BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029323
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q7S|A Chain A, Crystal Structure Of Bit1
pdb|1Q7S|B Chain B, Crystal Structure Of Bit1
Length = 117
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 80/115 (69%)
Query: 80 DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQ 139
+ K+ LVVR DLKMG GK+A+QC+HAA Y ++ + + +L++WE CGQPK+VV ++
Sbjct: 2 EYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDE 61
Query: 140 QEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 194
+ + L A+ GL ++ DAGRTQ++ GS+TVL IGPGP L+D VTG +L
Sbjct: 62 ETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKL 116
>pdb|1XTY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Peptidyl-Trna
Hydrolase
pdb|1XTY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Peptidyl-Trna
Hydrolase
pdb|1XTY|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Peptidyl-Trna
Hydrolase
pdb|1XTY|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Peptidyl-Trna
Hydrolase
Length = 120
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 4/119 (3%)
Query: 81 LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSD----RHLLRKWEQCGQPKIVVTC 136
+K+ +VVR D+KMG GKIA+Q AHAA + ++ S+ + L +W GQPKI+V
Sbjct: 2 IKMVIVVRSDIKMGKGKIAAQVAHAAVTLVVSIINSNNLRWKEWLNEWLHQGQPKIIVKV 61
Query: 137 KNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 195
+ E+ + AE LP ++ DAG+TQ+ G+ T L IGP P++LVDS+TG +LL
Sbjct: 62 NSLDEIISRAKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLVDSITGDLKLL 120
>pdb|1RLK|A Chain A, Structure Of Conserved Protein Of Unknown Function Ta0108
From Thermoplasma Acidophilum
Length = 117
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 68/114 (59%)
Query: 82 KLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQE 141
K+ + VR+DL MG GKIA+Q AHAA M+ +R + +W GQ KIVV + E
Sbjct: 4 KMVIAVRKDLDMGKGKIAAQVAHAAVTCAIRSMKINRDVFNEWYDEGQRKIVVKVNDLDE 63
Query: 142 MNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 195
+ ++ +A++ G+ +V D G TQV G+ T + +GP + +D +TGK +LL
Sbjct: 64 IMEIKRMADSMGIVNEIVQDRGYTQVEPGTITCIGLGPDEEEKLDKITGKYKLL 117
>pdb|1RZW|A Chain A, The Solution Structure Of The Archaeglobus Fulgidis
Protein Af2095. Northeast Structural Genomics Consortium
Target Gr4
pdb|3ERJ|A Chain A, Crystal Structure Of The Peptidyl-Trna Hydrolase Af2095
From Archaeglobus Fulgidis. Northeast Structural
Genomics Consortium Target Gr4
pdb|3ERJ|B Chain B, Crystal Structure Of The Peptidyl-Trna Hydrolase Af2095
From Archaeglobus Fulgidis. Northeast Structural
Genomics Consortium Target Gr4
Length = 123
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 69/115 (60%), Gaps = 3/115 (2%)
Query: 81 LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQ 140
LK +VVR DLK+ GK+A Q AHAA Y ++SD L RKW GQ K+V+ K+ +
Sbjct: 3 LKQVIVVRDDLKLSRGKLAVQVAHAAIIGY---LKSDSSLRRKWLDEGQKKVVLKVKSLE 59
Query: 141 EMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 195
E+ + AE+ GL T +V DAG T+V G+ T + IGP + +D VTG LL
Sbjct: 60 ELLGIKHKAESLGLVTGLVQDAGLTEVPPGTITAVVIGPDEERKIDKVTGNLPLL 114
>pdb|2ZV3|A Chain A, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
pdb|2ZV3|B Chain B, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
pdb|2ZV3|C Chain C, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
pdb|2ZV3|D Chain D, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
pdb|2ZV3|E Chain E, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
pdb|2ZV3|F Chain F, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
pdb|2ZV3|G Chain G, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
pdb|2ZV3|H Chain H, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
pdb|2ZV3|I Chain I, Crystal Structure Of Project Mj0051 From
Methanocaldococcus Jannaschii Dsm 2661
Length = 115
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 68/115 (59%)
Query: 81 LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQ 140
+K+ +V+R DL MG GK+ +Q HA + + + + + +W + GQ K+VV +++
Sbjct: 1 MKMVVVIRNDLGMGKGKMVAQGGHAIIEAFLDAKRKNPRAVDEWLREGQKKVVVKVNSEK 60
Query: 141 EMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 195
E+ ++ A + GLP ++ DAG TQ+ G+ T +AIGP +D +TG +LL
Sbjct: 61 ELIDIYNKARSEGLPCSIIRDAGHTQLEPGTLTAVAIGPEKDEKIDKITGHLKLL 115
>pdb|1WN2|A Chain A, Crystal Structure Of Project Id Ph1539 From Pyrococcus
Horikoshii Ot3
pdb|2D3K|A Chain A, Structural Study On Project Id Ph1539 From Pyrococcus
Horikoshii Ot3
pdb|2D3K|B Chain B, Structural Study On Project Id Ph1539 From Pyrococcus
Horikoshii Ot3
Length = 121
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 69/114 (60%)
Query: 82 KLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQE 141
K +V R DLK+ GK+A+Q AH A E + R W + GQ K+VV ++++E
Sbjct: 8 KQVIVARADLKLSKGKLAAQVAHGAVTAAFEAYKKKREWFEAWFREGQKKVVVKVESEEE 67
Query: 142 MNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 195
+ KL AE GLP ++ DAG T++ G+ TVLA+GP P+ +VD VTG +LL
Sbjct: 68 LFKLKAEAEKLGLPNALIRDAGLTEIPPGTVTVLAVGPAPEEIVDKVTGNLKLL 121
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 102 CAHAATGMYAELMQSDRHLLRKWEQC-GQPKIVVTCKNQ 139
A+A + Y+ S HL+R W + G P IV C N
Sbjct: 159 TAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNN 197
>pdb|2EED|A Chain A, Solution Structure Of The 24th Filamin Domain From Human
Filamin-B
Length = 101
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 45 MLLDLSKPGKNYVKKKNFLPRKPQEQVSVSSDGDQDLKLALVVRQ 89
L+D SK G N + P P E+VS+ G+Q + VV++
Sbjct: 32 FLVDCSKAGSNMLLIGVHGPTTPCEEVSMKHVGNQQYNVTYVVKE 76
>pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC4|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
Length = 330
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Query: 117 DRHLLRKWEQCGQPKIVVTCKNQQEMNKLWE------VAENTGLPTFVVADAGRTQVSAG 170
D HL+ KI VT + + N W+ VAE TGL F+ + R ++AG
Sbjct: 61 DGHLI-----VNGKKIRVTAE-RDPANLKWDEVGVDVVAEATGL--FLTDETARKHITAG 112
Query: 171 SKTVLAIGP 179
+K V+ GP
Sbjct: 113 AKKVVXTGP 121
>pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 331
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Query: 117 DRHLLRKWEQCGQPKIVVTCKNQQEMNKLWE------VAENTGLPTFVVADAGRTQVSAG 170
D HL+ KI VT + + N W+ VAE TGL F+ + R ++AG
Sbjct: 62 DGHLI-----VNGKKIRVTAE-RDPANLKWDEVGVDVVAEATGL--FLTDETARKHITAG 113
Query: 171 SKTVLAIGP 179
+K V+ GP
Sbjct: 114 AKKVVMTGP 122
>pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of
Glyceraldehyde 3- Phosphate Dehydrogenase From
Escherichia Coli
Length = 331
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Query: 117 DRHLLRKWEQCGQPKIVVTCKNQQEMNKLWE------VAENTGLPTFVVADAGRTQVSAG 170
D HL+ KI VT + + N W+ VAE TGL F+ + R ++AG
Sbjct: 62 DGHLI-----VNGKKIRVTAE-RDPANLKWDEVGVDVVAEATGL--FLTDETARKHITAG 113
Query: 171 SKTVLAIGP 179
+K V+ GP
Sbjct: 114 AKKVVMTGP 122
>pdb|1GAD|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAD|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1DC3|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC3|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC5|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC5|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC6|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes.
pdb|1DC6|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
Length = 330
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Query: 117 DRHLLRKWEQCGQPKIVVTCKNQQEMNKLWE------VAENTGLPTFVVADAGRTQVSAG 170
D HL+ KI VT + + N W+ VAE TGL F+ + R ++AG
Sbjct: 61 DGHLI-----VNGKKIRVTAE-RDPANLKWDEVGVDVVAEATGL--FLTDETARKHITAG 112
Query: 171 SKTVLAIGP 179
+K V+ GP
Sbjct: 113 AKKVVMTGP 121
>pdb|1GAE|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAE|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
Length = 330
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Query: 117 DRHLLRKWEQCGQPKIVVTCKNQQEMNKLWE------VAENTGLPTFVVADAGRTQVSAG 170
D HL+ KI VT + + N W+ VAE TGL F+ + R ++AG
Sbjct: 61 DGHLI-----VNGKKIRVTAE-RDPANLKWDEVGVDVVAEATGL--FLTDETARKHITAG 112
Query: 171 SKTVLAIGP 179
+K V+ GP
Sbjct: 113 AKKVVMTGP 121
>pdb|3QAX|A Chain A, Crystal Structure Anlysis Of The Cpb0502
pdb|3QAX|B Chain B, Crystal Structure Anlysis Of The Cpb0502
Length = 268
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 130 PKIVVTCKNQQEMNKLWEVAENTGLPTFVVADA 162
P + +C+++ + N++W V N P F DA
Sbjct: 17 PLSLTSCESKIDRNRIWIVGTNATYPPFEYVDA 49
>pdb|2D2I|A Chain A, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|B Chain B, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|O Chain O, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|P Chain P, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|Q Chain Q, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|R Chain R, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2DUU|A Chain A, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|B Chain B, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|O Chain O, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|P Chain P, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|Q Chain Q, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|R Chain R, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp
Length = 380
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 144 KLWE---VAENTGLPTFVVADAGRTQVSAGSKTVLAIGPG 180
K W+ V E+TG+ FV A+ + AG+K VL PG
Sbjct: 88 KEWDIDLVIESTGV--FVTAEGASKHIQAGAKKVLITAPG 125
>pdb|3B1J|A Chain A, Crystal Structure Of Dehydrogenese
pdb|3B1J|B Chain B, Crystal Structure Of Dehydrogenese
pdb|3B1K|A Chain A, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|B Chain B, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|G Chain G, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|H Chain H, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B20|A Chain A, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|B Chain B, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|O Chain O, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|P Chain P, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|Q Chain Q, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|R Chain R, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
Length = 339
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 144 KLWE---VAENTGLPTFVVADAGRTQVSAGSKTVLAIGPG 180
K W+ V E+TG+ FV A+ + AG+K VL PG
Sbjct: 88 KEWDIDLVIESTGV--FVTAEGASKHIQAGAKKVLITAPG 125
>pdb|3T0F|A Chain A, Isph:hmbpp (Substrate) Structure Of The E126d Mutant
pdb|3T0F|B Chain B, Isph:hmbpp (Substrate) Structure Of The E126d Mutant
Length = 328
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 121 LRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQ 166
+R + + +VV KN N+L E+A+ G F++ DA Q
Sbjct: 219 VRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQ 264
>pdb|3SZU|A Chain A, Isph:hmbpp Complex Structure Of E126q Mutant
pdb|3SZU|B Chain B, Isph:hmbpp Complex Structure Of E126q Mutant
Length = 328
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 121 LRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQ 166
+R + + +VV KN N+L E+A+ G F++ DA Q
Sbjct: 219 VRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQ 264
>pdb|4EB3|A Chain A, Crystal Structure Of Isph In Complex With Iso-hmbpp
pdb|4EB3|B Chain B, Crystal Structure Of Isph In Complex With Iso-hmbpp
Length = 327
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 121 LRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQ 166
+R + + +VV KN N+L E+A+ G F++ DA Q
Sbjct: 219 VRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQ 264
>pdb|3F7T|A Chain A, Structure Of Active Isph Shows A Novel Fold With A
[3fe-4s] Cluster In The Catalytic Centre
pdb|3F7T|B Chain B, Structure Of Active Isph Shows A Novel Fold With A
[3fe-4s] Cluster In The Catalytic Centre
pdb|3SZL|A Chain A, Isph:ligand Mutants - Wt 70sec
pdb|3SZL|B Chain B, Isph:ligand Mutants - Wt 70sec
pdb|3SZO|A Chain A, Isph:hmbpp Complex After 3 Minutes X-Ray Pre-Exposure
pdb|3SZO|B Chain B, Isph:hmbpp Complex After 3 Minutes X-Ray Pre-Exposure
Length = 328
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 121 LRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQ 166
+R + + +VV KN N+L E+A+ G F++ DA Q
Sbjct: 219 VRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQ 264
>pdb|3KE8|A Chain A, Crystal Structure Of Isph:hmbpp-Complex
pdb|3KE8|B Chain B, Crystal Structure Of Isph:hmbpp-Complex
pdb|3KE9|A Chain A, Crystal Structure Of Isph:intermediate-Complex
pdb|3KE9|B Chain B, Crystal Structure Of Isph:intermediate-Complex
pdb|3KEF|A Chain A, Crystal Structure Of Isph:dmapp-Complex
pdb|3KEF|B Chain B, Crystal Structure Of Isph:dmapp-Complex
pdb|3KEL|A Chain A, Crystal Structure Of Isph:pp Complex
pdb|3KEL|B Chain B, Crystal Structure Of Isph:pp Complex
pdb|3KEM|A Chain A, Crystal Structure Of Isph:ipp Complex
pdb|3KEM|B Chain B, Crystal Structure Of Isph:ipp Complex
Length = 326
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 121 LRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQ 166
+R + + +VV KN N+L E+A+ G F++ DA Q
Sbjct: 217 VRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQ 262
>pdb|4H4C|A Chain A, Isph In Complex With (e)-4-fluoro-3-methylbut-2-enyl
Diphosphate
pdb|4H4C|B Chain B, Isph In Complex With (e)-4-fluoro-3-methylbut-2-enyl
Diphosphate
pdb|4H4D|A Chain A, Isph In Complex With (e)-4-amino-3-methylbut-2-enyl
Diphosphate
pdb|4H4D|B Chain B, Isph In Complex With (e)-4-amino-3-methylbut-2-enyl
Diphosphate
pdb|4H4E|A Chain A, Isph In Complex With (e)-4-mercapto-3-methylbut-2-enyl
Diphosphate
pdb|4H4E|B Chain B, Isph In Complex With (e)-4-mercapto-3-methylbut-2-enyl
Diphosphate
Length = 323
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 121 LRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQ 166
+R + + +VV KN N+L E+A+ G F++ DA Q
Sbjct: 215 VRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQ 260
>pdb|3URK|A Chain A, Isph In Complex With Propynyl Diphosphate (1061)
pdb|3URK|B Chain B, Isph In Complex With Propynyl Diphosphate (1061)
pdb|3UTC|A Chain A, Ec_isph In Complex With (E)-4-Hydroxybut-3-Enyl
Diphosphate
pdb|3UTC|B Chain B, Ec_isph In Complex With (E)-4-Hydroxybut-3-Enyl
Diphosphate
pdb|3UTD|A Chain A, Ec_isph In Complex With 4-Oxopentyl Diphosphate
pdb|3UTD|B Chain B, Ec_isph In Complex With 4-Oxopentyl Diphosphate
pdb|3UV3|A Chain A, Ec_isph In Complex With But-2-Ynyl Diphosphate (1086)
pdb|3UV3|B Chain B, Ec_isph In Complex With But-2-Ynyl Diphosphate (1086)
pdb|3UV6|A Chain A, Ec_isph In Complex With 4-Hydroxybutyl Diphosphate (1301)
pdb|3UV6|B Chain B, Ec_isph In Complex With 4-Hydroxybutyl Diphosphate (1301)
pdb|3UV7|A Chain A, Ec_isph In Complex With Buta-2,3-Dienyl Diphosphate (1300)
pdb|3UV7|B Chain B, Ec_isph In Complex With Buta-2,3-Dienyl Diphosphate (1300)
pdb|3UWM|A Chain A, Ec_isph In Complex With 4-Oxobutyl Diphosphate (1302)
pdb|3UWM|B Chain B, Ec_isph In Complex With 4-Oxobutyl Diphosphate (1302)
Length = 324
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 121 LRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQ 166
+R + + +VV KN N+L E+A+ G F++ DA Q
Sbjct: 215 VRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQ 260
>pdb|2Q3N|B Chain B, Agglutinin From Abrus Precatorius (Apa-I)
pdb|2ZR1|B Chain B, Agglutinin From Abrus Precatorius
pdb|2ZR1|D Chain D, Agglutinin From Abrus Precatorius
Length = 267
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 128 GQPKIVVTCKNQQEMNKLWEV 148
G P I+ CK+Q E+N+LW +
Sbjct: 36 GNPIILWKCKDQLEVNQLWTL 56
>pdb|3T0G|A Chain A, Isph:hmbpp (Substrate) Structure Of The T167c Mutant
pdb|3T0G|B Chain B, Isph:hmbpp (Substrate) Structure Of The T167c Mutant
Length = 328
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 121 LRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQ 166
+R + + +VV KN N+L E+A+ G F++ DA Q
Sbjct: 219 VRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQ 264
>pdb|3ZGL|A Chain A, Crystal Structures Of Escherichia Coli Isph In Complex
With Ambpp A Potent Inhibitor Of The Methylerythritol
Phosphate Pathway
pdb|3ZGL|B Chain B, Crystal Structures Of Escherichia Coli Isph In Complex
With Ambpp A Potent Inhibitor Of The Methylerythritol
Phosphate Pathway
pdb|3ZGN|A Chain A, Crystal Structures Of Escherichia Coli Isph In Complex
With Tmbpp A Potent Inhibitor Of The Methylerythritol
Phosphate Pathway
pdb|3ZGN|B Chain B, Crystal Structures Of Escherichia Coli Isph In Complex
With Tmbpp A Potent Inhibitor Of The Methylerythritol
Phosphate Pathway
Length = 332
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 121 LRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQ 166
+R + + +VV KN N+L E+A+ G F++ DA Q
Sbjct: 223 VRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQ 268
>pdb|1GNW|A Chain A, Structure Of Glutathione S-Transferase
pdb|1GNW|B Chain B, Structure Of Glutathione S-Transferase
pdb|1BX9|A Chain A, Glutathione S-Transferase In Complex With Herbicide
Length = 211
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 11/71 (15%)
Query: 58 KKKNFLPRKPQEQVSVSSDGDQDLKLALVVRQ-----------DLKMGSGKIASQCAHAA 106
KK+ FL R P QV DGD L + + Q +L K SQ A A
Sbjct: 41 KKEPFLSRNPFGQVPAFEDGDLKLFESRAITQYIAHRYENQGTNLLQTDSKNISQYAIMA 100
Query: 107 TGMYAELMQSD 117
GM E Q D
Sbjct: 101 IGMQVEDHQFD 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,161,125
Number of Sequences: 62578
Number of extensions: 194178
Number of successful extensions: 441
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 421
Number of HSP's gapped (non-prelim): 33
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)