BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029324
         (195 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1T0G|A Chain A, Hypothetical Protein At2g24940.1 From Arabidopsis Thaliana
           Has A Cytochrome B5 Like Fold
          Length = 109

 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 74/101 (73%)

Query: 73  LGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALM 132
           L + T  +L  Y+G+D +KP+ +AIKG+++DV+  + FYG GG Y+MFAG+DASRAL  M
Sbjct: 9   LEEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKM 68

Query: 133 SFDPQDLTGNIEGLSDSELEVLQDWEYKFMEKYVKVGQIVS 173
           S + +D++ ++EGL++ E+  L DWE KF  KY  VG++VS
Sbjct: 69  SKNEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVVS 109


>pdb|1J03|A Chain A, Solution Structure Of A Putative Steroid-Binding Protein
           From Arabidopsis
          Length = 102

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 73/99 (73%)

Query: 75  DVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSF 134
           + T  +L  Y+G+D +KP+ +AIKG+++DV+  + FYG GG Y+MFAG+DASRAL  MS 
Sbjct: 4   EFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSK 63

Query: 135 DPQDLTGNIEGLSDSELEVLQDWEYKFMEKYVKVGQIVS 173
           + +D++ ++EGL++ E+  L DWE KF  KY  VG++VS
Sbjct: 64  NEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVVS 102


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.134    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,900,855
Number of Sequences: 62578
Number of extensions: 222205
Number of successful extensions: 420
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 5
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)