Query 029324
Match_columns 195
No_of_seqs 223 out of 848
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 11:05:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1110 Putative steroid membr 100.0 9.3E-49 2E-53 326.8 15.1 175 7-193 1-177 (183)
2 KOG1108 Predicted heme/steroid 100.0 2.4E-32 5.3E-37 236.8 8.4 111 74-184 60-170 (281)
3 PF00173 Cyt-b5: Cytochrome b5 99.6 3.3E-16 7.1E-21 110.6 6.6 72 76-171 2-75 (76)
4 COG4892 Predicted heme/steroid 99.5 6.9E-15 1.5E-19 108.0 5.0 76 74-175 2-79 (81)
5 KOG0536 Flavohemoprotein b5+b5 99.3 6.7E-12 1.5E-16 101.8 6.4 73 75-173 69-144 (145)
6 KOG0537 Cytochrome b5 [Energy 99.1 3.3E-11 7.1E-16 95.8 3.4 57 72-132 3-61 (124)
7 COG5274 CYB5 Cytochrome b invo 98.6 3.2E-08 7E-13 82.5 4.9 58 74-135 50-109 (164)
8 PLN03199 delta6-acyl-lipid des 98.6 7E-08 1.5E-12 91.0 5.0 54 73-131 23-77 (485)
9 PLN03198 delta6-acyl-lipid des 98.5 6.5E-08 1.4E-12 92.4 4.1 58 71-132 101-159 (526)
10 PLN02252 nitrate reductase [NA 98.4 3.4E-07 7.5E-12 92.2 5.9 56 72-131 516-573 (888)
11 KOG4232 Delta 6-fatty acid des 97.5 3.3E-05 7.1E-10 72.6 1.0 57 74-135 8-66 (430)
12 KOG4576 Sulfite oxidase, heme- 95.5 0.0099 2.2E-07 49.2 2.5 49 74-125 80-128 (167)
13 PF14901 Jiv90: Cleavage induc 67.6 3.5 7.6E-05 31.9 1.7 17 92-108 56-72 (94)
14 PHA02681 ORF089 virion membran 58.5 24 0.00053 27.1 4.7 16 70-85 46-61 (92)
15 PF12596 Tnp_P_element_C: 87kD 56.1 11 0.00024 29.7 2.6 32 143-174 71-103 (106)
16 PF10717 ODV-E18: Occlusion-de 53.6 16 0.00035 27.8 3.1 26 7-32 19-44 (85)
17 PRK11789 N-acetyl-anhydromuran 43.4 46 0.001 28.2 4.7 83 93-180 78-162 (185)
18 KOG0079 GTP-binding protein H- 39.1 43 0.00093 28.7 3.7 11 100-110 86-96 (198)
19 PRK06549 acetyl-CoA carboxylas 35.3 26 0.00055 28.2 1.8 15 93-107 5-19 (130)
20 PF07172 GRP: Glycine rich pro 33.0 41 0.0009 25.7 2.5 17 16-32 6-22 (95)
21 PF06522 B12D: NADH-ubiquinone 31.5 59 0.0013 23.4 3.0 30 9-38 5-34 (73)
22 COG4880 Secreted protein conta 31.0 37 0.0008 33.4 2.3 34 71-108 96-129 (603)
23 PF15361 RIC3: Resistance to i 29.1 84 0.0018 25.9 3.9 21 16-36 89-109 (152)
24 PF05603 DUF775: Protein of un 29.0 32 0.00069 29.5 1.4 46 118-166 150-196 (202)
25 PF04272 Phospholamban: Phosph 28.6 77 0.0017 21.8 3.0 17 14-30 34-50 (52)
26 PHA02310 hypothetical protein 28.6 46 0.001 27.2 2.2 24 92-115 88-111 (130)
27 cd06583 PGRP Peptidoglycan rec 28.0 1.4E+02 0.0031 21.8 4.7 35 145-179 82-118 (126)
28 PF12273 RCR: Chitin synthesis 27.0 31 0.00068 27.0 1.0 7 111-117 78-84 (130)
29 PF04024 PspC: PspC domain; I 25.9 1.1E+02 0.0023 21.5 3.4 31 3-33 19-56 (61)
30 PHA02902 putative IMV membrane 25.0 1.8E+02 0.004 21.4 4.5 16 70-85 48-63 (70)
31 PRK06488 sulfur carrier protei 25.0 1.1E+02 0.0023 20.9 3.3 33 75-108 14-46 (65)
32 KOG0720 Molecular chaperone (D 24.8 40 0.00087 32.9 1.4 17 92-108 378-394 (490)
33 PRK08053 sulfur carrier protei 24.3 1.3E+02 0.0027 20.7 3.6 33 76-109 16-48 (66)
34 cd00565 ThiS ThiaminS ubiquiti 24.2 1.2E+02 0.0027 20.6 3.5 33 75-108 14-46 (65)
35 PF09604 Potass_KdpF: F subuni 23.6 1.1E+02 0.0023 18.3 2.6 18 16-33 4-21 (25)
36 TIGR03593 yidC_nterm membrane 23.2 82 0.0018 28.4 3.1 22 15-36 4-25 (366)
37 PRK10781 rcsF outer membrane l 22.7 89 0.0019 25.6 2.9 18 71-88 47-65 (133)
38 PF05506 DUF756: Domain of unk 22.4 40 0.00088 24.4 0.8 22 98-123 68-89 (89)
39 PRK07696 sulfur carrier protei 21.4 1.3E+02 0.0029 20.9 3.3 35 76-111 17-51 (67)
40 PRK13798 putative OHCU decarbo 21.4 1.1E+02 0.0023 25.5 3.2 25 142-166 89-113 (166)
41 TIGR01683 thiS thiamine biosyn 21.3 1.5E+02 0.0032 20.2 3.4 31 75-106 13-43 (64)
42 PF06024 DUF912: Nucleopolyhed 21.2 39 0.00084 25.8 0.5 12 18-29 71-82 (101)
43 TIGR01294 P_lamban phospholamb 21.0 1.3E+02 0.0027 20.8 2.9 17 14-30 34-50 (52)
44 TIGR03180 UraD_2 OHCU decarbox 20.8 1.1E+02 0.0024 25.2 3.1 26 142-167 84-109 (158)
45 TIGR03164 UHCUDC OHCU decarbox 20.6 1.1E+02 0.0024 25.1 3.1 25 142-166 84-108 (157)
No 1
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=100.00 E-value=9.3e-49 Score=326.79 Aligned_cols=175 Identities=42% Similarity=0.704 Sum_probs=147.1
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHhccccCCCCChhhhhhhhhhhHHHHHHhhhccCCCCCCCCccccCCCCHHHHhhhcC
Q 029324 7 YTGLSPAAFFTILALMCVVYKTVCSMFVDPEPPEDLKNKLISSSAAASAATAANFSNQTMIPETVQLGDVTEHELRAYDG 86 (195)
Q Consensus 7 ~~~lsp~~~~t~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~p~~~~~fT~eEL~~ydG 86 (195)
|+||+|..|+|.+++++++|.++..++.++--.-....+. ....++ ++.+.+|+ .++||.+||++|||
T Consensus 1 ~~gl~~~~~~tpl~~al~~~~l~~~~kl~~~~~r~~~~~~-------~~~~~~---~P~~~~P~--~~dfT~eEL~~ydG 68 (183)
T KOG1110|consen 1 YVGLAPKVFFTPLALALLIFLLFVGLKLSRFKFRRDSEKS-------DGSTEE---PPKESLPK--VRDFTVEELRQYDG 68 (183)
T ss_pred CCccchhhhhhhHHHHHHHHHHHhheeeeeeecccccccc-------ccCCCC---CCccCCCc--ccccCHHHHHhcCC
Confidence 6899999999999999999999999887773110000110 011111 11122333 35999999999999
Q ss_pred CCCCCCeEEEEcCeEEecccccccccCCCcccccccCChhHHHhhcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhcCc
Q 029324 87 SDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQDWEYKFMEKYV 166 (195)
Q Consensus 87 ~~~~~pi~lAI~G~VYDVT~g~~fYgPGG~Y~~fAGrDaSrala~~sfd~~~l~~dls~L~~~el~~L~~W~~~F~~KYp 166 (195)
.++++||||||||+|||||+||.||||||+|..||||||||+|++|||+..++.+|++||+..|+++|++|+++|+.||+
T Consensus 69 s~~d~~Il~AI~G~VYDVT~Gr~FYGp~GpY~~fAG~DASR~La~~s~d~~d~~ddlsdL~a~e~eal~eWE~~fk~KY~ 148 (183)
T KOG1110|consen 69 SDPDKPILLAINGKVYDVTRGREFYGPGGPYSLFAGKDASRGLAKMSFDLSDETDDLSDLTAEELEALNEWETKFKAKYP 148 (183)
T ss_pred CCCCCceEEEecceEEEecCCccccCCCCCchhhcccchHHHHHhcccchhhccccccccCHHHHHHHHHHHHHHhhcCc
Confidence 99899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecC--CCCCCCCCCCCCCCCCCCC
Q 029324 167 KVGQIVSE--QTSKPTKNGDKVPENQNHD 193 (195)
Q Consensus 167 ~VG~L~~~--~~~~~~~~~~~~p~~~~~~ 193 (195)
+||+|++. ...+.+.+.+++...++|+
T Consensus 149 ~VG~L~~~~~e~~~~s~~~~~~~~~~~~~ 177 (183)
T KOG1110|consen 149 VVGRLVKKGEENEEYSPEEDTKDAAQDQM 177 (183)
T ss_pred eeEEeecCCcccccCCccccccccccccc
Confidence 99999987 4778888999999988875
No 2
>KOG1108 consensus Predicted heme/steroid binding protein [General function prediction only]
Probab=99.97 E-value=2.4e-32 Score=236.79 Aligned_cols=111 Identities=34% Similarity=0.618 Sum_probs=107.5
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcccccccCChhHHHhhcCCCCCCCCCCCCCCCHHHHHH
Q 029324 74 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEV 153 (195)
Q Consensus 74 ~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG~Y~~fAGrDaSrala~~sfd~~~l~~dls~L~~~el~~ 153 (195)
+.||+|||++|||++.++||||||.|.|||||+++.+||||+.|++||||||||||.++.|.+..+.+|+.+|+++|+..
T Consensus 60 ~lFtpeeLa~fnGt~e~~piyLaiLGsVfdVs~gk~hYgsG~sYnhFaGRDASrAFvsGdf~e~gl~d~v~gLs~dElls 139 (281)
T KOG1108|consen 60 ILFTPEELAKFNGTEEGRPIYLAILGSVFDVSRGKKHYGSGCSYNHFAGRDASRAFVSGDFEEPGLADDVLGLSPDELLS 139 (281)
T ss_pred eeeCHHHHhhccCCCCCCceeeeeeceeeeccCCeeeeCCCCCcccccccccchheecccCCCCcchhhhccCCHHHHhh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCceeEEEecCCCCCCCCCCC
Q 029324 154 LQDWEYKFMEKYVKVGQIVSEQTSKPTKNGD 184 (195)
Q Consensus 154 L~~W~~~F~~KYp~VG~L~~~~~~~~~~~~~ 184 (195)
|.+|..||.+.|++||+|++....+.+.+|.
T Consensus 140 i~dWrsFY~k~Y~~vGrv~gryYds~G~pT~ 170 (281)
T KOG1108|consen 140 IADWRSFYQKDYVYVGRVIGRYYDSKGAPTP 170 (281)
T ss_pred hhhhhhhhhcccceeeEEeeeeecCCCCCcH
Confidence 9999999999999999999999888888764
No 3
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=99.65 E-value=3.3e-16 Score=110.58 Aligned_cols=72 Identities=36% Similarity=0.497 Sum_probs=62.5
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCC--cccccccCChhHHHhhcCCCCCCCCCCCCCCCHHHHHH
Q 029324 76 VTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGG--PYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEV 153 (195)
Q Consensus 76 fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG--~Y~~fAGrDaSrala~~sfd~~~l~~dls~L~~~el~~ 153 (195)
||.+||++||. +.++||+|+|+|||||... .+|||| .+..+||+|+|.+| +...
T Consensus 2 ~t~~el~~h~~---~~~~~v~i~g~VYDvt~~~-~~hpgg~~~~~~~aG~D~T~~f--------------------~~~~ 57 (76)
T PF00173_consen 2 YTWEELAKHNK---KGDCWVIIDGKVYDVTDFL-DRHPGGADILKKYAGRDATDAF--------------------EEAF 57 (76)
T ss_dssp EEHHHHTTTEE---TTEEEEEETTEEEECTTTT-TTSTTTSHHHHTTTTSBTHHHH--------------------HHHT
T ss_pred CCHHHHhhhCC---CCCEEEEECCEEccccccc-ccccchhHHHHHhccccccHHH--------------------hhcc
Confidence 79999999992 3579999999999999975 579999 78899999999999 3344
Q ss_pred HHHHHHHHhhcCceeEEE
Q 029324 154 LQDWEYKFMEKYVKVGQI 171 (195)
Q Consensus 154 L~~W~~~F~~KYp~VG~L 171 (195)
...|..++..+|.+||+|
T Consensus 58 h~~~~~~~l~~~~~vG~l 75 (76)
T PF00173_consen 58 HSWWAEKCLEKYYKVGYL 75 (76)
T ss_dssp HHHHHHHHHHGCGEEEEE
T ss_pred CcHHHHHHccCCCEEEEe
Confidence 568888999999999998
No 4
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=99.54 E-value=6.9e-15 Score=108.04 Aligned_cols=76 Identities=30% Similarity=0.554 Sum_probs=59.7
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCccccc-ccCChhHHHhh-cCCCCCCCCCCCCCCCHHHH
Q 029324 74 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMF-AGRDASRALAL-MSFDPQDLTGNIEGLSDSEL 151 (195)
Q Consensus 74 ~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG~Y~~f-AGrDaSrala~-~sfd~~~l~~dls~L~~~el 151 (195)
|.||+|||++|||++ .|+|||++|+|||||-+. .|+-|-+.... ||+|.|..|.. ...- +
T Consensus 2 refTLEELs~ynG~n--GpaYiA~~G~VYDvS~s~-~W~dGtHqglhsaG~DLs~~~~~~aphg---------------~ 63 (81)
T COG4892 2 REFTLEELSKYNGEN--GPAYIAVNGTVYDVSLSP-SWGDGTHQGLHSAGKDLSSEFNSCAPHG---------------M 63 (81)
T ss_pred ceecHHHHHhhcCCC--CCeEEEECCEEEeeccCc-ccCCCccccccccchhHHHHHhhcCCch---------------h
Confidence 679999999999997 499999999999999886 46766666655 99999999873 1111 1
Q ss_pred HHHHHHHHHHhhcCceeEEEecCC
Q 029324 152 EVLQDWEYKFMEKYVKVGQIVSEQ 175 (195)
Q Consensus 152 ~~L~~W~~~F~~KYp~VG~L~~~~ 175 (195)
+ .-+.||+||.|++..
T Consensus 64 e--------il~~~PvVG~L~k~~ 79 (81)
T COG4892 64 E--------ILTSLPVVGALIKEK 79 (81)
T ss_pred H--------HHhcCchhheeeccc
Confidence 1 226799999998764
No 5
>KOG0536 consensus Flavohemoprotein b5+b5R [Energy production and conversion]
Probab=99.28 E-value=6.7e-12 Score=101.79 Aligned_cols=73 Identities=32% Similarity=0.460 Sum_probs=61.3
Q ss_pred CCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCccc--ccccCChhHHHhhcCCCCCCCCCCCCCCCHHHHH
Q 029324 75 DVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYA--MFAGRDASRALALMSFDPQDLTGNIEGLSDSELE 152 (195)
Q Consensus 75 ~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG~Y~--~fAGrDaSrala~~sfd~~~l~~dls~L~~~el~ 152 (195)
.+|.+||++|+..++ |||+|+|+|||||.+. -|||||.-. ..||||||..|.+
T Consensus 69 ~vt~~El~KH~~~dD---cW~~i~G~VYnVt~Yl-~fHPgG~d~lmk~aGrD~T~~Fnk--------------------- 123 (145)
T KOG0536|consen 69 PVTAEELKKHNKKDD---CWIAIRGKVYNVTAYL-DFHPGGVDELMKHAGRDATKLFNK--------------------- 123 (145)
T ss_pred ccCHHHHHhhCCccc---eEEEEcCEEEeccccc-ccCCCCHHHHHHhcCcchHHHHHH---------------------
Confidence 489999999999883 9999999999999996 479999754 7799999999985
Q ss_pred HHHHHHHHHh-hcCceeEEEec
Q 029324 153 VLQDWEYKFM-EKYVKVGQIVS 173 (195)
Q Consensus 153 ~L~~W~~~F~-~KYp~VG~L~~ 173 (195)
...|+..=+ -+=.+||.|++
T Consensus 124 -~H~WVN~e~LL~~c~VGvl~d 144 (145)
T KOG0536|consen 124 -YHAWVNYEELLKKCFVGVLVD 144 (145)
T ss_pred -HHHHhcHHHHHhhceeeeecc
Confidence 677875433 46678998875
No 6
>KOG0537 consensus Cytochrome b5 [Energy production and conversion]
Probab=99.13 E-value=3.3e-11 Score=95.79 Aligned_cols=57 Identities=30% Similarity=0.417 Sum_probs=48.0
Q ss_pred ccCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCc--ccccccCChhHHHhhc
Q 029324 72 QLGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGP--YAMFAGRDASRALALM 132 (195)
Q Consensus 72 ~~~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG~--Y~~fAGrDaSrala~~ 132 (195)
..+.||++|+++||..+ .|||.|+|+|||||+..+ =||||. ....||+|||++|.-.
T Consensus 3 ~~k~~~~~EV~kHn~~~---d~Wvii~gkVYDvT~Fl~-eHPGG~~vLl~~AGkDaT~~F~~~ 61 (124)
T KOG0537|consen 3 DLKYYTLSEVAKHNKKD---DCWVIIHGKVYDVTSFLD-EHPGGEDVLLEYAGKDATEAFEDV 61 (124)
T ss_pred ccccccHHHHHhhcCCC---CeEEEECCEEEeccchhh-hCCChHHHHHHHhchhhHHhcccc
Confidence 35679999999999766 599999999999998643 399995 3588999999999743
No 7
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=98.65 E-value=3.2e-08 Score=82.47 Aligned_cols=58 Identities=29% Similarity=0.458 Sum_probs=49.6
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcc--cccccCChhHHHhhcCCC
Q 029324 74 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPY--AMFAGRDASRALALMSFD 135 (195)
Q Consensus 74 ~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG~Y--~~fAGrDaSrala~~sfd 135 (195)
..++.+|+.+|++.++ +||+|+|+|||||.... +||||.- ...+|+|||.+|...-.+
T Consensus 50 ~~~~~eev~~h~~~~d---~~ivi~g~VyDvs~fl~-~HPGGe~ii~~~~g~Dat~~f~~~~~~ 109 (164)
T COG5274 50 KPITAEEVAKHNKSED---CWIVINGKVYDVSQFLD-EHPGGEDIIKDTAGKDATKAFNFLHHS 109 (164)
T ss_pred ccccHHHHHHhcCccc---eEEEEcCEEEEhhhccc-cCCCcceeehhccCchhhhhhcccccc
Confidence 4589999999999872 99999999999998653 7999976 578999999999876554
No 8
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=98.55 E-value=7e-08 Score=90.98 Aligned_cols=54 Identities=24% Similarity=0.357 Sum_probs=46.6
Q ss_pred cCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcc-cccccCChhHHHhh
Q 029324 73 LGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPY-AMFAGRDASRALAL 131 (195)
Q Consensus 73 ~~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG~Y-~~fAGrDaSrala~ 131 (195)
.+.||.+|+++|+..+ .+||+|+|+|||||+.. -||||.- ...||+|||..|..
T Consensus 23 ~~~~s~~ev~~h~~~~---~~wi~i~g~vYDvt~f~--~HPGG~~i~~~aG~DaT~~F~~ 77 (485)
T PLN03199 23 PQKISWQEVKKHASPD---DAWIIHQNKVYDVSNWH--DHPGGAVIFTHAGDDMTDIFAA 77 (485)
T ss_pred CCccCHHHHHhhCCCC---CeEEEECCEEEcCCCcC--cCCCchHHHhhCCCChhHHHHH
Confidence 4569999999999875 49999999999999983 5999973 36799999999975
No 9
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=98.53 E-value=6.5e-08 Score=92.42 Aligned_cols=58 Identities=26% Similarity=0.387 Sum_probs=48.4
Q ss_pred cccCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcc-cccccCChhHHHhhc
Q 029324 71 VQLGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPY-AMFAGRDASRALALM 132 (195)
Q Consensus 71 ~~~~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG~Y-~~fAGrDaSrala~~ 132 (195)
.+.+.+|.+|+++|+..+ .|||+|+|+|||||+... .||||.- ...+|+|||.+|...
T Consensus 101 ~~~~~~t~~ev~~H~~~~---d~Wivi~gkVYDvT~fl~-~HPGG~~i~~~aG~DaT~~F~~~ 159 (526)
T PLN03198 101 KKSKSHLLSEVAAHNKPN---DCWIVIKNKVYDVSDFAA-EHPGGSVISTYFGRDGTDAFSSF 159 (526)
T ss_pred hccCcCCHHHHHhhCCCC---CeEEEECCEEEecHHHHH-hCCCchHHHHhcCCcHhHHHHHh
Confidence 345689999999999876 499999999999998643 5999972 268999999999753
No 10
>PLN02252 nitrate reductase [NADPH]
Probab=98.40 E-value=3.4e-07 Score=92.19 Aligned_cols=56 Identities=25% Similarity=0.414 Sum_probs=48.4
Q ss_pred ccCCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCc--ccccccCChhHHHhh
Q 029324 72 QLGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGP--YAMFAGRDASRALAL 131 (195)
Q Consensus 72 ~~~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG~--Y~~fAGrDaSrala~ 131 (195)
..+.||.+||++|+..+ .+||+|+|+|||||.... .||||. -..+||+|||..|..
T Consensus 516 ~~~~~t~~ev~~h~~~~---~~Wivi~g~VYDvT~fl~-~HPGG~~~I~~~aG~DaT~~F~~ 573 (888)
T PLN02252 516 GSKQYTMSEVRKHNSED---SCWIVVHGHVYDCTRFLK-DHPGGADSILINAGTDCTEEFDA 573 (888)
T ss_pred ccceeCHHHHHhhCcCC---CeEEEECCEEEeCHHHHH-HCCChHHHHHhhcCCCcHHHHhh
Confidence 45789999999999865 499999999999998643 599995 468999999999975
No 11
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=97.49 E-value=3.3e-05 Score=72.65 Aligned_cols=57 Identities=28% Similarity=0.423 Sum_probs=48.1
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcc--cccccCChhHHHhhcCCC
Q 029324 74 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPY--AMFAGRDASRALALMSFD 135 (195)
Q Consensus 74 ~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG~Y--~~fAGrDaSrala~~sfd 135 (195)
+.+|-|+++++|+.++ .|++|+| |||||.... -||||+- ...+|.|||++|..+--+
T Consensus 8 ~~~~we~~~~~~~~~~---~W~~id~-vYd~s~~~~-~HPGG~~~I~~~~g~DaTdaF~AfH~~ 66 (430)
T KOG4232|consen 8 TTFSWEGKRKHDKAEG---LWLVIDG-VYDISDWIK-RHPGGSRVIEHYAGQDATDAFEAFHPG 66 (430)
T ss_pred eeeeccchhhccCCCc---eEEEeec-cccHHHHHH-hCCCchhHHHHhcCCccchHHHHhCCC
Confidence 4588899999999873 9999999 999999743 4999964 699999999999876433
No 12
>KOG4576 consensus Sulfite oxidase, heme-binding component [Energy production and conversion]
Probab=95.50 E-value=0.0099 Score=49.22 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=38.9
Q ss_pred CCCCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccccCCCcccccccCCh
Q 029324 74 GDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDA 125 (195)
Q Consensus 74 ~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fYgPGG~Y~~fAGrDa 125 (195)
..+|.||+++|+... .+|||-...-|||||.... -||||.--.+|---|
T Consensus 80 ~iY~~EEV~~H~s~e--~rIWVTyg~gVyDVTdFv~-~HPGGdKillAAG~a 128 (167)
T KOG4576|consen 80 HIYTKEEVSSHTSPE--TRIWVTYGSGVYDVTDFVD-LHPGGDKILLAAGGA 128 (167)
T ss_pred cchhHHHHHhcCCCc--cceEEEecCcceeHHHHHH-hCCCcceeeeecCCC
Confidence 459999999999876 4799999999999998753 499997665543333
No 13
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=67.61 E-value=3.5 Score=31.87 Aligned_cols=17 Identities=18% Similarity=0.544 Sum_probs=14.2
Q ss_pred CeEEEEcCeEEeccccc
Q 029324 92 PLLMAIKGQIYDVSRSR 108 (195)
Q Consensus 92 pi~lAI~G~VYDVT~g~ 108 (195)
..|+-.+|+|||||.+.
T Consensus 56 ~yy~c~~g~VyDiTeWA 72 (94)
T PF14901_consen 56 TYYACMDGKVYDITEWA 72 (94)
T ss_pred EEEEEcCceEEehhhhh
Confidence 46788999999999853
No 14
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=58.47 E-value=24 Score=27.07 Aligned_cols=16 Identities=19% Similarity=0.397 Sum_probs=11.9
Q ss_pred ccccCCCCHHHHhhhc
Q 029324 70 TVQLGDVTEHELRAYD 85 (195)
Q Consensus 70 p~~~~~fT~eEL~~yd 85 (195)
++=...+|.+|++.+.
T Consensus 46 s~F~D~lTpDQVrAlH 61 (92)
T PHA02681 46 SSFEDKMTDDQVRAFH 61 (92)
T ss_pred chhhccCCHHHHHHHH
Confidence 4445579999998875
No 15
>PF12596 Tnp_P_element_C: 87kDa Transposase; InterPro: IPR022242 This domain family is found in eukaryotes, and is typically between 78 and 110 amino acids in length. The family is found in association with PF05485 from PFAM. There are two completely conserved residues (D and G) that may be functionally important. This family is an 87kDa transposase protein which catalyses both the precise and imprecise excision of a nonautonomous P transposable element.
Probab=56.10 E-value=11 Score=29.72 Aligned_cols=32 Identities=22% Similarity=0.505 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHHHHH-HHHhhcCceeEEEecC
Q 029324 143 IEGLSDSELEVLQDWE-YKFMEKYVKVGQIVSE 174 (195)
Q Consensus 143 ls~L~~~el~~L~~W~-~~F~~KYp~VG~L~~~ 174 (195)
+..+.+.-|+.+.+|+ .+|+.|||.+|.+...
T Consensus 71 ~~e~e~d~l~YiaGyVa~k~~~k~p~L~~~t~~ 103 (106)
T PF12596_consen 71 LDEIEEDGLEYIAGYVAKKFRNKYPNLGDYTCN 103 (106)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcCCchhheeec
Confidence 3446677788899999 6999999999987654
No 16
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=53.58 E-value=16 Score=27.83 Aligned_cols=26 Identities=23% Similarity=0.534 Sum_probs=20.0
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHhcc
Q 029324 7 YTGLSPAAFFTILALMCVVYKTVCSM 32 (195)
Q Consensus 7 ~~~lsp~~~~t~~~~~~~~y~~~~~~ 32 (195)
-+||+|..+.|||++++++.+++--+
T Consensus 19 ~~~l~pn~lMtILivLVIIiLlImlf 44 (85)
T PF10717_consen 19 LNGLNPNTLMTILIVLVIIILLIMLF 44 (85)
T ss_pred ccccChhHHHHHHHHHHHHHHHHHHH
Confidence 46899999999888877777776543
No 17
>PRK11789 N-acetyl-anhydromuranmyl-L-alanine amidase; Provisional
Probab=43.43 E-value=46 Score=28.22 Aligned_cols=83 Identities=16% Similarity=0.230 Sum_probs=48.1
Q ss_pred eEEEEcCeEEeccc-ccccccCCCcccccccCChhHHHhhcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhcCcee-EE
Q 029324 93 LLMAIKGQIYDVSR-SRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQDWEYKFMEKYVKV-GQ 170 (195)
Q Consensus 93 i~lAI~G~VYDVT~-g~~fYgPGG~Y~~fAGrDaSrala~~sfd~~~l~~dls~L~~~el~~L~~W~~~F~~KYp~V-G~ 170 (195)
.+|.-+|.|+-.-. .+.=||-|.. .|.|+.-- ...|.-=|....+....++.|+++|......+.++|++. .+
T Consensus 78 y~I~rdG~I~Q~V~~~~~AwHAG~s--~w~G~~~~---N~~SIGIEl~G~~~~~~t~aQ~~aL~~L~~~L~~~y~i~~~~ 152 (185)
T PRK11789 78 FLIRRDGEIVQFVSFDDRAWHAGVS--SFQGRERC---NDFSIGIELEGTDTLPFTDAQYQALAALTRALRAAYPIIAER 152 (185)
T ss_pred EEECCCCeEEEeccccccccccccc--ccCCcCCC---CCCEEEEEEECCCCCCccHHHHHHHHHHHHHHHHHcCCCHHh
Confidence 45556788885433 2233444422 34454211 111111111223456799999999999999999999976 56
Q ss_pred EecCCCCCCC
Q 029324 171 IVSEQTSKPT 180 (195)
Q Consensus 171 L~~~~~~~~~ 180 (195)
+++..+...+
T Consensus 153 IvGH~diap~ 162 (185)
T PRK11789 153 ITGHSDIAPG 162 (185)
T ss_pred EEehhhcCCC
Confidence 6666554433
No 18
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=39.05 E-value=43 Score=28.73 Aligned_cols=11 Identities=36% Similarity=0.779 Sum_probs=8.1
Q ss_pred eEEeccccccc
Q 029324 100 QIYDVSRSRMF 110 (195)
Q Consensus 100 ~VYDVT~g~~f 110 (195)
.|||||++..|
T Consensus 86 vVYDVTn~ESF 96 (198)
T KOG0079|consen 86 VVYDVTNGESF 96 (198)
T ss_pred EEEECcchhhh
Confidence 37999987644
No 19
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=35.26 E-value=26 Score=28.25 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=12.6
Q ss_pred eEEEEcCeEEecccc
Q 029324 93 LLMAIKGQIYDVSRS 107 (195)
Q Consensus 93 i~lAI~G~VYDVT~g 107 (195)
.=|-|||++|||+=-
T Consensus 5 ~~itvng~~y~V~ve 19 (130)
T PRK06549 5 FKITIDGKEYLVEME 19 (130)
T ss_pred EEEEECCEEEEEEEE
Confidence 558899999999864
No 20
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=33.03 E-value=41 Score=25.67 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhcc
Q 029324 16 FTILALMCVVYKTVCSM 32 (195)
Q Consensus 16 ~t~~~~~~~~y~~~~~~ 32 (195)
|++|+|++++.+++|+-
T Consensus 6 ~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSE 22 (95)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 55666666666666643
No 21
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=31.55 E-value=59 Score=23.42 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=25.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHhccccCCCC
Q 029324 9 GLSPAAFFTILALMCVVYKTVCSMFVDPEP 38 (195)
Q Consensus 9 ~lsp~~~~t~~~~~~~~y~~~~~~~~~~~~ 38 (195)
.|-|.-++..++++.++|+++..++..|+-
T Consensus 5 el~PL~~~vg~a~~~a~~~~~r~l~~~PdV 34 (73)
T PF06522_consen 5 ELYPLFVIVGVAVGGATFYLYRLLLTNPDV 34 (73)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 466777888899999999999999888863
No 22
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=31.02 E-value=37 Score=33.45 Aligned_cols=34 Identities=24% Similarity=0.574 Sum_probs=27.7
Q ss_pred cccCCCCHHHHhhhcCCCCCCCeEEEEcCeEEeccccc
Q 029324 71 VQLGDVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSR 108 (195)
Q Consensus 71 ~~~~~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~ 108 (195)
+|.+.+..++.-++||.. ||++++||||=+-...
T Consensus 96 VQVkGvDE~DivKtdG~~----iy~s~~~KvYvi~~~p 129 (603)
T COG4880 96 VQVKGVDEEDIVKTDGER----IYVSVNGKVYVIDKNP 129 (603)
T ss_pred ceEccCCchhhcccCCcE----EEEEeCCeEEEEcCCC
Confidence 555667788889999875 9999999999887653
No 23
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=29.09 E-value=84 Score=25.85 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhccccCC
Q 029324 16 FTILALMCVVYKTVCSMFVDP 36 (195)
Q Consensus 16 ~t~~~~~~~~y~~~~~~~~~~ 36 (195)
-||.++++++|+++...+...
T Consensus 89 YtiGI~~f~lY~l~Ki~~~k~ 109 (152)
T PF15361_consen 89 YTIGIVLFILYTLFKIKKKKD 109 (152)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 357788888888887665444
No 24
>PF05603 DUF775: Protein of unknown function (DUF775); InterPro: IPR008493 This family consists of several eukaryotic proteins of unknown function.
Probab=28.99 E-value=32 Score=29.47 Aligned_cols=46 Identities=26% Similarity=0.326 Sum_probs=26.1
Q ss_pred cccccCChhHHHhhc-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhcCc
Q 029324 118 AMFAGRDASRALALM-SFDPQDLTGNIEGLSDSELEVLQDWEYKFMEKYV 166 (195)
Q Consensus 118 ~~fAGrDaSrala~~-sfd~~~l~~dls~L~~~el~~L~~W~~~F~~KYp 166 (195)
..||-|=+-.+|.-+ ||...... .+-.--=+..|++|.++|++|+.
T Consensus 150 ~~~A~ki~~NlfNyl~SF~~~~~~---~~~~~VP~~~~~~W~~kFe~Kl~ 196 (202)
T PF05603_consen 150 KEFAQKIAENLFNYLSSFSGSQPQ---GGEEVVPLSVFDKWWEKFERKLR 196 (202)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCC---CCceEEeHHHHHHHHHHHHHHHh
Confidence 445555555555532 45443211 11111236899999999999874
No 25
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=28.62 E-value=77 Score=21.84 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 029324 14 AFFTILALMCVVYKTVC 30 (195)
Q Consensus 14 ~~~t~~~~~~~~y~~~~ 30 (195)
+|.+|+++++++|.++.
T Consensus 34 nfclilicllli~iiv~ 50 (52)
T PF04272_consen 34 NFCLILICLLLICIIVM 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55667777888887764
No 26
>PHA02310 hypothetical protein
Probab=28.55 E-value=46 Score=27.21 Aligned_cols=24 Identities=8% Similarity=0.278 Sum_probs=20.1
Q ss_pred CeEEEEcCeEEecccccccccCCC
Q 029324 92 PLLMAIKGQIYDVSRSRMFYGPGG 115 (195)
Q Consensus 92 pi~lAI~G~VYDVT~g~~fYgPGG 115 (195)
|=.|..+|++|||.+..++|.-+|
T Consensus 88 gD~lvwnGkry~v~g~~dW~~QDG 111 (130)
T PHA02310 88 GDQFIWTGRVFQLESQGSWFYQDG 111 (130)
T ss_pred CCEEEEcCcEEEEccccceeecCC
Confidence 445889999999999988987665
No 27
>cd06583 PGRP Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls. PGRPs have been divided into three classes: short PGRPs (PGRP-S), that are small (20 kDa) extracellular proteins; intermediate PGRPs (PGRP-I) that are 40-45 kDa and are predicted to be transmembrane proteins; and long PGRPs (PGRP-L), up to 90 kDa, which may be either intracellular or transmembrane. Several structures of PGRPs are known in insects and mammals, some bound with substrates like Muramyl Tripeptide (MTP) or Tracheal Cytotoxin (TCT). The substrate binding site is conserved in PGRP-LCx, PGRP-LE, and PGRP-Ialpha proteins. This family includes Zn-dependent N-Acetylmuramoyl-L-alanine Amidase, EC:3.5.1.28. This enzyme cleaves the amide bond between N-acetylmuramoyl and L-amino acids, preferentially D-lactyl-L-Ala, in bacterial cell walls. The structure for the bacteriophage T7 lysozyme shows that two of
Probab=28.00 E-value=1.4e+02 Score=21.83 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHHHHhhcCce--eEEEecCCCCCC
Q 029324 145 GLSDSELEVLQDWEYKFMEKYVK--VGQIVSEQTSKP 179 (195)
Q Consensus 145 ~L~~~el~~L~~W~~~F~~KYp~--VG~L~~~~~~~~ 179 (195)
..++.|++++.++...+.++|.+ ...|........
T Consensus 82 ~~~~~q~~~~~~L~~~l~~~~~i~~~~~i~~H~~~~~ 118 (126)
T cd06583 82 PPTAAQLEALAELLAYLVKRYGIPPDYRIVGHRDVSP 118 (126)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCCCEEEecccCCC
Confidence 68999999999999999999998 567766554433
No 28
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=26.98 E-value=31 Score=26.95 Aligned_cols=7 Identities=29% Similarity=0.833 Sum_probs=2.6
Q ss_pred ccCCCcc
Q 029324 111 YGPGGPY 117 (195)
Q Consensus 111 YgPGG~Y 117 (195)
|+..|.|
T Consensus 78 Yd~~g~~ 84 (130)
T PF12273_consen 78 YDQQGNF 84 (130)
T ss_pred CCCCCCC
Confidence 3333333
No 29
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=25.90 E-value=1.1e+02 Score=21.49 Aligned_cols=31 Identities=19% Similarity=0.538 Sum_probs=18.2
Q ss_pred cchhccCCChHH---HHHHHHH----HHHHHHHHhccc
Q 029324 3 TITTYTGLSPAA---FFTILAL----MCVVYKTVCSMF 33 (195)
Q Consensus 3 ~~~~~~~lsp~~---~~t~~~~----~~~~y~~~~~~~ 33 (195)
-|..|.|++|.. +|.++++ ++++|.+..-+.
T Consensus 19 GlA~~~gid~~~vRl~~v~l~~~~~~~~l~Y~~~w~~l 56 (61)
T PF04024_consen 19 GLAEYFGIDPTLVRLIFVVLTFFTGGGILLYLILWLLL 56 (61)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 367899999972 2222221 556777766543
No 30
>PHA02902 putative IMV membrane protein; Provisional
Probab=25.04 E-value=1.8e+02 Score=21.36 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=11.4
Q ss_pred ccccCCCCHHHHhhhc
Q 029324 70 TVQLGDVTEHELRAYD 85 (195)
Q Consensus 70 p~~~~~fT~eEL~~yd 85 (195)
++=...+|.+|++.+.
T Consensus 48 ~~F~D~lTpDQirAlH 63 (70)
T PHA02902 48 PLFKDSLTPDQIKALH 63 (70)
T ss_pred chhhccCCHHHHHHHH
Confidence 3444569999998764
No 31
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=24.96 E-value=1.1e+02 Score=20.89 Aligned_cols=33 Identities=18% Similarity=0.047 Sum_probs=25.7
Q ss_pred CCCHHHHhhhcCCCCCCCeEEEEcCeEEeccccc
Q 029324 75 DVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSR 108 (195)
Q Consensus 75 ~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~ 108 (195)
..|..+|.++-+-+. +.+-+++||.|..-+.+.
T Consensus 14 ~~tl~~Ll~~l~~~~-~~vavavN~~iv~~~~~~ 46 (65)
T PRK06488 14 ATTLALLLAELDYEG-NWLATAVNGELVHKEARA 46 (65)
T ss_pred cCcHHHHHHHcCCCC-CeEEEEECCEEcCHHHcC
Confidence 358999998877763 568899999998865543
No 32
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=24.78 E-value=40 Score=32.94 Aligned_cols=17 Identities=18% Similarity=0.544 Sum_probs=14.0
Q ss_pred CeEEEEcCeEEeccccc
Q 029324 92 PLLMAIKGQIYDVSRSR 108 (195)
Q Consensus 92 pi~lAI~G~VYDVT~g~ 108 (195)
..|+.-+|+|||+|.+.
T Consensus 378 tyy~c~DgkVYDITeWA 394 (490)
T KOG0720|consen 378 TYYACMDGKVYDITEWA 394 (490)
T ss_pred eeeeecCCceEeehhhh
Confidence 46778899999999863
No 33
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=24.33 E-value=1.3e+02 Score=20.73 Aligned_cols=33 Identities=24% Similarity=0.069 Sum_probs=25.2
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEecccccc
Q 029324 76 VTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRM 109 (195)
Q Consensus 76 fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~ 109 (195)
.|..+|.+.-+.+ .+.|-+|+||.|..=+.+..
T Consensus 16 ~tl~~ll~~l~~~-~~~vaVavN~~iv~r~~w~~ 48 (66)
T PRK08053 16 QTVHELLEQLNQL-QPGAALAINQQIIPREQWAQ 48 (66)
T ss_pred CCHHHHHHHcCCC-CCcEEEEECCEEeChHHcCc
Confidence 7889998877765 35699999999976555443
No 34
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=24.22 E-value=1.2e+02 Score=20.55 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=25.6
Q ss_pred CCCHHHHhhhcCCCCCCCeEEEEcCeEEeccccc
Q 029324 75 DVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSR 108 (195)
Q Consensus 75 ~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~ 108 (195)
..|..+|.++-+-+ ...|-|++||++-+-+.+.
T Consensus 14 ~~tv~~ll~~l~~~-~~~i~V~vNg~~v~~~~~~ 46 (65)
T cd00565 14 GATLAELLEELGLD-PRGVAVALNGEIVPRSEWA 46 (65)
T ss_pred CCCHHHHHHHcCCC-CCcEEEEECCEEcCHHHcC
Confidence 36889998887776 3679999999997666543
No 35
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=23.58 E-value=1.1e+02 Score=18.30 Aligned_cols=18 Identities=22% Similarity=0.102 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhccc
Q 029324 16 FTILALMCVVYKTVCSMF 33 (195)
Q Consensus 16 ~t~~~~~~~~y~~~~~~~ 33 (195)
..++++++++|+++.-++
T Consensus 4 ~~~v~~~L~~YL~~aLl~ 21 (25)
T PF09604_consen 4 GGIVAVALFVYLFYALLR 21 (25)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 347778888888887664
No 36
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=23.25 E-value=82 Score=28.39 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhccccCC
Q 029324 15 FFTILALMCVVYKTVCSMFVDP 36 (195)
Q Consensus 15 ~~t~~~~~~~~y~~~~~~~~~~ 36 (195)
++++++|+++++++...++..+
T Consensus 4 ~il~i~ls~~~~~~w~~~~~~~ 25 (366)
T TIGR03593 4 LILAIALSFVIFLLWQAWQSDP 25 (366)
T ss_pred chHHHHHHHHHHHHHHHHHhhc
Confidence 4667777777777777776544
No 37
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=22.71 E-value=89 Score=25.56 Aligned_cols=18 Identities=22% Similarity=0.023 Sum_probs=12.4
Q ss_pred cccCCCC-HHHHhhhcCCC
Q 029324 71 VQLGDVT-EHELRAYDGSD 88 (195)
Q Consensus 71 ~~~~~fT-~eEL~~ydG~~ 88 (195)
-..+.|+ .+||..++-++
T Consensus 47 s~V~lY~~~eel~~~~~~~ 65 (133)
T PRK10781 47 APVRLYTNAEELVGKPFRD 65 (133)
T ss_pred CceEEEcCHHHHcCCCCce
Confidence 3345688 69998876654
No 38
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=22.37 E-value=40 Score=24.42 Aligned_cols=22 Identities=45% Similarity=0.813 Sum_probs=14.8
Q ss_pred cCeEEecccccccccCCCcccccccC
Q 029324 98 KGQIYDVSRSRMFYGPGGPYAMFAGR 123 (195)
Q Consensus 98 ~G~VYDVT~g~~fYgPGG~Y~~fAGr 123 (195)
.+-=||++ .++|+|-...||||
T Consensus 68 s~gwYDl~----v~~~~~F~rr~aGr 89 (89)
T PF05506_consen 68 SGGWYDLT----VTGPNGFLRRFAGR 89 (89)
T ss_pred CCCcEEEE----EEcCCCEEEEecCC
Confidence 34446655 35899955799996
No 39
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=21.41 E-value=1.3e+02 Score=20.91 Aligned_cols=35 Identities=20% Similarity=0.035 Sum_probs=27.9
Q ss_pred CCHHHHhhhcCCCCCCCeEEEEcCeEEecccccccc
Q 029324 76 VTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFY 111 (195)
Q Consensus 76 fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~g~~fY 111 (195)
.|..+|.+.-|-+ .+.+-+++||.|..=+.+..++
T Consensus 17 ~tv~~lL~~l~~~-~~~vav~vN~~iv~r~~w~~~~ 51 (67)
T PRK07696 17 KTVAELLTHLELD-NKIVVVERNKDILQKDDHTDTS 51 (67)
T ss_pred ccHHHHHHHcCCC-CCeEEEEECCEEeCHHHcCcee
Confidence 5789999887776 4679999999998877765544
No 40
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=21.39 E-value=1.1e+02 Score=25.51 Aligned_cols=25 Identities=12% Similarity=0.236 Sum_probs=22.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCc
Q 029324 142 NIEGLSDSELEVLQDWEYKFMEKYV 166 (195)
Q Consensus 142 dls~L~~~el~~L~~W~~~F~~KYp 166 (195)
.+..|++++.+.|.+|-..|++||-
T Consensus 89 gl~~l~~~~~~~l~~lN~~Y~~kFG 113 (166)
T PRK13798 89 GVADADEAVMAALAAGNRAYEEKFG 113 (166)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCC
Confidence 4678999999999999999999863
No 41
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=21.30 E-value=1.5e+02 Score=20.16 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=24.1
Q ss_pred CCCHHHHhhhcCCCCCCCeEEEEcCeEEeccc
Q 029324 75 DVTEHELRAYDGSDPNKPLLMAIKGQIYDVSR 106 (195)
Q Consensus 75 ~fT~eEL~~ydG~~~~~pi~lAI~G~VYDVT~ 106 (195)
..|..+|.+.-+-+. +.+-|++||++-.=+.
T Consensus 13 ~~tv~~ll~~l~~~~-~~v~v~vN~~iv~~~~ 43 (64)
T TIGR01683 13 GLTLAALLESLGLDP-RRVAVAVNGEIVPRSE 43 (64)
T ss_pred CCcHHHHHHHcCCCC-CeEEEEECCEEcCHHH
Confidence 378899998887764 6799999999965433
No 42
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=21.20 E-value=39 Score=25.79 Aligned_cols=12 Identities=8% Similarity=0.542 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 029324 18 ILALMCVVYKTV 29 (195)
Q Consensus 18 ~~~~~~~~y~~~ 29 (195)
++++++++|.++
T Consensus 71 ~v~IlVily~Iy 82 (101)
T PF06024_consen 71 FVCILVILYAIY 82 (101)
T ss_pred HHHHHHHHhhhe
Confidence 333334443333
No 43
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=21.00 E-value=1.3e+02 Score=20.81 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 029324 14 AFFTILALMCVVYKTVC 30 (195)
Q Consensus 14 ~~~t~~~~~~~~y~~~~ 30 (195)
+|.+|+++++++|.++.
T Consensus 34 nf~lilicllli~iivm 50 (52)
T TIGR01294 34 NFCLILICLLLICIIVM 50 (52)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45557777777777664
No 44
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=20.83 E-value=1.1e+02 Score=25.16 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCce
Q 029324 142 NIEGLSDSELEVLQDWEYKFMEKYVK 167 (195)
Q Consensus 142 dls~L~~~el~~L~~W~~~F~~KYp~ 167 (195)
.+..+++++.+.|.+|-..|++||-+
T Consensus 84 gl~~~~~~~~~~L~~lN~~Y~~kFGf 109 (158)
T TIGR03180 84 GVDGADEETRAALLEGNAAYEEKFGR 109 (158)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHCCC
Confidence 57789999999999999999998643
No 45
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=20.64 E-value=1.1e+02 Score=25.05 Aligned_cols=25 Identities=12% Similarity=0.319 Sum_probs=22.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCc
Q 029324 142 NIEGLSDSELEVLQDWEYKFMEKYV 166 (195)
Q Consensus 142 dls~L~~~el~~L~~W~~~F~~KYp 166 (195)
.+..|++++.+.|.+|-..|++||-
T Consensus 84 gl~~~~~~~~~~L~~lN~~Y~~kFG 108 (157)
T TIGR03164 84 GLDQLSQEEFARFTRLNNAYRARFG 108 (157)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHCC
Confidence 4678999999999999999999863
Done!