Query 029322
Match_columns 195
No_of_seqs 103 out of 1117
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 11:03:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029322.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029322hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3200 Uncharacterized conser 100.0 7.7E-42 1.7E-46 263.1 13.5 176 6-193 2-177 (224)
2 PF13532 2OG-FeII_Oxy_2: 2OG-F 100.0 1.9E-32 4.1E-37 218.4 11.7 151 17-194 1-175 (194)
3 TIGR00568 alkb DNA alkylation 100.0 1.2E-30 2.7E-35 204.6 13.9 145 21-190 1-169 (169)
4 PRK15401 alpha-ketoglutarate-d 100.0 5.8E-30 1.3E-34 206.7 16.5 156 13-194 15-194 (213)
5 COG3145 AlkB Alkylated DNA rep 99.9 1E-25 2.2E-30 179.0 12.3 154 13-194 12-185 (194)
6 KOG3959 2-Oxoglutarate- and ir 99.9 2E-23 4.4E-28 168.0 4.0 175 14-192 70-262 (306)
7 KOG4176 Uncharacterized conser 99.9 1.8E-21 3.9E-26 165.6 11.2 164 11-193 122-292 (323)
8 PRK05467 Fe(II)-dependent oxyg 98.2 5.3E-05 1.1E-09 62.3 13.1 154 18-194 2-165 (226)
9 smart00702 P4Hc Prolyl 4-hydro 98.2 0.00019 4.2E-09 56.2 15.4 158 16-194 1-166 (178)
10 KOG2731 DNA alkylation damage 98.1 2.2E-06 4.7E-11 73.7 4.0 100 68-192 190-293 (378)
11 PF03171 2OG-FeII_Oxy: 2OG-Fe( 96.9 0.00061 1.3E-08 48.0 2.5 79 92-193 1-84 (98)
12 COG3128 PiuC Uncharacterized i 96.8 0.016 3.5E-07 46.2 9.8 154 17-194 3-168 (229)
13 PLN00052 prolyl 4-hydroxylase; 96.5 0.022 4.7E-07 49.1 9.0 97 15-113 53-152 (310)
14 PF13640 2OG-FeII_Oxy_3: 2OG-F 95.7 0.017 3.8E-07 40.6 4.3 20 95-114 1-20 (100)
15 PF12933 FTO_NTD: FTO catalyti 95.7 0.016 3.5E-07 47.8 4.4 83 91-191 137-237 (253)
16 PF09859 Oxygenase-NA: Oxygena 94.1 0.31 6.8E-06 38.1 7.4 107 68-194 41-159 (173)
17 KOG1591 Prolyl 4-hydroxylase a 93.3 0.39 8.4E-06 41.0 7.3 93 14-113 95-196 (289)
18 PF08007 Cupin_4: Cupin superf 77.6 7.5 0.00016 33.4 6.3 74 93-178 112-188 (319)
19 PF12851 Tet_JBP: Oxygenase do 65.6 15 0.00031 28.8 4.9 28 164-194 126-153 (171)
20 PRK10646 ADP-binding protein; 58.8 16 0.00035 28.2 3.9 38 76-113 43-82 (153)
21 TIGR01762 chlorin-enz chlorina 55.3 27 0.00059 29.6 5.1 24 16-39 14-37 (288)
22 PLN02904 oxidoreductase 52.9 76 0.0016 27.8 7.6 28 162-189 252-279 (357)
23 TIGR02408 ectoine_ThpD ectoine 52.0 73 0.0016 26.6 7.2 25 16-40 28-52 (277)
24 KOG2731 DNA alkylation damage 48.4 8.9 0.00019 33.7 1.1 44 91-135 313-362 (378)
25 TIGR00150 HI0065_YjeE ATPase, 46.5 31 0.00068 25.9 3.7 37 77-113 38-76 (133)
26 PLN02515 naringenin,2-oxogluta 46.4 97 0.0021 27.1 7.3 26 164-189 243-268 (358)
27 PF02367 UPF0079: Uncharacteri 46.3 8.4 0.00018 28.6 0.5 37 77-113 31-69 (123)
28 COG3826 Uncharacterized protei 44.8 1.5E+02 0.0033 23.9 7.4 24 95-118 126-151 (236)
29 PLN02947 oxidoreductase 43.3 1.4E+02 0.003 26.4 7.8 28 162-189 269-296 (374)
30 PLN02750 oxidoreductase, 2OG-F 41.0 1.7E+02 0.0036 25.4 7.9 28 162-189 239-266 (345)
31 PLN03001 oxidoreductase, 2OG-F 40.0 1.1E+02 0.0024 25.5 6.4 28 162-189 160-187 (262)
32 PLN02912 oxidoreductase, 2OG-F 39.8 1.5E+02 0.0032 25.9 7.4 28 162-189 241-268 (348)
33 PLN02365 2-oxoglutarate-depend 38.6 62 0.0013 27.5 4.8 27 163-189 197-223 (300)
34 PTZ00273 oxidase reductase; Pr 38.6 1.5E+02 0.0032 25.3 7.2 28 162-189 223-250 (320)
35 PLN02984 oxidoreductase, 2OG-F 35.1 2.5E+02 0.0053 24.4 8.0 27 162-188 244-270 (341)
36 PLN02639 oxidoreductase, 2OG-F 33.8 1.2E+02 0.0027 26.1 5.9 29 162-190 235-263 (337)
37 PF05118 Asp_Arg_Hydrox: Aspar 32.9 53 0.0011 25.3 3.2 44 91-134 78-123 (163)
38 PF08943 CsiD: CsiD; InterPro 32.6 30 0.00065 29.3 1.8 28 161-191 250-277 (297)
39 PF13661 2OG-FeII_Oxy_4: 2OG-F 32.5 28 0.0006 22.7 1.3 20 95-114 13-32 (70)
40 PLN02758 oxidoreductase, 2OG-F 32.3 84 0.0018 27.5 4.7 28 162-189 257-284 (361)
41 PLN02216 protein SRG1 31.6 2.2E+02 0.0048 24.9 7.2 27 162-188 255-281 (357)
42 PLN02276 gibberellin 20-oxidas 31.5 2.5E+02 0.0055 24.5 7.6 29 162-190 250-278 (361)
43 PLN02254 gibberellin 3-beta-di 30.6 91 0.002 27.3 4.6 27 163-189 256-282 (358)
44 PF05721 PhyH: Phytanoyl-CoA d 30.0 61 0.0013 24.5 3.2 23 17-39 5-27 (211)
45 PF02832 Flavi_glycop_C: Flavi 27.6 44 0.00095 23.8 1.7 24 163-186 68-95 (97)
46 COG0802 Predicted ATPase or ki 26.7 80 0.0017 24.3 3.1 38 75-112 39-78 (149)
47 PLN02156 gibberellin 2-beta-di 26.3 2E+02 0.0042 25.0 5.9 29 162-190 225-253 (335)
48 PLN02485 oxidoreductase 25.1 2.5E+02 0.0054 24.1 6.3 28 162-189 234-261 (329)
49 PRK02963 carbon starvation ind 22.1 73 0.0016 27.6 2.4 25 162-189 263-287 (316)
50 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 20.8 90 0.0019 24.8 2.5 28 164-194 151-178 (195)
No 1
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.7e-42 Score=263.15 Aligned_cols=176 Identities=49% Similarity=0.831 Sum_probs=156.0
Q ss_pred cccccccCCCCcEEEeCCCCCHHHHHHHHHHHHcCCCCCceeccCcceeecCcccccCCCCCCCCchhhHHHHHHHHHhc
Q 029322 6 NFNQFTVGNLPTLMYVADFITNIEETQLLNNIYGAPLSKWKSLKNRRLQNWGGVVHEKGLLPQDLPPWLTMITRRIYEKS 85 (195)
Q Consensus 6 ~~~~~~~~~ipGl~~ipdfis~~e~~~L~~~l~~~p~~~w~~~~~rr~~~~G~~~~~~~~~~~~~P~~l~~l~~ri~~~~ 85 (195)
+++.|+|+..|-..|||+||+++||+.++++|...|.++|+++.+||+|+||+.++.+|++++.+|+||+.+++.|. ..
T Consensus 2 ~~~~F~V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~NRRLqNyGGvvh~~glipeelP~wLq~~v~kin-nl 80 (224)
T KOG3200|consen 2 NIKKFIVKSAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLANRRLQNYGGVVHKTGLIPEELPPWLQYYVDKIN-NL 80 (224)
T ss_pred CcceeEecccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHHhhhhhhcCCccccCCcCccccCHHHHHHHHHhh-cc
Confidence 57889999999999999999999999999999999989999999999999999999999999999999999999998 58
Q ss_pred CCCCCCcceEEeeeeCCCCCccccCCCCCCCCeEEEEecCCCeEEEeecCCCCCCCCCCCCCCCCcccccccccCCCCcc
Q 029322 86 GLFPSAINHILINEYQPNQGIMPHQDGPAYFPVVAILSLGSPVVMDFTPHPKLKNNIIPESSNGDAFVTEKNEWKDSHHP 165 (195)
Q Consensus 86 gl~~~~~n~~liN~Y~~G~~I~~H~D~~~~~p~Ia~lSLgs~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (195)
|+|+...||+|||+|.||+||+||.|++.|.|+|+++||||+++|.|....++..+ +.-.+.++ -....
T Consensus 81 glF~s~~NHVLVNeY~pgqGImPHtDGPaf~piVstiSlGsh~vldf~~p~r~e~~-d~te~~dq----------p~R~~ 149 (224)
T KOG3200|consen 81 GLFKSPANHVLVNEYLPGQGIMPHTDGPAFHPIVSTISLGSHTVLDFYDPVRQEVN-DGTESKDQ----------PLRYL 149 (224)
T ss_pred cccCCCcceeEeecccCCCCcCcCCCCCcccceEEEEecCCceEEecccccccccC-CccccCCC----------Cccce
Confidence 99999999999999999999999999999999999999999999999886532211 11111111 13456
Q ss_pred EEEEeCCCeEEeeccccccccccCcCcc
Q 029322 166 FSILLMPRSLLIFKDDAYSGKCLYIDVL 193 (195)
Q Consensus 166 ~~i~L~~gSLlIm~g~ar~~w~H~Ip~v 193 (195)
+++.|+++||+|+.++|+.++.|||..-
T Consensus 150 fsllleprslLilkd~aYtd~LHgIs~s 177 (224)
T KOG3200|consen 150 FSLLLEPRSLLILKDDAYTDFLHGISDS 177 (224)
T ss_pred eeeeeccceEEEEcCcHHHHHHhhcccC
Confidence 7899999999999999999999999753
No 2
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=99.98 E-value=1.9e-32 Score=218.40 Aligned_cols=151 Identities=30% Similarity=0.483 Sum_probs=106.3
Q ss_pred cEEEeCCCCCHHHHHHHHHHHHcCCCCCceecc--------Ccce----eec---CcccccCCC------CCCCCchhhH
Q 029322 17 TLMYVADFITNIEETQLLNNIYGAPLSKWKSLK--------NRRL----QNW---GGVVHEKGL------LPQDLPPWLT 75 (195)
Q Consensus 17 Gl~~ipdfis~~e~~~L~~~l~~~p~~~w~~~~--------~rr~----~~~---G~~~~~~~~------~~~~~P~~l~ 75 (195)
|++|+|||||++|+++|++++.+. .+|.+.. .++. ..| |..|+|++. ...++|+++.
T Consensus 1 G~~~~~~fls~~e~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p~~l~ 78 (194)
T PF13532_consen 1 GLYYIPNFLSEEEAAELLNELRES--APFRQPTYPMGKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFPEWLS 78 (194)
T ss_dssp -EEEETTSS-HHHHHHHHHHHHHH--S--B-GCCCCCCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHhh--CCCcCCeEcCCCEEccceecceeeEEECCCCCeEcCCccccCCCCCCCccHHHH
Confidence 899999999999999999999953 2243211 1111 122 234555542 2468899999
Q ss_pred HHHHHHHHhcCCC-CCCcceEEeeeeCCCCCccccCCCCCC--CCeEEEEecCCCeEEEeecCCCCCCCCCCCCCCCCcc
Q 029322 76 MITRRIYEKSGLF-PSAINHILINEYQPNQGIMPHQDGPAY--FPVVAILSLGSPVVMDFTPHPKLKNNIIPESSNGDAF 152 (195)
Q Consensus 76 ~l~~ri~~~~gl~-~~~~n~~liN~Y~~G~~I~~H~D~~~~--~p~Ia~lSLgs~~~~~f~~~~~~~~~~~~~~~~~~~~ 152 (195)
.+++++.+..+.. ...||+|+||+|.+|++|++|+|+..+ .+.|++||||++|+|.|+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~~~~~~I~slSLG~~~~~~f~~~~---------------- 142 (194)
T PF13532_consen 79 RLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDEEYGFGPPIASLSLGSSRVFRFRNKS---------------- 142 (194)
T ss_dssp HHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---TTC-CCSEEEEEEEES-EEEEEEECG----------------
T ss_pred HHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcccccCCCcEEEEEEccCceEEEeecc----------------
Confidence 9999998755522 368999999999999999999999966 499999999999999998753
Q ss_pred cccccccCCCCccEEEEeCCCeEEeeccccccccccCcCccc
Q 029322 153 VTEKNEWKDSHHPFSILLMPRSLLIFKDDAYSGKCLYIDVLV 194 (195)
Q Consensus 153 ~~~~~~~~~~~~~~~i~L~~gSLlIm~g~ar~~w~H~Ip~v~ 194 (195)
+....+++.|++||||||+|++|+.| |+|+++.
T Consensus 143 --------~~~~~~~~~L~~gsl~vm~g~~r~~~-H~I~~~~ 175 (194)
T PF13532_consen 143 --------DDDEPIEVPLPPGSLLVMSGEARYDW-HGIPPVK 175 (194)
T ss_dssp --------GTS-EEEEEE-TTEEEEEETTHHHHE-EEE-S-S
T ss_pred --------CCCccEEEEcCCCCEEEeChHHhhhe-eEccccc
Confidence 24688999999999999999999999 9999875
No 3
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=99.97 E-value=1.2e-30 Score=204.61 Aligned_cols=145 Identities=17% Similarity=0.220 Sum_probs=115.8
Q ss_pred eCCCCCHHHHHHHHHHHHcCC-CCCceecc---C-----ccee----ec---CcccccCCCC-----C-CCCchhhHHHH
Q 029322 21 VADFITNIEETQLLNNIYGAP-LSKWKSLK---N-----RRLQ----NW---GGVVHEKGLL-----P-QDLPPWLTMIT 78 (195)
Q Consensus 21 ipdfis~~e~~~L~~~l~~~p-~~~w~~~~---~-----rr~~----~~---G~~~~~~~~~-----~-~~~P~~l~~l~ 78 (195)
+.+++...++..|.+++.+.. ..+|++.. + +|++ .| |+.|+|++.. + .+||++|..|.
T Consensus 1 l~~~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~gk~~~~pr~~~~~l~W~~~g~~Y~ys~~~~~~~~~~p~~P~~L~~L~ 80 (169)
T TIGR00568 1 LKRYFAFNAQEQLIRDINDVASQDPFRQYVTPGGYTMSVAMTNLGKLGWTTHGQGYLYSPKDPQTNKPWPAMPQDLGDLC 80 (169)
T ss_pred CCCccChHHHHHHHHHHHHHhhcCCCcCeEecCCeEeeehhhhcccceEEcCCCcccCCCcccCCCCCCCCCCHHHHHHH
Confidence 357888889999999887632 13577521 1 3443 25 6788887641 2 34889999999
Q ss_pred HHHHHhcCCCCCCcceEEeeeeCCCCCccccCCCCCCC--CeEEEEecCCCeEEEeecCCCCCCCCCCCCCCCCcccccc
Q 029322 79 RRIYEKSGLFPSAINHILINEYQPNQGIMPHQDGPAYF--PVVAILSLGSPVVMDFTPHPKLKNNIIPESSNGDAFVTEK 156 (195)
Q Consensus 79 ~ri~~~~gl~~~~~n~~liN~Y~~G~~I~~H~D~~~~~--p~Ia~lSLgs~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
+++++..|..+..||+||||+|++|++|+||+|..+.. +.|+|||||++|+|.|+++.
T Consensus 81 ~~v~~~~g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~e~~~~~pI~SvSLG~~r~F~~~~~~-------------------- 140 (169)
T TIGR00568 81 ERVATAAGFPDFQPDACLVNRYAPGATLSLHQDRDEPDLRAPLLSVSLGLPAIFLIGGLK-------------------- 140 (169)
T ss_pred HHHHHHhCCCCCCCCEEEEEeecCCCccccccccccccCCCCEEEEeCCCCEEEEecCCc--------------------
Confidence 99988778666799999999999999999999986654 89999999999999998864
Q ss_pred cccCCCCccEEEEeCCCeEEeeccccccccccCc
Q 029322 157 NEWKDSHHPFSILLMPRSLLIFKDDAYSGKCLYI 190 (195)
Q Consensus 157 ~~~~~~~~~~~i~L~~gSLlIm~g~ar~~w~H~I 190 (195)
....+.+|.|++||||||+|++|+.| |||
T Consensus 141 ----~~~~~~~l~L~sGsllvM~G~sR~~~-Hgv 169 (169)
T TIGR00568 141 ----RNDPPKRLRLHSGDVVIMGGESRLAF-HGV 169 (169)
T ss_pred ----CCCceEEEEeCCCCEEEECCchhccc-cCC
Confidence 24457899999999999999999966 997
No 4
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=99.97 E-value=5.8e-30 Score=206.73 Aligned_cols=156 Identities=19% Similarity=0.220 Sum_probs=119.7
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHHHHcC-CCCCceecc-------Cccee-----ec-C--cccccCCC------CCCCC
Q 029322 13 GNLPTLMYVADFITNIEETQLLNNIYGA-PLSKWKSLK-------NRRLQ-----NW-G--GVVHEKGL------LPQDL 70 (195)
Q Consensus 13 ~~ipGl~~ipdfis~~e~~~L~~~l~~~-p~~~w~~~~-------~rr~~-----~~-G--~~~~~~~~------~~~~~ 70 (195)
...||..++++|. .++++.|++.|.+. ...+|.+.. .-|++ .| | ..|.|++. ...++
T Consensus 15 ~~~~g~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~~~~~gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~pwp~~ 93 (213)
T PRK15401 15 PLAPGAVLLRGFA-LAAAEALLAAIEAVAAQAPFRHMVTPGGYTMSVAMTNCGALGWVTDRRGYRYSPIDPLTGKPWPAM 93 (213)
T ss_pred ecCCCcEEeCCCC-HHHHHHHHHHHHHHHhcCCccceecCCCCcceeEEeccccceEecCCCCcccCCcCCCCCCCCCCc
Confidence 3566999999995 88999999998871 013566421 12344 23 1 23555543 13456
Q ss_pred chhhHHHHHHHHHhcCCCCCCcceEEeeeeCCCCCccccCCCCC--CCCeEEEEecCCCeEEEeecCCCCCCCCCCCCCC
Q 029322 71 PPWLTMITRRIYEKSGLFPSAINHILINEYQPNQGIMPHQDGPA--YFPVVAILSLGSPVVMDFTPHPKLKNNIIPESSN 148 (195)
Q Consensus 71 P~~l~~l~~ri~~~~gl~~~~~n~~liN~Y~~G~~I~~H~D~~~--~~p~Ia~lSLgs~~~~~f~~~~~~~~~~~~~~~~ 148 (195)
|++|..|.+++++..|.....||+||||+|++|++|++|+|..+ +.+.|+|||||++|+|.|++..
T Consensus 94 P~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~~~~pI~SvSLG~~~~F~~~~~~------------ 161 (213)
T PRK15401 94 PASFLALAQRAAAAAGFPGFQPDACLINRYAPGAKLSLHQDKDERDFRAPIVSVSLGLPAVFQFGGLK------------ 161 (213)
T ss_pred hHHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcCccccccCCCcccCCCCEEEEeCCCCeEEEecccC------------
Confidence 66999999999877776567899999999999999999999743 3478999999999999998753
Q ss_pred CCcccccccccCCCCccEEEEeCCCeEEeeccccccccccCcCccc
Q 029322 149 GDAFVTEKNEWKDSHHPFSILLMPRSLLIFKDDAYSGKCLYIDVLV 194 (195)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~i~L~~gSLlIm~g~ar~~w~H~Ip~v~ 194 (195)
...++.+|.|++|||+||+|++|+.| ||||+++
T Consensus 162 ------------~~~~~~~l~L~~Gdllvm~G~sr~~~-HgVp~~~ 194 (213)
T PRK15401 162 ------------RSDPLQRILLEHGDVVVWGGPSRLRY-HGILPLK 194 (213)
T ss_pred ------------CCCceEEEEeCCCCEEEECchHhhee-ccCCcCC
Confidence 13456799999999999999999855 9999875
No 5
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=99.93 E-value=1e-25 Score=179.01 Aligned_cols=154 Identities=19% Similarity=0.245 Sum_probs=111.1
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHHHHcC-CCCCcee---------ccCcceeecCccccc-----CCC---CCCCCchhh
Q 029322 13 GNLPTLMYVADFITNIEETQLLNNIYGA-PLSKWKS---------LKNRRLQNWGGVVHE-----KGL---LPQDLPPWL 74 (195)
Q Consensus 13 ~~ipGl~~ipdfis~~e~~~L~~~l~~~-p~~~w~~---------~~~rr~~~~G~~~~~-----~~~---~~~~~P~~l 74 (195)
...||+.+.++|. -.++.++++.+... +..+|.. ++-.| +.||.++. ++. ...++|+.+
T Consensus 12 ~~~~G~~~~~~~~-~~~~~~l~~~l~~~~~~~P~~~~~~~~~g~~~sV~r--~~~W~~d~~gy~y~~~~p~~~~p~p~l~ 88 (194)
T COG3145 12 QLAPGAVILPGFL-LLTQGALVAALLFLLSQAPWFRPRRTPYGKPMSVPR--LLGWVTDRRGYRYSLRSPLTGKPWPPLL 88 (194)
T ss_pred cCCCCeEEEeccc-ccchHHHHHHHHHhcccCcccceeecCCCcEeeeee--ccceecccccccccccccCCCCCCCccH
Confidence 3456999999999 55555666655442 1234542 11223 35555542 221 123444433
Q ss_pred HHHHHHHHHhcCCCCCCcceEEeeeeCCCCCccccCCCCCCC--CeEEEEecCCCeEEEeecCCCCCCCCCCCCCCCCcc
Q 029322 75 TMITRRIYEKSGLFPSAINHILINEYQPNQGIMPHQDGPAYF--PVVAILSLGSPVVMDFTPHPKLKNNIIPESSNGDAF 152 (195)
Q Consensus 75 ~~l~~ri~~~~gl~~~~~n~~liN~Y~~G~~I~~H~D~~~~~--p~Ia~lSLgs~~~~~f~~~~~~~~~~~~~~~~~~~~ 152 (195)
.+...+.+..|.....|++||||+|+||++|+||+|..... +.|+|||||++|+|.|++..
T Consensus 89 -~~~~~~~~~~g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~~~~~v~slSLg~~~~F~~~~~~---------------- 151 (194)
T COG3145 89 -ALFHDLFGAAGYPFEGPEAVLVNRYRPGASIGWHQDKDEEDDRPPVASLSLGAPCIFRLRGRR---------------- 151 (194)
T ss_pred -HHHHHHHHHhcCCCCChhheeEEeccCCCccccccccccccCCCceEEEecCCCeEEEecccc----------------
Confidence 34444444567555789999999999999999999998766 57999999999999999975
Q ss_pred cccccccCCCCccEEEEeCCCeEEeeccccccccccCcCccc
Q 029322 153 VTEKNEWKDSHHPFSILLMPRSLLIFKDDAYSGKCLYIDVLV 194 (195)
Q Consensus 153 ~~~~~~~~~~~~~~~i~L~~gSLlIm~g~ar~~w~H~Ip~v~ 194 (195)
+.+...++.|.+||++||+|.+|+.|.|.||+..
T Consensus 152 --------r~~~~~~~~L~~Gdvvvm~G~~r~~~~h~~p~~~ 185 (194)
T COG3145 152 --------RRGPGLRLRLEHGDVVVMGGPSRLAWHHIIPKTS 185 (194)
T ss_pred --------CCCCceeEEecCCCEEEecCCccccccccccccc
Confidence 2568889999999999999999999999999864
No 6
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=99.88 E-value=2e-23 Score=167.98 Aligned_cols=175 Identities=23% Similarity=0.267 Sum_probs=132.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHHHcCCCCCce-eccCcceeecCcccccCC--CC---CCCCchhhHHHHHHHHHhcCC
Q 029322 14 NLPTLMYVADFITNIEETQLLNNIYGAPLSKWK-SLKNRRLQNWGGVVHEKG--LL---PQDLPPWLTMITRRIYEKSGL 87 (195)
Q Consensus 14 ~ipGl~~ipdfis~~e~~~L~~~l~~~p~~~w~-~~~~rr~~~~G~~~~~~~--~~---~~~~P~~l~~l~~ri~~~~gl 87 (195)
++||+.++.||+|++|+.+|++.++.. +|. +.++||.|.||..++++. +. .-.+|.+-..+.+|+...-++
T Consensus 70 p~pG~~lie~Fls~~Eea~l~~~~D~~---pW~~SQSGRRKQdyGPKvNFkk~Klkt~~F~G~P~~~~~v~rrm~~yp~l 146 (306)
T KOG3959|consen 70 PIPGLTLIENFLSESEEAKLLNMIDTV---PWAQSQSGRRKQDYGPKVNFKKKKLKTDTFVGMPEYADMVLRRMSEYPVL 146 (306)
T ss_pred ccCCeeehhhhhccchHhHHHHHhccC---chhhhcccccccccCCccchhhhhhccCcccCCchHHHHHHHHhhccchh
Confidence 577999999999999999999999986 598 568999999998887643 22 357999999999999754333
Q ss_pred CC-CCcceEEeeeeCC--CCCccccCCCCCCC-CeEEEEecCCCeEEEeecCCCCCCC----CCCCCCCCCcccccc--c
Q 029322 88 FP-SAINHILINEYQP--NQGIMPHQDGPAYF-PVVAILSLGSPVVMDFTPHPKLKNN----IIPESSNGDAFVTEK--N 157 (195)
Q Consensus 88 ~~-~~~n~~liN~Y~~--G~~I~~H~D~~~~~-p~Ia~lSLgs~~~~~f~~~~~~~~~----~~~~~~~~~~~~~~~--~ 157 (195)
-. .++.+|-+ +|.| |..|.||+|+...+ ..++++.+.++.+..+.++.-..-. +.+.+++.+.+.... +
T Consensus 147 ~gfqp~EqCnL-eYep~kgsaIdpH~DD~WiWGeRlv~~n~l~d~vl~lc~~e~~~sg~~nL~~~~s~~~e~l~~~li~~ 225 (306)
T KOG3959|consen 147 KGFQPFEQCNL-EYEPVKGSAIDPHQDDMWIWGERLVRSNRLFDFVLKLCSKECLASGIINLNTNFSESNEFLSINLING 225 (306)
T ss_pred hccCcHHHcCc-ccccccCCccCccccchhhhhhheeehhhccHHHHHhhhhhhhccceeeeccCccccccccchhhccc
Confidence 23 36888865 8887 67999999999766 8888899888888888765422111 223344445444321 1
Q ss_pred c--cCCCCccEEEEeCCCeEEeeccccccccccCcCc
Q 029322 158 E--WKDSHHPFSILLMPRSLLIFKDDAYSGKCLYIDV 192 (195)
Q Consensus 158 ~--~~~~~~~~~i~L~~gSLlIm~g~ar~~w~H~Ip~ 192 (195)
. ....+..+.|++|++||++|.|+|||+|+|+|-+
T Consensus 226 s~~~l~~~~~~~ipmP~rSLlvl~g~aRyqwkH~vlr 262 (306)
T KOG3959|consen 226 SVMTLNKSFLCYIPMPHRSLLVLAGEARYQWKHGVLR 262 (306)
T ss_pred chhhhccceEEEeecCcceeEEeechhHhhHHHHHHH
Confidence 1 1235567899999999999999999999999864
No 7
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.86 E-value=1.8e-21 Score=165.58 Aligned_cols=164 Identities=23% Similarity=0.285 Sum_probs=134.4
Q ss_pred ccCCCCc-EEEeCCCCCHHHHHHHHHHHHcCCCCCceeccCcceeecCcccccCCC------CCCCCchhhHHHHHHHHH
Q 029322 11 TVGNLPT-LMYVADFITNIEETQLLNNIYGAPLSKWKSLKNRRLQNWGGVVHEKGL------LPQDLPPWLTMITRRIYE 83 (195)
Q Consensus 11 ~~~~ipG-l~~ipdfis~~e~~~L~~~l~~~p~~~w~~~~~rr~~~~G~~~~~~~~------~~~~~P~~l~~l~~ri~~ 83 (195)
.....|| +.++.||+++.+++.+...+.++.+..|.+.++|++.|+|+.++|... ..+++|+.+..+++|+..
T Consensus 122 ~~~~~~~e~~~~~d~V~el~e~~l~~~~~~e~~~~~~~gk~R~~iq~G~~f~y~~~~~d~~~~~~piPs~~~~ii~rlv~ 201 (323)
T KOG4176|consen 122 DEVFIPGELSLIVDFVTELEEKGLIGALVDETFTYQESGKHREVIQLGYPFDYRTNNVDESKPVDPIPSLFKSIIDRLVS 201 (323)
T ss_pred ccccChhhceehhhhhhhhHHhhhhcccccccceeeccccceeeeecCceeccCCCcccccCccCCCchHHHHHHHHhhh
Confidence 3345676 999999999999999999988765444666899999999988765321 147899999999999987
Q ss_pred hcCCCCCCcceEEeeeeCCCCCccccCCCCCCCCeEEEEecCCCeEEEeecCCCCCCCCCCCCCCCCcccccccccCCCC
Q 029322 84 KSGLFPSAINHILINEYQPNQGIMPHQDGPAYFPVVAILSLGSPVVMDFTPHPKLKNNIIPESSNGDAFVTEKNEWKDSH 163 (195)
Q Consensus 84 ~~gl~~~~~n~~liN~Y~~G~~I~~H~D~~~~~p~Ia~lSLgs~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (195)
+ .+++..||+|+||+|++|++|.||+|.+.|.+.|+++||.|+|+|.|++....... ....
T Consensus 202 ~-~~ip~~pd~~~iN~Ye~G~~i~ph~~~~~F~~Pi~slS~lSe~~m~Fg~~~~~~~~------------------~~~~ 262 (323)
T KOG4176|consen 202 W-RVIPERPDQCTINFYEPGDGIPPHIDHSAFLDPISSLSFLSECTMEFGHGLLSDNI------------------GNFR 262 (323)
T ss_pred h-ccCCCCCCeeEEEeeCCCCCCCCCCChHHhcCceEEEEeecceeEEecccccccCc------------------cccc
Confidence 5 56777999999999999999999999999999999999999999999997521100 0123
Q ss_pred ccEEEEeCCCeEEeeccccccccccCcCcc
Q 029322 164 HPFSILLMPRSLLIFKDDAYSGKCLYIDVL 193 (195)
Q Consensus 164 ~~~~i~L~~gSLlIm~g~ar~~w~H~Ip~v 193 (195)
...++.++.||+++|.|.+...-.|++++.
T Consensus 263 g~~s~p~~~g~~lvi~~~~ad~~~~~~~~~ 292 (323)
T KOG4176|consen 263 GSLSLPLRYGSVLVIRGRSADVAPHCIRPS 292 (323)
T ss_pred cccccccccCeEEEeCCCcccccccccCCC
Confidence 367899999999999999999888888763
No 8
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=98.19 E-value=5.3e-05 Score=62.26 Aligned_cols=154 Identities=20% Similarity=0.259 Sum_probs=83.2
Q ss_pred EEEeCCCCCHHHHHHHHHHHHcCCCCCceeccCcceeecC-cccccCCCCCCCCchhhHHHHHHHHHhc---CCC-----
Q 029322 18 LMYVADFITNIEETQLLNNIYGAPLSKWKSLKNRRLQNWG-GVVHEKGLLPQDLPPWLTMITRRIYEKS---GLF----- 88 (195)
Q Consensus 18 l~~ipdfis~~e~~~L~~~l~~~p~~~w~~~~~rr~~~~G-~~~~~~~~~~~~~P~~l~~l~~ri~~~~---gl~----- 88 (195)
++.||++||++|.+++.+.+.+. .|.. ++....+. -.+..+......-| .-..+.++|.+.. .++
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~---~~~d--g~~taG~~~~~vKnN~ql~~d~~-~a~~l~~~i~~~L~~~~l~~sa~l 75 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAA---EWVD--GRVTAGAQAAQVKNNQQLPEDSP-LARELGNLILDALTRNPLFFSAAL 75 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhc---CCcc--CCcCcCccchhcccccccCCCCH-HHHHHHHHHHHHHhcCchhhhhcc
Confidence 57899999999999999999875 3652 33322221 12222221122222 3334444444321 122
Q ss_pred CCCcceEEeeeeCCCCCccccCCCCCCC-CeEEEEecCCCeEEEeecCCCCCCCCCCCCCCCCcccccccccCCCCccEE
Q 029322 89 PSAINHILINEYQPNQGIMPHQDGPAYF-PVVAILSLGSPVVMDFTPHPKLKNNIIPESSNGDAFVTEKNEWKDSHHPFS 167 (195)
Q Consensus 89 ~~~~n~~liN~Y~~G~~I~~H~D~~~~~-p~Ia~lSLgs~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (195)
+......++|.|.+|+..++|+|+.... +.-+ - +--+.+.|.-.. +++...+|+++... +.....+
T Consensus 76 p~~i~~~~f~rY~~G~~y~~H~D~~~~~~~~~~-~--~~rs~lS~~lyL-----nd~~~yeGGEl~~~-----~~~g~~~ 142 (226)
T PRK05467 76 PRKIHPPLFNRYEGGMSYGFHVDNAVRSLPGTG-G--RVRTDLSATLFL-----SDPDDYDGGELVIE-----DTYGEHR 142 (226)
T ss_pred ccccccceEEEECCCCccCccccCCcccCCCCC-c--ceeEEEEEEEEe-----CCCCCCcCCceEEe-----cCCCcEE
Confidence 2223366899999999999999997432 1000 0 001112221111 11122244444332 1223468
Q ss_pred EEeCCCeEEeeccccccccccCcCccc
Q 029322 168 ILLMPRSLLIFKDDAYSGKCLYIDVLV 194 (195)
Q Consensus 168 i~L~~gSLlIm~g~ar~~w~H~Ip~v~ 194 (195)
+.++.|+++++... -.|.+.+|+
T Consensus 143 Vkp~aG~~vlfps~----~lH~v~pVt 165 (226)
T PRK05467 143 VKLPAGDLVLYPST----SLHRVTPVT 165 (226)
T ss_pred EecCCCeEEEECCC----Cceeeeecc
Confidence 99999999999864 449888764
No 9
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=98.16 E-value=0.00019 Score=56.20 Aligned_cols=158 Identities=15% Similarity=0.128 Sum_probs=88.1
Q ss_pred CcEEEeCCCCCHHHHHHHHHHHHcCCCCCceec-c-Ccce--eecCcccccCCCCC-CCCchhhHHHHHHHHHhcCCC--
Q 029322 16 PTLMYVADFITNIEETQLLNNIYGAPLSKWKSL-K-NRRL--QNWGGVVHEKGLLP-QDLPPWLTMITRRIYEKSGLF-- 88 (195)
Q Consensus 16 pGl~~ipdfis~~e~~~L~~~l~~~p~~~w~~~-~-~rr~--~~~G~~~~~~~~~~-~~~P~~l~~l~~ri~~~~gl~-- 88 (195)
|+++++++|||++|.+.|++..... .|... . +... ....++.+...... ..-.+....+.+++....++.
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~---~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~~~l~~~i~~~~~~~~~ 77 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPL---GWRGEVTRGDTNPNHDSKYRQSNGTWLELLKGDLVIERIRQRLADFLGLLRG 77 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhh---cccceeecCCCCccccCCCEeecceecCCCCCCHHHHHHHHHHHHHHCCCch
Confidence 7899999999999999999988764 23211 0 1000 00111111111111 112556677888887766653
Q ss_pred -CCCcceEEeeeeCCCCCccccCCCCCCCCeEEEEecCCCeEEEeecCCCCCCCCCCCCCCCCcccccccccCCCCccEE
Q 029322 89 -PSAINHILINEYQPNQGIMPHQDGPAYFPVVAILSLGSPVVMDFTPHPKLKNNIIPESSNGDAFVTEKNEWKDSHHPFS 167 (195)
Q Consensus 89 -~~~~n~~liN~Y~~G~~I~~H~D~~~~~p~Ia~lSLgs~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (195)
......+.++.|.+|+...+|.|....... ..+.+++-=... ....|+++..-.. +......
T Consensus 78 ~~~~~~~~~~~~Y~~g~~~~~H~D~~~~~~~-------~~r~~T~~~yLn-------~~~~GG~~~f~~~---~~~~~~~ 140 (178)
T smart00702 78 LPLSAEDAQVARYGPGGHYGPHVDNFEDDEN-------GDRIATFLLYLN-------DVEEGGELVFPGL---GLMVCAT 140 (178)
T ss_pred hhccCcceEEEEECCCCcccCcCCCCCCCCC-------CCeEEEEEEEec-------cCCcCceEEecCC---CCccceE
Confidence 356788899999999999999999743210 122222211110 0112332221110 0123457
Q ss_pred EEeCCCeEEeeccccccccccCcCccc
Q 029322 168 ILLMPRSLLIFKDDAYSGKCLYIDVLV 194 (195)
Q Consensus 168 i~L~~gSLlIm~g~ar~~w~H~Ip~v~ 194 (195)
|.-..|+++++...-.. ..|++.+|.
T Consensus 141 v~P~~G~~v~f~~~~~~-~~H~v~pv~ 166 (178)
T smart00702 141 VKPKKGDLLFFPSGRGR-SLHGVCPVT 166 (178)
T ss_pred EeCCCCcEEEEeCCCCC-ccccCCcce
Confidence 88889999998754323 349988874
No 10
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=98.14 E-value=2.2e-06 Score=73.66 Aligned_cols=100 Identities=14% Similarity=0.069 Sum_probs=75.4
Q ss_pred CCCchhhHHHHH-HHHHhcCCCC-CCcceEEeeeeCCCCCccccCCCCCCC--CeEEEEecCCCeEEEeecCCCCCCCCC
Q 029322 68 QDLPPWLTMITR-RIYEKSGLFP-SAINHILINEYQPNQGIMPHQDGPAYF--PVVAILSLGSPVVMDFTPHPKLKNNII 143 (195)
Q Consensus 68 ~~~P~~l~~l~~-ri~~~~gl~~-~~~n~~liN~Y~~G~~I~~H~D~~~~~--p~Ia~lSLgs~~~~~f~~~~~~~~~~~ 143 (195)
..+|+++..+.+ ++.+..|.-. ..++.+|+|+|.+++.++-|.|..+.. +.+.+.|||.+|++.+.....
T Consensus 190 ~~~~~~ll~~~~~~~~~a~~~~~~~~~~Gli~nYlsi~~tl~ih~d~reld~~~pf~s~s~g~~ai~lLg~m~l------ 263 (378)
T KOG2731|consen 190 YNIKPSLLGLLREKVKAAKGFSHIVIRPGLIKNYLSIDDTLGIHLDCRELDLSKPFYSPSLGQGAILLLGMMCL------ 263 (378)
T ss_pred CCCChHHhhhhhhhhhhhcCccceeccCcceeeecccCcEEEEEeehhhcccCCccccccccccceeeeccccc------
Confidence 346666655444 3433344222 245668999999999999999998665 457789999999999987641
Q ss_pred CCCCCCCcccccccccCCCCccEEEEeCCCeEEeeccccccccccCcCc
Q 029322 144 PESSNGDAFVTEKNEWKDSHHPFSILLMPRSLLIFKDDAYSGKCLYIDV 192 (195)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~i~L~~gSLlIm~g~ar~~w~H~Ip~ 192 (195)
...+..+.|..|..+||+|.+|... ||||-
T Consensus 264 ------------------~e~p~p~~lrsGdv~im~Gfsrlv~-haIp~ 293 (378)
T KOG2731|consen 264 ------------------GENPDPMTLRSGDVVIMDGFSRLVE-HAIPE 293 (378)
T ss_pred ------------------CCCCCccccccCceEeecchHHHHh-hccch
Confidence 3455679999999999999999977 99993
No 11
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=96.94 E-value=0.00061 Score=48.02 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=40.5
Q ss_pred cceEEeeeeC---CCCCccccCCCCCCCCeEEEEecC-CCeEEEeecCCCCCCCCCCCCCCCCcccccccccCCCCccEE
Q 029322 92 INHILINEYQ---PNQGIMPHQDGPAYFPVVAILSLG-SPVVMDFTPHPKLKNNIIPESSNGDAFVTEKNEWKDSHHPFS 167 (195)
Q Consensus 92 ~n~~liN~Y~---~G~~I~~H~D~~~~~p~Ia~lSLg-s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (195)
++++.+|+|. .+.++++|.|.. ..+.++.+- ...-+.|.....+.. .......
T Consensus 1 ~~~~~~~~Y~~~~~~~~~~~H~D~~---~~~~Til~~~~~~gL~~~~~~~~~~--------------------v~~~~~~ 57 (98)
T PF03171_consen 1 PSQLRLNRYPPPENGVGIGPHTDDE---DGLLTILFQDEVGGLQVRDDGEWVD--------------------VPPPPGG 57 (98)
T ss_dssp --EEEEEEE-SCCGCEEEEEEEES-----SSEEEEEETSTS-EEEEETTEEEE------------------------TTC
T ss_pred CCEEEEEECCCcccCCceeCCCcCC---CCeEEEEecccchheeccccccccC--------------------ccCccce
Confidence 4789999999 667999999995 223334443 555666655420000 0011115
Q ss_pred EEeCCCe-EEeeccccccccccCcCcc
Q 029322 168 ILLMPRS-LLIFKDDAYSGKCLYIDVL 193 (195)
Q Consensus 168 i~L~~gS-LlIm~g~ar~~w~H~Ip~v 193 (195)
+.+.-|+ |.+|++..+..+.|+|.++
T Consensus 58 ~~v~~G~~l~~~t~g~~~~~~HrV~~~ 84 (98)
T PF03171_consen 58 FIVNFGDALEILTNGRYPATLHRVVPP 84 (98)
T ss_dssp EEEEEBHHHHHHTTTSS----EEEE--
T ss_pred eeeeceeeeecccCCccCCceeeeEcC
Confidence 6666666 6667777899999998765
No 12
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=96.83 E-value=0.016 Score=46.17 Aligned_cols=154 Identities=19% Similarity=0.265 Sum_probs=81.6
Q ss_pred cEEEeCCCCCHHHHHHHHHHHHcCCCCCceeccCcceeec-CcccccCCCCC--CCCchhh-HHHHHHHHHhcCCC-C-C
Q 029322 17 TLMYVADFITNIEETQLLNNIYGAPLSKWKSLKNRRLQNW-GGVVHEKGLLP--QDLPPWL-TMITRRIYEKSGLF-P-S 90 (195)
Q Consensus 17 Gl~~ipdfis~~e~~~L~~~l~~~p~~~w~~~~~rr~~~~-G~~~~~~~~~~--~~~P~~l-~~l~~ri~~~~gl~-~-~ 90 (195)
-++-||..+|+++...+-+.+... .|.. +|-.+-+ |..+..+...+ .++-..+ ..+++++.+ ..++ . .
T Consensus 3 m~lhIp~VLs~a~va~iRa~l~~A---~w~d--Grat~g~q~a~vk~n~qlp~~s~l~~~vg~~il~al~~-~plff~aA 76 (229)
T COG3128 3 MMLHIPEVLSEAQVARIRAALEQA---EWVD--GRATQGPQGAQVKNNLQLPQDSALARELGNEILQALTA-HPLFFAAA 76 (229)
T ss_pred eEEechhhCCHHHHHHHHHHHhhc---cccc--cccccCcchhhhhccccCCcccHHHHHHHHHHHHHHHh-chhHHHhh
Confidence 356789999999988877777664 4663 3333322 22222221111 2222223 223444432 2221 1 1
Q ss_pred CcceE---EeeeeCCCCCccccCCCCCC--CCeEE-EEecCCCeEEEeecCCCCCCCCCCCCCCCCcccccccccCCCCc
Q 029322 91 AINHI---LINEYQPNQGIMPHQDGPAY--FPVVA-ILSLGSPVVMDFTPHPKLKNNIIPESSNGDAFVTEKNEWKDSHH 164 (195)
Q Consensus 91 ~~n~~---liN~Y~~G~~I~~H~D~~~~--~p~Ia-~lSLgs~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (195)
.|-.| +.|.|+.|+..++|+|+..- .|.-. .++---+|...+ +++++.+|+++-.. +.=.
T Consensus 77 Lp~t~~~P~Fn~Y~eg~~f~fHvDgavr~~hp~~~~~lrtdls~tlfl---------~DPedYdGGeLVv~-----dtYg 142 (229)
T COG3128 77 LPRTCLPPLFNRYQEGDFFGFHVDGAVRSIHPGSGFRLRTDLSCTLFL---------SDPEDYDGGELVVN-----DTYG 142 (229)
T ss_pred cccccCCchhhhccCCCcccccccCcccccCCCCCceeEeeeeeeeec---------CCccccCCceEEEe-----cccc
Confidence 23333 56999999999999999531 12110 122222222222 22344455544322 2334
Q ss_pred cEEEEeCCCeEEeeccccccccccCcCccc
Q 029322 165 PFSILLMPRSLLIFKDDAYSGKCLYIDVLV 194 (195)
Q Consensus 165 ~~~i~L~~gSLlIm~g~ar~~w~H~Ip~v~ 194 (195)
...+.||-|||++..+.+ .|.|.+|.
T Consensus 143 ~h~VklPAGdLVlypStS----lH~VtPVT 168 (229)
T COG3128 143 NHRVKLPAGDLVLYPSTS----LHEVTPVT 168 (229)
T ss_pred ceEEeccCCCEEEccccc----ceeccccc
Confidence 678999999999988775 46666653
No 13
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=96.46 E-value=0.022 Score=49.05 Aligned_cols=97 Identities=18% Similarity=0.122 Sum_probs=59.4
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHHHcCCCCCceec---cCcceeecCcccccCCCCCCCCchhhHHHHHHHHHhcCCCCCC
Q 029322 15 LPTLMYVADFITNIEETQLLNNIYGAPLSKWKSL---KNRRLQNWGGVVHEKGLLPQDLPPWLTMITRRIYEKSGLFPSA 91 (195)
Q Consensus 15 ipGl~~ipdfis~~e~~~L~~~l~~~p~~~w~~~---~~rr~~~~G~~~~~~~~~~~~~P~~l~~l~~ri~~~~gl~~~~ 91 (195)
=|-+++++||||++|.+.|++.....- .+.... ++.. ..-..+..+..+....--+.+..|.+||...+++....
T Consensus 53 ~P~i~~~~nfLs~~Ecd~Li~la~~~l-~~S~v~~~~~g~~-~~s~~RTS~~~~l~~~~dpvv~~I~~Ria~~t~lp~~~ 130 (310)
T PLN00052 53 QPRIFVYKGFLSDAECDHLVKLAKKKI-QRSMVADNKSGKS-VMSEVRTSSGMFLDKRQDPVVSRIEERIAAWTFLPEEN 130 (310)
T ss_pred CCCEEEECCcCCHHHHHHHHHhccccc-ccceeecCCCCcc-ccCCCEEecceeecCCCCHHHHHHHHHHHHHhCCCccc
Confidence 468999999999999999998765321 111100 0000 00000111111221222356788888898777754455
Q ss_pred cceEEeeeeCCCCCccccCCCC
Q 029322 92 INHILINEYQPNQGIMPHQDGP 113 (195)
Q Consensus 92 ~n~~liN~Y~~G~~I~~H~D~~ 113 (195)
-..+.|-.|.+|+...+|.|..
T Consensus 131 ~E~lQVlrY~~Gq~Y~~H~D~~ 152 (310)
T PLN00052 131 AENIQILRYEHGQKYEPHFDYF 152 (310)
T ss_pred CcceEEEecCCCCCCCCCCCcc
Confidence 6677888999999999999963
No 14
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=95.74 E-value=0.017 Score=40.58 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=17.1
Q ss_pred EEeeeeCCCCCccccCCCCC
Q 029322 95 ILINEYQPNQGIMPHQDGPA 114 (195)
Q Consensus 95 ~liN~Y~~G~~I~~H~D~~~ 114 (195)
|-+|.|.+|+.++||.|...
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~ 20 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSY 20 (100)
T ss_dssp -EEEEEETTEEEEEEESSSC
T ss_pred CEEEEECcCCEEeeeECCCC
Confidence 45899999999999999953
No 15
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family. This enzyme is a dioxygenase that repairs alkylated DNA and RNA by oxidative demethylation []. FTO activity is highest towards single-stranded RNA containing 3-methyluracil, followed by single-stranded DNA containing 3-methylthymine. FTO has low demethylase activity towards single-stranded DNA containing 1-methyladenine or 3-methylcytosine []. FTO has no activity towards 1-methylguanine. It has no detectable activity towards double-stranded DNA. FTO requires molecular oxygen, alpha-ketoglutarate and iron. FTO contributes to the regulation of the global metabolic rate, energy expenditure and energy homeostasis. It contributes to the regulation of body size and body fat accumulation as well []. This domain is the catalytic AlkB-like domain from the FTO protein []. This domain catalyses a demethylase activity with a preference for 3-methylthymidine.; PDB: 3LFM_A.
Probab=95.69 E-value=0.016 Score=47.83 Aligned_cols=83 Identities=16% Similarity=0.161 Sum_probs=42.0
Q ss_pred CcceEEeeeeCC--------------C---CCccccCCCCCCC-CeEEEEecCCCeEEEeecCCCCCCCCCCCCCCCCcc
Q 029322 91 AINHILINEYQP--------------N---QGIMPHQDGPAYF-PVVAILSLGSPVVMDFTPHPKLKNNIIPESSNGDAF 152 (195)
Q Consensus 91 ~~n~~liN~Y~~--------------G---~~I~~H~D~~~~~-p~Ia~lSLgs~~~~~f~~~~~~~~~~~~~~~~~~~~ 152 (195)
.||-+|||++.| | -.++||.|.-... .+||.-|--++ .+ +...+
T Consensus 137 ~fNvTLlN~MdP~~~~~~~LK~Ep~fgmGKmaVsWH~DenL~~~StVAVY~~s~~--------~~----------~~~~W 198 (253)
T PF12933_consen 137 EFNVTLLNYMDPSSQAMPDLKEEPYFGMGKMAVSWHHDENLVERSTVAVYSYSCE--------EP----------EPADW 198 (253)
T ss_dssp ---EEEEEEE-S--S-SSS--B-SSS---BEEEEEE---SB-TT--EEEEEEE-----------------------TTSE
T ss_pred eeehhhhhccCcccccccccccccccCCcceeeeeccccccccccceEEEEecCC--------CC----------CCCce
Confidence 699999999998 1 1578999986433 67775444332 10 00111
Q ss_pred cccccccCCCCccEEEEeCCCeEEeeccccccccccCcC
Q 029322 153 VTEKNEWKDSHHPFSILLMPRSLLIFKDDAYSGKCLYID 191 (195)
Q Consensus 153 ~~~~~~~~~~~~~~~i~L~~gSLlIm~g~ar~~w~H~Ip 191 (195)
...-.++.-.-+.+.++|+.|++|.|-++.....+|+|-
T Consensus 199 ~VgLka~D~~tP~L~vPL~sgd~Y~Mldd~N~tHqH~Vl 237 (253)
T PF12933_consen 199 HVGLKAWDIETPGLAVPLRSGDCYYMLDDFNATHQHCVL 237 (253)
T ss_dssp EEEEETT--SS-EEEEEE-TT-EEEE-TTHHHHEEEEEE
T ss_pred EEEEeecCCCCCeeEEeccCCCeEEEccccchhhHHHHh
Confidence 111111112347789999999999999999999999874
No 16
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=94.10 E-value=0.31 Score=38.07 Aligned_cols=107 Identities=21% Similarity=0.216 Sum_probs=64.9
Q ss_pred CCCchhhHHHHHHHHHhcCCCCCCcceEEeeeeCCCCCccccCCCC--CCCCeEEEEecCCCeEEEeecCCCCCCCCCCC
Q 029322 68 QDLPPWLTMITRRIYEKSGLFPSAINHILINEYQPNQGIMPHQDGP--AYFPVVAILSLGSPVVMDFTPHPKLKNNIIPE 145 (195)
Q Consensus 68 ~~~P~~l~~l~~ri~~~~gl~~~~~n~~liN~Y~~G~~I~~H~D~~--~~~p~Ia~lSLgs~~~~~f~~~~~~~~~~~~~ 145 (195)
..+|+.+.+.+++..+ .| ..--..++..|.+|+...-|.|.- .++|.=+.+-|... .+
T Consensus 41 ~~yP~~~~~fl~~ch~-aG---Q~rptplllrY~~gdyn~LHqdlyGe~vFPlQvv~lLs~P----------------g~ 100 (173)
T PF09859_consen 41 ARYPATLAEFLARCHA-AG---QTRPTPLLLRYGPGDYNCLHQDLYGEHVFPLQVVILLSEP----------------GE 100 (173)
T ss_pred CCCCccHHHHHHHHHh-cc---CCCCchhhheeCCCCccccccCCCCCcccCeEEEEEcCCC----------------CC
Confidence 4678888888888864 44 443445678999999999999984 56674332222111 11
Q ss_pred CCCCCcccccccccCCCCccEEEEeCCCeEEeec----------cccccccccCcCccc
Q 029322 146 SSNGDAFVTEKNEWKDSHHPFSILLMPRSLLIFK----------DDAYSGKCLYIDVLV 194 (195)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~i~L~~gSLlIm~----------g~ar~~w~H~Ip~v~ 194 (195)
+-.|++|-..+-.+.......-+.|..|+.+|+. |.-|-.-.|||..|.
T Consensus 101 DftGGEFVltEQrPR~QSR~~V~~L~qGda~if~t~~RPv~G~rG~yRv~~RHgVS~vr 159 (173)
T PF09859_consen 101 DFTGGEFVLTEQRPRMQSRAMVLPLRQGDALIFATNHRPVRGARGYYRVNMRHGVSRVR 159 (173)
T ss_pred cccCceEEEEEecCCccCccccCCcCCCCEEEEecCCCCcCCCccceeccccccccccc
Confidence 2233333111111112345567889999998885 556667788888764
No 17
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=93.28 E-value=0.39 Score=40.98 Aligned_cols=93 Identities=24% Similarity=0.309 Sum_probs=60.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHHHcCCCCCceeccCcceeec-C-cc-----c-ccCC-CCCCCCchhhHHHHHHHHHh
Q 029322 14 NLPTLMYVADFITNIEETQLLNNIYGAPLSKWKSLKNRRLQNW-G-GV-----V-HEKG-LLPQDLPPWLTMITRRIYEK 84 (195)
Q Consensus 14 ~ipGl~~ipdfis~~e~~~L~~~l~~~p~~~w~~~~~rr~~~~-G-~~-----~-~~~~-~~~~~~P~~l~~l~~ri~~~ 84 (195)
--|.+.+++||++++|.+.|++.-... +....+..- | .. + ..+| +....-.+.+..+-+||...
T Consensus 95 w~P~~~~yhd~ls~~e~d~l~~lak~~-------l~~stv~~~~~~~~~~~~~~R~S~~t~l~~~~~~~~~~i~~ri~~~ 167 (289)
T KOG1591|consen 95 WDPRVVLYHDFLSDEECDHLISLAKPK-------LERSTVVADKGTGHSTTSAVRTSSGTFLPDGASPVVSRIEQRIADL 167 (289)
T ss_pred cCCceEeehhcCCHHHHHHHHHhhhhh-------hhceeeeccCCcccccceeeEecceeEecCCCCHHHHHHHHHHHhc
Confidence 356899999999999998887765432 111111111 1 00 0 1122 12223455566777788776
Q ss_pred cCCCCCCcceEEeeeeCCCCCccccCCCC
Q 029322 85 SGLFPSAINHILINEYQPNQGIMPHQDGP 113 (195)
Q Consensus 85 ~gl~~~~~n~~liN~Y~~G~~I~~H~D~~ 113 (195)
+++.-+....+.|-.|..|+.-.+|.|--
T Consensus 168 T~l~~e~~E~lqVlnYg~Gg~Y~~H~D~~ 196 (289)
T KOG1591|consen 168 TGLPVENGESLQVLNYGLGGHYEPHYDYF 196 (289)
T ss_pred cCCCcccCccceEEEecCCcccccccccc
Confidence 77655778888899999999999999875
No 18
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=77.56 E-value=7.5 Score=33.41 Aligned_cols=74 Identities=22% Similarity=0.296 Sum_probs=39.8
Q ss_pred ceEEeeeeC-CCC--CccccCCCCCCCCeEEEEecCCCeEEEeecCCCCCCCCCCCCCCCCcccccccccCCCCccEEEE
Q 029322 93 NHILINEYQ-PNQ--GIMPHQDGPAYFPVVAILSLGSPVVMDFTPHPKLKNNIIPESSNGDAFVTEKNEWKDSHHPFSIL 169 (195)
Q Consensus 93 n~~liN~Y~-~G~--~I~~H~D~~~~~p~Ia~lSLgs~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 169 (195)
..|-+|.|- |++ ++++|.|.. +++ +|=+.+.+..++....... . .......+... .......++.
T Consensus 112 ~~~~~n~Y~tp~g~~g~~~H~D~~---dvf-vlQ~~G~K~W~l~~~~~~~-~---~~~~~~~~~~~----~~~~~~~~~~ 179 (319)
T PF08007_consen 112 CPVGANAYLTPPGSQGFGPHYDDH---DVF-VLQLEGRKRWRLYPPPDEP-A---PLYSDQPFKQL----EEFEPVEEVV 179 (319)
T ss_dssp S-EEEEEEEETSSBEESECEE-SS---EEE-EEEEES-EEEEEE-SCCCT-T---TSSCE--TTTC----G--STSEEEE
T ss_pred cccceEEEecCCCCCCccCEECCc---ccE-EEECCceeEEEECCCCccc-c---cccCCCCcccc----ccCceeEEEE
Confidence 678899995 444 999999995 344 4888899999998832100 0 00000011000 0124567899
Q ss_pred eCCCeEEee
Q 029322 170 LMPRSLLIF 178 (195)
Q Consensus 170 L~~gSLlIm 178 (195)
|.+|++|.+
T Consensus 180 L~pGD~LYl 188 (319)
T PF08007_consen 180 LEPGDVLYL 188 (319)
T ss_dssp E-TT-EEEE
T ss_pred ECCCCEEEE
Confidence 999997766
No 19
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=65.64 E-value=15 Score=28.83 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=23.1
Q ss_pred ccEEEEeCCCeEEeeccccccccccCcCccc
Q 029322 164 HPFSILLMPRSLLIFKDDAYSGKCLYIDVLV 194 (195)
Q Consensus 164 ~~~~i~L~~gSLlIm~g~ar~~w~H~Ip~v~ 194 (195)
.-+.+.+.+||++++.+..- .||+.+|.
T Consensus 126 ~g~~~~~~~GtVl~~~~~~~---~Hgvtpv~ 153 (171)
T PF12851_consen 126 LGVAFAYQPGTVLIFCAKRE---LHGVTPVE 153 (171)
T ss_pred CCEEEecCCCcEEEEcccce---eeecCccc
Confidence 56789999999999988654 49998875
No 20
>PRK10646 ADP-binding protein; Provisional
Probab=58.76 E-value=16 Score=28.16 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCC--CCcceEEeeeeCCCCCccccCCCC
Q 029322 76 MITRRIYEKSGLFP--SAINHILINEYQPNQGIMPHQDGP 113 (195)
Q Consensus 76 ~l~~ri~~~~gl~~--~~~n~~liN~Y~~G~~I~~H~D~~ 113 (195)
.+++-+.+..|+-. ..|...|+|+|..+..--.|.|-=
T Consensus 43 tf~rgl~~~Lg~~~~V~SPTFtlv~~Y~~~~~~l~H~DlY 82 (153)
T PRK10646 43 TFSRGFLQALGHQGNVKSPTYTLVEPYTLDNLMVYHFDLY 82 (153)
T ss_pred HHHHHHHHHcCCCCCCCCCCEeeEEEeeCCCCCEEEEeec
Confidence 35666655556433 479999999998766677999983
No 21
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=55.31 E-value=27 Score=29.61 Aligned_cols=24 Identities=8% Similarity=-0.082 Sum_probs=20.9
Q ss_pred CcEEEeCCCCCHHHHHHHHHHHHc
Q 029322 16 PTLMYVADFITNIEETQLLNNIYG 39 (195)
Q Consensus 16 pGl~~ipdfis~~e~~~L~~~l~~ 39 (195)
.|..+++++|+++|-+.|.+.++.
T Consensus 14 ~Gyv~~~~~~s~eei~~L~~~~~~ 37 (288)
T TIGR01762 14 NGFIGPFTLYSPEEMKETWKRIRL 37 (288)
T ss_pred CCEEeCcCCCCHHHHHHHHHHHHH
Confidence 389999999999999999888754
No 22
>PLN02904 oxidoreductase
Probab=52.86 E-value=76 Score=27.77 Aligned_cols=28 Identities=7% Similarity=-0.020 Sum_probs=22.1
Q ss_pred CCccEEEEeCCCeEEeeccccccccccC
Q 029322 162 SHHPFSILLMPRSLLIFKDDAYSGKCLY 189 (195)
Q Consensus 162 ~~~~~~i~L~~gSLlIm~g~ar~~w~H~ 189 (195)
.+..+.+.-.+|+++|--|+.=..|+-|
T Consensus 252 ~g~Wi~V~p~pgalVVNiGD~Le~~TNG 279 (357)
T PLN02904 252 NKNWVCVPYIEGALIVQLGDQVEVMSNG 279 (357)
T ss_pred CCCEEECCCCCCeEEEEccHHHHHHhCC
Confidence 3567888888999999999977777543
No 23
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=51.98 E-value=73 Score=26.62 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=21.9
Q ss_pred CcEEEeCCCCCHHHHHHHHHHHHcC
Q 029322 16 PTLMYVADFITNIEETQLLNNIYGA 40 (195)
Q Consensus 16 pGl~~ipdfis~~e~~~L~~~l~~~ 40 (195)
.|..+++++|++++-+.|.+.+...
T Consensus 28 dGyvvl~~vls~eev~~lr~~i~~~ 52 (277)
T TIGR02408 28 DGFLLLENLFSDDEVAALLAEVERM 52 (277)
T ss_pred CCEEECcccCCHHHHHHHHHHHHHH
Confidence 4999999999999999999888664
No 24
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=48.36 E-value=8.9 Score=33.66 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=36.8
Q ss_pred CcceEEeeeeCCCCCccccCCCCCCC------CeEEEEecCCCeEEEeecC
Q 029322 91 AINHILINEYQPNQGIMPHQDGPAYF------PVVAILSLGSPVVMDFTPH 135 (195)
Q Consensus 91 ~~n~~liN~Y~~G~~I~~H~D~~~~~------p~Ia~lSLgs~~~~~f~~~ 135 (195)
.|+=|++|.|.+-..++-|+|..+|. =.|..+|.|. +-|-+.+.
T Consensus 313 lp~i~~~~f~~~~g~~~~~Q~~~ey~ks~r~nl~Irqv~~~d-~~f~~~~~ 362 (378)
T KOG2731|consen 313 LPDICIVNFYSETGSLGLHQDKAEYLKSSRVNLPIRQVSIGD-AEFLYGDQ 362 (378)
T ss_pred CcccccccccCCCcccccchhHHHHHHhhhcCceeEEeccCc-cccccCch
Confidence 68999999999999999999997654 2566799998 88887765
No 25
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=46.49 E-value=31 Score=25.89 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCCC--CCcceEEeeeeCCCCCccccCCCC
Q 029322 77 ITRRIYEKSGLFP--SAINHILINEYQPNQGIMPHQDGP 113 (195)
Q Consensus 77 l~~ri~~~~gl~~--~~~n~~liN~Y~~G~~I~~H~D~~ 113 (195)
+++.+.+..|... ..|...++|+|..+...-.|.|-=
T Consensus 38 l~~~l~~~lg~~~~v~SPTf~lv~~Y~~~~~~l~H~DlY 76 (133)
T TIGR00150 38 LVQGLLQGLGIQGNVTSPTFTLVNEYNEGNLMVYHFDLY 76 (133)
T ss_pred HHHHHHHHcCCCCcccCCCeeeeeecccCCCcEEEechh
Confidence 4555554445432 368899999998766666899973
No 26
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=46.38 E-value=97 Score=27.15 Aligned_cols=26 Identities=4% Similarity=-0.175 Sum_probs=20.9
Q ss_pred ccEEEEeCCCeEEeeccccccccccC
Q 029322 164 HPFSILLMPRSLLIFKDDAYSGKCLY 189 (195)
Q Consensus 164 ~~~~i~L~~gSLlIm~g~ar~~w~H~ 189 (195)
..+.|.-.+|+++|--|+.=..|+-|
T Consensus 243 ~Wi~Vpp~pgalVVNiGD~L~~~TNG 268 (358)
T PLN02515 243 TWITVQPVEGAFVVNLGDHGHYLSNG 268 (358)
T ss_pred eEEECCCCCCeEEEEccHHHHHHhCC
Confidence 57788888999999999877777644
No 27
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=46.25 E-value=8.4 Score=28.61 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCCC--CCcceEEeeeeCCCCCccccCCCC
Q 029322 77 ITRRIYEKSGLFP--SAINHILINEYQPNQGIMPHQDGP 113 (195)
Q Consensus 77 l~~ri~~~~gl~~--~~~n~~liN~Y~~G~~I~~H~D~~ 113 (195)
+++.+.+..|.-. ..|...++|+|..+...-.|.|-=
T Consensus 31 f~r~l~~~lg~~~~V~SPTF~l~~~Y~~~~~~l~H~DLY 69 (123)
T PF02367_consen 31 FVRGLARALGIDEEVTSPTFSLVNEYEGGNIPLYHFDLY 69 (123)
T ss_dssp HHHHHHHHTT--S----TTTTSEEEEEETTEEEEEEE-T
T ss_pred HHHHHHHHcCCCCCcCCCCeEEEEEecCCCceEEEeecc
Confidence 4555554445432 468999999999988888999984
No 28
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.81 E-value=1.5e+02 Score=23.88 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=18.2
Q ss_pred EEeeeeCCCCCccccCCCC--CCCCe
Q 029322 95 ILINEYQPNQGIMPHQDGP--AYFPV 118 (195)
Q Consensus 95 ~liN~Y~~G~~I~~H~D~~--~~~p~ 118 (195)
-|+..|-|||+=..|+|.- ..+|.
T Consensus 126 pLlLqYgpgD~NcLHQDLYGelvFPL 151 (236)
T COG3826 126 PLLLQYGPGDYNCLHQDLYGELVFPL 151 (236)
T ss_pred ceeEEecCCccchhhhhhhhceeeee
Confidence 3567899999999999983 34463
No 29
>PLN02947 oxidoreductase
Probab=43.34 E-value=1.4e+02 Score=26.39 Aligned_cols=28 Identities=11% Similarity=-0.024 Sum_probs=21.2
Q ss_pred CCccEEEEeCCCeEEeeccccccccccC
Q 029322 162 SHHPFSILLMPRSLLIFKDDAYSGKCLY 189 (195)
Q Consensus 162 ~~~~~~i~L~~gSLlIm~g~ar~~w~H~ 189 (195)
.+..+.|.-.+|+++|--|+.=..|+-|
T Consensus 269 ~g~Wi~V~p~pga~VVNvGD~Lq~~SNG 296 (374)
T PLN02947 269 AGRWVTVEPIPGSFVVNVGDHLEIFSNG 296 (374)
T ss_pred CCEEEeCCCCCCeEEEEeCceeeeeeCC
Confidence 3567778888899999888877777643
No 30
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=40.98 E-value=1.7e+02 Score=25.37 Aligned_cols=28 Identities=7% Similarity=-0.012 Sum_probs=22.7
Q ss_pred CCccEEEEeCCCeEEeeccccccccccC
Q 029322 162 SHHPFSILLMPRSLLIFKDDAYSGKCLY 189 (195)
Q Consensus 162 ~~~~~~i~L~~gSLlIm~g~ar~~w~H~ 189 (195)
.+..+.+.-.+|+++|--|+.=..|+-|
T Consensus 239 ~g~Wi~V~p~pg~~vVNiGD~L~~~Tng 266 (345)
T PLN02750 239 DGEWIPVKPIPDAFIINIGNCMQVWTND 266 (345)
T ss_pred CCeEEEccCCCCeEEEEhHHHHHHHhCC
Confidence 4567888889999999999987777654
No 31
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=39.96 E-value=1.1e+02 Score=25.53 Aligned_cols=28 Identities=11% Similarity=-0.045 Sum_probs=22.0
Q ss_pred CCccEEEEeCCCeEEeeccccccccccC
Q 029322 162 SHHPFSILLMPRSLLIFKDDAYSGKCLY 189 (195)
Q Consensus 162 ~~~~~~i~L~~gSLlIm~g~ar~~w~H~ 189 (195)
.+..+.|.-.+|+++|.-|+.=..|+.|
T Consensus 160 ~g~Wi~V~p~p~a~vVNiGD~l~~~tng 187 (262)
T PLN03001 160 DAEWLMVPPISDAILIIIADQTEIITNG 187 (262)
T ss_pred CCeEEECCCCCCcEEEEccHHHHHHhCC
Confidence 3466777778899999999988888754
No 32
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=39.79 E-value=1.5e+02 Score=25.86 Aligned_cols=28 Identities=7% Similarity=0.034 Sum_probs=22.1
Q ss_pred CCccEEEEeCCCeEEeeccccccccccC
Q 029322 162 SHHPFSILLMPRSLLIFKDDAYSGKCLY 189 (195)
Q Consensus 162 ~~~~~~i~L~~gSLlIm~g~ar~~w~H~ 189 (195)
.+..+.+.-.+|+++|--|+.=..|+-|
T Consensus 241 ~g~Wi~V~p~pgalvVNiGD~L~~~TNG 268 (348)
T PLN02912 241 DGKWIAVNPIPNTFIVNLGDQMQVISND 268 (348)
T ss_pred CCcEEECCCcCCeEEEEcCHHHHHHhCC
Confidence 3567788888999999999887777654
No 33
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=38.63 E-value=62 Score=27.49 Aligned_cols=27 Identities=15% Similarity=0.047 Sum_probs=22.3
Q ss_pred CccEEEEeCCCeEEeeccccccccccC
Q 029322 163 HHPFSILLMPRSLLIFKDDAYSGKCLY 189 (195)
Q Consensus 163 ~~~~~i~L~~gSLlIm~g~ar~~w~H~ 189 (195)
+..+.|.-.+|+++|.-|+.=..|+.|
T Consensus 197 g~Wi~V~p~pga~vVNiGD~l~~~TNG 223 (300)
T PLN02365 197 GEFVPVDPLPGTLLVNLGDVATAWSNG 223 (300)
T ss_pred CeEEecCCCCCeEEEEhhHHHHHHhCC
Confidence 567788888999999999988888655
No 34
>PTZ00273 oxidase reductase; Provisional
Probab=38.57 E-value=1.5e+02 Score=25.31 Aligned_cols=28 Identities=11% Similarity=-0.090 Sum_probs=21.8
Q ss_pred CCccEEEEeCCCeEEeeccccccccccC
Q 029322 162 SHHPFSILLMPRSLLIFKDDAYSGKCLY 189 (195)
Q Consensus 162 ~~~~~~i~L~~gSLlIm~g~ar~~w~H~ 189 (195)
.+..+.|.-.+|+++|.-|++=..|+-|
T Consensus 223 ~g~Wi~V~p~pg~lvVNvGD~l~~~TnG 250 (320)
T PTZ00273 223 SGEWMDVPPLEGSFVVNIGDMMEMWSNG 250 (320)
T ss_pred CCCEEeCCCCCCeEEEEHHHHHHHHHCC
Confidence 4567788888999999988887766544
No 35
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=35.15 E-value=2.5e+02 Score=24.45 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=22.9
Q ss_pred CCccEEEEeCCCeEEeecccccccccc
Q 029322 162 SHHPFSILLMPRSLLIFKDDAYSGKCL 188 (195)
Q Consensus 162 ~~~~~~i~L~~gSLlIm~g~ar~~w~H 188 (195)
.+..+.|.-.+|+++|.-|+.=..|+-
T Consensus 244 ~g~Wv~V~p~pgalVVNiGD~Le~wTN 270 (341)
T PLN02984 244 DGEWFNVKPIANTLVVNLGDMMQVISD 270 (341)
T ss_pred CCceEECCCCCCeEEEECChhhhhhcC
Confidence 457788888999999999999888873
No 36
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=33.83 E-value=1.2e+02 Score=26.14 Aligned_cols=29 Identities=10% Similarity=-0.037 Sum_probs=23.8
Q ss_pred CCccEEEEeCCCeEEeeccccccccccCc
Q 029322 162 SHHPFSILLMPRSLLIFKDDAYSGKCLYI 190 (195)
Q Consensus 162 ~~~~~~i~L~~gSLlIm~g~ar~~w~H~I 190 (195)
.+..+.+.-.+|+++|--|++=..|+-|.
T Consensus 235 ~g~Wi~V~p~pg~lVVNiGD~L~~~TNG~ 263 (337)
T PLN02639 235 DGKWVAVNPHPGAFVINIGDQLQALSNGR 263 (337)
T ss_pred CCeEEeccCCCCeEEEechhHHHHHhCCe
Confidence 45778888899999999999888887653
No 37
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=32.87 E-value=53 Score=25.28 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=27.0
Q ss_pred CcceEEeeeeCCCCCccccCCCCCCC-CeEEEEec-CCCeEEEeec
Q 029322 91 AINHILINEYQPNQGIMPHQDGPAYF-PVVAILSL-GSPVVMDFTP 134 (195)
Q Consensus 91 ~~n~~liN~Y~~G~~I~~H~D~~~~~-p~Ia~lSL-gs~~~~~f~~ 134 (195)
.+..|.+..-.||..|.||.|...+. ..-..|.- -..|.|+...
T Consensus 78 ~~~~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v~~ 123 (163)
T PF05118_consen 78 PLGRVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRVGG 123 (163)
T ss_dssp TCEEEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEETT
T ss_pred chhhEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEECC
Confidence 45668888889999999999997544 22222333 2556666543
No 38
>PF08943 CsiD: CsiD; InterPro: IPR015038 This group of proteins consists of various bacterial proteins pertaining to the non-haem Fe(II)-dependent oxygenase family. CsiD of Escherichia coli is induced on carbon starvation. Its expression is sigma-S dependent and additionally requires activation by cAMP-CRP []. The exact function and role of CsiD is unknown, but a putative role may involve the control of utilisation of gamma-aminobutyric acid and glutamate accumulation in general stress adaption []. ; GO: 0005506 iron ion binding; PDB: 2R6S_A 1JR7_A.
Probab=32.61 E-value=30 Score=29.29 Aligned_cols=28 Identities=21% Similarity=0.163 Sum_probs=16.7
Q ss_pred CCCccEEEEeCCCeEEeeccccccccccCcC
Q 029322 161 DSHHPFSILLMPRSLLIFKDDAYSGKCLYID 191 (195)
Q Consensus 161 ~~~~~~~i~L~~gSLlIm~g~ar~~w~H~Ip 191 (195)
....++++.||.||+++... +-|.||=.
T Consensus 250 ~s~~~~~v~vpvG~~lv~NN---~fwLHGR~ 277 (297)
T PF08943_consen 250 NSKNKFSVPVPVGSFLVINN---HFWLHGRD 277 (297)
T ss_dssp T-TT-EEE---TT-EEEEET---TTEEEEE-
T ss_pred cCCCeEEEEcCCCcEEEEee---EEEEeccC
Confidence 35678999999999999874 56888843
No 39
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=32.50 E-value=28 Score=22.74 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=16.5
Q ss_pred EEeeeeCCCCCccccCCCCC
Q 029322 95 ILINEYQPNQGIMPHQDGPA 114 (195)
Q Consensus 95 ~liN~Y~~G~~I~~H~D~~~ 114 (195)
+-...|..|+.+.+|+|...
T Consensus 13 ~~~~~~~~g~~~~~H~D~~~ 32 (70)
T PF13661_consen 13 FRFYRYRRGDFFGWHVDADP 32 (70)
T ss_pred eeEEEcCCCCEeeeeEcCCc
Confidence 44567889999999999974
No 40
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=32.26 E-value=84 Score=27.51 Aligned_cols=28 Identities=14% Similarity=0.046 Sum_probs=21.8
Q ss_pred CCccEEEEeCCCeEEeeccccccccccC
Q 029322 162 SHHPFSILLMPRSLLIFKDDAYSGKCLY 189 (195)
Q Consensus 162 ~~~~~~i~L~~gSLlIm~g~ar~~w~H~ 189 (195)
.+..+.+.-.+|+++|--|+.=..|+-|
T Consensus 257 ~g~Wi~V~p~pgalVVNiGD~L~~~SNG 284 (361)
T PLN02758 257 DNTWVPVHPVPNALVINIGDTLEVLTNG 284 (361)
T ss_pred CCEEEeCCCCCCeEEEEccchhhhhcCC
Confidence 3567778888999999999887777654
No 41
>PLN02216 protein SRG1
Probab=31.63 E-value=2.2e+02 Score=24.85 Aligned_cols=27 Identities=15% Similarity=0.073 Sum_probs=20.9
Q ss_pred CCccEEEEeCCCeEEeecccccccccc
Q 029322 162 SHHPFSILLMPRSLLIFKDDAYSGKCL 188 (195)
Q Consensus 162 ~~~~~~i~L~~gSLlIm~g~ar~~w~H 188 (195)
.+..+.+.-.+|+++|.-|+.=..|+-
T Consensus 255 ~g~Wi~V~p~pgalvVNiGD~L~~~TN 281 (357)
T PLN02216 255 DGKWVSVKPLPNALVVNVGDILEIITN 281 (357)
T ss_pred CCEEEECCCCCCeEEEEcchhhHhhcC
Confidence 356777777889999998888777763
No 42
>PLN02276 gibberellin 20-oxidase
Probab=31.47 E-value=2.5e+02 Score=24.49 Aligned_cols=29 Identities=14% Similarity=0.035 Sum_probs=23.0
Q ss_pred CCccEEEEeCCCeEEeeccccccccccCc
Q 029322 162 SHHPFSILLMPRSLLIFKDDAYSGKCLYI 190 (195)
Q Consensus 162 ~~~~~~i~L~~gSLlIm~g~ar~~w~H~I 190 (195)
.+..+.+.-.+|+++|--|+.=..|+-|.
T Consensus 250 ~g~Wi~V~p~pgalVVNiGD~L~~~TNG~ 278 (361)
T PLN02276 250 DNKWRSVRPRPGALVVNIGDTFMALSNGR 278 (361)
T ss_pred CCEEEEcCCCCCeEEEEcHHHHHHHhCCc
Confidence 45678888889999999999877776553
No 43
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=30.58 E-value=91 Score=27.30 Aligned_cols=27 Identities=15% Similarity=-0.046 Sum_probs=21.5
Q ss_pred CccEEEEeCCCeEEeeccccccccccC
Q 029322 163 HHPFSILLMPRSLLIFKDDAYSGKCLY 189 (195)
Q Consensus 163 ~~~~~i~L~~gSLlIm~g~ar~~w~H~ 189 (195)
+..+.|.-.+|+++|--|+.=..|+-|
T Consensus 256 ~~Wi~V~p~pgalVVNiGD~lq~~SNg 282 (358)
T PLN02254 256 VGWVTVPPVPGSLVVNVGDLLHILSNG 282 (358)
T ss_pred CEEEEcccCCCCEEEEhHHHHHHHhCC
Confidence 367788888999999999877777654
No 44
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=30.03 E-value=61 Score=24.54 Aligned_cols=23 Identities=9% Similarity=0.156 Sum_probs=19.9
Q ss_pred cEEEeCCCCCHHHHHHHHHHHHc
Q 029322 17 TLMYVADFITNIEETQLLNNIYG 39 (195)
Q Consensus 17 Gl~~ipdfis~~e~~~L~~~l~~ 39 (195)
|..+++++|++++-++|.+.+..
T Consensus 5 Gyvvi~~~l~~~~~~~l~~~~~~ 27 (211)
T PF05721_consen 5 GYVVIRNVLSPEEVERLREELDR 27 (211)
T ss_dssp SEEEETTSS-HHHHHHHHHHHHH
T ss_pred cEEEECCcCCHHHHHHHHHHHHH
Confidence 88999999999999999888876
No 45
>PF02832 Flavi_glycop_C: Flavivirus glycoprotein, immunoglobulin-like domain; InterPro: IPR000336 Flaviruses are small, enveloped RNA viruses that use arthropods such as mosquitoes for transmission to their vertebrate hosts, and include Yellow fever virus, West Nile virus, Tick-borne encephalitis virus, Japanese encephalitis virus, and Dengue virus 2 []. Flaviviruses consist of three structural proteins: the core nucleocapsid protein C (IPR001122 from INTERPRO), and the envelope glycoproteins M (IPR000069 from INTERPRO) and E. Glycoprotein E is a class II viral fusion protein that mediates both receptor binding and fusion. Class II viral fusion proteins are found in flaviviruses and alphaviruses, and are structurally distinct from class I fusion proteins from influenza-type viruses and retroviruses. Glycoprotein E is comprised of three domains: domain I (dimerisation domain) is an 8-stranded beta barrel, domain II (central domain) is an elongated domain composed of twelve beta strands and two alpha helices, and domain III (immunoglobulin-like domain) is an IgC-like module with ten beta strands. This entry represents the Ig-like domain III, which contains a putative receptor-binding loop [].; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2R29_A 1PJW_A 4FFY_A 3IRC_A 4ALA_C 3G7T_A 2I69_A 1ZTX_E 2P5P_A 1URZ_F ....
Probab=27.61 E-value=44 Score=23.82 Aligned_cols=24 Identities=4% Similarity=-0.285 Sum_probs=19.7
Q ss_pred CccEEEEeCCCeEEeecc----cccccc
Q 029322 163 HHPFSILLMPRSLLIFKD----DAYSGK 186 (195)
Q Consensus 163 ~~~~~i~L~~gSLlIm~g----~ar~~w 186 (195)
.--+++..|.|+-||.=| ...|+|
T Consensus 68 ~v~IE~epPfGdS~I~VG~g~~~l~~~W 95 (97)
T PF02832_consen 68 KVFIEMEPPFGDSYIIVGVGDDQLKYQW 95 (97)
T ss_dssp EEEEEEE-SSEEEEEEESSSTTTEEEEE
T ss_pred ceEEEEecCCCceEEEEecCCCceeeee
Confidence 345799999999999999 888888
No 46
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=26.67 E-value=80 Score=24.32 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCCC--CCcceEEeeeeCCCCCccccCCC
Q 029322 75 TMITRRIYEKSGLFP--SAINHILINEYQPNQGIMPHQDG 112 (195)
Q Consensus 75 ~~l~~ri~~~~gl~~--~~~n~~liN~Y~~G~~I~~H~D~ 112 (195)
..+++-+.+..|+-. ..|...|||.|..|..--.|.|-
T Consensus 39 Ttf~rgi~~~Lg~~~~V~SPTFtlv~~Y~~~~~~lyH~Dl 78 (149)
T COG0802 39 TTLVRGIAKGLGVDGNVKSPTFTLVEEYEEGRLPLYHFDL 78 (149)
T ss_pred HHHHHHHHHHcCCCCcccCCCeeeehhhcCCCCcEEEEee
Confidence 345666665555432 36999999999999877899997
No 47
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=26.30 E-value=2e+02 Score=24.99 Aligned_cols=29 Identities=7% Similarity=-0.121 Sum_probs=23.6
Q ss_pred CCccEEEEeCCCeEEeeccccccccccCc
Q 029322 162 SHHPFSILLMPRSLLIFKDDAYSGKCLYI 190 (195)
Q Consensus 162 ~~~~~~i~L~~gSLlIm~g~ar~~w~H~I 190 (195)
.+..+.+.-.+|+++|--|+.=..|+.|.
T Consensus 225 ~g~Wi~Vpp~pga~VVNiGD~l~~wTNg~ 253 (335)
T PLN02156 225 DGTWVDVPPDHSSFFVLVGDTLQVMTNGR 253 (335)
T ss_pred CCCEEEccCCCCcEEEEhHHHHHHHhCCe
Confidence 45678888889999999999888887653
No 48
>PLN02485 oxidoreductase
Probab=25.12 E-value=2.5e+02 Score=24.07 Aligned_cols=28 Identities=11% Similarity=-0.104 Sum_probs=22.7
Q ss_pred CCccEEEEeCCCeEEeeccccccccccC
Q 029322 162 SHHPFSILLMPRSLLIFKDDAYSGKCLY 189 (195)
Q Consensus 162 ~~~~~~i~L~~gSLlIm~g~ar~~w~H~ 189 (195)
.+..+.|.-.+|+++|--|+.=..|+.|
T Consensus 234 ~g~Wi~V~p~pg~~vVNiGD~L~~~TnG 261 (329)
T PLN02485 234 SGEWIWAIPIPGTFVCNIGDMLKIWSNG 261 (329)
T ss_pred CCcEEECCCCCCcEEEEhHHHHHHHHCC
Confidence 4567888888999999999988778744
No 49
>PRK02963 carbon starvation induced protein; Validated
Probab=22.13 E-value=73 Score=27.64 Aligned_cols=25 Identities=12% Similarity=-0.063 Sum_probs=19.2
Q ss_pred CCccEEEEeCCCeEEeeccccccccccC
Q 029322 162 SHHPFSILLMPRSLLIFKDDAYSGKCLY 189 (195)
Q Consensus 162 ~~~~~~i~L~~gSLlIm~g~ar~~w~H~ 189 (195)
....+.+.|++|++++|.. +.|.||
T Consensus 263 p~~~~~fkL~pGd~vvfDN---~RVLHG 287 (316)
T PRK02963 263 SKGILSVPVPVGKFLLINN---LFWLHG 287 (316)
T ss_pred chhEEEEecCCceEEEEeC---eEEeeC
Confidence 4456799999999999974 456666
No 50
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=20.85 E-value=90 Score=24.85 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=16.6
Q ss_pred ccEEEEeCCCeEEeeccccccccccCcCccc
Q 029322 164 HPFSILLMPRSLLIFKDDAYSGKCLYIDVLV 194 (195)
Q Consensus 164 ~~~~i~L~~gSLlIm~g~ar~~w~H~Ip~v~ 194 (195)
....-.+.+++.+++.+.-- | |++.+|.
T Consensus 151 ~~~~~l~~p~d~l~~~D~~~--~-H~vtpI~ 178 (195)
T PF10014_consen 151 LFFFTLLEPGDTLLVDDRRV--W-HYVTPIR 178 (195)
T ss_dssp EEEE---STTEEEEEETTTE--E-EEE--EE
T ss_pred ceEEEecCCCCEEEEeCCcc--e-ECCCcee
Confidence 33466788999999998433 4 8888774
Done!