Query 029323
Match_columns 195
No_of_seqs 165 out of 609
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 11:04:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3282 Uncharacterized conser 100.0 4E-51 8.7E-56 339.9 13.9 189 1-195 1-190 (190)
2 TIGR00283 arch_pth2 peptidyl-t 100.0 2.1E-47 4.5E-52 298.2 14.7 115 81-195 1-115 (115)
3 cd02430 PTH2 Peptidyl-tRNA hyd 100.0 8.7E-47 1.9E-51 294.6 14.6 115 81-195 1-115 (115)
4 PF01981 PTH2: Peptidyl-tRNA h 100.0 7.2E-47 1.6E-51 293.0 12.6 116 80-195 1-116 (116)
5 PRK04322 peptidyl-tRNA hydrola 100.0 1.9E-46 4.2E-51 291.9 14.0 113 83-195 1-113 (113)
6 cd02407 PTH2_family Peptidyl-t 100.0 4.6E-46 9.9E-51 290.4 14.7 115 81-195 1-115 (115)
7 COG1990 pth2 Peptidyl-tRNA hyd 100.0 2.4E-41 5.3E-46 265.4 10.8 118 78-195 3-122 (122)
8 cd02429 PTH2_like Peptidyl-tRN 100.0 5.1E-39 1.1E-43 251.6 13.1 109 81-195 1-116 (116)
9 KOG3305 Uncharacterized conser 99.8 1.4E-20 3E-25 144.2 4.2 112 78-195 1-119 (121)
10 PF09391 DUF2000: Protein of u 98.2 5.4E-06 1.2E-10 66.5 6.5 109 80-195 1-132 (133)
11 COG4954 Uncharacterized protei 87.6 0.76 1.7E-05 36.5 3.7 67 127-194 54-133 (135)
12 COG3959 Transketolase, N-termi 72.4 39 0.00084 30.1 9.3 43 119-161 196-239 (243)
13 COG5336 Uncharacterized protei 70.6 2 4.4E-05 34.0 0.9 19 31-49 50-68 (116)
14 PF06295 DUF1043: Protein of u 65.9 3.1 6.6E-05 32.9 1.1 13 35-47 4-16 (128)
15 COG1206 Gid NAD(FAD)-utilizing 63.8 11 0.00023 35.8 4.3 57 133-191 94-154 (439)
16 PF02426 MIase: Muconolactone 62.7 11 0.00025 28.5 3.6 74 83-161 1-78 (91)
17 PF06295 DUF1043: Protein of u 60.3 3.8 8.2E-05 32.4 0.7 17 32-48 5-21 (128)
18 TIGR00179 murB UDP-N-acetyleno 57.6 16 0.00036 32.3 4.3 37 123-159 6-42 (284)
19 PRK11677 hypothetical protein; 56.7 4.5 9.7E-05 32.7 0.5 14 33-46 10-23 (134)
20 cd02012 TPP_TK Thiamine pyroph 53.5 85 0.0019 26.9 8.0 44 118-161 181-225 (255)
21 PRK14652 UDP-N-acetylenolpyruv 51.9 24 0.00053 31.6 4.5 41 122-163 28-68 (302)
22 TIGR00942 2a6301s05 Monovalent 51.2 5.5 0.00012 32.0 0.2 24 24-47 4-27 (144)
23 COG1863 MnhE Multisubunit Na+/ 50.3 4.4 9.4E-05 33.6 -0.5 23 25-47 19-41 (158)
24 PF03672 UPF0154: Uncharacteri 50.2 7.5 0.00016 27.9 0.8 15 33-47 7-21 (64)
25 PRK11677 hypothetical protein; 49.0 8.5 0.00018 31.1 1.0 15 34-48 7-21 (134)
26 PF12687 DUF3801: Protein of u 47.4 1.6E+02 0.0034 25.1 8.5 54 120-177 23-76 (204)
27 PF00456 Transketolase_N: Tran 46.9 33 0.00071 31.4 4.6 42 120-161 198-241 (332)
28 PRK12436 UDP-N-acetylenolpyruv 45.4 34 0.00075 30.7 4.4 35 124-158 31-65 (305)
29 PRK13905 murB UDP-N-acetylenol 44.4 34 0.00073 30.4 4.2 41 122-163 23-63 (298)
30 PRK13906 murB UDP-N-acetylenol 44.2 35 0.00075 30.7 4.3 36 123-158 30-65 (307)
31 PRK14649 UDP-N-acetylenolpyruv 42.4 37 0.00081 30.3 4.2 37 122-158 13-49 (295)
32 COG3105 Uncharacterized protei 40.7 16 0.00035 29.8 1.4 13 35-47 13-25 (138)
33 PRK13903 murB UDP-N-acetylenol 40.1 46 0.001 30.9 4.5 37 122-158 25-61 (363)
34 PF01565 FAD_binding_4: FAD bi 39.8 45 0.00098 25.2 3.8 36 131-167 2-37 (139)
35 PRK00046 murB UDP-N-acetylenol 39.6 41 0.00089 30.9 4.0 37 122-158 13-49 (334)
36 PTZ00222 60S ribosomal protein 39.1 29 0.00063 31.2 2.9 65 125-189 144-216 (263)
37 PRK08382 putative monovalent c 38.8 8.8 0.00019 32.9 -0.4 24 24-47 49-72 (201)
38 PF12072 DUF3552: Domain of un 38.6 15 0.00033 30.9 1.0 15 34-48 7-21 (201)
39 PRK14648 UDP-N-acetylenolpyruv 37.6 70 0.0015 29.8 5.2 37 122-158 22-58 (354)
40 cd05008 SIS_GlmS_GlmD_1 SIS (S 36.8 81 0.0018 23.2 4.7 38 140-177 60-97 (126)
41 PRK14650 UDP-N-acetylenolpyruv 35.8 49 0.0011 30.0 3.9 37 122-158 25-61 (302)
42 PRK10132 hypothetical protein; 35.2 13 0.00029 28.9 0.1 23 19-48 83-105 (108)
43 PRK14894 glycyl-tRNA synthetas 35.1 35 0.00077 33.6 3.0 44 135-178 469-517 (539)
44 PF09413 DUF2007: Domain of un 35.0 74 0.0016 21.5 3.9 33 132-165 2-34 (67)
45 PRK01844 hypothetical protein; 34.9 18 0.00039 26.5 0.8 16 32-47 13-28 (72)
46 PF13373 DUF2407_C: DUF2407 C- 34.2 17 0.00036 29.5 0.5 15 33-47 92-106 (140)
47 cd04906 ACT_ThrD-I_1 First of 33.8 79 0.0017 22.6 4.0 32 127-158 39-71 (85)
48 PF12732 YtxH: YtxH-like prote 33.7 22 0.00047 25.2 1.0 16 33-48 5-20 (74)
49 PRK14653 UDP-N-acetylenolpyruv 33.3 79 0.0017 28.4 4.8 36 123-159 27-62 (297)
50 cd06557 KPHMT-like Ketopantoat 33.0 2.3E+02 0.005 25.0 7.6 24 89-112 78-102 (254)
51 TIGR00580 mfd transcription-re 32.4 1.5E+02 0.0032 31.1 7.0 58 120-181 228-285 (926)
52 PRK00523 hypothetical protein; 32.3 21 0.00046 26.2 0.8 15 33-47 15-29 (72)
53 cd08362 BphC5-RrK37_N_like N-t 31.9 1.9E+02 0.004 20.5 6.4 29 128-156 58-86 (120)
54 COG3856 Sbp Uncharacterized co 31.7 25 0.00055 27.6 1.2 19 34-52 5-23 (113)
55 cd07241 Glo_EDI_BRP_like_3 Thi 31.3 87 0.0019 22.2 4.0 29 128-156 70-98 (125)
56 cd05014 SIS_Kpsf KpsF-like pro 31.2 1.3E+02 0.0029 22.1 5.1 38 140-177 61-98 (128)
57 TIGR00204 dxs 1-deoxy-D-xylulo 31.2 5.3E+02 0.011 25.5 10.6 38 124-161 234-272 (617)
58 smart00450 RHOD Rhodanese Homo 30.7 1.1E+02 0.0025 20.5 4.3 45 122-166 49-93 (100)
59 cd01449 TST_Repeat_2 Thiosulfa 30.6 1.1E+02 0.0024 22.3 4.4 38 128-165 77-114 (118)
60 PRK12651 putative monovalent c 29.9 15 0.00032 29.9 -0.4 25 24-48 18-42 (158)
61 cd08346 PcpA_N_like N-terminal 29.4 88 0.0019 22.1 3.7 29 128-156 73-101 (126)
62 COG3763 Uncharacterized protei 29.1 8.6 0.00019 28.1 -1.7 25 23-47 4-28 (71)
63 cd04885 ACT_ThrD-I Tandem C-te 29.0 93 0.002 21.1 3.6 28 128-155 38-65 (68)
64 TIGR03266 methan_mark_1 putati 28.5 3.8E+02 0.0082 24.7 8.5 81 88-177 151-232 (376)
65 cd02193 PurL Formylglycinamide 27.9 1.2E+02 0.0026 26.2 4.9 38 121-159 232-269 (272)
66 PRK12856 hypothetical protein; 27.8 1.1E+02 0.0023 23.7 4.1 42 139-180 59-100 (103)
67 COG0021 TktA Transketolase [Ca 26.9 2E+02 0.0044 29.2 6.7 52 118-180 201-254 (663)
68 cd08347 PcpA_C_like C-terminal 26.6 2.7E+02 0.0058 21.9 6.3 67 128-194 65-139 (157)
69 TIGR03127 RuMP_HxlB 6-phospho 26.4 1.4E+02 0.0031 23.7 4.8 38 140-177 86-123 (179)
70 PRK12855 hypothetical protein; 25.6 1.3E+02 0.0028 23.2 4.2 42 139-180 59-100 (103)
71 PRK08965 putative monovalent c 25.6 19 0.00042 29.4 -0.5 25 24-48 22-46 (162)
72 PRK12652 putative monovalent c 25.4 21 0.00045 33.0 -0.3 24 24-47 183-206 (357)
73 cd07240 ED_TypeI_classII_N N-t 25.4 1.5E+02 0.0033 20.7 4.4 30 128-157 57-86 (117)
74 PF08219 TOM13: Outer membrane 25.1 30 0.00066 25.7 0.5 9 33-41 44-52 (77)
75 PF09472 MtrF: Tetrahydrometha 25.1 40 0.00086 24.1 1.1 17 31-47 39-55 (64)
76 COG1111 MPH1 ERCC4-like helica 25.0 1.3E+02 0.0027 29.8 4.8 76 86-170 117-200 (542)
77 PRK08383 putative monovalent c 24.9 21 0.00045 29.7 -0.4 21 28-48 26-46 (168)
78 COG0812 MurB UDP-N-acetylmuram 24.7 98 0.0021 28.2 3.8 36 123-158 14-49 (291)
79 PF05957 DUF883: Bacterial pro 24.5 46 0.00099 24.4 1.4 22 20-48 71-92 (94)
80 TIGR03221 muco_delta muconolac 24.1 1.1E+02 0.0023 23.4 3.3 72 85-161 2-77 (90)
81 CHL00067 rps2 ribosomal protei 24.1 2E+02 0.0043 24.9 5.5 55 128-188 160-214 (230)
82 cd00861 ProRS_anticodon_short 23.8 2.1E+02 0.0045 19.9 4.8 50 125-178 28-77 (94)
83 PRK00311 panB 3-methyl-2-oxobu 23.8 3.9E+02 0.0084 23.8 7.4 24 89-112 81-105 (264)
84 PF09527 ATPase_gene1: Putativ 23.6 33 0.00072 22.8 0.5 18 32-49 9-26 (55)
85 PF02829 3H: 3H domain; Inter 23.6 82 0.0018 24.0 2.7 28 127-154 69-96 (98)
86 KOG1232 Proteins containing th 23.5 1.6E+02 0.0035 28.5 5.1 46 126-173 86-131 (511)
87 PF02624 YcaO: YcaO-like famil 23.2 4.6E+02 0.01 22.7 7.7 67 107-178 125-193 (332)
88 cd09012 Glo_EDI_BRP_like_24 Th 22.8 1.3E+02 0.0028 21.9 3.6 26 130-155 70-95 (124)
89 cd07255 Glo_EDI_BRP_like_12 Th 22.6 1.4E+02 0.0031 21.3 3.8 30 127-156 63-92 (125)
90 cd07242 Glo_EDI_BRP_like_6 Thi 22.6 1.6E+02 0.0035 21.2 4.1 30 127-156 67-96 (128)
91 PRK06724 hypothetical protein; 22.5 1.4E+02 0.003 22.8 3.8 29 128-156 63-91 (128)
92 PRK13937 phosphoheptose isomer 22.4 1.9E+02 0.0042 23.6 4.9 40 139-178 119-158 (188)
93 cd08360 MhqB_like_C C-terminal 22.2 1.5E+02 0.0033 22.1 4.0 31 127-157 61-91 (134)
94 PF04273 DUF442: Putative phos 21.8 1.3E+02 0.0029 23.0 3.6 43 117-159 16-63 (110)
95 PF04093 MreD: rod shape-deter 21.8 50 0.0011 25.7 1.3 19 34-52 51-69 (160)
96 PF06983 3-dmu-9_3-mt: 3-demet 21.6 1.2E+02 0.0026 23.2 3.3 25 129-153 72-96 (116)
97 COG1184 GCD2 Translation initi 21.6 2.2E+02 0.0047 26.1 5.4 34 129-162 146-179 (301)
98 COG0083 ThrB Homoserine kinase 21.4 6.3E+02 0.014 23.0 8.8 93 77-180 157-262 (299)
99 PRK04020 rps2P 30S ribosomal p 21.3 2.4E+02 0.0052 24.3 5.4 54 129-188 114-167 (204)
100 COG5304 Uncharacterized protei 21.2 1.1E+02 0.0025 23.3 3.0 29 128-157 50-78 (92)
101 PF00578 AhpC-TSA: AhpC/TSA fa 21.1 3.2E+02 0.0069 19.5 6.5 42 120-164 51-92 (124)
102 TIGR03426 shape_MreD rod shape 21.1 58 0.0013 25.4 1.5 17 35-51 49-65 (154)
103 TIGR00441 gmhA phosphoheptose 21.0 2.5E+02 0.0055 22.1 5.2 38 140-177 93-130 (154)
104 cd08361 PpCmtC_N N-terminal do 21.0 1.7E+02 0.0037 21.5 4.0 26 131-156 62-87 (124)
105 PF15608 PELOTA_1: PELOTA RNA 20.9 2.1E+02 0.0046 22.1 4.5 32 130-161 57-88 (100)
106 PF10166 DUF2368: Uncharacteri 20.8 51 0.0011 26.5 1.1 25 29-53 73-97 (131)
107 COG0052 RpsB Ribosomal protein 20.7 3.2E+02 0.0069 24.5 6.1 55 128-188 155-209 (252)
108 PF13899 Thioredoxin_7: Thiore 20.5 3E+02 0.0065 18.9 6.2 55 102-162 28-82 (82)
109 PRK10404 hypothetical protein; 20.4 61 0.0013 24.8 1.4 21 20-47 78-98 (101)
110 KOG1155 Anaphase-promoting com 20.3 76 0.0016 31.3 2.3 32 102-133 379-410 (559)
111 PF11823 DUF3343: Protein of u 20.2 2.9E+02 0.0063 19.1 4.8 59 130-190 2-60 (73)
112 PF13807 GNVR: G-rich domain o 20.2 60 0.0013 23.2 1.3 17 33-49 62-78 (82)
113 COG4575 ElaB Uncharacterized c 20.2 63 0.0014 25.3 1.4 23 19-48 80-102 (104)
No 1
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4e-51 Score=339.93 Aligned_cols=189 Identities=42% Similarity=0.631 Sum_probs=146.9
Q ss_pred CCCCCCCChhhhhHhhhhcccceeeeeccCCCccchhhHHHHhhhhhhcCCCCcccccccC-CCCCCCcccccccCCCCC
Q 029323 1 MWASQQNSSQLSNKKQQKQEKVSLAVSFRPENFIPGLVIGFIFGMLLDLSKPGKNYVKKKN-FLPRKPQEQVSVSSDGDQ 79 (195)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 79 (195)
||++..|+++.++. .+.+--+..+|.-.+=+ ++-+||.++...+ +.-...++..+ .+.++.+.++....+..+
T Consensus 1 m~~~~~~~~~~~~~---~~~~~~v~~a~g~~~~~-~~~i~~ai~~~~~--~~~~~~~~~~s~~~~sk~~~e~~~l~~~~~ 74 (190)
T KOG3282|consen 1 MEPKSVNSEYLIAL---RQLGLAVGAAVGACIGT-SLRIGFAIASISD--KSVASPFDESSVSSDSKASSESEVLGDLKG 74 (190)
T ss_pred CCcccccHHHHhhh---HhhhHHHHHHHHHHhhh-ceeeehhhhhhhh--hhccCccccccccccccchhhhhcccCcCC
Confidence 78888888888776 33222222222222222 2233333332222 11111222111 112344555666778889
Q ss_pred CeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEE
Q 029323 80 DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVV 159 (195)
Q Consensus 80 ~~kmviVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V 159 (195)
++|||||||+||+|++||||||||||++++|.++++++|+.+++|+++||+||||+|+|+++|.+|++.|+..|+++++|
T Consensus 75 ~~KMvLVVR~DLkMgkGKIAAQc~HAalg~Y~~l~~~~p~ll~~We~~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~i 154 (190)
T KOG3282|consen 75 NFKMVLVVRNDLKMGKGKIAAQCAHAALGVYKHLMQRDPELLRRWENCGQAKIVVKAESEEELMELQKDAKKLGLYTHLI 154 (190)
T ss_pred ceEEEEEEeccCCCccchhHHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCceEEEEcCCHHHHHHHHHHHHHcCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCccccCCCeeEEEEcCCCccchhhhcCCCCCC
Q 029323 160 ADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 195 (195)
Q Consensus 160 ~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl 195 (195)
+|||||||+|||.||++|||+|.+.||.||||||||
T Consensus 155 ~DAGrTQIa~gS~TVl~Igpg~~~~id~VTG~LKL~ 190 (190)
T KOG3282|consen 155 QDAGRTQIAPGSRTVLGIGPGPVEVIDSVTGHLKLY 190 (190)
T ss_pred EcCCccccCCCCeEEEEEcCccHHHHhhcCcceeeC
Confidence 999999999999999999999999999999999997
No 2
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=100.00 E-value=2.1e-47 Score=298.20 Aligned_cols=115 Identities=38% Similarity=0.629 Sum_probs=112.6
Q ss_pred eeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEE
Q 029323 81 LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVA 160 (195)
Q Consensus 81 ~kmviVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~ 160 (195)
+||||+||+||+||+||+||||||||+++|+++++.+++.+++|+..||+||||+++|+++|++|.++|++.||++++|+
T Consensus 1 ~k~vlvVr~DL~M~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~G~~KVvlk~~~~~el~~l~~~a~~~~l~~~~v~ 80 (115)
T TIGR00283 1 MKMVIVIRDDLGMGKGKIAAQVCHAAIIGFLKSKRKNPSLRRKWLDEGQKKVVLKVNSLEELLEIYHKAESLGLVTGLIR 80 (115)
T ss_pred CeEEEEEeCCCCCChhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 59999999999999999999999999999998888889999999999999999999999999999999999999999999
Q ss_pred cCCCccccCCCeeEEEEcCCCccchhhhcCCCCCC
Q 029323 161 DAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 195 (195)
Q Consensus 161 DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl 195 (195)
|||||||||||.|||||||+|++.||+||||||||
T Consensus 81 DAG~Tei~pgs~TvlaigP~~~~~id~itg~LkLl 115 (115)
T TIGR00283 81 DAGHTQIPPGTITAVGIGPDEDEKIDKITGDLKLL 115 (115)
T ss_pred cCCcceeCCCCcEEEEECCCCHHHHHHHhCCCccC
Confidence 99999999999999999999999999999999997
No 3
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=100.00 E-value=8.7e-47 Score=294.62 Aligned_cols=115 Identities=54% Similarity=0.878 Sum_probs=112.9
Q ss_pred eeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEE
Q 029323 81 LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVA 160 (195)
Q Consensus 81 ~kmviVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~ 160 (195)
+||||+||+||+||+||+||||||||+++|..+++.+++.+++|++.||+||||+++|+++|.+|.++|++.||++++|+
T Consensus 1 ~K~vivVr~DL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~G~~KiVl~~~~~~el~~l~~~a~~~~l~~~~v~ 80 (115)
T cd02430 1 YKMVLVVRNDLKMGKGKIAAQCAHAALGAYKKAMKSNPELLRAWEREGQKKIVLKVNSEEELLELKKKAKSLGLPTSLIQ 80 (115)
T ss_pred CEEEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcEEEEecCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 69999999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred cCCCccccCCCeeEEEEcCCCccchhhhcCCCCCC
Q 029323 161 DAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 195 (195)
Q Consensus 161 DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl 195 (195)
||||||+||||.|||||||+|++.||+||||||||
T Consensus 81 DAG~Tev~~gt~T~laigP~~~~~i~~itg~LkL~ 115 (115)
T cd02430 81 DAGRTQIAPGTITVLGIGPAPEELIDKVTGHLKLL 115 (115)
T ss_pred eCCCcccCCCCceEEEeCCCCHHHHHHhhCCCcCC
Confidence 99999999999999999999999999999999997
No 4
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=100.00 E-value=7.2e-47 Score=293.03 Aligned_cols=116 Identities=51% Similarity=0.863 Sum_probs=110.9
Q ss_pred CeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEE
Q 029323 80 DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVV 159 (195)
Q Consensus 80 ~~kmviVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V 159 (195)
|+|||||||+||+||+||+||||||||+++|+++.+.+++.++.|..+||+||||+++|+++|++|.++|+..||++++|
T Consensus 1 ~~k~vivVr~DL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~Kivlkv~~e~~L~~l~~~a~~~gl~~~~i 80 (116)
T PF01981_consen 1 ELKMVIVVRKDLKMSKGKIAAQCAHAAVAAYAKLHEDDPEWLREWENNGQKKIVLKVPSEEELLELAKKAKEAGLPHYLI 80 (116)
T ss_dssp SEEEEEEEESSSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-SEEEE
T ss_pred CeEEEEEEECCCCCCcchHHHHHHHHHHHHHHHhhhcCHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHCCCCEEEE
Confidence 68999999999999999999999999999999988788899999999999999999999999999999999999999999
Q ss_pred EcCCCccccCCCeeEEEEcCCCccchhhhcCCCCCC
Q 029323 160 ADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 195 (195)
Q Consensus 160 ~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl 195 (195)
+|||||||||||.|||||||+|++.||+||||||||
T Consensus 81 ~Dag~Tei~pgs~TvlaigP~~~~~i~~it~~LkL~ 116 (116)
T PF01981_consen 81 RDAGRTEIPPGSVTVLAIGPAPKEEIDKITGHLKLL 116 (116)
T ss_dssp EETSSSSSSTTCEEEEEEEEEEHHHHHHHHTTSEB-
T ss_pred EECCCCcCCCCCeEEEEECcCCHHHHHHHhCcCcCC
Confidence 999999999999999999999999999999999997
No 5
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=100.00 E-value=1.9e-46 Score=291.90 Aligned_cols=113 Identities=45% Similarity=0.724 Sum_probs=110.9
Q ss_pred EEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcC
Q 029323 83 LALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADA 162 (195)
Q Consensus 83 mviVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DA 162 (195)
|||+||+||+||+||+||||||||+++|.++++++++++++|+..||+||||+++|+++|++|.++|++.||++++|+||
T Consensus 1 ~vivVr~DL~M~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DA 80 (113)
T PRK04322 1 QVIVVRTDLKMGKGKLAAQVAHAAVSAYEKADKSNREWLEEWLNEGQKKVVLKVNSEEELLELKEKAERLGLPTALIRDA 80 (113)
T ss_pred CEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 79999999999999999999999999999888888999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCeeEEEEcCCCccchhhhcCCCCCC
Q 029323 163 GRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 195 (195)
Q Consensus 163 GrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl 195 (195)
|||||||||.|||||||+|++.||+||||||||
T Consensus 81 G~Tei~~gs~TvlaigP~~~~~i~~itg~LkLl 113 (113)
T PRK04322 81 GLTQLPPGTVTALGIGPAPEEKIDKITGDLKLL 113 (113)
T ss_pred CCcccCCCCcEEEEeCCCCHHHHHHhhCCCcCC
Confidence 999999999999999999999999999999997
No 6
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=100.00 E-value=4.6e-46 Score=290.35 Aligned_cols=115 Identities=51% Similarity=0.815 Sum_probs=112.6
Q ss_pred eeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEE
Q 029323 81 LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVA 160 (195)
Q Consensus 81 ~kmviVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~ 160 (195)
+|||||||+||+||+||+||||||||+++|+++++.++..++.|+.+||+||||+++|+++|++|.++|++.||++++|+
T Consensus 1 ~k~vivVr~dl~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~KvVl~v~~~~~l~~l~~~a~~~gl~~~~v~ 80 (115)
T cd02407 1 YKMVIVVRNDLKMGKGKIAAQCAHAALAAYKKAMKDPPTLLRAWELEGQKKVVLKVPSEEELLELAKKAKELGLPHSLIQ 80 (115)
T ss_pred CEEEEEEECCCCCChhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHhCCCcEEEEECCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 69999999999999999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred cCCCccccCCCeeEEEEcCCCccchhhhcCCCCCC
Q 029323 161 DAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 195 (195)
Q Consensus 161 DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl 195 (195)
|||||||||||.|||||||+|++.||+||||||||
T Consensus 81 DAG~Tqi~~gt~TvlaigP~~~~~i~~itg~LkL~ 115 (115)
T cd02407 81 DAGRTQIPPGTPTVLAIGPAPKEKVDKVTGHLKLL 115 (115)
T ss_pred ECCCcccCCCCceEEEECCCCHHHHHHHcCcCcCC
Confidence 99999999999999999999999999999999997
No 7
>COG1990 pth2 Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-41 Score=265.42 Aligned_cols=118 Identities=43% Similarity=0.684 Sum_probs=113.6
Q ss_pred CCCeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhC--HHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCC
Q 029323 78 DQDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSD--RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLP 155 (195)
Q Consensus 78 ~~~~kmviVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~--~~~l~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~ 155 (195)
..++||+|+||.||+|++||+|||||||++.++..+++++ ++++++|++.||+||||+|+++++|.+++++|+..|+|
T Consensus 3 ~~~~k~vIvVr~Dl~m~kGKiaaQvaHaa~~~~~~~~~~~~~~~~~~eWl~~Gq~Kivlkv~~~~eL~~~~~~A~~~gl~ 82 (122)
T COG1990 3 RGQYKMVIVVRDDLKMSKGKLAAQVAHAAVDAAKLAIKSTELDEWLDEWLREGQKKIVLKVGSLDELLELHQKAESLGLP 82 (122)
T ss_pred cccceeEEEEecccccccchHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHHHHHcCCh
Confidence 3579999999999999999999999999999999998766 47899999999999999999999999999999999999
Q ss_pred eEEEEcCCCccccCCCeeEEEEcCCCccchhhhcCCCCCC
Q 029323 156 TFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 195 (195)
Q Consensus 156 ~~~V~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl 195 (195)
+.+|+|||+|||||||.|||+|||+|.+.+|.|||+||||
T Consensus 83 ~~~i~DaG~TqippGt~T~L~iGP~~~~~iD~iTG~lkL~ 122 (122)
T COG1990 83 TALIRDAGRTQIPPGTITVLGIGPAPEEVIDKITGDLKLL 122 (122)
T ss_pred HHHHHhcCccccCCCCeEEEEECCCchhhhcccccccccC
Confidence 9999999999999999999999999999999999999997
No 8
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=100.00 E-value=5.1e-39 Score=251.55 Aligned_cols=109 Identities=22% Similarity=0.265 Sum_probs=101.2
Q ss_pred eeEEEEEeCCC----CCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHH---HhCCCCeEEEecCCHHHHHHHHHHHHHCC
Q 029323 81 LKLALVVRQDL----KMGSGKIASQCAHAATGMYAELMQSDRHLLRKW---EQCGQPKIVVTCKNQQEMNKLWEVAENTG 153 (195)
Q Consensus 81 ~kmviVVR~DL----~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W---~~~G~~KIVLkv~~e~eL~eL~~~A~~~g 153 (195)
+.||||||+|| +|++||+||||||||+++|+. .+++++++++| ..+||+||||+|+||++|.+|.++|++.|
T Consensus 1 ~vq~ivVR~DL~~~~~m~kGkiaAQ~aHAav~a~~~-~~~~~~~~~~~~~~~~~g~~KVVLkv~~e~eL~~L~~~a~~~g 79 (116)
T cd02429 1 LVQYVILRRDLQTKLSWPLGAVIAQACHAAVAVIHL-FRSDPDTKKYAYLSNLDNMHKVVLEVPDEAALKNLSSKLTENS 79 (116)
T ss_pred CEEEEEEeccccccCCCCccHHHHHHHHHHHHHHHH-HhhCchHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHcC
Confidence 47999999999 999999999999999999865 45678876666 23899999999999999999999999999
Q ss_pred CCeEEEEcCCCccccCCCeeEEEEcCCCccchhhhcCCCCCC
Q 029323 154 LPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 195 (195)
Q Consensus 154 l~~~~V~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl 195 (195)
|++++| ||+||||.|||||||+|++.||++|||||||
T Consensus 80 i~~~l~-----te~p~gt~T~LaigP~~~~~id~it~~LkLl 116 (116)
T cd02429 80 IKHKLW-----IEQPENIPTCIALKPYPKETVASYLKKLKLL 116 (116)
T ss_pred CCeEEE-----EEcCCCCceEEEeCCCCHHHHHHHhCCCcCC
Confidence 999997 8999999999999999999999999999997
No 9
>KOG3305 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.4e-20 Score=144.18 Aligned_cols=112 Identities=21% Similarity=0.261 Sum_probs=100.2
Q ss_pred CCCeeEEEEEeCCC----CCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHH---hCCCCeEEEecCCHHHHHHHHHHHH
Q 029323 78 DQDLKLALVVRQDL----KMGSGKIASQCAHAATGMYAELMQSDRHLLRKWE---QCGQPKIVVTCKNQQEMNKLWEVAE 150 (195)
Q Consensus 78 ~~~~kmviVVR~DL----~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~---~~G~~KIVLkv~~e~eL~eL~~~A~ 150 (195)
++.+.||||+|+|| .|+.|.+++|.|||+.++++. .+.++..+..-. .++|+||+|++++|..|..|.++.+
T Consensus 1 ~~~ivqyivlr~dl~~alswplgaviaq~chas~a~i~~-~~dd~~tl~y~dpq~id~mhkv~le~k~es~lm~lseklk 79 (121)
T KOG3305|consen 1 DDNIVQYIVLRRDLIDALSWPLGAVIAQGCHASAAAIHL-FKDDADTLAYCDPQDIDNMHKVTLEAKDESALMKLSEKLK 79 (121)
T ss_pred CCcceeEeeehHhhhhhccCchhHHHHhhhhHHHHHHHh-ccCCcchhhcCChhhhhhhhheeeeecChHHHHhHHHHHh
Confidence 36789999999997 689999999999999998865 456676664332 4789999999999999999999999
Q ss_pred HCCCCeEEEEcCCCccccCCCeeEEEEcCCCccchhhhcCCCCCC
Q 029323 151 NTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 195 (195)
Q Consensus 151 ~~gl~~~~V~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl 195 (195)
..+|.+.+|. |+|++..||||+.|+|++.+.++++||||+
T Consensus 80 ~~~i~hklwi-----eqpeniptcia~kpy~k~~v~~f~k~lkl~ 119 (121)
T KOG3305|consen 80 EGEIKHKLWI-----EQPENIPTCIALKPYPKDQVHKFFKHLKLC 119 (121)
T ss_pred cCCchhhhhh-----cCccCCCceeecCCCcHHHHHHHHHHHHhh
Confidence 9999999997 799999999999999999999999999985
No 10
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=98.16 E-value=5.4e-06 Score=66.49 Aligned_cols=109 Identities=25% Similarity=0.325 Sum_probs=75.5
Q ss_pred CeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHH---------HHHH-hCCCCeEEEecCCHHHHHHHHHHH
Q 029323 80 DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLL---------RKWE-QCGQPKIVVTCKNQQEMNKLWEVA 149 (195)
Q Consensus 80 ~~kmviVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l---------~~W~-~~G~~KIVLkv~~e~eL~eL~~~A 149 (195)
+.|.|+|||.||. .|.++-=+||-+++.-... |+.+ ..|. ...++-+||+. |.++|.+|.++|
T Consensus 1 d~K~viVv~~~Lp--~g~~~NaaA~L~~~Lg~~~----p~l~G~~~~D~~g~~h~gi~~~PipIL~a-~~~~L~~l~~~a 73 (133)
T PF09391_consen 1 DTKCVIVVDEDLP--PGLAANAAAVLGLGLGAAH----PELVGEDYRDADGNAHPGISHIPIPILKA-NSEQLRELRQKA 73 (133)
T ss_dssp SEEEEEEEETTS---HHHHHHHHHHHHHHHHHH-----GGGB-S-EE-TTS-EE---BSS-EEEEEE--HHHHHHHHHHH
T ss_pred CcEEEEEECCCCh--HHHHHHHHHHHHHHHhccC----ccccCCcccCCCCCCCCCCCCcCeEEEEc-CHHHHHHHHHHH
Confidence 5799999999987 8899999999988866542 2221 1111 35689999999 679999999999
Q ss_pred HHCCCCeEEEEcCCC------------ccccCCCeeEEEEc-CCCccchhhhcCCCCCC
Q 029323 150 ENTGLPTFVVADAGR------------TQVSAGSKTVLAIG-PGPKSLVDSVTGKQRLL 195 (195)
Q Consensus 150 ~~~gl~~~~V~DAGr------------Tev~pgs~TvlAIG-P~p~~~Id~iTg~LKLl 195 (195)
.+.+|.+....|..+ -+.++.....++|+ -+|+..|+++||+|+||
T Consensus 74 ~~~~i~~~~F~~~aq~~~~y~e~~~~~~~~~~~~l~y~Gi~L~G~kk~V~kltg~l~L~ 132 (133)
T PF09391_consen 74 LEREITVVDFTDEAQSTGHYEEYRAAVAATPEEDLEYVGIALFGPKKAVDKLTGSLPLL 132 (133)
T ss_dssp HHTT---EEEEGGGGG---HHHHHHHHTT--TTT--EEEEEEEEEHHHHHHHCTT-EE-
T ss_pred HHCCCeEEeChHHHhhCCCHHHHHHHHhcCChhhccEEEEEEECCHHHHHHHhcCCCCC
Confidence 999998888888765 24456677777776 67899999999999986
No 11
>COG4954 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.63 E-value=0.76 Score=36.51 Aligned_cols=67 Identities=24% Similarity=0.346 Sum_probs=52.3
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcC----C--------CccccCCCeeEEEEc-CCCccchhhhcCCCC
Q 029323 127 CGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADA----G--------RTQVSAGSKTVLAIG-PGPKSLVDSVTGKQR 193 (195)
Q Consensus 127 ~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DA----G--------rTev~pgs~TvlAIG-P~p~~~Id~iTg~LK 193 (195)
+=|+.|||.. |++.|..+-..|-++++++.+-.+. | |.|..|.+.-|++|. -+.+..+|+||+.-|
T Consensus 54 siqpvivls~-dqetl~aihrraler~vttslyieemfstghdaanravfa~f~pd~akvvgialraekkivdkitkgar 132 (135)
T COG4954 54 SIQPVIVLSG-DQETLKAIHRRALERKVTTSLYIEEMFSTGHDAANRAVFAEFGPDSAKVVGIALRAEKKIVDKITKGAR 132 (135)
T ss_pred ccceEEEEeC-CHHHHHHHHHHHHhcCCCcceeHHHHHhccchHHHHHHHHhhCCCcceeeeeehhhhhHHHHHHccccc
Confidence 3478888755 6899999999999999998886532 1 257778898888875 567889999999876
Q ss_pred C
Q 029323 194 L 194 (195)
Q Consensus 194 L 194 (195)
+
T Consensus 133 m 133 (135)
T COG4954 133 M 133 (135)
T ss_pred c
Confidence 5
No 12
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=72.45 E-value=39 Score=30.09 Aligned_cols=43 Identities=33% Similarity=0.482 Sum_probs=36.3
Q ss_pred HHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHH-CCCCeEEEEc
Q 029323 119 HLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAEN-TGLPTFVVAD 161 (195)
Q Consensus 119 ~~l~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~-~gl~~~~V~D 161 (195)
++-..|+.-|...+-++..|.+++.+..++++. .|-|+++|.|
T Consensus 196 pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~rP~~IIa~ 239 (243)
T COG3959 196 PLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGRPTVIIAK 239 (243)
T ss_pred hhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhccCCCCeEEEEe
Confidence 356899999999988888899999997777766 4589999987
No 13
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.57 E-value=2 Score=33.99 Aligned_cols=19 Identities=42% Similarity=0.768 Sum_probs=17.1
Q ss_pred CCccchhhHHHHhhhhhhc
Q 029323 31 ENFIPGLVIGFIFGMLLDL 49 (195)
Q Consensus 31 ~~~~~g~~~g~~~g~~~~~ 49 (195)
..||.|+++|.++|+++|-
T Consensus 50 sefIsGilVGa~iG~llD~ 68 (116)
T COG5336 50 SEFISGILVGAGIGWLLDK 68 (116)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999984
No 14
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=65.85 E-value=3.1 Score=32.94 Aligned_cols=13 Identities=54% Similarity=1.104 Sum_probs=7.2
Q ss_pred chhhHHHHhhhhh
Q 029323 35 PGLVIGFIFGMLL 47 (195)
Q Consensus 35 ~g~~~g~~~g~~~ 47 (195)
.|+||||+||+++
T Consensus 4 i~lvvG~iiG~~~ 16 (128)
T PF06295_consen 4 IGLVVGLIIGFLI 16 (128)
T ss_pred HHHHHHHHHHHHH
Confidence 4556666666444
No 15
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=63.81 E-value=11 Score=35.76 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=37.9
Q ss_pred EEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCccccCCCeeEEEEcCCCcc----chhhhcCC
Q 029323 133 VVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKS----LVDSVTGK 191 (195)
Q Consensus 133 VLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGrTev~pgs~TvlAIGP~p~~----~Id~iTg~ 191 (195)
.|-|+-..-=..+.++.+.+ |.+.|+.-..|++||.-+||||.||-.+. .|..+||.
T Consensus 94 ALAVDR~~Fs~~vT~~l~~h--pli~vireEvt~iP~dg~~vIATGPLTs~~La~~i~~ltG~ 154 (439)
T COG1206 94 ALAVDRDGFSQAVTEKLENH--PLIEVIREEVTEIPPDGITVIATGPLTSDALAEKIKELTGE 154 (439)
T ss_pred eeeecHhHHHHHHHHHHhcC--CCEEEEccccccCCCCCcEEEecCCCCCHHHHHHHHHhhCC
Confidence 34444333333466666555 55677777889999999999999997654 45566654
No 16
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=62.66 E-value=11 Score=28.47 Aligned_cols=74 Identities=16% Similarity=0.305 Sum_probs=42.6
Q ss_pred EEEEEeCCCCCChhhHHHHhhHH--HHHHHHHHhhhCHHHHHHHHhCCC--CeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029323 83 LALVVRQDLKMGSGKIASQCAHA--ATGMYAELMQSDRHLLRKWEQCGQ--PKIVVTCKNQQEMNKLWEVAENTGLPTFV 158 (195)
Q Consensus 83 mviVVR~DL~Ms~GKiAAQ~aHA--Av~a~~~~~~~~~~~l~~W~~~G~--~KIVLkv~~e~eL~eL~~~A~~~gl~~~~ 158 (195)
|-+.|+.++..+.+--+++..-. .-.+|..-.+..-.+..-|+-.|+ .-.+..+.|.+||.++.. ++|-+-
T Consensus 1 Mlflv~m~v~~P~~~~~~~~~~~~a~E~~~a~eLq~~G~~~~lWr~~G~~~n~~Ifdv~d~~eLh~lL~-----sLPL~p 75 (91)
T PF02426_consen 1 MLFLVRMTVNVPPDMPPEEVDRLKAREKARAQELQRQGKWRHLWRVVGRYANVSIFDVEDNDELHELLS-----SLPLFP 75 (91)
T ss_pred CeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeEEEEecCCcceEEEEECCCHHHHHHHHH-----hCCCcc
Confidence 45677778776655444433221 111121111222334556776554 345778999999999876 778887
Q ss_pred EEc
Q 029323 159 VAD 161 (195)
Q Consensus 159 V~D 161 (195)
+.|
T Consensus 76 ~m~ 78 (91)
T PF02426_consen 76 YMD 78 (91)
T ss_pred cee
Confidence 764
No 17
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=60.27 E-value=3.8 Score=32.40 Aligned_cols=17 Identities=41% Similarity=0.919 Sum_probs=14.9
Q ss_pred CccchhhHHHHhhhhhh
Q 029323 32 NFIPGLVIGFIFGMLLD 48 (195)
Q Consensus 32 ~~~~g~~~g~~~g~~~~ 48 (195)
.|+.|+||||+++.+..
T Consensus 5 ~lvvG~iiG~~~~r~~~ 21 (128)
T PF06295_consen 5 GLVVGLIIGFLIGRLTS 21 (128)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 48899999999998875
No 18
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=57.59 E-value=16 Score=32.30 Aligned_cols=37 Identities=11% Similarity=0.319 Sum_probs=32.5
Q ss_pred HHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEE
Q 029323 123 KWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVV 159 (195)
Q Consensus 123 ~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V 159 (195)
.|+-.|.++.++.+.+.+++.++.+.|++.++|++++
T Consensus 6 t~~igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vl 42 (284)
T TIGR00179 6 TYKIGGNARHIVCPESIEQLVNVLDNAKEEDQPLLIL 42 (284)
T ss_pred eeecCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4556889999999999999999999999999997753
No 19
>PRK11677 hypothetical protein; Provisional
Probab=56.69 E-value=4.5 Score=32.75 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=6.5
Q ss_pred ccchhhHHHHhhhh
Q 029323 33 FIPGLVIGFIFGML 46 (195)
Q Consensus 33 ~~~g~~~g~~~g~~ 46 (195)
|+.|+||||+++.+
T Consensus 10 livG~iiG~~~~R~ 23 (134)
T PRK11677 10 LVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHhh
Confidence 44444444444443
No 20
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=53.50 E-value=85 Score=26.91 Aligned_cols=44 Identities=30% Similarity=0.437 Sum_probs=31.7
Q ss_pred HHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHC-CCCeEEEEc
Q 029323 118 RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENT-GLPTFVVAD 161 (195)
Q Consensus 118 ~~~l~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~-gl~~~~V~D 161 (195)
.+..+.|+..|..-+.+...|.++|.+..++|.+. +-|++++++
T Consensus 181 ~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~~ 225 (255)
T cd02012 181 EDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAK 225 (255)
T ss_pred hhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 45567888889886544434999999988888765 668777654
No 21
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=51.90 E-value=24 Score=31.65 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=34.4
Q ss_pred HHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCC
Q 029323 122 RKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAG 163 (195)
Q Consensus 122 ~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAG 163 (195)
..|+-.|.+..++.+.|++++.++.+.|++.++|+++ +-.|
T Consensus 28 tt~~igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~v-lGgG 68 (302)
T PRK14652 28 TAVRVGGPADLLVRPADPDALSALLRAVRELGVPLSI-LGGG 68 (302)
T ss_pred cEeecCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEE-EcCC
Confidence 4567789999999999999999999999999998665 3444
No 22
>TIGR00942 2a6301s05 Monovalent Cation (K+ or Na+):Proton Antiporter-3 (CPA3) subfamily.
Probab=51.25 E-value=5.5 Score=32.03 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=21.2
Q ss_pred eeeeccCCCccchhhHHHHhhhhh
Q 029323 24 LAVSFRPENFIPGLVIGFIFGMLL 47 (195)
Q Consensus 24 ~~~~~~~~~~~~g~~~g~~~g~~~ 47 (195)
|.++|.|.+|+-|+++|+++.++.
T Consensus 4 L~g~~s~~~l~~G~vv~l~v~~~~ 27 (144)
T TIGR00942 4 VTQSVTPGSIVLGLIFSTVLAWVT 27 (144)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999766
No 23
>COG1863 MnhE Multisubunit Na+/H+ antiporter, MnhE subunit [Inorganic ion transport and metabolism]
Probab=50.27 E-value=4.4 Score=33.58 Aligned_cols=23 Identities=43% Similarity=0.739 Sum_probs=20.4
Q ss_pred eeeccCCCccchhhHHHHhhhhh
Q 029323 25 AVSFRPENFIPGLVIGFIFGMLL 47 (195)
Q Consensus 25 ~~~~~~~~~~~g~~~g~~~g~~~ 47 (195)
++||++.+|+-|+++|+++.++.
T Consensus 19 ~~s~s~~~~i~G~ivg~iv~~~~ 41 (158)
T COG1863 19 TGSFSPANLILGFIVGAIVLLLL 41 (158)
T ss_pred hCcccHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999776
No 24
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=50.17 E-value=7.5 Score=27.87 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=9.3
Q ss_pred ccchhhHHHHhhhhh
Q 029323 33 FIPGLVIGFIFGMLL 47 (195)
Q Consensus 33 ~~~g~~~g~~~g~~~ 47 (195)
|+.|+++||+++.+|
T Consensus 7 li~G~~~Gff~ar~~ 21 (64)
T PF03672_consen 7 LIVGAVIGFFIARKY 21 (64)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666666444
No 25
>PRK11677 hypothetical protein; Provisional
Probab=48.98 E-value=8.5 Score=31.13 Aligned_cols=15 Identities=40% Similarity=0.742 Sum_probs=13.2
Q ss_pred cchhhHHHHhhhhhh
Q 029323 34 IPGLVIGFIFGMLLD 48 (195)
Q Consensus 34 ~~g~~~g~~~g~~~~ 48 (195)
+.|+|||++||+++.
T Consensus 7 ~i~livG~iiG~~~~ 21 (134)
T PRK11677 7 LIGLVVGIIIGAVAM 21 (134)
T ss_pred HHHHHHHHHHHHHHH
Confidence 579999999998885
No 26
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=47.37 E-value=1.6e+02 Score=25.14 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=40.5
Q ss_pred HHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCccccCCCeeEEEE
Q 029323 120 LLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAI 177 (195)
Q Consensus 120 ~l~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGrTev~pgs~TvlAI 177 (195)
.+..-...|...-++.+++ +.|.++...|+..||.++++.|- +-.||...|+.-
T Consensus 23 slk~L~k~g~~l~~i~i~~-~~lk~F~k~AkKyGV~yav~kdk---~~~~~~~~V~Fk 76 (204)
T PF12687_consen 23 SLKKLLKQGKGLKNIEITD-EDLKEFKKEAKKYGVDYAVKKDK---STGPGKYDVFFK 76 (204)
T ss_pred eHHHHHhcCCCceEEecCH-hhHHHHHHHHHHcCCceEEeecc---CCCCCcEEEEEE
Confidence 3555556687788888985 68999999999999999999985 345554444443
No 27
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=46.91 E-value=33 Score=31.37 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=33.8
Q ss_pred HHHHHHhCCCCeEEE-ecCCHHHHHHHHHHHHHC-CCCeEEEEc
Q 029323 120 LLRKWEQCGQPKIVV-TCKNQQEMNKLWEVAENT-GLPTFVVAD 161 (195)
Q Consensus 120 ~l~~W~~~G~~KIVL-kv~~e~eL~eL~~~A~~~-gl~~~~V~D 161 (195)
..++|+..|...+.+ ...|.+++.+..+.|+.. +-|+++|++
T Consensus 198 ~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP~~Ii~~ 241 (332)
T PF00456_consen 198 IAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKASKGKPTVIIAR 241 (332)
T ss_dssp HHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHHSTSS-EEEEEE
T ss_pred HHHHHHHhhhhhcccccCcHHHHHHHHHHHHHhcCCCCceeecc
Confidence 467899999988876 778999999988888876 889999985
No 28
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=45.35 E-value=34 Score=30.68 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=30.8
Q ss_pred HHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029323 124 WEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFV 158 (195)
Q Consensus 124 W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~ 158 (195)
|.-.|.+.+++.+.+++++.++.+.|.+.++|.++
T Consensus 31 ~~igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v 65 (305)
T PRK12436 31 IKVGGKADVFVAPTNYDEIQEVIKYANKYNIPVTF 65 (305)
T ss_pred cccCceEEEEEecCCHHHHHHHHHHHHHcCCCEEE
Confidence 34578899999999999999999999999999665
No 29
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=44.41 E-value=34 Score=30.38 Aligned_cols=41 Identities=12% Similarity=0.333 Sum_probs=34.2
Q ss_pred HHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCC
Q 029323 122 RKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAG 163 (195)
Q Consensus 122 ~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAG 163 (195)
..|.-.|.+..++...+++++.++.+.|+..++|..+ +-.|
T Consensus 23 ~t~~igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v-~GgG 63 (298)
T PRK13905 23 TSFRVGGPADYLVEPADIEDLQEFLKLLKENNIPVTV-LGNG 63 (298)
T ss_pred ceeecCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEE-EeCC
Confidence 4566778999999999999999999999999998665 4444
No 30
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=44.24 E-value=35 Score=30.74 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=31.5
Q ss_pred HHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029323 123 KWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFV 158 (195)
Q Consensus 123 ~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~ 158 (195)
.|...|.+..++.+.+++++.++.+.|++.++|+++
T Consensus 30 t~~iGG~A~~~v~p~~~edv~~~v~~a~~~~ip~~v 65 (307)
T PRK13906 30 YTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTY 65 (307)
T ss_pred EcCcCceeEEEEEcCCHHHHHHHHHHHHHcCCCEEE
Confidence 445578899999999999999999999999999764
No 31
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=42.37 E-value=37 Score=30.31 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=32.5
Q ss_pred HHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029323 122 RKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFV 158 (195)
Q Consensus 122 ~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~ 158 (195)
..|.-.|.+...+.+.+.++|.++.+.++..++|+.+
T Consensus 13 tt~~iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~v 49 (295)
T PRK14649 13 TSWRIGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFW 49 (295)
T ss_pred cEeeeCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEE
Confidence 3556788999999999999999999999999999775
No 32
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.71 E-value=16 Score=29.77 Aligned_cols=13 Identities=54% Similarity=1.020 Sum_probs=9.4
Q ss_pred chhhHHHHhhhhh
Q 029323 35 PGLVIGFIFGMLL 47 (195)
Q Consensus 35 ~g~~~g~~~g~~~ 47 (195)
-|||||++||++.
T Consensus 13 igLvvGi~IG~li 25 (138)
T COG3105 13 IGLVVGIIIGALI 25 (138)
T ss_pred HHHHHHHHHHHHH
Confidence 4788888888544
No 33
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=40.10 E-value=46 Score=30.89 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=32.6
Q ss_pred HHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029323 122 RKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFV 158 (195)
Q Consensus 122 ~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~ 158 (195)
..|.-.|.+..++.+.|++++.++.+.++..++|+.+
T Consensus 25 tt~~iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~v 61 (363)
T PRK13903 25 TTLRVGGPARRLVTCTSTEELVAAVRELDAAGEPLLV 61 (363)
T ss_pred cEeecCccceEEEEeCCHHHHHHHHHHHHHCCCCEEE
Confidence 4566789999999999999999999999999999775
No 34
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=39.80 E-value=45 Score=25.24 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=28.9
Q ss_pred eEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCccc
Q 029323 131 KIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQV 167 (195)
Q Consensus 131 KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGrTev 167 (195)
..|+...+++|+.++.+.|.+.+++ +.++-.|..-.
T Consensus 2 ~~vv~P~s~~ev~~~v~~a~~~~~~-v~~~g~G~~~~ 37 (139)
T PF01565_consen 2 AAVVRPKSVEEVQAIVKFANENGVP-VRVRGGGHSWT 37 (139)
T ss_dssp SEEEEESSHHHHHHHHHHHHHTTSE-EEEESSSTTSS
T ss_pred cEEEEeCCHHHHHHHHHHHHHcCCc-EEEEcCCCCcc
Confidence 5688999999999999999999986 44667766433
No 35
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=39.60 E-value=41 Score=30.91 Aligned_cols=37 Identities=16% Similarity=0.331 Sum_probs=33.1
Q ss_pred HHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029323 122 RKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFV 158 (195)
Q Consensus 122 ~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~ 158 (195)
..|+-.|.+...+...|.++|.++.+.+++.++|+++
T Consensus 13 tt~riGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~v 49 (334)
T PRK00046 13 NTFGIDARARHLVEAESEEQLLEALADARAAGLPVLV 49 (334)
T ss_pred ceeccCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEE
Confidence 4567789999999999999999999999999999775
No 36
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=39.12 E-value=29 Score=31.18 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=42.0
Q ss_pred HhCCCCeEEEecCCHH--HHHH-HHHHHHHCCCCeEEEEcCCCccccCC--CeeEEEE---cCCCccchhhhc
Q 029323 125 EQCGQPKIVVTCKNQQ--EMNK-LWEVAENTGLPTFVVADAGRTQVSAG--SKTVLAI---GPGPKSLVDSVT 189 (195)
Q Consensus 125 ~~~G~~KIVLkv~~e~--eL~e-L~~~A~~~gl~~~~V~DAGrTev~pg--s~TvlAI---GP~p~~~Id~iT 189 (195)
-..+..+.|+-..|.+ ++.. |...+++.+||++.|-+.-+=-..-| +.||+|| |+..+..++.++
T Consensus 144 IekkKAkLVIIA~DVsPie~vk~LpaLCrk~~VPY~iVktKaeLG~AIGkKtravVAItD~g~ed~~~l~~lv 216 (263)
T PTZ00222 144 IEKKQARMVVIANNVDPVELVLWMPNLCRANKIPYAIVKDMARLGDAIGRKTATCVAITDVNAEDEAALKNLI 216 (263)
T ss_pred HHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHHCCCCCeEEEEeeCCcccHHHHHHHH
Confidence 3568888888888754 4433 77889999999998865411000112 5677776 666666666554
No 37
>PRK08382 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=38.82 E-value=8.8 Score=32.95 Aligned_cols=24 Identities=17% Similarity=0.409 Sum_probs=21.0
Q ss_pred eeeeccCCCccchhhHHHHhhhhh
Q 029323 24 LAVSFRPENFIPGLVIGFIFGMLL 47 (195)
Q Consensus 24 ~~~~~~~~~~~~g~~~g~~~g~~~ 47 (195)
|+++|.+.+|+-|+++|++++++.
T Consensus 49 Lsg~~s~~~l~lG~i~~~~v~~l~ 72 (201)
T PRK08382 49 ISGDLSPRGLILGALTTLIIASYM 72 (201)
T ss_pred HhCCcCHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999766
No 38
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=38.63 E-value=15 Score=30.91 Aligned_cols=15 Identities=33% Similarity=0.642 Sum_probs=12.1
Q ss_pred cchhhHHHHhhhhhh
Q 029323 34 IPGLVIGFIFGMLLD 48 (195)
Q Consensus 34 ~~g~~~g~~~g~~~~ 48 (195)
+-|++|||++||++.
T Consensus 7 i~~~~vG~~~G~~~~ 21 (201)
T PF12072_consen 7 IVALIVGIGIGYLVR 21 (201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457889999998884
No 39
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=37.62 E-value=70 Score=29.83 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=32.9
Q ss_pred HHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029323 122 RKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFV 158 (195)
Q Consensus 122 ~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~ 158 (195)
..|.-.|.+...+.+.+.++|.++.+.++..++|+++
T Consensus 22 tT~rIGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~i 58 (354)
T PRK14648 22 CSFRIGGAAQFWAEPRSCTQLRALIEEAQRARIPLSL 58 (354)
T ss_pred ceeeeCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEE
Confidence 4566789999999999999999999999999999775
No 40
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=36.82 E-value=81 Score=23.24 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHCCCCeEEEEcCCCccccCCCeeEEEE
Q 029323 140 QEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAI 177 (195)
Q Consensus 140 ~eL~eL~~~A~~~gl~~~~V~DAGrTev~pgs~TvlAI 177 (195)
.++.+..+.|++.|.++..|.+...+.+..-+--++-+
T Consensus 60 ~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~ 97 (126)
T cd05008 60 ADTLAALRLAKEKGAKTVAITNVVGSTLAREADYVLYL 97 (126)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEe
Confidence 57888999999999999999998777776655556666
No 41
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=35.79 E-value=49 Score=30.03 Aligned_cols=37 Identities=16% Similarity=0.355 Sum_probs=32.6
Q ss_pred HHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029323 122 RKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFV 158 (195)
Q Consensus 122 ~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~ 158 (195)
..|.-.|.+...+...|.++|.++.+.++..++|+++
T Consensus 25 tt~~iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~v 61 (302)
T PRK14650 25 TTYKIGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFI 61 (302)
T ss_pred ceeeeCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEE
Confidence 4566789999999999999999999999999999775
No 42
>PRK10132 hypothetical protein; Provisional
Probab=35.16 E-value=13 Score=28.87 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=17.5
Q ss_pred cccceeeeeccCCCccchhhHHHHhhhhhh
Q 029323 19 QEKVSLAVSFRPENFIPGLVIGFIFGMLLD 48 (195)
Q Consensus 19 ~~~~~~~~~~~~~~~~~g~~~g~~~g~~~~ 48 (195)
.+.||-++.+ +..|||++|+++.
T Consensus 83 ~~~Pw~svgi-------aagvG~llG~Ll~ 105 (108)
T PRK10132 83 RERPWCSVGT-------AAAVGIFIGALLS 105 (108)
T ss_pred HhCcHHHHHH-------HHHHHHHHHHHHh
Confidence 4578988875 6778999998763
No 43
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=35.14 E-value=35 Score=33.55 Aligned_cols=44 Identities=23% Similarity=0.389 Sum_probs=34.2
Q ss_pred ecCCHHHHHHHHHHHHHCCCCeEEEEc-----CCCccccCCCeeEEEEc
Q 029323 135 TCKNQQEMNKLWEVAENTGLPTFVVAD-----AGRTQVSAGSKTVLAIG 178 (195)
Q Consensus 135 kv~~e~eL~eL~~~A~~~gl~~~~V~D-----AGrTev~pgs~TvlAIG 178 (195)
.+++.+.+-.=+..+...|+|+++++| .|-.|+..||+|+---+
T Consensus 469 ~~DdsesIGKKyRraDeiGiPy~ITVD~~Tl~dGdkE~e~gTVTVR~RD 517 (539)
T PRK14894 469 VYDDTGAIGKLYRRQDEIGTPFCITVDFDTIGQGKDPALAGTVTVRDRD 517 (539)
T ss_pred EEcCCCCHhHHHHhhhccCCCEEEEEeccccccccchhhcCeEEEEEeC
Confidence 344445787778888999999999997 46668888999987653
No 44
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=34.97 E-value=74 Score=21.46 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=19.1
Q ss_pred EEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCc
Q 029323 132 IVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRT 165 (195)
Q Consensus 132 IVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGrT 165 (195)
-+.++.|.-+..-+...+++.||++++ .|.+..
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v-~~~~~~ 34 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFV-KNEHMS 34 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE---S----
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEE-ECCccc
Confidence 466788888888899999999998765 565443
No 45
>PRK01844 hypothetical protein; Provisional
Probab=34.86 E-value=18 Score=26.54 Aligned_cols=16 Identities=19% Similarity=0.598 Sum_probs=9.3
Q ss_pred CccchhhHHHHhhhhh
Q 029323 32 NFIPGLVIGFIFGMLL 47 (195)
Q Consensus 32 ~~~~g~~~g~~~g~~~ 47 (195)
.++.|+++||+++.++
T Consensus 13 ~li~G~~~Gff~ark~ 28 (72)
T PRK01844 13 ALVAGVALGFFIARKY 28 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666666443
No 46
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=34.21 E-value=17 Score=29.52 Aligned_cols=15 Identities=47% Similarity=1.045 Sum_probs=10.8
Q ss_pred ccchhhHHHHhhhhh
Q 029323 33 FIPGLVIGFIFGMLL 47 (195)
Q Consensus 33 ~~~g~~~g~~~g~~~ 47 (195)
|+-|+++||++|++-
T Consensus 92 lL~G~liGff~g~~~ 106 (140)
T PF13373_consen 92 LLWGLLIGFFFGLFS 106 (140)
T ss_pred HHHHHHHHHHHHHHh
Confidence 566888888888543
No 47
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.84 E-value=79 Score=22.58 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=25.2
Q ss_pred CCCCeEEEecCC-HHHHHHHHHHHHHCCCCeEE
Q 029323 127 CGQPKIVVTCKN-QQEMNKLWEVAENTGLPTFV 158 (195)
Q Consensus 127 ~G~~KIVLkv~~-e~eL~eL~~~A~~~gl~~~~ 158 (195)
.+.-.+++++++ .+++.++.+..++.|..+..
T Consensus 39 ~~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 39 DAHIFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred eeEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 344556679999 99999999999999975543
No 48
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=33.70 E-value=22 Score=25.16 Aligned_cols=16 Identities=31% Similarity=0.648 Sum_probs=9.1
Q ss_pred ccchhhHHHHhhhhhh
Q 029323 33 FIPGLVIGFIFGMLLD 48 (195)
Q Consensus 33 ~~~g~~~g~~~g~~~~ 48 (195)
|+.|.++|.++|+++.
T Consensus 5 ~l~Ga~~Ga~~glL~a 20 (74)
T PF12732_consen 5 FLAGAAAGAAAGLLFA 20 (74)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 4455555556666664
No 49
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=33.26 E-value=79 Score=28.44 Aligned_cols=36 Identities=6% Similarity=0.159 Sum_probs=31.3
Q ss_pred HHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEE
Q 029323 123 KWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVV 159 (195)
Q Consensus 123 ~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V 159 (195)
.|+-.|.+..++...|.++|.++.+.++. ++|++++
T Consensus 27 t~~iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vl 62 (297)
T PRK14653 27 SFKIGGPVPLFAIPNSTNGFIETINLLKE-GIEVKIL 62 (297)
T ss_pred EeeeCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEE
Confidence 45678999999999999999999998988 9997763
No 50
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=33.03 E-value=2.3e+02 Score=25.01 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=18.2
Q ss_pred CCCC-CChhhHHHHhhHHHHHHHHH
Q 029323 89 QDLK-MGSGKIASQCAHAATGMYAE 112 (195)
Q Consensus 89 ~DL~-Ms~GKiAAQ~aHAAv~a~~~ 112 (195)
-|++ ++.+.-..|+.+.+...|++
T Consensus 78 aD~~fg~y~~~~~~av~~a~r~~~~ 102 (254)
T cd06557 78 ADMPFGSYQTSPEQALRNAARLMKE 102 (254)
T ss_pred EeCCCCcccCCHHHHHHHHHHHHHH
Confidence 6777 56777788888888887764
No 51
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=32.36 E-value=1.5e+02 Score=31.07 Aligned_cols=58 Identities=17% Similarity=0.320 Sum_probs=39.8
Q ss_pred HHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCccccCCCeeEEEEcCCC
Q 029323 120 LLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGP 181 (195)
Q Consensus 120 ~l~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGrTev~pgs~TvlAIGP~p 181 (195)
.+..|...|. +|++-+.++.+.+.+.+...+.+++...+-+.+ .++++. ..+.+||-.
T Consensus 228 ~~~~~~~~~~-~vii~~~s~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~-~~~~~~~l~ 285 (926)
T TIGR00580 228 ELFRWLKAGF-KITVAAESESQAERLKSLLAEHDIAAQVIDESC--IIIPAV-RYVMIGALS 285 (926)
T ss_pred HHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHCCCCceecCchh--ccCCCe-EEEEEecCC
Confidence 4678887774 678889999999999999999998766542211 334443 344555543
No 52
>PRK00523 hypothetical protein; Provisional
Probab=32.27 E-value=21 Score=26.19 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=8.6
Q ss_pred ccchhhHHHHhhhhh
Q 029323 33 FIPGLVIGFIFGMLL 47 (195)
Q Consensus 33 ~~~g~~~g~~~g~~~ 47 (195)
++.|+++||+++.++
T Consensus 15 li~G~~~Gffiark~ 29 (72)
T PRK00523 15 LIVGGIIGYFVSKKM 29 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666666443
No 53
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=31.92 E-value=1.9e+02 Score=20.48 Aligned_cols=29 Identities=7% Similarity=0.092 Sum_probs=25.0
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHCCCCe
Q 029323 128 GQPKIVVTCKNQQEMNKLWEVAENTGLPT 156 (195)
Q Consensus 128 G~~KIVLkv~~e~eL~eL~~~A~~~gl~~ 156 (195)
+..-+.+.|.+.+++.++.++++..|+..
T Consensus 58 ~~~~~~~~v~~~~~l~~~~~~l~~~G~~~ 86 (120)
T cd08362 58 RLDVVSFSVASRADVDALARQVAARGGTV 86 (120)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCce
Confidence 45678999999999999999999999753
No 54
>COG3856 Sbp Uncharacterized conserved protein (small basic protein) [Function unknown]
Probab=31.73 E-value=25 Score=27.57 Aligned_cols=19 Identities=37% Similarity=0.926 Sum_probs=15.4
Q ss_pred cchhhHHHHhhhhhhcCCC
Q 029323 34 IPGLVIGFIFGMLLDLSKP 52 (195)
Q Consensus 34 ~~g~~~g~~~g~~~~~~~~ 52 (195)
+.||+||+++|+..+..-+
T Consensus 5 i~gL~iGI~lGlv~n~~vP 23 (113)
T COG3856 5 IAGLLIGIVLGLVFNPGVP 23 (113)
T ss_pred HHHHHHHHHHhhhcCCCCc
Confidence 4699999999999987433
No 55
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=31.34 E-value=87 Score=22.16 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=25.2
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHCCCCe
Q 029323 128 GQPKIVVTCKNQQEMNKLWEVAENTGLPT 156 (195)
Q Consensus 128 G~~KIVLkv~~e~eL~eL~~~A~~~gl~~ 156 (195)
|..-+.+.++|.+++.++.+++++.|+..
T Consensus 70 g~~hi~f~v~~~~~v~~~~~~l~~~g~~~ 98 (125)
T cd07241 70 GWAHLAFSVGSKEAVDELTERLRADGYLI 98 (125)
T ss_pred ceEEEEEECCCHHHHHHHHHHHHHCCCEE
Confidence 55679999999999999999999999753
No 56
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=31.20 E-value=1.3e+02 Score=22.14 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHCCCCeEEEEcCCCccccCCCeeEEEE
Q 029323 140 QEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAI 177 (195)
Q Consensus 140 ~eL~eL~~~A~~~gl~~~~V~DAGrTev~pgs~TvlAI 177 (195)
.++.++.+.|+++|+++..|.+...+++....-.+|-+
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~ 98 (128)
T cd05014 61 DELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDL 98 (128)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEEC
Confidence 57888889999999999999998888887766666665
No 57
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=31.18 E-value=5.3e+02 Score=25.50 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=30.8
Q ss_pred HHhCCCCeE-EEecCCHHHHHHHHHHHHHCCCCeEEEEc
Q 029323 124 WEQCGQPKI-VVTCKNQQEMNKLWEVAENTGLPTFVVAD 161 (195)
Q Consensus 124 W~~~G~~KI-VLkv~~e~eL~eL~~~A~~~gl~~~~V~D 161 (195)
|+.-|+.-+ .+-..|.++|.+..+.++..+=|++++..
T Consensus 234 f~~~G~~~~~~vDGhd~~~l~~al~~ak~~~~P~~i~~~ 272 (617)
T TIGR00204 234 FEELGFNYIGPVDGHDLLELIETLKNAKKLKGPVFLHIQ 272 (617)
T ss_pred HHHcCCcEEcccCCCCHHHHHHHHHHHhcCCCCEEEEEE
Confidence 888999877 57888999999988888765448888764
No 58
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=30.71 E-value=1.1e+02 Score=20.50 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=32.6
Q ss_pred HHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCcc
Q 029323 122 RKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQ 166 (195)
Q Consensus 122 ~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGrTe 166 (195)
..+......+||+-|.+...-..+...++..|...+.+.+.|..+
T Consensus 49 ~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~ 93 (100)
T smart00450 49 KRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKE 93 (100)
T ss_pred HHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHHH
Confidence 344445567888889876666667777888898877788888754
No 59
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=30.59 E-value=1.1e+02 Score=22.27 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=27.5
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCc
Q 029323 128 GQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRT 165 (195)
Q Consensus 128 G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGrT 165 (195)
..++||+-|.+-..-..+...++..|.+.+.+.|.|.+
T Consensus 77 ~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 114 (118)
T cd01449 77 PDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWS 114 (118)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHH
Confidence 46788888988555555666778889876777787653
No 60
>PRK12651 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=29.86 E-value=15 Score=29.91 Aligned_cols=25 Identities=36% Similarity=0.620 Sum_probs=21.1
Q ss_pred eeeeccCCCccchhhHHHHhhhhhh
Q 029323 24 LAVSFRPENFIPGLVIGFIFGMLLD 48 (195)
Q Consensus 24 ~~~~~~~~~~~~g~~~g~~~g~~~~ 48 (195)
|++++.|.+++-|+++|+++.++..
T Consensus 18 L~g~~~~~~l~~G~~v~~~v~~~~~ 42 (158)
T PRK12651 18 LTGSFSLGNFIIGFILGLFVLFLFR 42 (158)
T ss_pred HhCCcCHHHHHHHHHHHHHHHHHHh
Confidence 3577999999999999999997664
No 61
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=29.42 E-value=88 Score=22.09 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=25.0
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHCCCCe
Q 029323 128 GQPKIVVTCKNQQEMNKLWEVAENTGLPT 156 (195)
Q Consensus 128 G~~KIVLkv~~e~eL~eL~~~A~~~gl~~ 156 (195)
+..-+.+.++|.+++.++.+++++.|++.
T Consensus 73 ~~~hi~f~v~~~~~~~~~~~~~~~~g~~~ 101 (126)
T cd08346 73 QIHHIAFSVPSEASLDAWRERLRAAGVPV 101 (126)
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHHcCCcc
Confidence 45578999999989999999999999864
No 62
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.07 E-value=8.6 Score=28.12 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=13.3
Q ss_pred eeeeeccCCCccchhhHHHHhhhhh
Q 029323 23 SLAVSFRPENFIPGLVIGFIFGMLL 47 (195)
Q Consensus 23 ~~~~~~~~~~~~~g~~~g~~~g~~~ 47 (195)
||+.-+-+-.++.|+++||++...+
T Consensus 4 ~lail~ivl~ll~G~~~G~fiark~ 28 (71)
T COG3763 4 WLAILLIVLALLAGLIGGFFIARKQ 28 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445566666666665443
No 63
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.96 E-value=93 Score=21.07 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=23.2
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHCCCC
Q 029323 128 GQPKIVVTCKNQQEMNKLWEVAENTGLP 155 (195)
Q Consensus 128 G~~KIVLkv~~e~eL~eL~~~A~~~gl~ 155 (195)
..-.+.+++++.+++.++.+..++.|..
T Consensus 38 ~~v~v~ie~~~~~~~~~i~~~L~~~G~~ 65 (68)
T cd04885 38 ARVLVGIQVPDREDLAELKERLEALGYP 65 (68)
T ss_pred eEEEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 4455678999999999999999999953
No 64
>TIGR03266 methan_mark_1 putative methanogenesis marker protein 1. Members of this protein family represent a distinct clade among the larger set of proteins that belong to families TIGR00702 and pfam02624. Proteins from this clade are found in genome sequence if and only if the species sequenced is one of the methanogens. All methanogens belong to the archaea; some but not all of those sequenced are hyperthermophiles. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006).
Probab=28.52 E-value=3.8e+02 Score=24.66 Aligned_cols=81 Identities=23% Similarity=0.262 Sum_probs=43.9
Q ss_pred eCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHH-hCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCcc
Q 029323 88 RQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWE-QCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQ 166 (195)
Q Consensus 88 R~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~-~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGrTe 166 (195)
...=|+..|.-..+ |.+.+..+..++|--.+ .|. ....++|-+...| ..+.++.+..++.|+.. .+.|.-.
T Consensus 151 ~~SnGlAaGnt~eE---AilhgL~EvIERDA~~l-~w~~~~~~~~id~~~~d-~~~~~l~~~~~~~g~~v-~l~d~t~-- 222 (376)
T TIGR03266 151 SNTNGLASGNVLEE---AIFHGLLEVIERDAWSL-AEASRNLGPEINVTAEN-GYLYELLEKFKDAGVDV-KLRDLTS-- 222 (376)
T ss_pred ecCCccCCCCCHHH---HHHHHHHHHHHhhHHHH-HHHhccCCCcccCCCCC-HHHHHHHHHHHhcCCEE-EEEeCcC--
Confidence 33445555554433 33444444554444333 454 4455666664444 56888888888889744 4456421
Q ss_pred ccCCCeeEEEE
Q 029323 167 VSAGSKTVLAI 177 (195)
Q Consensus 167 v~pgs~TvlAI 177 (195)
.-|..|+.|+
T Consensus 223 -d~giP~v~a~ 232 (376)
T TIGR03266 223 -DTGIPTVAAV 232 (376)
T ss_pred -CCCCcEEEEE
Confidence 2344555555
No 65
>cd02193 PurL Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=27.89 E-value=1.2e+02 Score=26.23 Aligned_cols=38 Identities=13% Similarity=0.006 Sum_probs=29.2
Q ss_pred HHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEE
Q 029323 121 LRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVV 159 (195)
Q Consensus 121 l~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V 159 (195)
+..|...++...++.|+. ++..++.+.+++.||++.+|
T Consensus 232 ~~~~~ses~~~~l~~v~~-~~~~~~~~~~~~~gi~~~~I 269 (272)
T cd02193 232 LEIALFESQERGVIQVRA-EDRDAVEEAQYGLADCVHVL 269 (272)
T ss_pred HHHHHhhhccCeEEEECH-HHHHHHHHHHhccCCCeEEe
Confidence 456667677778888875 45677888888899998776
No 66
>PRK12856 hypothetical protein; Provisional
Probab=27.80 E-value=1.1e+02 Score=23.67 Aligned_cols=42 Identities=24% Similarity=0.293 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHCCCCeEEEEcCCCccccCCCeeEEEEcCC
Q 029323 139 QQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPG 180 (195)
Q Consensus 139 e~eL~eL~~~A~~~gl~~~~V~DAGrTev~pgs~TvlAIGP~ 180 (195)
++.+.++.++|++.|=+..+=.+=..+++..|..-|+|.|.+
T Consensus 59 ~~A~~rm~~~A~~lGAnAVvgvr~d~~~~~~~~~~V~ayGTA 100 (103)
T PRK12856 59 DIAMDEMKELAKQKGANAIVGVDVDYEVVRDGMLMVAVSGTA 100 (103)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhHhcCcEEEEEEEeeE
Confidence 467889999999999776665555556666777778888765
No 67
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=26.90 E-value=2e+02 Score=29.18 Aligned_cols=52 Identities=25% Similarity=0.451 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCCCeE-EEecCCHHHHHHHHHHHHH-CCCCeEEEEcCCCccccCCCeeEEEEcCC
Q 029323 118 RHLLRKWEQCGQPKI-VVTCKNQQEMNKLWEVAEN-TGLPTFVVADAGRTQVSAGSKTVLAIGPG 180 (195)
Q Consensus 118 ~~~l~~W~~~G~~KI-VLkv~~e~eL~eL~~~A~~-~gl~~~~V~DAGrTev~pgs~TvlAIGP~ 180 (195)
.+...+++..|...+ +....|.+++.+..++|+. ..=|+.+++ .|+|+.|-.
T Consensus 201 ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~~dkPtlI~~-----------kTiIG~Gsp 254 (663)
T COG0021 201 EDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKASTDKPTLIIV-----------KTIIGKGSP 254 (663)
T ss_pred hhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCCeEEEE-----------EeeeecCCC
Confidence 456678899999988 7777889999999999987 556888776 588887743
No 68
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=26.58 E-value=2.7e+02 Score=21.91 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=40.6
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCC-----ccccCCCeeEEEE-cCC--CccchhhhcCCCCC
Q 029323 128 GQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGR-----TQVSAGSKTVLAI-GPG--PKSLVDSVTGKQRL 194 (195)
Q Consensus 128 G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGr-----Tev~pgs~TvlAI-GP~--p~~~Id~iTg~LKL 194 (195)
+..-+.+.++|.+++.++.+.+++.|+...-..|.+. .+=|.|..--+.. .|. -.+..+++-.+|||
T Consensus 65 ~l~Hiaf~v~d~~dvd~~~~~L~~~Gv~~~~~~~~~~~~s~yf~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~ 139 (157)
T cd08347 65 TVHHVAFRVPDDEELEAWKERLEALGLPVSGIVDRFYFKSLYFREPGGILFEIATDGPGFTVDEPLEELGERLKL 139 (157)
T ss_pred ceEEEEEECCCHHHHHHHHHHHHHCCCCcccccccccEEEEEEECCCCcEEEEEECCCCccccCChhHcCCccCC
Confidence 4557889999999999999999999986432223221 1223444333333 232 24456666666665
No 69
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=26.40 E-value=1.4e+02 Score=23.70 Aligned_cols=38 Identities=11% Similarity=0.172 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHCCCCeEEEEcCCCccccCCCeeEEEE
Q 029323 140 QEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAI 177 (195)
Q Consensus 140 ~eL~eL~~~A~~~gl~~~~V~DAGrTev~pgs~TvlAI 177 (195)
.++.++.+.|++.|+++..|.|.....+..-+-.++.+
T Consensus 86 ~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~ 123 (179)
T TIGR03127 86 ESLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEI 123 (179)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEe
Confidence 67888999999999999999998777777666566665
No 70
>PRK12855 hypothetical protein; Provisional
Probab=25.64 E-value=1.3e+02 Score=23.23 Aligned_cols=42 Identities=19% Similarity=0.193 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHCCCCeEEEEcCCCccccCCCeeEEEEcCC
Q 029323 139 QQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPG 180 (195)
Q Consensus 139 e~eL~eL~~~A~~~gl~~~~V~DAGrTev~pgs~TvlAIGP~ 180 (195)
++.+.++.++|++.|=+..+=.+=..+++..|..-|+|.|.+
T Consensus 59 ~~A~~rm~~~A~~lGAnAVVgvr~d~~~i~~~~~~V~ayGTA 100 (103)
T PRK12855 59 DIAMEEMKTLARQKNANAIVGIDVDYEVVREGMLMVAVSGTA 100 (103)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhHhcCcEEEEEEEeeE
Confidence 477889999999999776665554556666677777787765
No 71
>PRK08965 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=25.64 E-value=19 Score=29.37 Aligned_cols=25 Identities=36% Similarity=0.655 Sum_probs=21.1
Q ss_pred eeeeccCCCccchhhHHHHhhhhhh
Q 029323 24 LAVSFRPENFIPGLVIGFIFGMLLD 48 (195)
Q Consensus 24 ~~~~~~~~~~~~g~~~g~~~g~~~~ 48 (195)
|++++.+.+++-|+++|+++.+++.
T Consensus 22 L~g~~~~~~l~~G~~~~~~v~~~~~ 46 (162)
T PRK08965 22 LNGSFSLGNLLLGLLLGLLIPLLLA 46 (162)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4567999999999999999997774
No 72
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=25.40 E-value=21 Score=33.04 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.0
Q ss_pred eeeeccCCCccchhhHHHHhhhhh
Q 029323 24 LAVSFRPENFIPGLVIGFIFGMLL 47 (195)
Q Consensus 24 ~~~~~~~~~~~~g~~~g~~~g~~~ 47 (195)
|+++|.+.+|+-|+++|+++.+++
T Consensus 183 lsg~~s~~~l~~G~v~~~~v~~~~ 206 (357)
T PRK12652 183 LGDPLYWFDLLTGAVTALIVAVLL 206 (357)
T ss_pred HcCcCCHHHHHHHHHHHHHHHHHh
Confidence 367899999999999999998776
No 73
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=25.37 E-value=1.5e+02 Score=20.68 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=25.4
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHCCCCeE
Q 029323 128 GQPKIVVTCKNQQEMNKLWEVAENTGLPTF 157 (195)
Q Consensus 128 G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~ 157 (195)
+...+.+.+.+.+++.++.+.+++.|+...
T Consensus 57 ~~~h~~~~v~~~~~v~~~~~~l~~~g~~~~ 86 (117)
T cd07240 57 GVDALGFEVASEEDLEALAAHLEAAGVAPE 86 (117)
T ss_pred CceeEEEEcCCHHHHHHHHHHHHHcCCceE
Confidence 556789999999999999999999997643
No 74
>PF08219 TOM13: Outer membrane protein TOM13; InterPro: IPR013262 The TOM13 family of proteins are mitochondrial outer membrane proteins that mediate the assembly of beta-barrel proteins [].; GO: 0005741 mitochondrial outer membrane
Probab=25.13 E-value=30 Score=25.68 Aligned_cols=9 Identities=56% Similarity=1.387 Sum_probs=8.3
Q ss_pred ccchhhHHH
Q 029323 33 FIPGLVIGF 41 (195)
Q Consensus 33 ~~~g~~~g~ 41 (195)
|+-|||+||
T Consensus 44 FiNG~MLGF 52 (77)
T PF08219_consen 44 FINGMMLGF 52 (77)
T ss_pred hhhhhhHhH
Confidence 889999998
No 75
>PF09472 MtrF: Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF); InterPro: IPR013347 Many archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This domain is mostly found in MtrF, where it covers the entire length of the protein. This polypeptide is one of eight subunits of the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase complex found in methanogenic archaea. This is a membrane-associated enzyme complex that uses methyl-transfer reactions to drive a sodium-ion pump []. MtrF itself is involved in the transfer of the methyl group from N5-methyltetrahydromethanopterin to coenzyme M. Subsequently, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the C-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016020 membrane
Probab=25.06 E-value=40 Score=24.13 Aligned_cols=17 Identities=41% Similarity=0.860 Sum_probs=12.1
Q ss_pred CCccchhhHHHHhhhhh
Q 029323 31 ENFIPGLVIGFIFGMLL 47 (195)
Q Consensus 31 ~~~~~g~~~g~~~g~~~ 47 (195)
.+.+.|+++||++.+.+
T Consensus 39 ~~~~~GfaiG~~~AlvL 55 (64)
T PF09472_consen 39 ATGIKGFAIGFLFALVL 55 (64)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 45677888888877554
No 76
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=24.96 E-value=1.3e+02 Score=29.84 Aligned_cols=76 Identities=28% Similarity=0.385 Sum_probs=52.6
Q ss_pred EEeCCCCCC------hhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhC--CCCeEEEecCCHHHHHHHHHHHHHCCCCeE
Q 029323 86 VVRQDLKMG------SGKIASQCAHAATGMYAELMQSDRHLLRKWEQC--GQPKIVVTCKNQQEMNKLWEVAENTGLPTF 157 (195)
Q Consensus 86 VVR~DL~Ms------~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~--G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~ 157 (195)
||.+||.-+ .--++--=||=|++-|.... ..+.+... ....+.|.+..-.+.+++.+..+..||...
T Consensus 117 vveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~-----Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~v 191 (542)
T COG1111 117 VVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVF-----VAKEYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKV 191 (542)
T ss_pred HHHhHHhcCccChHHceEEEechhhhccCcchHHH-----HHHHHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceE
Confidence 456666532 11223445899999887653 34555543 456889999888889999999999999998
Q ss_pred EEEcCCCccccCC
Q 029323 158 VVADAGRTQVSAG 170 (195)
Q Consensus 158 ~V~DAGrTev~pg 170 (195)
.|+ ||-.++
T Consensus 192 evr----TE~d~D 200 (542)
T COG1111 192 EVR----TEEDPD 200 (542)
T ss_pred EEe----cCCCcc
Confidence 886 665444
No 77
>PRK08383 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=24.90 E-value=21 Score=29.73 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=18.5
Q ss_pred ccCCCccchhhHHHHhhhhhh
Q 029323 28 FRPENFIPGLVIGFIFGMLLD 48 (195)
Q Consensus 28 ~~~~~~~~g~~~g~~~g~~~~ 48 (195)
+.+++++-|+++|++++++..
T Consensus 26 ~s~~~l~~Gll~~~~v~~l~~ 46 (168)
T PRK08383 26 WSPEELIAGLIFAAIVGYATR 46 (168)
T ss_pred CCHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999997774
No 78
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=24.72 E-value=98 Score=28.16 Aligned_cols=36 Identities=17% Similarity=0.398 Sum_probs=31.8
Q ss_pred HHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029323 123 KWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFV 158 (195)
Q Consensus 123 ~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~ 158 (195)
.|+-.|.+++.+.+.|.++|.++.+.++..++|..+
T Consensus 14 tfriGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~i 49 (291)
T COG0812 14 TFRIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLI 49 (291)
T ss_pred eEecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEE
Confidence 456689999999999999999999999999998765
No 79
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=24.51 E-value=46 Score=24.41 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=14.4
Q ss_pred ccceeeeeccCCCccchhhHHHHhhhhhh
Q 029323 20 EKVSLAVSFRPENFIPGLVIGFIFGMLLD 48 (195)
Q Consensus 20 ~~~~~~~~~~~~~~~~g~~~g~~~g~~~~ 48 (195)
+.||-++. -++.+||++|+++.
T Consensus 71 e~P~~svg-------iAagvG~llG~Ll~ 92 (94)
T PF05957_consen 71 ENPWQSVG-------IAAGVGFLLGLLLR 92 (94)
T ss_pred HChHHHHH-------HHHHHHHHHHHHHh
Confidence 45776643 35678888887763
No 80
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=24.14 E-value=1.1e+02 Score=23.39 Aligned_cols=72 Identities=25% Similarity=0.412 Sum_probs=40.2
Q ss_pred EEEeCCCCCChhhHHHHhhH--HHHHHHHHHhhhCHHHHHHHHhCCCCe--EEEecCCHHHHHHHHHHHHHCCCCeEEEE
Q 029323 85 LVVRQDLKMGSGKIASQCAH--AATGMYAELMQSDRHLLRKWEQCGQPK--IVVTCKNQQEMNKLWEVAENTGLPTFVVA 160 (195)
Q Consensus 85 iVVR~DL~Ms~GKiAAQ~aH--AAv~a~~~~~~~~~~~l~~W~~~G~~K--IVLkv~~e~eL~eL~~~A~~~gl~~~~V~ 160 (195)
+.|+.+.+.+.+--++++.- |.-.+|..-.+..-.+..-|+-.|+.. -+..++|.+||.+|.. ++|.+-+.
T Consensus 2 flV~m~V~~P~~~~~~~~~~i~a~Eka~a~eLq~~Gk~~~lWRv~G~~~n~sifdv~s~~eLh~iL~-----sLPL~p~m 76 (90)
T TIGR03221 2 FHVRMDVNLPVDMPAEKAAAIKAREKAYAQELQREGKWRHLWRVAGEYANYSIFDVESNDELHTLLS-----GLPLFPYM 76 (90)
T ss_pred eEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHhCCceEEEEEecCCceeEEEEEcCCHHHHHHHHH-----hCCCCcce
Confidence 34566665544433333221 222233222223334455677655443 4578899999999886 78888776
Q ss_pred c
Q 029323 161 D 161 (195)
Q Consensus 161 D 161 (195)
|
T Consensus 77 ~ 77 (90)
T TIGR03221 77 D 77 (90)
T ss_pred E
Confidence 4
No 81
>CHL00067 rps2 ribosomal protein S2
Probab=24.10 E-value=2e+02 Score=24.89 Aligned_cols=55 Identities=22% Similarity=0.416 Sum_probs=33.9
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCccccCCCeeEEEEcCCCccchhhh
Q 029323 128 GQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSV 188 (195)
Q Consensus 128 G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGrTev~pgs~TvlAIGP~p~~~Id~i 188 (195)
..+..++-++...+.. +..+|...|||+..++|.. .+|..++ ..| |+-.+.+..|
T Consensus 160 ~~P~~iiv~d~~~~~~-ai~Ea~~l~IPvIaivDTn---~~p~~id-ypI-P~Ndds~~si 214 (230)
T CHL00067 160 KLPDIVIIIDQQEEYT-ALRECRKLGIPTISILDTN---CDPDLAD-IPI-PANDDAIASI 214 (230)
T ss_pred cCCCEEEEeCCcccHH-HHHHHHHcCCCEEEEEeCC---CCccccc-eee-ecCCchHHHH
Confidence 4566666555545544 4556888999999999954 4454443 234 6666555443
No 82
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=23.81 E-value=2.1e+02 Score=19.87 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=34.3
Q ss_pred HhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCccccCCCeeEEEEc
Q 029323 125 EQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIG 178 (195)
Q Consensus 125 ~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGrTev~pgs~TvlAIG 178 (195)
+..|.+. .+-..+ ..+..-.+.|...|+|+++|. |..|+..|++++--..
T Consensus 28 r~~g~~v-~~d~~~-~~l~k~i~~a~~~g~~~~iii--G~~e~~~~~v~vk~~~ 77 (94)
T cd00861 28 QAAGVDV-LLDDRN-ERPGVKFADADLIGIPYRIVV--GKKSAAEGIVEIKVRK 77 (94)
T ss_pred HHCCCEE-EEECCC-CCcccchhHHHhcCCCEEEEE--CCchhhCCEEEEEECC
Confidence 3456543 333333 467777788899999999998 4567888888876553
No 83
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=23.81 E-value=3.9e+02 Score=23.75 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=15.3
Q ss_pred CCCC-CChhhHHHHhhHHHHHHHHH
Q 029323 89 QDLK-MGSGKIASQCAHAATGMYAE 112 (195)
Q Consensus 89 ~DL~-Ms~GKiAAQ~aHAAv~a~~~ 112 (195)
-|++ ++.+.-..++.+-+...|++
T Consensus 81 aD~pfg~y~~~~~~av~~a~r~~~~ 105 (264)
T PRK00311 81 ADMPFGSYQASPEQALRNAGRLMKE 105 (264)
T ss_pred EeCCCCCccCCHHHHHHHHHHHHHH
Confidence 5666 45656666766766666653
No 84
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=23.64 E-value=33 Score=22.77 Aligned_cols=18 Identities=28% Similarity=0.678 Sum_probs=14.0
Q ss_pred CccchhhHHHHhhhhhhc
Q 029323 32 NFIPGLVIGFIFGMLLDL 49 (195)
Q Consensus 32 ~~~~g~~~g~~~g~~~~~ 49 (195)
+|..++++|+++|+++|-
T Consensus 9 ~~~~~i~~g~~~G~~lD~ 26 (55)
T PF09527_consen 9 TMAAPILVGFFLGYWLDK 26 (55)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355678889999999884
No 85
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=23.56 E-value=82 Score=24.04 Aligned_cols=28 Identities=14% Similarity=0.344 Sum_probs=24.8
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHCCC
Q 029323 127 CGQPKIVVTCKNQQEMNKLWEVAENTGL 154 (195)
Q Consensus 127 ~G~~KIVLkv~~e~eL~eL~~~A~~~gl 154 (195)
+|-+--.+.++|++.|+++.+++++.|+
T Consensus 69 ~GvH~HtI~a~~~e~l~~I~~~L~~~G~ 96 (98)
T PF02829_consen 69 GGVHYHTIEAPDEEDLDKIEEALKKKGF 96 (98)
T ss_dssp GGEEEEEEEESSHHHHHHHHHHHHHTT-
T ss_pred CCEeeEEEEECCHHHHHHHHHHHHHCCC
Confidence 5778888999999999999999999985
No 86
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=23.52 E-value=1.6e+02 Score=28.47 Aligned_cols=46 Identities=28% Similarity=0.415 Sum_probs=37.3
Q ss_pred hCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCccccCCCee
Q 029323 126 QCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKT 173 (195)
Q Consensus 126 ~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGrTev~pgs~T 173 (195)
..|+.|.||+-++.++.-+|.+-+.+..| .+|=-.|.|-.-.||+.
T Consensus 86 yrG~sklvL~Pkst~eVS~ILkYCn~~kL--AVVPQGGNTgLVGgSVP 131 (511)
T KOG1232|consen 86 YRGQSKLVLKPKSTEEVSAILKYCNDRKL--AVVPQGGNTGLVGGSVP 131 (511)
T ss_pred ccCCceEEecCCCHHHHHHHHHhhccccE--EEecCCCCcccccCccc
Confidence 36999999999999999999998877764 56667777777777753
No 87
>PF02624 YcaO: YcaO-like family; InterPro: IPR003776 This domain comprises the whole of a protein in Methanocaldococcus jannaschii (Methanococcus jannaschii) and Methanobacterium thermoautotrophicum, all but the N-terminal 60 residues from a protein of Mycobacterium tuberculosis, and all but the C-terminal 180 residues from a protein in Haemophilus influenzae and Escherichia coli, among proteins from published complete genomes.
Probab=23.18 E-value=4.6e+02 Score=22.67 Aligned_cols=67 Identities=21% Similarity=0.197 Sum_probs=36.6
Q ss_pred HHHHHHHhhhCHHHHHHHHh-CCCCeE-EEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCccccCCCeeEEEEc
Q 029323 107 TGMYAELMQSDRHLLRKWEQ-CGQPKI-VVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIG 178 (195)
Q Consensus 107 v~a~~~~~~~~~~~l~~W~~-~G~~KI-VLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGrTev~pgs~TvlAIG 178 (195)
+.+..++.++|. ....|.. ...++| .+......++.+..+.++..|+. ..+.|.- ..-|..|++|+.
T Consensus 125 ~~al~E~iERda-~~~~w~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-v~l~dit---~~~~vpv~~a~~ 193 (332)
T PF02624_consen 125 LHALLEVIERDA-FSLWWYNRLPPPRIDDVLDPTLPELLERLERLREAGLE-VRLFDIT---NDFGVPVVAAVL 193 (332)
T ss_pred HHHHHHHHHHHH-HHHHHHhcCCCCeEecccCcCCHHHHHHHHHhhcCceE-EEEEECC---CCCCceEEEEEE
Confidence 333444544332 3445654 344555 34444556777777776668854 4455642 134667777776
No 88
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.80 E-value=1.3e+02 Score=21.85 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.7
Q ss_pred CeEEEecCCHHHHHHHHHHHHHCCCC
Q 029323 130 PKIVVTCKNQQEMNKLWEVAENTGLP 155 (195)
Q Consensus 130 ~KIVLkv~~e~eL~eL~~~A~~~gl~ 155 (195)
.-+.+.|++.+++.++.+++++.|+.
T Consensus 70 ~~l~f~v~~~~~vd~~~~~l~~~G~~ 95 (124)
T cd09012 70 VLISLSADSREEVDELVEKALAAGGK 95 (124)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHCCCc
Confidence 35789999999999999999999964
No 89
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.63 E-value=1.4e+02 Score=21.28 Aligned_cols=30 Identities=10% Similarity=0.199 Sum_probs=25.0
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHCCCCe
Q 029323 127 CGQPKIVVTCKNQQEMNKLWEVAENTGLPT 156 (195)
Q Consensus 127 ~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~ 156 (195)
.|..-+.+.+++.++++++.+++++.|+..
T Consensus 63 ~~~~hi~f~v~~~~~v~~~~~~l~~~g~~~ 92 (125)
T cd07255 63 TGLYHFAILLPSRADLAAALRRLIELGIPL 92 (125)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHcCCce
Confidence 345567899999999999999999999753
No 90
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=22.56 E-value=1.6e+02 Score=21.17 Aligned_cols=30 Identities=10% Similarity=0.257 Sum_probs=25.1
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHCCCCe
Q 029323 127 CGQPKIVVTCKNQQEMNKLWEVAENTGLPT 156 (195)
Q Consensus 127 ~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~ 156 (195)
.|..-+.+.+++.+++.++.+++++.|++.
T Consensus 67 ~g~~hia~~v~~~~d~~~~~~~l~~~g~~~ 96 (128)
T cd07242 67 PGLHHLAFRAPSREAVDELYARLAKRGAEI 96 (128)
T ss_pred cCeeEEEEEcCCHHHHHHHHHHHHHcCCeE
Confidence 355678999999899999999999999643
No 91
>PRK06724 hypothetical protein; Provisional
Probab=22.49 E-value=1.4e+02 Score=22.80 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=24.9
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHCCCCe
Q 029323 128 GQPKIVVTCKNQQEMNKLWEVAENTGLPT 156 (195)
Q Consensus 128 G~~KIVLkv~~e~eL~eL~~~A~~~gl~~ 156 (195)
|..-+.++|.+.++++++.+.+++.|+++
T Consensus 63 g~~h~af~v~~~~dvd~~~~~l~~~G~~~ 91 (128)
T PRK06724 63 GPRHICYQAINRKVVDEVAEFLSSTKIKI 91 (128)
T ss_pred CceeEEEecCChHHHHHHHHHHHHCCCEE
Confidence 55678899999999999999999999753
No 92
>PRK13937 phosphoheptose isomerase; Provisional
Probab=22.44 E-value=1.9e+02 Score=23.63 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHCCCCeEEEEcCCCccccCCCeeEEEEc
Q 029323 139 QQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIG 178 (195)
Q Consensus 139 e~eL~eL~~~A~~~gl~~~~V~DAGrTev~pgs~TvlAIG 178 (195)
-.++.++.+.|++.|+++..|.+.+.+.+..-.-.+|-+.
T Consensus 119 t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~~ 158 (188)
T PRK13937 119 SPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIVP 158 (188)
T ss_pred cHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeC
Confidence 3688899999999999999998877777766555666663
No 93
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=22.21 E-value=1.5e+02 Score=22.09 Aligned_cols=31 Identities=13% Similarity=-0.041 Sum_probs=26.4
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHCCCCeE
Q 029323 127 CGQPKIVVTCKNQQEMNKLWEVAENTGLPTF 157 (195)
Q Consensus 127 ~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~ 157 (195)
.|..-+.+.++|.+++.++.+.+++.|++..
T Consensus 61 ~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~ 91 (134)
T cd08360 61 AGFHHAAFEVGDIDEVMLGGNHMLRAGYQTG 91 (134)
T ss_pred CcceEEEEEeCCHHHHHHHHHHHHHcCCccc
Confidence 4566799999999999999999999998643
No 94
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=21.84 E-value=1.3e+02 Score=23.05 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=26.6
Q ss_pred CHHHHHHHHhCCCCeEEEecCCHH-----HHHHHHHHHHHCCCCeEEE
Q 029323 117 DRHLLRKWEQCGQPKIVVTCKNQQ-----EMNKLWEVAENTGLPTFVV 159 (195)
Q Consensus 117 ~~~~l~~W~~~G~~KIVLkv~~e~-----eL~eL~~~A~~~gl~~~~V 159 (195)
.++.+......|++.|+--.+|.| ...++.+.|++.||.++-+
T Consensus 16 ~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~i 63 (110)
T PF04273_consen 16 SPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHI 63 (110)
T ss_dssp -HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE-
T ss_pred CHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEe
Confidence 467788888899988887666533 4456788899999976654
No 95
>PF04093 MreD: rod shape-determining protein MreD; InterPro: IPR007227 The MreD (murein formation D) protein is involved in bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore cannot always be identified on the basis of sequence similarity.; GO: 0008360 regulation of cell shape, 0016021 integral to membrane
Probab=21.80 E-value=50 Score=25.74 Aligned_cols=19 Identities=42% Similarity=0.719 Sum_probs=15.8
Q ss_pred cchhhHHHHhhhhhhcCCC
Q 029323 34 IPGLVIGFIFGMLLDLSKP 52 (195)
Q Consensus 34 ~~g~~~g~~~g~~~~~~~~ 52 (195)
..|+++||++|+.+|+-.+
T Consensus 51 ~~g~~~~~~~GLl~D~~~~ 69 (160)
T PF04093_consen 51 RAGLWLGFIIGLLQDIYYG 69 (160)
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 4689999999999998443
No 96
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=21.57 E-value=1.2e+02 Score=23.21 Aligned_cols=25 Identities=12% Similarity=0.606 Sum_probs=22.1
Q ss_pred CCeEEEecCCHHHHHHHHHHHHHCC
Q 029323 129 QPKIVVTCKNQQEMNKLWEVAENTG 153 (195)
Q Consensus 129 ~~KIVLkv~~e~eL~eL~~~A~~~g 153 (195)
.-.++|.++|++|++++.+++.+.|
T Consensus 72 ~~sl~i~~~~~ee~~~~f~~Ls~gG 96 (116)
T PF06983_consen 72 NISLCIECDDEEEIDRIFDKLSEGG 96 (116)
T ss_dssp TEEEEEEESSHHHHHHHHHHHHTTT
T ss_pred cEEEEEEcCCHHHHHHHHHHHHcCC
Confidence 3578889999999999999998886
No 97
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=21.56 E-value=2.2e+02 Score=26.09 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=26.9
Q ss_pred CCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcC
Q 029323 129 QPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADA 162 (195)
Q Consensus 129 ~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DA 162 (195)
++.+|++....-|=....+.+++.||++++|.|+
T Consensus 146 ~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Ds 179 (301)
T COG1184 146 FKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDS 179 (301)
T ss_pred eEEEEEcCCCcchHHHHHHHHHHcCCceEEEech
Confidence 4667777666666677888888999999999997
No 98
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=21.45 E-value=6.3e+02 Score=23.05 Aligned_cols=93 Identities=24% Similarity=0.195 Sum_probs=58.6
Q ss_pred CCCCeeEEEEEeCCCC-------------CChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHH
Q 029323 77 GDQDLKLALVVRQDLK-------------MGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMN 143 (195)
Q Consensus 77 ~~~~~kmviVVR~DL~-------------Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLkv~~e~eL~ 143 (195)
.+++++.++++. +.. .+....+.+.+|+|+....-. ..++++++.-..+..+--. +.+=...+.
T Consensus 157 ~~~~~~~v~~iP-~~e~sT~~aR~vLP~~~~~~daV~n~s~~a~lv~al~-~~~~~l~~~~~~D~ihepy-R~~L~P~~~ 233 (299)
T COG0083 157 FPSDLKLVVVIP-NFEVSTAEARKVLPKSYSRKDAVFNLSRAALLVAALL-EGDPELLRAMMKDVIHEPY-RAKLVPGYA 233 (299)
T ss_pred CCcceEEEEEeC-CccccHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHhccccchhh-hhhhCccHH
Confidence 456888888887 543 357889999999999877554 3455655443332211100 111123566
Q ss_pred HHHHHHHHCCCCeEEEEcCCCccccCCCeeEEEEcCC
Q 029323 144 KLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPG 180 (195)
Q Consensus 144 eL~~~A~~~gl~~~~V~DAGrTev~pgs~TvlAIGP~ 180 (195)
++.+.|.+.|---..|.-|| .|++++-+-
T Consensus 234 ~v~~~a~~~gA~g~~lSGAG--------PTi~al~~~ 262 (299)
T COG0083 234 EVREAALEAGALGATLSGAG--------PTVFALADE 262 (299)
T ss_pred HHHHHHhhCCceEEEEecCC--------CeEEEEecc
Confidence 67777888886667777776 688888554
No 99
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=21.27 E-value=2.4e+02 Score=24.25 Aligned_cols=54 Identities=19% Similarity=0.343 Sum_probs=33.9
Q ss_pred CCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCccccCCCeeEEEEcCCCccchhhh
Q 029323 129 QPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSV 188 (195)
Q Consensus 129 ~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGrTev~pgs~TvlAIGP~p~~~Id~i 188 (195)
.+.+++-++...+-..+ .+|...|||+.-++|- -.+|.- .=+.| |+-.+.+..|
T Consensus 114 ~Pdliiv~dp~~~~~AI-~EA~kl~IP~IaivDT---n~dp~~-VdypI-P~Ndds~~SI 167 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAV-KEAIEVGIPVVALCDT---DNLTSN-VDLVI-PTNNKGRKAL 167 (204)
T ss_pred CCCEEEEECCcccHHHH-HHHHHhCCCEEEEEeC---CCCccc-CceeE-CCCCchHHHH
Confidence 35555555554554444 4578899999999994 445544 33456 7776666554
No 100
>COG5304 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.16 E-value=1.1e+02 Score=23.34 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=24.0
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHCCCCeE
Q 029323 128 GQPKIVVTCKNQQEMNKLWEVAENTGLPTF 157 (195)
Q Consensus 128 G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~ 157 (195)
--+.|.++++ +..|+.+..+|-..|||+-
T Consensus 50 kd~riniRls-s~dLeaIK~kaSa~GlpYQ 78 (92)
T COG5304 50 KDTRINIRLS-SSDLEAIKQKASAEGLPYQ 78 (92)
T ss_pred ccceeeEecC-HHHHHHHHHHHhhcCCcHH
Confidence 3467888997 5789999999999999963
No 101
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=21.14 E-value=3.2e+02 Score=19.54 Aligned_cols=42 Identities=26% Similarity=0.476 Sum_probs=29.8
Q ss_pred HHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCC
Q 029323 120 LLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGR 164 (195)
Q Consensus 120 ~l~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGr 164 (195)
....+...|..-+.+..++.+++.+. .++.++++.++.|.+.
T Consensus 51 ~~~~~~~~~~~vi~is~d~~~~~~~~---~~~~~~~~~~~~D~~~ 92 (124)
T PF00578_consen 51 LYKKYKDKGVQVIGISTDDPEEIKQF---LEEYGLPFPVLSDPDG 92 (124)
T ss_dssp HHHHHHTTTEEEEEEESSSHHHHHHH---HHHHTCSSEEEEETTS
T ss_pred HhhhhccceEEeeecccccccchhhh---hhhhccccccccCcch
Confidence 44566667887888888777755544 4456788999999665
No 102
>TIGR03426 shape_MreD rod shape-determining protein MreD. Members of this protein family are the MreD protein of bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore sometimes tricky to discover by homology, but this model finds most examples.
Probab=21.07 E-value=58 Score=25.45 Aligned_cols=17 Identities=29% Similarity=0.640 Sum_probs=14.7
Q ss_pred chhhHHHHhhhhhhcCC
Q 029323 35 PGLVIGFIFGMLLDLSK 51 (195)
Q Consensus 35 ~g~~~g~~~g~~~~~~~ 51 (195)
.|+..||++|+.+|+-.
T Consensus 49 ~~~~~~f~~Gll~D~~~ 65 (154)
T TIGR03426 49 VGIGTAFVLGLLQDVLS 65 (154)
T ss_pred cchHHHHHHHHHHHHhc
Confidence 48999999999999843
No 103
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=21.00 E-value=2.5e+02 Score=22.08 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHCCCCeEEEEcCCCccccCCCeeEEEE
Q 029323 140 QEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAI 177 (195)
Q Consensus 140 ~eL~eL~~~A~~~gl~~~~V~DAGrTev~pgs~TvlAI 177 (195)
+++.++.+.|++.|+++..|.+.....+..-.-.++-+
T Consensus 93 ~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~~ 130 (154)
T TIGR00441 93 KNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELRV 130 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEe
Confidence 68888999999999999999987776666544444544
No 104
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=20.99 E-value=1.7e+02 Score=21.55 Aligned_cols=26 Identities=8% Similarity=0.029 Sum_probs=22.6
Q ss_pred eEEEecCCHHHHHHHHHHHHHCCCCe
Q 029323 131 KIVVTCKNQQEMNKLWEVAENTGLPT 156 (195)
Q Consensus 131 KIVLkv~~e~eL~eL~~~A~~~gl~~ 156 (195)
.+.++++|.+++.++.+++++.|++.
T Consensus 62 ~iaf~v~~~~dv~~~~~~l~~~G~~~ 87 (124)
T cd08361 62 ASGFELRDDDALESAATELEQYGHEV 87 (124)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCce
Confidence 47889999999999999999999764
No 105
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=20.91 E-value=2.1e+02 Score=22.11 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=25.5
Q ss_pred CeEEEecCCHHHHHHHHHHHHHCCCCeEEEEc
Q 029323 130 PKIVVTCKNQQEMNKLWEVAENTGLPTFVVAD 161 (195)
Q Consensus 130 ~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~D 161 (195)
-||.|+-.+..++.-|...|++.|+|....-|
T Consensus 57 ~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d 88 (100)
T PF15608_consen 57 WKVLVRDPDDPDLAHLLLLAEEKGVPVEVYPD 88 (100)
T ss_pred CEEEECCCCCccHHHHHHHHHHcCCcEEEeCC
Confidence 47777777778888899999999998776644
No 106
>PF10166 DUF2368: Uncharacterised conserved protein (DUF2368); InterPro: IPR019319 This family is conserved from nematodes to humans. The function is not known.
Probab=20.84 E-value=51 Score=26.54 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=22.1
Q ss_pred cCCCccchhhHHHHhhhhhhcCCCC
Q 029323 29 RPENFIPGLVIGFIFGMLLDLSKPG 53 (195)
Q Consensus 29 ~~~~~~~g~~~g~~~g~~~~~~~~~ 53 (195)
+|.-++|=+-++|++||-||+.++.
T Consensus 73 ~~~~l~PlvPL~fv~~Yq~D~ayG~ 97 (131)
T PF10166_consen 73 NPLFLIPLVPLTFVLGYQYDMAYGT 97 (131)
T ss_pred CcchhhhHHHHHHHHHHHHHHHhhH
Confidence 5788889999999999999998775
No 107
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=20.73 E-value=3.2e+02 Score=24.53 Aligned_cols=55 Identities=22% Similarity=0.445 Sum_probs=34.3
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCccccCCCeeEEEEcCCCccchhhh
Q 029323 128 GQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSV 188 (195)
Q Consensus 128 G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGrTev~pgs~TvlAIGP~p~~~Id~i 188 (195)
+.+-+++-++.-.|=..+ .+|...|||.+.++| |.-.|.-++. .| |+..+.+..|
T Consensus 155 ~~Pd~l~ViDp~~e~iAv-~EA~klgIPVvAlvD---Tn~dpd~VD~-~I-P~Ndda~rsi 209 (252)
T COG0052 155 GLPDVLFVIDPRKEKIAV-KEANKLGIPVVALVD---TNCDPDGVDY-VI-PGNDDAIRSI 209 (252)
T ss_pred CCCCEEEEeCCcHhHHHH-HHHHHcCCCEEEEec---CCCCCccCce-ee-cCCChHHHHH
Confidence 446666555554444444 458899999999999 4455554443 34 7766655543
No 108
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=20.48 E-value=3e+02 Score=18.95 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcC
Q 029323 102 CAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADA 162 (195)
Q Consensus 102 ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DA 162 (195)
-|+.|...-.... +++ .+..+...+.--+-+-+++.+... .....|+|+++|.|+
T Consensus 28 wC~~C~~l~~~~~-~~~-~v~~~~~~~fv~v~vd~~~~~~~~----~~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 28 WCPPCKKLEREVF-SDP-EVQEALNKNFVLVKVDVDDEDPNA----QFDRQGYPTFFFLDP 82 (82)
T ss_dssp TTHHHHHHHHHTT-TSH-HHHHHHHHCSEEEEEETTTHHHHH----HHHHCSSSEEEEEET
T ss_pred CCHhHHHHHHHHc-CCH-HHHHHHHCCEEEEEEEcCCCChhH----HhCCccCCEEEEeCC
Confidence 4566666444433 344 455655556555555555544433 222379999999884
No 109
>PRK10404 hypothetical protein; Provisional
Probab=20.42 E-value=61 Score=24.81 Aligned_cols=21 Identities=33% Similarity=0.697 Sum_probs=15.5
Q ss_pred ccceeeeeccCCCccchhhHHHHhhhhh
Q 029323 20 EKVSLAVSFRPENFIPGLVIGFIFGMLL 47 (195)
Q Consensus 20 ~~~~~~~~~~~~~~~~g~~~g~~~g~~~ 47 (195)
+.||=++.+ +..+||++|+++
T Consensus 78 e~Pw~avGi-------aagvGlllG~Ll 98 (101)
T PRK10404 78 EKPWQGIGV-------GAAVGLVLGLLL 98 (101)
T ss_pred hCcHHHHHH-------HHHHHHHHHHHH
Confidence 468877664 667888888775
No 110
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=20.28 E-value=76 Score=31.25 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEE
Q 029323 102 CAHAATGMYAELMQSDRHLLRKWEQCGQPKIV 133 (195)
Q Consensus 102 ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIV 133 (195)
--|||+.+|..+..-+|..++.|..-||.=-+
T Consensus 379 Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 379 NTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 36899999999999999999999877765433
No 111
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.18 E-value=2.9e+02 Score=19.13 Aligned_cols=59 Identities=15% Similarity=0.276 Sum_probs=36.5
Q ss_pred CeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCccccCCCeeEEEEcCCCccchhhhcC
Q 029323 130 PKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTG 190 (195)
Q Consensus 130 ~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg 190 (195)
.+.++-.+|-.+.....+.+++.|+++.++- .= .++.+|=-.++-+-+...+.+..+..
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~liP-~P-~~i~~~CG~al~~~~~d~~~i~~~l~ 60 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLIP-TP-REISAGCGLALRFEPEDLEKIKEILE 60 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEeC-CC-hhccCCCCEEEEEChhhHHHHHHHHH
Confidence 4556678888888889999999999877762 00 12223334556665555555544443
No 112
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=20.17 E-value=60 Score=23.17 Aligned_cols=17 Identities=35% Similarity=0.733 Sum_probs=11.4
Q ss_pred ccchhhHHHHhhhhhhc
Q 029323 33 FIPGLVIGFIFGMLLDL 49 (195)
Q Consensus 33 ~~~g~~~g~~~g~~~~~ 49 (195)
..-|+++|+++|+.+-+
T Consensus 62 l~l~~~~Gl~lgi~~~~ 78 (82)
T PF13807_consen 62 LALGLFLGLILGIGLAF 78 (82)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34477788888876654
No 113
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=20.16 E-value=63 Score=25.30 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=16.7
Q ss_pred cccceeeeeccCCCccchhhHHHHhhhhhh
Q 029323 19 QEKVSLAVSFRPENFIPGLVIGFIFGMLLD 48 (195)
Q Consensus 19 ~~~~~~~~~~~~~~~~~g~~~g~~~g~~~~ 48 (195)
++.||-++.. |..|||++|+++.
T Consensus 80 ~e~PWq~VGv-------aAaVGlllGlLls 102 (104)
T COG4575 80 RENPWQGVGV-------AAAVGLLLGLLLS 102 (104)
T ss_pred HcCCchHHHH-------HHHHHHHHHHHHh
Confidence 3568877654 6778888888874
Done!