Query 029323
Match_columns 195
No_of_seqs 165 out of 609
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 18:05:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rlk_A Hypothetical protein TA 100.0 4.1E-47 1.4E-51 295.3 14.1 117 79-195 1-117 (117)
2 1wn2_A Peptidyl-tRNA hydrolase 100.0 8.4E-47 2.9E-51 295.4 13.9 117 79-195 5-121 (121)
3 1q7s_A BIT1, protein CGI-147; 100.0 6.6E-47 2.3E-51 294.1 12.2 117 79-195 1-117 (117)
4 2zv3_A PTH, peptidyl-tRNA hydr 100.0 9.3E-47 3.2E-51 292.5 13.0 115 81-195 1-115 (115)
5 1rzw_A Protein AF2095(GR4); be 100.0 6.5E-47 2.2E-51 297.4 11.8 114 79-195 1-114 (123)
6 1xty_A PTH, peptidyl-tRNA hydr 100.0 2.9E-46 1E-50 291.6 13.7 116 80-195 1-120 (120)
7 2gax_A Hypothetical protein AT 99.9 1.2E-24 4.2E-29 172.6 3.1 113 80-195 3-134 (135)
8 1scf_A Stem cell factor; steel 65.3 1.3 4.5E-05 38.3 0.0 42 3-47 190-236 (273)
9 2l82_A Designed protein OR32; 51.1 48 0.0016 25.6 6.7 43 120-162 68-112 (162)
10 1mli_A Muconolactone isomerase 48.9 18 0.00061 26.7 3.8 74 83-161 1-78 (96)
11 1v95_A Nuclear receptor coacti 47.3 15 0.00052 28.3 3.3 56 122-179 29-84 (130)
12 3or5_A Thiol:disulfide interch 46.2 43 0.0015 23.9 5.6 10 152-161 115-124 (165)
13 3e5d_A Putative glyoxalase I; 44.4 39 0.0013 22.8 4.9 31 127-157 70-100 (127)
14 3raz_A Thioredoxin-related pro 41.6 17 0.00057 26.1 2.7 33 127-162 56-88 (151)
15 1uxy_A MURB, uridine diphospho 40.8 22 0.00074 31.1 3.7 39 124-163 9-47 (340)
16 3lwa_A Secreted thiol-disulfid 35.9 99 0.0034 22.7 6.4 41 120-163 84-132 (183)
17 1twu_A Hypothetical protein YY 35.1 67 0.0023 22.4 5.1 29 128-156 77-105 (139)
18 3tx1_A UDP-N-acetylenolpyruvoy 33.9 31 0.0011 29.8 3.6 40 124-164 49-88 (322)
19 3r8n_B 30S ribosomal protein S 30.4 33 0.0011 28.4 3.0 54 129-188 149-202 (218)
20 2ki0_A DS119; beta-alpha-beta, 30.1 21 0.00072 21.5 1.3 24 136-159 11-34 (36)
21 3bch_A 40S ribosomal protein S 28.1 1E+02 0.0036 26.2 5.8 53 129-187 151-203 (253)
22 1ogd_A High affinity ribose tr 27.4 43 0.0015 25.7 3.0 37 155-192 22-62 (131)
23 2kjz_A ATC0852; protein of unk 27.0 81 0.0028 22.6 4.4 29 127-155 85-113 (144)
24 1xqa_A Glyoxalase/bleomycin re 26.8 92 0.0032 20.6 4.4 29 127-155 59-87 (113)
25 1hsk_A UDP-N-acetylenolpyruvoy 26.5 47 0.0016 28.5 3.4 40 124-164 43-82 (326)
26 2rbb_A Glyoxalase/bleomycin re 26.3 70 0.0024 22.4 3.9 25 131-155 78-102 (141)
27 3r4q_A Lactoylglutathione lyas 26.3 1.4E+02 0.0048 21.5 5.7 30 128-157 76-105 (160)
28 3bbn_B Ribosomal protein S2; s 25.7 65 0.0022 26.9 4.0 54 129-188 157-210 (231)
29 2a4x_A Mitomycin-binding prote 25.7 95 0.0032 21.6 4.5 30 128-157 71-100 (138)
30 1uta_A FTSN, MSGA, cell divisi 25.4 67 0.0023 21.6 3.4 45 137-189 18-63 (81)
31 3v7q_A Probable ribosomal prot 25.2 1.8E+02 0.0062 20.5 6.6 42 119-160 25-68 (101)
32 3j20_B 30S ribosomal protein S 25.0 1.1E+02 0.0036 25.2 5.1 52 129-186 111-162 (202)
33 2aif_A Ribosomal protein L7A; 24.6 80 0.0027 23.8 4.1 43 119-161 47-92 (135)
34 3i99_A UDP-N-acetylenolpyruvoy 24.5 20 0.00067 31.7 0.6 41 123-164 24-64 (357)
35 4bby_A Alkyldihydroxyacetoneph 24.2 84 0.0029 29.5 5.0 45 118-163 192-238 (658)
36 1vi6_A 30S ribosomal protein S 24.0 1E+02 0.0034 25.4 4.8 53 129-187 115-167 (208)
37 3gl3_A Putative thiol:disulfid 23.4 1.7E+02 0.0058 20.3 5.5 17 121-137 54-70 (152)
38 1w41_A 50S ribosomal protein L 23.2 1.9E+02 0.0065 20.2 5.7 41 119-159 22-64 (101)
39 3rja_A Carbohydrate oxidase; p 23.0 1.1E+02 0.0039 27.4 5.4 38 127-165 34-71 (473)
40 3rhe_A NAD-dependent benzaldeh 22.7 1.1E+02 0.0036 22.2 4.4 29 128-156 67-95 (148)
41 3ghd_A A cystathionine beta-sy 22.6 65 0.0022 21.1 2.9 30 135-164 4-33 (70)
42 2obb_A Hypothetical protein; s 22.3 1E+02 0.0036 23.4 4.4 43 119-161 31-73 (142)
43 3j21_Z 50S ribosomal protein L 21.5 2.1E+02 0.0073 19.9 6.2 67 119-186 21-95 (99)
44 3ct8_A Protein BH2160, putativ 21.1 1.1E+02 0.0038 21.8 4.1 29 127-155 85-113 (146)
45 3bzy_B ESCU; auto cleavage pro 20.3 1.3E+02 0.0045 21.1 4.2 30 127-157 15-44 (83)
No 1
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=100.00 E-value=4.1e-47 Score=295.30 Aligned_cols=117 Identities=38% Similarity=0.596 Sum_probs=114.2
Q ss_pred CCeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029323 79 QDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFV 158 (195)
Q Consensus 79 ~~~kmviVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~ 158 (195)
+++|||||||+||+|++||+||||||||+++|.++++++++.+++|+.+||+||||+++|+++|++|.++|++.|||+++
T Consensus 1 ~e~k~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~kiVlk~~~e~~l~~l~~~a~~~gl~~~~ 80 (117)
T 1rlk_A 1 MVKKMVIAVRKDLDMGKGKIAAQVAHAAVTCAIRSMKINRDVFNEWYDEGQRKIVVKVNDLDEIMEIKRMADSMGIVNEI 80 (117)
T ss_dssp -CEEEEEEEESTTCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEE
T ss_pred CCcEEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHHCCCCEEE
Confidence 47999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred EEcCCCccccCCCeeEEEEcCCCccchhhhcCCCCCC
Q 029323 159 VADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 195 (195)
Q Consensus 159 V~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl 195 (195)
|+||||||++|||.|||||||+|++.||+||||||||
T Consensus 81 v~DAG~Tei~~gt~TvlaigP~~~~~vd~itg~lkL~ 117 (117)
T 1rlk_A 81 VQDRGYTQVEPGTITCIGLGPDEEEKLDKITGKYKLL 117 (117)
T ss_dssp EECCCSSSSSCCCEEEEEEEEEEHHHHHHHHTTSCBC
T ss_pred EEeCCccCcCCCCEEEEEeCcCCHHHHHHHcCCCCCC
Confidence 9999999999999999999999999999999999997
No 2
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=100.00 E-value=8.4e-47 Score=295.37 Aligned_cols=117 Identities=41% Similarity=0.644 Sum_probs=114.5
Q ss_pred CCeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029323 79 QDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFV 158 (195)
Q Consensus 79 ~~~kmviVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~ 158 (195)
.++|||||||+||+|++||+||||||||+++|+++.+++++.+++|+.+||+||||+++|+++|++|.++|++.|||+++
T Consensus 5 ~~~k~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~Kvvlk~~~e~el~~l~~~a~~~gl~~~~ 84 (121)
T 1wn2_A 5 FKYKQVIVARADLKLSKGKLAAQVAHGAVTAAFEAYKKKREWFEAWFREGQKKVVVKVESEEELFKLKAEAEKLGLPNAL 84 (121)
T ss_dssp CCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred ccceEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEE
Confidence 57899999999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred EEcCCCccccCCCeeEEEEcCCCccchhhhcCCCCCC
Q 029323 159 VADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 195 (195)
Q Consensus 159 V~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl 195 (195)
|+||||||++|||.|||||||+|++.||+||||||||
T Consensus 85 i~DAG~Tei~~gt~TvlaigP~~~~~vd~itg~LkL~ 121 (121)
T 1wn2_A 85 IRDAGLTEIPPGTVTVLAVGPAPEEIVDKVTGNLKLL 121 (121)
T ss_dssp EECTTCTTSCTTCEEEEEEEEEEHHHHHHHHTTSEEC
T ss_pred EEcCCccccCCCCEEEEEeccCCHHHHHHhcCCCCCC
Confidence 9999999999999999999999999999999999997
No 3
>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1
Probab=100.00 E-value=6.6e-47 Score=294.11 Aligned_cols=117 Identities=47% Similarity=0.858 Sum_probs=114.5
Q ss_pred CCeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029323 79 QDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFV 158 (195)
Q Consensus 79 ~~~kmviVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~ 158 (195)
+++|||||||+||+|++||+||||||||+++|+.+.+++++.+++|+..||+||||+++|+++|++|.++|++.|||+++
T Consensus 1 ~~~K~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~KVvlk~~~e~~l~~l~~~a~~~gl~~~~ 80 (117)
T 1q7s_A 1 GEYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDEETLIALLAHAKMLGLTVSL 80 (117)
T ss_dssp CCEEEEEEEEGGGCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHhCCCeeEEEEcCCHHHHHHHHHHHHHCCCCEEE
Confidence 47999999999999999999999999999999999878899999999999999999999999999999999999999999
Q ss_pred EEcCCCccccCCCeeEEEEcCCCccchhhhcCCCCCC
Q 029323 159 VADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 195 (195)
Q Consensus 159 V~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl 195 (195)
|+||||||++|||.|||||||+|++.||+||||||||
T Consensus 81 i~DAG~Tqi~~gt~TvlaigP~~~~~vd~itg~lkL~ 117 (117)
T 1q7s_A 81 IQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKLY 117 (117)
T ss_dssp EEECSSSSEEEEEEEEEEEEEEEHHHHHHHHTTSCBC
T ss_pred EEECCCcccCCCCeEEEEeccCCHHHHHHhcCCCCCC
Confidence 9999999999999999999999999999999999997
No 4
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=9.3e-47 Score=292.50 Aligned_cols=115 Identities=34% Similarity=0.642 Sum_probs=105.9
Q ss_pred eeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEE
Q 029323 81 LKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVA 160 (195)
Q Consensus 81 ~kmviVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~ 160 (195)
+|||||||+||+|++||+||||||||+++|.++.+++++.+++|+.+||+||||+++|+++|++|.++|++.|||+++|+
T Consensus 1 ~k~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~kivlk~~~e~~l~~l~~~a~~~gl~~~~i~ 80 (115)
T 2zv3_A 1 MKMVVVIRNDLGMGKGKMVAQGGHAIIEAFLDAKRKNPRAVDEWLREGQKKVVVKVNSEKELIDIYNKARSEGLPCSIIR 80 (115)
T ss_dssp CEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 69999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred cCCCccccCCCeeEEEEcCCCccchhhhcCCCCCC
Q 029323 161 DAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 195 (195)
Q Consensus 161 DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl 195 (195)
||||||++|||.|||||||+|++.||+||||||||
T Consensus 81 DAG~Tei~~gt~TvlaigP~~~~~vd~itg~lkL~ 115 (115)
T 2zv3_A 81 DAGHTQLEPGTLTAVAIGPEKDEKIDKITGHLKLL 115 (115)
T ss_dssp ECC-------EEEEEEEEEECHHHHHHHHTTSCBC
T ss_pred eCCceecCCCCEEEEEeCcCCHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999997
No 5
>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A
Probab=100.00 E-value=6.5e-47 Score=297.43 Aligned_cols=114 Identities=44% Similarity=0.586 Sum_probs=110.6
Q ss_pred CCeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029323 79 QDLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFV 158 (195)
Q Consensus 79 ~~~kmviVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~~~~l~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~ 158 (195)
.++|||||||+||+||+||+||||||||+++|+.+ +++++++|+.+||+||||+++|+++|++|.++|++.|||+++
T Consensus 1 ~~~k~vivVr~DL~M~~GKiaAQ~~HAa~~~~~~~---~~~~l~~W~~~G~~Kvvlk~~~e~el~~L~~~a~~~gl~~~~ 77 (123)
T 1rzw_A 1 MTLKQVIVVRDDLKLSRGKLAVQVAHAAIIGYLKS---DSSLRRKWLDEGQKKVVLKVKSLEELLGIKHKAESLGLVTGL 77 (123)
T ss_dssp CCCEEEEEEECCCSSCTTHHHHHHHHHHHHHHHHH---HTTHHHHTGGGCSSEEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcEEEEEEECCCCCCcchHHHHHHHHHHHHHHHc---CHHHHHHHHHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEE
Confidence 47999999999999999999999999999999887 467899999999999999999999999999999999999999
Q ss_pred EEcCCCccccCCCeeEEEEcCCCccchhhhcCCCCCC
Q 029323 159 VADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 195 (195)
Q Consensus 159 V~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl 195 (195)
|+|||||||||||.|||||||+|++.||+||||||||
T Consensus 78 I~DAG~Tei~pgt~TvlaigP~p~~~vd~itg~LkL~ 114 (123)
T 1rzw_A 78 VQDAGLTEVPPGTITAVVIGPDEERKIDKVTGNLPLL 114 (123)
T ss_dssp ECCTTCCSCSTTSCEEEEEEEECHHHHHHHHTCSCCC
T ss_pred EECCCCcccCCCCEEEEEeCcCCHHHHHHhcCCCeec
Confidence 9999999999999999999999999999999999997
No 6
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=100.00 E-value=2.9e-46 Score=291.60 Aligned_cols=116 Identities=44% Similarity=0.730 Sum_probs=112.4
Q ss_pred CeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHhhhC----HHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCC
Q 029323 80 DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELMQSD----RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLP 155 (195)
Q Consensus 80 ~~kmviVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~~~~----~~~l~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~ 155 (195)
++|||||||+||+|++||+||||||||+++|+++.+++ ++.+++|+.+||+||||+++|+++|++|.++|++.|||
T Consensus 1 ~~k~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~~~~~W~~~g~~KiVlk~~~e~el~~l~~~a~~~gl~ 80 (120)
T 1xty_A 1 MIKMVIVVRSDIKMGKGKIAAQVAHAAVTLVVSIINSNNLRWKEWLNEWLHQGQPKIIVKVNSLDEIISRAKKAETMNLP 80 (120)
T ss_dssp CEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHCCCcEEEEecCCHHHHHHHHHHHHHCCCC
Confidence 48999999999999999999999999999999987665 88999999999999999999999999999999999999
Q ss_pred eEEEEcCCCccccCCCeeEEEEcCCCccchhhhcCCCCCC
Q 029323 156 TFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 195 (195)
Q Consensus 156 ~~~V~DAGrTev~pgs~TvlAIGP~p~~~Id~iTg~LKLl 195 (195)
+++|+||||||++|||.|||||||+|++.||+||||||||
T Consensus 81 ~~~i~DAG~Tei~~gs~TvlaigP~~~~~vd~itg~LkL~ 120 (120)
T 1xty_A 81 FSIIEDAGKTQLEPGTITCLGIGPAPENLVDSITGDLKLL 120 (120)
T ss_dssp EEEEECCSSSSSCTTCEEEEEEEEEEHHHHHHHHTTCEEC
T ss_pred EEEEEcCCccccCCCCeEEEEeccCCHHHHHHHhCCCCCC
Confidence 9999999999999999999999999999999999999997
No 7
>2gax_A Hypothetical protein ATU0240; MCSG, structural genomics, agrobacterium tumfaciens, hypothe protein, PSI; 1.80A {Agrobacterium tumefaciens str} SCOP: c.131.1.1
Probab=99.89 E-value=1.2e-24 Score=172.64 Aligned_cols=113 Identities=19% Similarity=0.228 Sum_probs=105.1
Q ss_pred CeeEEEEEeCCCCCChhhHHHHhhHHHHHHHHHHh------hhCHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCC
Q 029323 80 DLKLALVVRQDLKMGSGKIASQCAHAATGMYAELM------QSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTG 153 (195)
Q Consensus 80 ~~kmviVVR~DL~Ms~GKiAAQ~aHAAv~a~~~~~------~~~~~~l~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~g 153 (195)
+.|+|||||.||+|+ ++++||||++++++.+.. ..+.+....|...+++++||++++ ++|.+|.++|.+.+
T Consensus 3 ~~K~viVv~~dL~~g--~~aN~aA~l~~gl~~~~~~~~G~~~~d~~g~~~~~~~~~p~~VL~a~~-~~L~~l~~~a~~~~ 79 (135)
T 2gax_A 3 DTKIAVILRDDLAVW--QKLNVTAFLMSGIVAQTGEIIGEPYRDGAGNVYNPLSIQPIVVMATDQ-EALRKIHQRSLERD 79 (135)
T ss_dssp SEEEEEEEETTSCHH--HHHHHHHHHHHHHHHHCGGGBCSCEECTTSCEECCCBSSCEEEEEECH-HHHHHHHHHHHHTT
T ss_pred CcEEEEEEcCCChHH--HHHHHHHHHHHHHHHhChhhcCCcccCcccccccccCCCcEEEEEECH-HHHHHHHHHHHHCC
Confidence 679999999999987 999999999999998764 246666788999999999999998 99999999999999
Q ss_pred CCeEEEEcCCC------------ccccCCCeeEEEEc-CCCccchhhhcCCCCCC
Q 029323 154 LPTFVVADAGR------------TQVSAGSKTVLAIG-PGPKSLVDSVTGKQRLL 195 (195)
Q Consensus 154 l~~~~V~DAGr------------Tev~pgs~TvlAIG-P~p~~~Id~iTg~LKLl 195 (195)
|+++.+.|+|+ ||+++++.|++||| |+|++.||++||+|+|+
T Consensus 80 l~~~~f~d~~~~~~~~~~~~~~~~~~~~~~l~~~GI~l~Gp~k~VdklTg~L~L~ 134 (135)
T 2gax_A 80 ITTSLYIEEMFATGHDAANRQVFSHFSPDTAKVVGMALRADRKIVDKITKGAKLH 134 (135)
T ss_dssp CCCEEEEGGGGGCCCHHHHHHHHTTCCTTTCCEEEEEEEEEHHHHHHHTTTCEEC
T ss_pred CcEEeccHHhhhCCCHHHHHHHHhcCCcccceEEEEEEECCHHHHHHHhCCCCCC
Confidence 99999999999 99999999999999 99999999999999985
No 8
>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth factor, hormone/growth factor complex; HET: 1PE; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 1exz_A 2e9w_C* 2o27_A 2o26_A
Probab=65.28 E-value=1.3 Score=38.31 Aligned_cols=42 Identities=38% Similarity=0.568 Sum_probs=0.0
Q ss_pred CCC-CCChhhhhHhhhhccc----ceeeeeccCCCccchhhHHHHhhhhh
Q 029323 3 ASQ-QNSSQLSNKKQQKQEK----VSLAVSFRPENFIPGLVIGFIFGMLL 47 (195)
Q Consensus 3 ~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~g~~~g~~~ 47 (195)
+|+ ||.+..++||...--+ +|.+..+ |+ +--|||||++|.+|
T Consensus 190 as~lrn~ss~sn~~a~~~~~~~slq~~~~~l-~a--l~slvigf~~ga~~ 236 (273)
T 1scf_A 190 ASSLRNDSSSSNRKAKNPPGDSSLHWAAMAL-PA--LFSLIIGFAFGALY 236 (273)
T ss_dssp --------------------------------------------------
T ss_pred chhccCccccccccccCCCCCcchhhHHHHH-HH--HHHHHHHHHHHHHh
Confidence 344 8888888883322111 6777765 33 33689999999887
No 9
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=51.05 E-value=48 Score=25.65 Aligned_cols=43 Identities=28% Similarity=0.481 Sum_probs=32.9
Q ss_pred HHHHHHhCCCCeEE--EecCCHHHHHHHHHHHHHCCCCeEEEEcC
Q 029323 120 LLRKWEQCGQPKIV--VTCKNQQEMNKLWEVAENTGLPTFVVADA 162 (195)
Q Consensus 120 ~l~~W~~~G~~KIV--Lkv~~e~eL~eL~~~A~~~gl~~~~V~DA 162 (195)
....|+...|--+| +..+|.+.+.+..+.|++.|+..++|+..
T Consensus 68 ireiwerypqldvvvivttddkewikdfieeakergvevfvvynn 112 (162)
T 2l82_A 68 IREIWERYPQLDVVVIVTTDDKEWIKDFIEEAKERGVEVFVVYNN 112 (162)
T ss_dssp HHHHHHHCTTCCEEEEEECCCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHhCCCCcEEEEEecCcHHHHHHHHHHHHhcCcEEEEEecC
Confidence 34679887665544 44577778888999999999999998754
No 10
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=48.87 E-value=18 Score=26.73 Aligned_cols=74 Identities=16% Similarity=0.239 Sum_probs=42.2
Q ss_pred EEEEEeCCCCCChhhHHHHhhH--HHHHHHHHHhhhCHHHHHHHHhCCCCe--EEEecCCHHHHHHHHHHHHHCCCCeEE
Q 029323 83 LALVVRQDLKMGSGKIASQCAH--AATGMYAELMQSDRHLLRKWEQCGQPK--IVVTCKNQQEMNKLWEVAENTGLPTFV 158 (195)
Q Consensus 83 mviVVR~DL~Ms~GKiAAQ~aH--AAv~a~~~~~~~~~~~l~~W~~~G~~K--IVLkv~~e~eL~eL~~~A~~~gl~~~~ 158 (195)
|-+.|+.+++.+.+--+.+..- |.-.+|..-.+..-.+..-|+-.|+.. -+..|+|.++|.+|.. ++|-+-
T Consensus 1 MlFlV~m~V~~P~~~~~~~~~~~~a~Eka~a~eLq~~G~~~~lWRv~G~y~nisIfdv~s~~eLh~iL~-----~LPLfp 75 (96)
T 1mli_A 1 MLFHVKMTVKLPVDMDPAKATQLKADEKELAQRLQREGTWRHLWRIAGHYANYSVFDVPSVEALHDTLM-----QLPLFP 75 (96)
T ss_pred CeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeEEEEEecCCccEEEEEEcCCHHHHHHHHH-----hCCCCc
Confidence 4567777776654433333221 111222222222233445677667644 3668999999998876 788887
Q ss_pred EEc
Q 029323 159 VAD 161 (195)
Q Consensus 159 V~D 161 (195)
+.+
T Consensus 76 ym~ 78 (96)
T 1mli_A 76 YMD 78 (96)
T ss_pred eEE
Confidence 774
No 11
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=47.33 E-value=15 Score=28.33 Aligned_cols=56 Identities=18% Similarity=0.102 Sum_probs=42.2
Q ss_pred HHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCccccCCCeeEEEEcC
Q 029323 122 RKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGP 179 (195)
Q Consensus 122 ~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGrTev~pgs~TvlAIGP 179 (195)
......|.+.-+..-++.+.|-.-...|+..++|+.+|+ |-.|++.||+||--.+-
T Consensus 29 ~~L~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVV--G~kE~e~~sVsVR~r~~ 84 (130)
T 1v95_A 29 RKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVI--TQQHQIHRSCTVNIMFG 84 (130)
T ss_dssp HHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEE--CHHHHHHTEEEEEECSS
T ss_pred HHHHHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEE--echHHhcCeeEEEecCC
Confidence 444566887766443323678887888899999999998 67899999999986654
No 12
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=46.20 E-value=43 Score=23.87 Aligned_cols=10 Identities=60% Similarity=0.886 Sum_probs=5.8
Q ss_pred CCCCeEEEEc
Q 029323 152 TGLPTFVVAD 161 (195)
Q Consensus 152 ~gl~~~~V~D 161 (195)
.++|+.++.|
T Consensus 115 ~~~P~~~lid 124 (165)
T 3or5_A 115 TGIPTSFVID 124 (165)
T ss_dssp CSSSEEEEEC
T ss_pred CCCCeEEEEC
Confidence 3566666655
No 13
>3e5d_A Putative glyoxalase I; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 2.70A {Listeria monocytogenes str}
Probab=44.40 E-value=39 Score=22.82 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=27.0
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHCCCCeE
Q 029323 127 CGQPKIVVTCKNQQEMNKLWEVAENTGLPTF 157 (195)
Q Consensus 127 ~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~ 157 (195)
.|..-+.+.|+|.+++.++.+++++.|+...
T Consensus 70 ~g~~hi~~~v~d~~~v~~~~~~l~~~G~~~~ 100 (127)
T 3e5d_A 70 LGWAHIAISTGTKEAVDELTEKLRQDGFAIA 100 (127)
T ss_dssp SSCCCEEEECSSHHHHHHHHHHHHHTTCCEE
T ss_pred CceEEEEEEcCCHHHHHHHHHHHHHcCCeEe
Confidence 4667899999999999999999999998654
No 14
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=41.61 E-value=17 Score=26.15 Aligned_cols=33 Identities=3% Similarity=-0.002 Sum_probs=17.1
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcC
Q 029323 127 CGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADA 162 (195)
Q Consensus 127 ~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DA 162 (195)
.+..-+.+.+++.+++. +-++..++++.++.|.
T Consensus 56 ~~v~vv~v~~d~~~~~~---~~~~~~~~~~~~~~~~ 88 (151)
T 3raz_A 56 GSVDMVGIALDTSDNIG---NFLKQTPVSYPIWRYT 88 (151)
T ss_dssp TTEEEEEEESSCHHHHH---HHHHHSCCSSCEEEEC
T ss_pred CCeEEEEEECCChHHHH---HHHHHcCCCCceEecC
Confidence 44455556666655544 3344455555555544
No 15
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A*
Probab=40.78 E-value=22 Score=31.11 Aligned_cols=39 Identities=18% Similarity=0.445 Sum_probs=32.3
Q ss_pred HHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCC
Q 029323 124 WEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAG 163 (195)
Q Consensus 124 W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAG 163 (195)
|.-.|.+..++.+.|++|+.++.+.|.+.++|..+ +-.|
T Consensus 9 ~~igg~a~~~v~p~s~eel~~~l~~a~~~~~pv~v-lGgG 47 (340)
T 1uxy_A 9 FGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLI-LGEG 47 (340)
T ss_dssp TCCCCBEEEEEEESSHHHHHHHHHHHHHTTCCEEE-ESSC
T ss_pred CCCCccccEEEEeCCHHHHHHHHHHHHHcCCCEEE-ECCC
Confidence 45567889999999999999999999999998654 4444
No 16
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=35.87 E-value=99 Score=22.72 Aligned_cols=41 Identities=10% Similarity=0.247 Sum_probs=21.2
Q ss_pred HHHHHHhCCC------CeEEEecCC--HHHHHHHHHHHHHCCCCeEEEEcCC
Q 029323 120 LLRKWEQCGQ------PKIVVTCKN--QQEMNKLWEVAENTGLPTFVVADAG 163 (195)
Q Consensus 120 ~l~~W~~~G~------~KIVLkv~~--e~eL~eL~~~A~~~gl~~~~V~DAG 163 (195)
..+.+...|. .-+.+.+++ .+.+. +-++..++++.++.|..
T Consensus 84 l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~---~~~~~~~~~~~~~~d~~ 132 (183)
T 3lwa_A 84 IHEELQAAGNGDTPGGTVLGINVRDYSRDIAQ---DFVTDNGLDYPSIYDPP 132 (183)
T ss_dssp HHHHHHHCC---CCSEEEEEEECSCCCHHHHH---HHHHHTTCCSCEEECTT
T ss_pred HHHHHHhcCCCccCCcEEEEEECCCCCHHHHH---HHHHHcCCCccEEECCc
Confidence 3455555555 455555554 44444 44445666666666553
No 17
>1twu_A Hypothetical protein YYCE; structural genomics, protein structure initiative, MCSG, DUP of the alpha-beta sandwichs. bacillus subtilis, PSI; 2.00A {Bacillus subtilis} SCOP: d.32.1.8
Probab=35.11 E-value=67 Score=22.44 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=24.8
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHCCCCe
Q 029323 128 GQPKIVVTCKNQQEMNKLWEVAENTGLPT 156 (195)
Q Consensus 128 G~~KIVLkv~~e~eL~eL~~~A~~~gl~~ 156 (195)
+..-+.+.|+|.+++.++.+.+++.|+..
T Consensus 77 ~~~hi~~~v~d~~~l~~~~~~l~~~G~~~ 105 (139)
T 1twu_A 77 PDSLLVFYVPNAVELAAITSKLKHMGYQE 105 (139)
T ss_dssp TTCEEEEECCCHHHHHHHHHHHHHTTCCE
T ss_pred CccEEEEEeCCcchHHHHHHHHHHcCCcC
Confidence 44678999999999999999999999764
No 18
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes}
Probab=33.87 E-value=31 Score=29.82 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=33.6
Q ss_pred HHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCC
Q 029323 124 WEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGR 164 (195)
Q Consensus 124 W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGr 164 (195)
|...+.+..++...+++++.++.+.|.+.++|.. ++-.|.
T Consensus 49 ~~igg~p~~vv~P~s~eev~~~v~~a~~~~~pv~-v~GgGs 88 (322)
T 3tx1_A 49 TKTGGAADVFVMPKTIEEAQEVVAYCHQNKIPLT-ILGNGS 88 (322)
T ss_dssp TSCCCEEEEEEECSSHHHHHHHHHHHHHTTCCEE-EESCCT
T ss_pred CCcCceeeEEEEeCCHHHHHHHHHHHHHcCCcEE-EECCcc
Confidence 5567889999999999999999999999999865 455554
No 19
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=30.36 E-value=33 Score=28.44 Aligned_cols=54 Identities=24% Similarity=0.471 Sum_probs=32.8
Q ss_pred CCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCccccCCCeeEEEEcCCCccchhhh
Q 029323 129 QPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSV 188 (195)
Q Consensus 129 ~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGrTev~pgs~TvlAIGP~p~~~Id~i 188 (195)
.+.+++-++..++-..+ .+|...|||+.-++| |-.+|.-++ ++| |+..+.+..|
T Consensus 149 ~Pdllvv~Dp~~e~~ai-~Ea~~l~IP~IalvD---Tn~~p~~Vd-y~I-P~Ndds~~si 202 (218)
T 3r8n_B 149 LPDALFVIDADHEHIAI-KEANNLGIPVFAIVD---TNSDPDGVD-FVI-PGNDDAIRAV 202 (218)
T ss_dssp CCCSCEEEETGGGHHHH-HHHHHHTCCCEEECC---SSSCCSSCS-EEC-CSCSSSHHHH
T ss_pred CCCeEEecCcccccHHH-HHHHHhCCCEEEEEe---CcCCCcccc-eEe-ecCCccHHHH
Confidence 44444444444444444 457788999999999 445555444 455 7766655543
No 20
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=30.13 E-value=21 Score=21.51 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=18.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCeEEE
Q 029323 136 CKNQQEMNKLWEVAENTGLPTFVV 159 (195)
Q Consensus 136 v~~e~eL~eL~~~A~~~gl~~~~V 159 (195)
....+||..|.++|+..+|....|
T Consensus 11 ggtpeelkklkeeakkanirvtfw 34 (36)
T 2ki0_A 11 GGTPEELKKLKEEAKKANIRVTFW 34 (36)
T ss_dssp CCCHHHHHHHHHHHHHHCCCCCBC
T ss_pred cCCHHHHHHHHHHHHhccEEEEee
Confidence 345689999999999998865554
No 21
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=28.07 E-value=1e+02 Score=26.18 Aligned_cols=53 Identities=23% Similarity=0.349 Sum_probs=33.6
Q ss_pred CCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCccccCCCeeEEEEcCCCccchhh
Q 029323 129 QPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDS 187 (195)
Q Consensus 129 ~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGrTev~pgs~TvlAIGP~p~~~Id~ 187 (195)
.+.+++-++...+-..+ .+|...|||+.-++| |-.+|.-++ ++| |+..+.+..
T Consensus 151 ~PdlliV~Dp~~e~~AI-~EA~~lgIPvIalvD---Tn~dp~~VD-y~I-P~Ndds~~S 203 (253)
T 3bch_A 151 EPRLLVVTDPRADHQPL-TEASYVNLPTIALCN---TDSPLRYVD-IAI-PCNNKGAHS 203 (253)
T ss_dssp SCSEEEESCTTTTHHHH-HHHHHTTCCEEEEEC---TTCCCTTCS-EEE-ESCCSSHHH
T ss_pred CCCEEEEECCCccchHH-HHHHHhCCCEEEEEc---CCCCcccCc-eEe-ecCCcchhh
Confidence 45666655544444444 457889999999999 555665444 455 776555443
No 22
>1ogd_A High affinity ribose transport protein RBSD; sugar transport; HET: RIP; 1.95A {Bacillus subtilis} SCOP: c.133.1.1 PDB: 1ogc_A* 1oge_A* 1ogf_A
Probab=27.37 E-value=43 Score=25.68 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=26.7
Q ss_pred CeEEEEcCCCccccCCCe-eEEEEcCCCc---cchhhhcCCC
Q 029323 155 PTFVVADAGRTQVSAGSK-TVLAIGPGPK---SLVDSVTGKQ 192 (195)
Q Consensus 155 ~~~~V~DAGrTev~pgs~-TvlAIGP~p~---~~Id~iTg~L 192 (195)
...+|.|||+. +|++.. ..+|.|++-. +.++.|+..|
T Consensus 22 D~ivIaDag~P-~p~~~~~idla~~~g~P~f~~vL~aIl~~~ 62 (131)
T 1ogd_A 22 DKIVIADAGLP-VPDGVLKIDLSLKPGLPAFQDTAAVLAEEM 62 (131)
T ss_dssp CEEEEECTTCC-CCTTSEEEECCCBTTBSCHHHHHHHHHHHS
T ss_pred CeEEEecCCCC-CCCCCCEEEeccCCCCCCHHHHHHHHHHhC
Confidence 67899999994 566655 4458888866 6777776544
No 23
>2kjz_A ATC0852; protein of unknown function, dimer, structural genomics, PSI protein structure initiative; NMR {Agrobacterium tumefaciens}
Probab=27.04 E-value=81 Score=22.60 Aligned_cols=29 Identities=10% Similarity=0.288 Sum_probs=25.2
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHCCCC
Q 029323 127 CGQPKIVVTCKNQQEMNKLWEVAENTGLP 155 (195)
Q Consensus 127 ~G~~KIVLkv~~e~eL~eL~~~A~~~gl~ 155 (195)
.+..-+.+.|+|.+++.++.+++++.|+.
T Consensus 85 ~~~~hl~f~v~d~~dv~~~~~~l~~~G~~ 113 (144)
T 2kjz_A 85 GGGGELAFRVENDAQVDETFAGWKASGVA 113 (144)
T ss_dssp SSSCEEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHHCCCe
Confidence 35677999999999999999999999965
No 24
>1xqa_A Glyoxalase/bleomycin resistance protein; dioxygenase, structural GEN midwest center for structural genomics, MCSG; HET: P6G; 1.80A {Bacillus cereus atcc 14579} SCOP: d.32.1.2
Probab=26.79 E-value=92 Score=20.60 Aligned_cols=29 Identities=7% Similarity=0.123 Sum_probs=25.2
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHCCCC
Q 029323 127 CGQPKIVVTCKNQQEMNKLWEVAENTGLP 155 (195)
Q Consensus 127 ~G~~KIVLkv~~e~eL~eL~~~A~~~gl~ 155 (195)
.+..-+.+.|+|.+++.++.+++++.|++
T Consensus 59 ~~~~~~~~~v~~~~d~~~~~~~l~~~G~~ 87 (113)
T 1xqa_A 59 PKTFHVGFPQESEEQVDKINQRLKEDGFL 87 (113)
T ss_dssp CTTCCEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHCCCE
Confidence 35667899999999999999999999976
No 25
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=26.46 E-value=47 Score=28.49 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=32.2
Q ss_pred HHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCC
Q 029323 124 WEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGR 164 (195)
Q Consensus 124 W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGr 164 (195)
|...+.+..++...|++|+.++.+.|.+.++|.. ++-.|.
T Consensus 43 ~~~~~~p~~vv~P~s~eev~~~l~~a~~~~~pv~-~~GgGt 82 (326)
T 1hsk_A 43 TKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVT-YLGNGS 82 (326)
T ss_dssp TSCCCEEEEEECCSSHHHHHHHHHHHHHTTCCEE-EESSCS
T ss_pred CCcCCcceEEEEcCCHHHHHHHHHHHHHcCCCEE-EECCCC
Confidence 3346778899999999999999999999999865 455554
No 26
>2rbb_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-2, PROT structure initiative; 1.82A {Burkholderia phytofirmans}
Probab=26.32 E-value=70 Score=22.39 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.7
Q ss_pred eEEEecCCHHHHHHHHHHHHHCCCC
Q 029323 131 KIVVTCKNQQEMNKLWEVAENTGLP 155 (195)
Q Consensus 131 KIVLkv~~e~eL~eL~~~A~~~gl~ 155 (195)
-+.+.|+|.+++.++.+++++.|+.
T Consensus 78 ~~~f~v~~~~dv~~~~~~l~~~G~~ 102 (141)
T 2rbb_A 78 LLNFDVDTKEAVDKLVPVAIAAGAT 102 (141)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCE
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCCe
Confidence 6889999999999999999999974
No 27
>3r4q_A Lactoylglutathione lyase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.51A {Agrobacterium tumefaciens}
Probab=26.32 E-value=1.4e+02 Score=21.54 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=25.8
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHCCCCeE
Q 029323 128 GQPKIVVTCKNQQEMNKLWEVAENTGLPTF 157 (195)
Q Consensus 128 G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~ 157 (195)
|..-+.+.|++.+++.++.+++++.|+...
T Consensus 76 g~~hi~f~V~~~~dld~~~~~l~~~G~~~~ 105 (160)
T 3r4q_A 76 GQGHFCFYADDKAEVDEWKTRFEALEIPVE 105 (160)
T ss_dssp EECEEEEEESSHHHHHHHHHHHHTTTCCCC
T ss_pred ceeEEEEEeCCHHHHHHHHHHHHHCCCEEe
Confidence 446789999999999999999999998653
No 28
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=25.68 E-value=65 Score=26.92 Aligned_cols=54 Identities=24% Similarity=0.438 Sum_probs=35.4
Q ss_pred CCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCccccCCCeeEEEEcCCCccchhhh
Q 029323 129 QPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSV 188 (195)
Q Consensus 129 ~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGrTev~pgs~TvlAIGP~p~~~Id~i 188 (195)
.+.+++-++..++-. ...+|...|||+.-++| |-.+|.-++ ..| |+-.+.+..|
T Consensus 157 ~Pdll~v~Dp~~e~~-ai~EA~~l~IPvIaivD---Tn~dp~~Vd-y~I-P~Ndds~~si 210 (231)
T 3bbn_B 157 LPDIVIIVDQQEEYT-ALRECITLGIPTICLID---TNCNPDLAD-ISI-PANDDAIASI 210 (231)
T ss_dssp CCSEEEESCTTTTHH-HHHHHHTTTCCEEECCC---SSSCCSSCS-EEC-CCCSSSHHHH
T ss_pred CCCEEEEeCCccccH-HHHHHHHhCCCEEEEec---CCCCcccee-EEe-eCCCccHHHH
Confidence 577777666545544 44558889999999999 455665444 455 7766655543
No 29
>2a4x_A Mitomycin-binding protein; ALFA/beta protein, mitomycin C-binding protein, bleomycin A2, antimicrobial protein; HET: BLM; 1.40A {Streptomyces caespitosus} SCOP: d.32.1.2 PDB: 2a4w_A* 1kmz_A 1kll_A*
Probab=25.66 E-value=95 Score=21.58 Aligned_cols=30 Identities=10% Similarity=0.141 Sum_probs=25.5
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHCCCCeE
Q 029323 128 GQPKIVVTCKNQQEMNKLWEVAENTGLPTF 157 (195)
Q Consensus 128 G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~ 157 (195)
+..-+.+.|++.+++.++.+++++.|+...
T Consensus 71 ~~~~l~f~v~~~~dv~~~~~~l~~~G~~~~ 100 (138)
T 2a4x_A 71 HRFAIAFEFPDTASVDKKYAELVDAGYEGH 100 (138)
T ss_dssp CSEEEEEECSSHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEEEeCCHHHHHHHHHHHHHCCCcee
Confidence 455789999999999999999999997643
No 30
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=25.37 E-value=67 Score=21.55 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHCCCCeEEEEcCCCccccCCCeeEEEEcCCC-ccchhhhc
Q 029323 137 KNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGP-KSLVDSVT 189 (195)
Q Consensus 137 ~~e~eL~eL~~~A~~~gl~~~~V~DAGrTev~pgs~TvlAIGP~p-~~~Id~iT 189 (195)
.+++.-+++.++++..|++..++. .++..-+-+||.. ++..+...
T Consensus 18 ~~~~~A~~l~~~L~~~G~~a~i~~--------~~~~yRV~vGpf~s~~~A~~~~ 63 (81)
T 1uta_A 18 RGAEQAETVRAQLAFEGFDSKITT--------NNGWNRVVIGPVKGKENADSTL 63 (81)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEEE--------CSSSEEEEESSCBTTTHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEe--------CCcEEEEEECCcCCHHHHHHHH
Confidence 567777788888888899877652 3567888899984 45554443
No 31
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=25.23 E-value=1.8e+02 Score=20.47 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=32.7
Q ss_pred HHHHHHHhCCCCeEEEecCCH--HHHHHHHHHHHHCCCCeEEEE
Q 029323 119 HLLRKWEQCGQPKIVVTCKNQ--QEMNKLWEVAENTGLPTFVVA 160 (195)
Q Consensus 119 ~~l~~W~~~G~~KIVLkv~~e--~eL~eL~~~A~~~gl~~~~V~ 160 (195)
+.+..+...|..+.|+-..|- ....++...++..++|++.+-
T Consensus 25 ~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~vp~~~~~ 68 (101)
T 3v7q_A 25 DLVIKEIRNARAKLVLLTEDASSNTAKKVTDKCNYYKVPYKKVE 68 (101)
T ss_dssp HHHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHTTCCEEEES
T ss_pred hhhHHHHhcCceeEEEEeccccccchhhhcccccccCCCeeeec
Confidence 345677788999999998875 345567777899999998873
No 32
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.01 E-value=1.1e+02 Score=25.17 Aligned_cols=52 Identities=19% Similarity=0.320 Sum_probs=31.7
Q ss_pred CCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCccccCCCeeEEEEcCCCccchh
Q 029323 129 QPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVD 186 (195)
Q Consensus 129 ~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGrTev~pgs~TvlAIGP~p~~~Id 186 (195)
.+.+++-++...+-..+. +|...|||+.-++| |--+|.-++ ++| |+..+.+.
T Consensus 111 ~Pdllvv~Dp~~d~~ai~-EA~~l~IP~Ial~D---Tn~~p~~Vd-~~I-P~Ndds~~ 162 (202)
T 3j20_B 111 EPDVLIVTDPRADHQAMR-EAVEIGIPIVALVD---TENLLSYVD-LAI-PTNNKGRK 162 (202)
T ss_dssp CCSEEEESCTTTSHHHHH-HHHHHTCCEEEEEC---TTCCCTTCC-EEE-ECCCSSHH
T ss_pred CCCeEEEeCCccchHHHH-HHHHcCCCEEEEEc---CCCCccccC-EEE-eCCCCcHH
Confidence 355555555444444444 57788999999999 445555443 455 66655444
No 33
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=24.60 E-value=80 Score=23.81 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=33.2
Q ss_pred HHHHHHHhCCCCeEEEecCCHHH--H-HHHHHHHHHCCCCeEEEEc
Q 029323 119 HLLRKWEQCGQPKIVVTCKNQQE--M-NKLWEVAENTGLPTFVVAD 161 (195)
Q Consensus 119 ~~l~~W~~~G~~KIVLkv~~e~e--L-~eL~~~A~~~gl~~~~V~D 161 (195)
..+..+...|..+.|+-..|-++ . ..|...++..+||++.+-+
T Consensus 47 ~~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~s 92 (135)
T 2aif_A 47 NEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRS 92 (135)
T ss_dssp HHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECC
Confidence 45667778899999998877543 3 6788889999999987744
No 34
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae}
Probab=24.53 E-value=20 Score=31.74 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=33.9
Q ss_pred HHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCC
Q 029323 123 KWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGR 164 (195)
Q Consensus 123 ~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGr 164 (195)
.|.-.|.+..++++.|++++.++.+.|.+.++|.. ++-.|.
T Consensus 24 t~~igg~a~~vv~p~s~eel~~~v~~a~~~~ipv~-vlGgGS 64 (357)
T 3i99_A 24 TFGIEQLAAQLVVAESIDDLKALYCSAEWASLPKL-IIGKGS 64 (357)
T ss_dssp TTCCSCEEEEEEEECSHHHHHHHHSSSTTTTSCEE-EESSCT
T ss_pred cCCCCccceEEEEECCHHHHHHHHHHHHHcCCCEE-EECCCc
Confidence 45567888999999999999999999999999865 455554
No 35
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=24.21 E-value=84 Score=29.51 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=34.6
Q ss_pred HHHHHHHHh--CCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCC
Q 029323 118 RHLLRKWEQ--CGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAG 163 (195)
Q Consensus 118 ~~~l~~W~~--~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAG 163 (195)
+++++.|.. ...+-.||...|++|..++.+.|.+.+||.+ .+=+|
T Consensus 192 ~d~~~~~~g~~~~~P~aVV~P~s~eeV~~iv~~A~~~~ipVv-prGgG 238 (658)
T 4bby_A 192 HEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNLCII-PIGGG 238 (658)
T ss_dssp HHHHHHHSSCCSCCCSEEEECCSHHHHHHHHHHHHHTTCEEE-EESSC
T ss_pred HHHHHHhCCcccCCcCEEEeeCCHHHHHHHHHHHHHCCCeEE-EECCC
Confidence 455666652 4578899999999999999999999998744 34443
No 36
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=23.96 E-value=1e+02 Score=25.45 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=33.4
Q ss_pred CCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCccccCCCeeEEEEcCCCccchhh
Q 029323 129 QPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDS 187 (195)
Q Consensus 129 ~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGrTev~pgs~TvlAIGP~p~~~Id~ 187 (195)
.+.+++-++...+-..+ .+|...|||+.-++| |..+|.-++ ++| |+..+.+..
T Consensus 115 ~PdlliV~Dp~~e~~ai-~EA~~l~IPvIalvD---Tn~~p~~Vd-~~I-P~Ndds~~S 167 (208)
T 1vi6_A 115 EPEVVFVNDPAIDKQAV-SEATAVGIPVVALCD---SNNSSADVD-LVI-PTNNKGRRA 167 (208)
T ss_dssp CCSEEEESCTTTTHHHH-HHHHHTTCCEEEEEC---TTCCCTTCS-EEE-ESCCSCHHH
T ss_pred CCCEEEEECCCcchhHH-HHHHHhCCCEEEEeC---CCCCccccC-EEE-eCCCCchhH
Confidence 45666655544444444 457889999999999 555665444 455 666555443
No 37
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=23.41 E-value=1.7e+02 Score=20.32 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=8.7
Q ss_pred HHHHHhCCCCeEEEecC
Q 029323 121 LRKWEQCGQPKIVVTCK 137 (195)
Q Consensus 121 l~~W~~~G~~KIVLkv~ 137 (195)
.+.+...|..-+.+.++
T Consensus 54 ~~~~~~~~~~~v~v~~d 70 (152)
T 3gl3_A 54 QAKYKAKGFQVVAVNLD 70 (152)
T ss_dssp HHHHGGGTEEEEEEECC
T ss_pred HHHhhcCCeEEEEEECC
Confidence 34455445455555555
No 38
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=23.22 E-value=1.9e+02 Score=20.22 Aligned_cols=41 Identities=15% Similarity=0.323 Sum_probs=30.0
Q ss_pred HHHHHHHhCCCCeEEEecCC--HHHHHHHHHHHHHCCCCeEEE
Q 029323 119 HLLRKWEQCGQPKIVVTCKN--QQEMNKLWEVAENTGLPTFVV 159 (195)
Q Consensus 119 ~~l~~W~~~G~~KIVLkv~~--e~eL~eL~~~A~~~gl~~~~V 159 (195)
..+..+.+.|..+.|+-..| ++-...|...++..++|++.+
T Consensus 22 ~~v~kai~~gka~lViiA~D~~~~~~~~l~~~c~~~~vp~~~~ 64 (101)
T 1w41_A 22 RKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEF 64 (101)
T ss_dssp HHHHHHHHHTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 34556767788898887766 344555777888899998875
No 39
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A*
Probab=22.99 E-value=1.1e+02 Score=27.41 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=32.6
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEcCCCc
Q 029323 127 CGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRT 165 (195)
Q Consensus 127 ~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~DAGrT 165 (195)
.+.+..|+.+.+++++.++.+.|++.|+|.. ++-.|+.
T Consensus 34 ~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~-v~ggGh~ 71 (473)
T 3rja_A 34 PYIPTAIAQTQTTAHIQSAVQCAKKLNLKVS-AKSGGHS 71 (473)
T ss_dssp CCCCSEEEECCSHHHHHHHHHHHHHTTCCEE-EESSCCC
T ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHcCCeEE-EEcCCCC
Confidence 5789999999999999999999999999854 5667764
No 40
>3rhe_A NAD-dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, SGX; 2.05A {Legionella pneumophila}
Probab=22.74 E-value=1.1e+02 Score=22.17 Aligned_cols=29 Identities=3% Similarity=0.174 Sum_probs=24.6
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHCCCCe
Q 029323 128 GQPKIVVTCKNQQEMNKLWEVAENTGLPT 156 (195)
Q Consensus 128 G~~KIVLkv~~e~eL~eL~~~A~~~gl~~ 156 (195)
+..-+.+.|+|.+++.++.+++++.|+..
T Consensus 67 ~~~~l~f~v~d~~dvd~~~~~l~~~G~~i 95 (148)
T 3rhe_A 67 GGMELSFQVNSNEMVDEIHRQWSDKEISI 95 (148)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHHTTCCE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHHhCCCEE
Confidence 34568999999999999999999999865
No 41
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=22.62 E-value=65 Score=21.13 Aligned_cols=30 Identities=7% Similarity=0.189 Sum_probs=23.9
Q ss_pred ecCCHHHHHHHHHHHHHCCCCeEEEEcCCC
Q 029323 135 TCKNQQEMNKLWEVAENTGLPTFVVADAGR 164 (195)
Q Consensus 135 kv~~e~eL~eL~~~A~~~gl~~~~V~DAGr 164 (195)
.+..+..+.+..+.-.++++.+..|.|.|+
T Consensus 4 tv~p~~tv~ea~~~M~~~~i~~~~V~d~~~ 33 (70)
T 3ghd_A 4 VVQPKDTVDRVAKILSRNKAGSAVVMEGDE 33 (70)
T ss_dssp EECTTCBHHHHHHHHHHTTCSEEEEEETTE
T ss_pred EECCCCcHHHHHHHHHHcCCCEEEEEECCE
Confidence 455557788888888889999999999764
No 42
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=22.27 E-value=1e+02 Score=23.38 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=33.6
Q ss_pred HHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHCCCCeEEEEc
Q 029323 119 HLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVAD 161 (195)
Q Consensus 119 ~~l~~W~~~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~~V~D 161 (195)
+.++.+...|..-++....+...+..+.+-+++.|+++..|.+
T Consensus 31 ~al~~l~~~G~~iii~TgR~~~~~~~~~~~l~~~gi~~~~I~~ 73 (142)
T 2obb_A 31 ETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLEFYAANK 73 (142)
T ss_dssp HHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCCCSEESS
T ss_pred HHHHHHHHCCCEEEEEeCCCcccHHHHHHHHHHcCCCeEEEEc
Confidence 4567788889877777777767777888888889999877755
No 43
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.48 E-value=2.1e+02 Score=19.92 Aligned_cols=67 Identities=18% Similarity=0.388 Sum_probs=41.2
Q ss_pred HHHHHHHhCCCCeEEEecCCH--HHHHHHHHHHHHCCCCeEEEEcCCCcccc--CC---CeeEEEE-cCCCccchh
Q 029323 119 HLLRKWEQCGQPKIVVTCKNQ--QEMNKLWEVAENTGLPTFVVADAGRTQVS--AG---SKTVLAI-GPGPKSLVD 186 (195)
Q Consensus 119 ~~l~~W~~~G~~KIVLkv~~e--~eL~eL~~~A~~~gl~~~~V~DAGrTev~--pg---s~TvlAI-GP~p~~~Id 186 (195)
+.+..+...|..+.|+-..|. +....+...++..++|++.+.+. ..|+- =| ..+++|| -|+....++
T Consensus 21 ~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s-~~eLG~a~Gk~~~~~~vaI~d~g~a~~l~ 95 (99)
T 3j21_Z 21 NETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGT-SVELGTLLGKPFVVASLAIVDPGESKILA 95 (99)
T ss_dssp HHHHHHHHHTCCSEEEEECCCCHHHHHHHHHHHHHTTCCEEEECCC-SCGGGGTTCSTTCSEEEEESSCSSCSHHH
T ss_pred HHHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCC-HHHHHHHHCCCCCEEEEEEEccchHHHHH
Confidence 345567777889988888763 34455777788999998776322 12221 12 2456776 355555444
No 44
>3ct8_A Protein BH2160, putative glyoxalase; NP_243026.1, glyoxalase/bleomycin resis protein/dioxygenase superfamily, structural genomics; HET: UNL; 2.10A {Bacillus halodurans c-125}
Probab=21.05 E-value=1.1e+02 Score=21.81 Aligned_cols=29 Identities=14% Similarity=0.331 Sum_probs=25.2
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHCCCC
Q 029323 127 CGQPKIVVTCKNQQEMNKLWEVAENTGLP 155 (195)
Q Consensus 127 ~G~~KIVLkv~~e~eL~eL~~~A~~~gl~ 155 (195)
.|..-+.+.|+|.+++.++.+.+++.|+.
T Consensus 85 ~g~~hi~f~v~~~~dv~~~~~~l~~~G~~ 113 (146)
T 3ct8_A 85 TGLNHLAFHAASREKVDELTQKLKERGDP 113 (146)
T ss_dssp SSCCEEEEECSCHHHHHHHHHHHHHHTCC
T ss_pred CCceEEEEECCCHHHHHHHHHHHHHcCCc
Confidence 45578999999999999999999999975
No 45
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=20.25 E-value=1.3e+02 Score=21.08 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=23.9
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHCCCCeE
Q 029323 127 CGQPKIVVTCKNQQEMNKLWEVAENTGLPTF 157 (195)
Q Consensus 127 ~G~~KIVLkv~~e~eL~eL~~~A~~~gl~~~ 157 (195)
.+-++||-|..|+- =++|.+.|+++|||.+
T Consensus 15 ~~aP~VvAKG~~~~-A~~I~~~A~e~~VPi~ 44 (83)
T 3bzy_B 15 TPLPLVIETGKDAK-ALQIIKLAELYDIPVI 44 (83)
T ss_dssp CSSCEEEEEEETHH-HHHHHHHHHHTTCCEE
T ss_pred CCCCEEEEEeCcHH-HHHHHHHHHHcCCCEE
Confidence 46789999999854 4469999999999854
Done!