d~~eaaekim~l~~~~ 153 (195)
.|+-+|+.++++. .+..++|++|++.+..+
T Consensus 193 ~l~~~~i~~~~~~-~~~~~~a~~L~~~a~~~ 222 (237)
T 1txo_A 193 PVSDETILEALQI-PEVAESAHRLIELALRG 222 (237)
T ss_dssp TSCHHHHHHHHTS-SSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhc-CCHHHHHHHHHHHHHHc
Confidence 3678999999975 58999999999998865
No 16
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=33.12 E-value=15 Score=25.36 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=19.2
Q ss_pred ccccceEEeeccchHhHHhhhC
Q 029320 2 KITGETFKIKTPVKAGEVVKDY 23 (195)
Q Consensus 2 klDG~V~E~k~PitA~eVl~d~ 23 (195)
++||+..++ .+.|+.++|.+.
T Consensus 4 ~vNG~~~e~-~~~Tl~~LL~~l 24 (73)
T 2kl0_A 4 TINGEQREV-QSASVAALMTEL 24 (73)
T ss_dssp EETTEEECC-CCSBHHHHHHHT
T ss_pred EECCEEEEc-CCCcHHHHHHHc
Confidence 689999999 899999999975
No 17
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=32.75 E-value=16 Score=25.54 Aligned_cols=23 Identities=9% Similarity=0.352 Sum_probs=20.0
Q ss_pred CccccceEEee--ccchHhHHhhhC
Q 029320 1 MKITGETFKIK--TPVKAGEVVKDY 23 (195)
Q Consensus 1 MklDG~V~E~k--~PitA~eVl~d~ 23 (195)
+++||+..++. .+.|+.++|.+.
T Consensus 3 I~vNGe~~e~~~~~~~Tl~~LL~~l 27 (78)
T 2k5p_A 3 LTVNGKPSTVDGAESLNVTELLSAL 27 (78)
T ss_dssp EEETTEEEECSSCSCEEHHHHHHHH
T ss_pred EEECCEEEEcCCCCCCcHHHHHHHc
Confidence 36899999999 779999999864
No 18
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B*
Probab=31.16 E-value=32 Score=29.10 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=26.5
Q ss_pred eecHHHHHHHHHh---------------------cCChHHHHHHHHHHHHhcc
Q 029320 123 KLPKAEVEKLMRE---------------------SNNDAEIAEKIRELCMAKQ 154 (195)
Q Consensus 123 rLpKaelekLm~e---------------------s~d~~eaaekim~l~~~~~ 154 (195)
.|+-+|+..++++ ..+..++|+++++++..+.
T Consensus 263 ~l~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Lv~~A~~~g 315 (337)
T 3qn1_B 263 VMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLALQKG 315 (337)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHCCC----CCSSCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhhhhccccccccccccccccChhHHHHHHHHHHHHHHcC
Confidence 4789999999986 4556789999999998763
No 19
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B*
Probab=27.88 E-value=40 Score=28.02 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=25.6
Q ss_pred eecHHHHHHHHHh---------------------------cCChHHHHHHHHHHHHhcc
Q 029320 123 KLPKAEVEKLMRE---------------------------SNNDAEIAEKIRELCMAKQ 154 (195)
Q Consensus 123 rLpKaelekLm~e---------------------------s~d~~eaaekim~l~~~~~ 154 (195)
.|+-+|+..++++ ..+..++|+++++++..+.
T Consensus 234 ~l~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~Lv~~A~~~g 292 (316)
T 3kdj_B 234 VMTDEEACEMARKRILLWHKKNAVAGGASLLADERRKEGKDPAAMSAAEYLSKLAIQRG 292 (316)
T ss_dssp SSCHHHHHHHHHHHHHHHTTC-----------------CCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhhhhccccccccccccccccccccccCchHHHHHHHHHHHHHHcC
Confidence 4789999999986 2356789999999988753
No 20
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii}
Probab=21.88 E-value=86 Score=27.05 Aligned_cols=24 Identities=13% Similarity=0.295 Sum_probs=19.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhc
Q 029320 130 EKLMRESNNDAEIAEKIRELCMAK 153 (195)
Q Consensus 130 ekLm~es~d~~eaaekim~l~~~~ 153 (195)
+.+++...+..++|++|++++..+
T Consensus 296 ~~~~~~~~~~~~~a~~Lv~~A~~~ 319 (364)
T 2isn_A 296 AEMQRSKGDLEEVAARVMDYAYDM 319 (364)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred HHHhhcCCCHHHHHHHHHHHHHhc
Confidence 445567789999999999999876
No 21
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=21.84 E-value=36 Score=23.17 Aligned_cols=50 Identities=10% Similarity=0.180 Sum_probs=33.4
Q ss_pred ccccceEEeeccchHhHHhhhCCCceeeccccccccceecccCCCcccccCCceE
Q 029320 2 KITGETFKIKTPVKAGEVVKDYPGHVLLESESVKHYGVRAKPLGAEQNLEAKRLY 56 (195)
Q Consensus 2 klDG~V~E~k~PitA~eVl~d~PgHvL~~S~sv~~~Gvr~kpL~pd~eL~~GklY 56 (195)
.+||...++....|+.+++...- ++...+ ...+.-..++.|..|+.|--.
T Consensus 19 ~~n~~~~~~~~~~Tv~dLl~~L~----~~~~~v-~VavNg~~v~~~~~L~dGD~V 68 (77)
T 1rws_A 19 RNIEKEIEWREGMKVRDILRAVG----FNTESA-IAKVNGKVVLEDDEVKDGDFV 68 (77)
T ss_dssp CCCCCCCCCCSSCCHHHHHHTTT----CSSCSS-CEEETTEEECSSSCCCSSCCC
T ss_pred ccCCEEEECCCCCcHHHHHHHhC----CCCcCE-EEEECCEECCCCCCcCCCCEE
Confidence 57899999988899999998752 112222 223344566778888888433
No 22
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=21.79 E-value=42 Score=21.81 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=18.6
Q ss_pred ccceEEeeccchHhHHhhhC
Q 029320 4 TGETFKIKTPVKAGEVVKDY 23 (195)
Q Consensus 4 DG~V~E~k~PitA~eVl~d~ 23 (195)
||.+.+|....|+.+++...
T Consensus 9 ~g~~~~~~~g~T~~dla~~i 28 (73)
T 2kmm_A 9 KGEIKRLPQGATALDFAYSL 28 (73)
T ss_dssp TCCEEEECTTCBHHHHHHHH
T ss_pred CCCEEEcCCCCcHHHHHHHH
Confidence 99999999999999999875
No 23
>3bzy_A ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3bzl_A 3bzv_A 3bzx_A 3bzo_A 3bzz_A 3c03_B 3c00_A
Probab=20.92 E-value=1e+02 Score=20.87 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=29.3
Q ss_pred EEeecHHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 029320 121 KLKLPKAEVEKLMRESNNDAEIAEKIRELCMAK 153 (195)
Q Consensus 121 KmrLpKaelekLm~es~d~~eaaekim~l~~~~ 153 (195)
+|+.+|+||..=++++.-.-++-.+|-++...-
T Consensus 4 ~lkMskqEvK~E~Ke~EGdP~iK~r~R~~~re~ 36 (54)
T 3bzy_A 4 MASMSKDEVKREAKDTDGNPEIKGERRRLHSEI 36 (54)
T ss_pred hcCCCHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 578899999999999999999999999887653
No 24
>2k5j_A Uncharacterized protein YIIF; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri 5 str}
Probab=20.79 E-value=2.1e+02 Score=19.69 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=31.6
Q ss_pred eEEEEeecHHHHHHHH----HhcCChHHHHHHHHHHHHhcc
Q 029320 118 MRLKLKLPKAEVEKLM----RESNNDAEIAEKIRELCMAKQ 154 (195)
Q Consensus 118 vRvKmrLpKaelekLm----~es~d~~eaaekim~l~~~~~ 154 (195)
.|+-++||...+++|= +++.+-+|+....+..|..+.
T Consensus 10 ~risI~Lpdel~~~Ld~la~~~g~srselireAi~~yl~~~ 50 (80)
T 2k5j_A 10 GRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQ 50 (80)
T ss_dssp CEEEEEECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 5999999999888886 477899999988899898764
Done!